# Analysis of Parent-Specific DNA Copy Numbers

## Documentation for package ‘PSCBS’ version 0.61.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

PSCBS-package | Package PSCBS
callSegmentationOutliers | Calls/drops single-locus outliers along the genome
callSegmentationOutliers.data.frame | Calls/drops single-locus outliers along the genome
callSegmentationOutliers.default | Calls/drops single-locus outliers along the genome
CBS | The CBS class
dropSegmentationOutliers | Calls/drops single-locus outliers along the genome
dropSegmentationOutliers.data.frame | Calls/drops single-locus outliers along the genome
dropSegmentationOutliers.default | Calls/drops single-locus outliers along the genome
findLargeGaps | Identifies gaps of a genome where there exist no observations
findLargeGaps.data.frame | Identifies gaps of a genome where there exist no observations
findLargeGaps.default | Identifies gaps of a genome where there exist no observations
gapsToSegments | Gets the genomic segments that are complementary to the gaps
gapsToSegments.data.frame | Gets the genomic segments that are complementary to the gaps
NonPairedPSCBS | The NonPairedPSCBS class
PairedPSCBS | The PairedPSCBS class
PSCBS | The PSCBS class
segmentByCBS | Segment genomic signals using the CBS method
segmentByCBS.CBS | Segment genomic signals using the CBS method
segmentByCBS.CNA | Segment genomic signals using the CBS method
segmentByCBS.data.frame | Segment genomic signals using the CBS method
segmentByCBS.default | Segment genomic signals using the CBS method
segmentByNonPairedPSCBS | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method
segmentByNonPairedPSCBS.data.frame | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method
segmentByNonPairedPSCBS.default | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method
segmentByNonPairedPSCBS.PairedPSCBS | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method
segmentByPairedPSCBS | Segment total copy numbers and allele B fractions using the Paired PSCBS method
segmentByPairedPSCBS.data.frame | Segment total copy numbers and allele B fractions using the Paired PSCBS method
segmentByPairedPSCBS.default | Segment total copy numbers and allele B fractions using the Paired PSCBS method
segmentByPairedPSCBS.PairedPSCBS | Segment total copy numbers and allele B fractions using the Paired PSCBS method