Seurat-package	Seurat-package
AddMetaData	AddMetaData
AddMetaData.Assay	AddMetaData
AddMetaData.Seurat	AddMetaData
AddModuleScore	AddModuleScore
AddSamples	merge.Seurat
ALRAChooseKPlot	ALRAChooseKPlot
AnchorSet	AnchorSet-class
AnchorSet-class	AnchorSet-class
as.data.frame.Matrix	as.sparse
as.Graph	as.Graph
as.Graph.Matrix	as.Graph
as.Graph.matrix	as.Graph
as.loom	as.loom
as.loom.Seurat	as.loom
as.Seurat	as.Seurat
as.Seurat.loom	as.Seurat
as.Seurat.SingleCellExperiment	as.Seurat
as.SingleCellExperiment	as.SingleCellExperiment
as.SingleCellExperiment.Seurat	as.SingleCellExperiment
as.sparse	as.sparse
as.sparse.data.frame	as.sparse
as.sparse.H5Group	as.sparse
as.sparse.Matrix	as.sparse
as.sparse.matrix	as.sparse
Assay	Assay-class
Assay-class	Assay-class
AugmentPlot	AugmentPlot
AverageExpression	AverageExpression
BarcodeInflectionsPlot	BarcodeInflectionsPlot
BlackAndWhite	CustomPalette
BlueAndRed	CustomPalette
BoldTitle	SeuratTheme
BuildClusterTree	BuildClusterTree
CalculateBarcodeInflections	CalculateBarcodeInflections
CaseMatch	CaseMatch
cc.genes	cc.genes
CellCycleScoring	CellCycleScoring
CellPlot	CellScatter
Cells	Cells
Cells.default	Cells
Cells.DimReduc	Cells
CellScatter	CellScatter
CellSelector	CellSelector
CollapseSpeciesExpressionMatrix	CollapseSpeciesExpressionMatrix
CombinePlots	CombinePlots
Command	Command
Command.Seurat	Command
CreateAssayObject	CreateAssayObject
CreateDimReducObject	CreateDimReducObject
CreateGeneActivityMatrix	CreateGeneActivityMatrix
CreateSeuratObject	CreateSeuratObject
CustomDistance	CustomDistance
CustomPalette	CustomPalette
DarkTheme	SeuratTheme
DefaultAssay	DefaultAssay
DefaultAssay.DimReduc	DefaultAssay
DefaultAssay.Seurat	DefaultAssay
DefaultAssay<-	DefaultAssay
DefaultAssay<-.Seurat	DefaultAssay
DietSeurat	DietSeurat
DimHeatmap	DimHeatmap
DimPlot	DimPlot
DimReduc	DimReduc-class
DimReduc-class	DimReduc-class
DoHeatmap	DoHeatmap
DotPlot	DotPlot
ElbowPlot	ElbowPlot
Embeddings	Embeddings
Embeddings.DimReduc	Embeddings
Embeddings.Seurat	Embeddings
ExpMean	ExpMean
ExportToCellbrowser	ExportToCellbrowser
ExpSD	ExpSD
ExpVar	ExpVar
FeatureHeatmap	FeaturePlot
FeatureLocator	CellSelector
FeaturePlot	FeaturePlot
FeatureScatter	FeatureScatter
FetchData	FetchData
FindAllMarkers	FindAllMarkers
FindAllMarkersNode	FindAllMarkers
FindClusters	FindClusters
FindClusters.default	FindClusters
FindClusters.Seurat	FindClusters
FindConservedMarkers	FindConservedMarkers
FindIntegrationAnchors	FindIntegrationAnchors
FindMarkers	FindMarkers
FindMarkers.default	FindMarkers
FindMarkers.Seurat	FindMarkers
FindMarkersNode	FindMarkers
FindNeighbors	FindNeighbors
FindNeighbors.Assay	FindNeighbors
FindNeighbors.default	FindNeighbors
FindNeighbors.dist	FindNeighbors
FindNeighbors.Seurat	FindNeighbors
