baf.bayes	baf.bayes
baf.model.fit	baf.model.fit
chromosome.view	chromosome.view
CP.example	CP.data
cp.plot	cp.plot
cp.plot.contours	cp.plot
example.seqz	example.seqz
find.breaks	find.breaks
gc.norm	gc.norm
gc.sample.stats	gc.norm
genome.view	chromosome.view
get.ci	get.ci
model.points	model.points
mufreq.bayes	baf.bayes
mufreq.model.fit	baf.model.fit
mutation.table	mutation.table
plotWindows	plotWindows
read.acgt	read.seqz
read.seqz	read.seqz
segment.breaks	find.breaks
sequenza.extract	workflows
sequenza.fit	workflows
sequenza.results	workflows
theoretical.baf	theoretical.baf
theoretical.depth.ratio	theoretical.baf
theoretical.mufreq	theoretical.baf
types.matrix	types.matrix
VarScan2seqz	VarScan2seqz
windowValues	windowValues
