# Natral AntiSense Transcripts Identification using RNA-seq

## Documentation for package ‘NASTIseq’ version 1.0

- DESCRIPTION file.

## Help Pages

NASTISeq-package | NASTIseq, an R package for the identification of natural antisense transcripts.
defineFDR | Define FDR threshold using training data
FindNATs | A function to find predicted cis-NAT pairs given a genome annotation file.
getnegativepairs | Extract negative training gene pairs from known gene annotation.
llanti_full | Log likelihood function for the antisense model
llsense_full | Log likelihood function for the sense model
NASTIpredict | A wrapper function for generating prediction scores of the training data.
NASTISeq | NASTIseq, an R package for the identification of natural antisense transcripts.
WholeRoot | Whole root read count data and annotation for Arabidopsis.