FindTransferAnchors	FindTransferAnchors
FindVariableFeatures	FindVariableFeatures
FindVariableFeatures.Assay	FindVariableFeatures
FindVariableFeatures.default	FindVariableFeatures
FindVariableFeatures.Seurat	FindVariableFeatures
FindVariableGenes	FindVariableFeatures
FontSize	SeuratTheme
GenePlot	FeatureScatter
GetAssay	GetAssay
GetAssay.Seurat	GetAssay
GetAssayData	GetAssayData
GetAssayData.Assay	GetAssayData
GetAssayData.Seurat	GetAssayData
GetIntegrationData	GetIntegrationData
Graph	Graph-class
Graph-class	Graph-class
HoverLocator	HoverLocator
HTODemux	HTODemux
HTOHeatmap	HTOHeatmap
HVFInfo	HVFInfo
HVFInfo.Assay	HVFInfo
HVFInfo.Seurat	HVFInfo
ICAPlot	DimPlot
Idents	Idents
Idents.Seurat	Idents
Idents<-	Idents
Idents<-.Seurat	Idents
IntegrateData	IntegrateData
IntegrationData	IntegrationData-class
IntegrationData-class	IntegrationData-class
JackStraw	JackStraw
JackStrawData	JackStrawData-class
JackStrawData-class	JackStrawData-class
JackStrawPlot	JackStrawPlot
JS	JS
JS.DimReduc	JS
JS.JackStrawData	JS
JS<-	JS
JS<-.DimReduc	JS
JS<-.JackStrawData	JS
Key	Key
Key.Assay	Key
Key.DimReduc	Key
Key.Seurat	Key
Key<-	Key
Key<-.Assay	Key
Key<-.DimReduc	Key
L2CCA	L2CCA
L2Dim	L2Dim
LabelClusters	LabelClusters
Labeler	LabelPoints
LabelPoints	LabelPoints
levels.Seurat	Idents
levels<-.Seurat	Idents
Loadings	Loadings
Loadings.DimReduc	Loadings
Loadings.Seurat	Loadings
Loadings<-	Loadings
Loadings<-.DimReduc	Loadings
LocalStruct	LocalStruct
LogNormalize	LogNormalize
LogSeuratCommand	LogSeuratCommand
LogVMR	LogVMR
MeanVarPlot	VariableFeaturePlot
merge	merge.Seurat
merge.Assay	merge.Seurat
merge.Seurat	merge.Seurat
MergeSeurat	merge.Seurat
MetaFeature	MetaFeature
MinMax	MinMax
Misc	Misc
Misc.Assay	Misc
Misc.Seurat	Misc
Misc<-	Misc
Misc<-.Assay	Misc
Misc<-.Seurat	Misc
MixingMetric	MixingMetric
MULTIseqDemux	MULTIseqDemux
NoAxes	SeuratTheme
NoGrid	SeuratTheme
NoLegend	SeuratTheme
NormalizeData	NormalizeData
NormalizeData.Assay	NormalizeData
NormalizeData.default	NormalizeData
NormalizeData.Seurat	NormalizeData
OldWhichCells	OldWhichCells
OldWhichCells.Assay	OldWhichCells
OldWhichCells.Seurat	OldWhichCells
pbmc_small	pbmc_small
PCAPlot	DimPlot
PCASigGenes	PCASigGenes
PCHeatmap	DimHeatmap
PercentageFeatureSet	PercentageFeatureSet
PlotClusterTree	PlotClusterTree
PolyDimPlot	PolyDimPlot
PolyFeaturePlot	PolyFeaturePlot
print	print.DimReduc
print.DimReduc	print.DimReduc
Project	Project
Project.Seurat	Project
Project<-	Project
Project<-.Seurat	Project
ProjectDim	ProjectDim
PurpleAndYellow	CustomPalette
Read10X	Read10X
Read10X_h5	Read10X_h5
ReadAlevin	ReadAlevin
ReadAlevinCsv	ReadAlevinCsv
ReadH5AD	h5ad
ReadH5AD.character	h5ad
ReadH5AD.H5File	h5ad
RelativeCounts	RelativeCounts
RenameCells	RenameCells
RenameCells.Assay	RenameCells
RenameCells.DimReduc	RenameCells
