# PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods.

## Documentation for package ‘peer’ version 1.0

- DESCRIPTION file.

## Help Pages

peer-package | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
package | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
peer | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_calcBound | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getAdd_mean | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getAlpha | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getBounds | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getCovariates | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getEps | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getNc | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getNj | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getNk | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getNmax_iterations | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getNp | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getPhenoMean | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getPhenoVar | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getPriorAlphaA | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getPriorAlphaB | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getPriorEpsA | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getPriorEpsB | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getResiduals | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getResidualVars | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getSigmaOff | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getSparsityPrior | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getTolerance | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getVarTolerance | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getW | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getX | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_getZ | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_init_net | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_init_net_sparse | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_logprob | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_plotModel | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_plotQtl | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setAdd_mean | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setCovariates | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setNk | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setNmax_iterations | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setPhenoMean | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setPhenoVar | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setPriorAlpha | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setPriorAlphaA | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setPriorAlphaB | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setPriorEps | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setPriorEpsA | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setSigmaOff | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setSparsityPrior | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setTolerance | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_setVarTolerance | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~
PEER_update | PEER is a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. ~~ package title ~~