RenameCells.Seurat	RenameCells
RenameIdent	Idents
RenameIdents	Idents
RenameIdents.Seurat	Idents
ReorderIdent	Idents
ReorderIdent.Seurat	Idents
RestoreLegend	SeuratTheme
RidgePlot	RidgePlot
RotatedAxis	SeuratTheme
RunALRA	RunALRA
RunALRA.default	RunALRA
RunALRA.Seurat	RunALRA
RunCCA	RunCCA
RunCCA.default	RunCCA
RunCCA.Seurat	RunCCA
RunICA	RunICA
RunICA.Assay	RunICA
RunICA.default	RunICA
RunICA.Seurat	RunICA
RunLSI	RunLSI
RunLSI.Assay	RunLSI
RunLSI.default	RunLSI
RunLSI.Seurat	RunLSI
RunPCA	RunPCA
RunPCA.Assay	RunPCA
RunPCA.default	RunPCA
RunPCA.Seurat	RunPCA
RunTSNE	RunTSNE
RunTSNE.DimReduc	RunTSNE
RunTSNE.dist	RunTSNE
RunTSNE.matrix	RunTSNE
RunTSNE.Seurat	RunTSNE
RunUMAP	RunUMAP
RunUMAP.default	RunUMAP
RunUMAP.Graph	RunUMAP
RunUMAP.Seurat	RunUMAP
SampleUMI	SampleUMI
ScaleData	ScaleData
ScaleData.Assay	ScaleData
ScaleData.default	ScaleData
ScaleData.Seurat	ScaleData
ScoreJackStraw	ScoreJackStraw
ScoreJackStraw.DimReduc	ScoreJackStraw
ScoreJackStraw.JackStrawData	ScoreJackStraw
ScoreJackStraw.Seurat	ScoreJackStraw
SCTransform	SCTransform
SelectIntegrationFeatures	SelectIntegrationFeatures
SetAssayData	SetAssayData
SetAssayData.Assay	SetAssayData
SetAssayData.Seurat	SetAssayData
SetDimReduction	CreateDimReducObject
SetIdent	Idents
SetIdent.Seurat	Idents
SetIntegrationData	SetIntegrationData
Seurat	Seurat-class
seurat	oldseurat-class
Seurat-class	Seurat-class
seurat-class	oldseurat-class
SeuratAccess	AddMetaData
SeuratAxes	SeuratTheme
SeuratCommand	SeuratCommand-class
SeuratCommand-class	SeuratCommand-class
SeuratTheme	SeuratTheme
SpatialTheme	SeuratTheme
SplitDotPlotGG	DotPlot
SplitObject	SplitObject
StashIdent	Idents
StashIdent.Seurat	Idents
Stdev	Stdev
Stdev.DimReduc	Stdev
Stdev.Seurat	Stdev
StopCellbrowser	StopCellbrowser
subset	subset.Seurat
subset.Seurat	subset.Seurat
SubsetByBarcodeInflections	SubsetByBarcodeInflections
SubsetData	SubsetData
SubsetData.Assay	SubsetData
SubsetData.Seurat	SubsetData
TF.IDF	TF.IDF
Tool	Tool
Tool.Seurat	Tool
Tool<-	Tool
Tool<-.Seurat	Tool
Tools	Tool
TopCells	TopCells
TopFeatures	TopFeatures
TransferData	TransferData
TSNEPlot	DimPlot
UMAPPlot	DimPlot
UpdateSeuratObject	UpdateSeuratObject
VariableFeaturePlot	VariableFeaturePlot
VariableFeatures	VariableFeatures
VariableFeatures.Assay	VariableFeatures
VariableFeatures.Seurat	VariableFeatures
VariableFeatures<-	VariableFeatures
VariableFeatures<-.Assay	VariableFeatures
VariableFeatures<-.Seurat	VariableFeatures
VariableGenePlot	VariableFeaturePlot
VizDimLoadings	VizDimLoadings
VlnPlot	VlnPlot
WhichCells	WhichCells
WhichCells.Assay	WhichCells
WhichCells.Seurat	WhichCells
WhiteBackground	SeuratTheme
WriteH5AD	h5ad
WriteH5AD.Seurat	h5ad
[.Seurat	subset.Seurat
[[<-,Assay-method	AddMetaData
[[<-,Seurat-method	AddMetaData
