Package: nanopoRe
Type: Package
Title: Accessory Methods for the Analysis of Oxford Nanopore
        Technologies DNA Sequence Data
Version: 0.2.9
Author: Stephen Rudd <stephen.rudd@nanoporetech.com>
Maintainer: Stephen Rudd <stephen.rudd@nanoporetech.com>
Description: A collection of utilities used by the Oxford Nanopore Technologies DNA sequence 
    analysis tutorials. These tutorials provide a collection of best-practise workflows that 
    demonstrate examples of how Nanopore sequence data may be used in applied bioinformatics 
    workflows.
License: file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Depends: R (>= 3.6.0)
Imports: Biostrings, data.table, digest, dplyr, emojifont, fastmatch,
        gdata, GenomicAlignments, GenomicRanges, GenomeInfoDb, ggbio,
        ggplot2, grid, gtools, Hmisc, IRanges, IRdisplay, kableExtra,
        knitr, magrittr, methods, pbmcapply, plyr, rlang, RColorBrewer,
        Rcpp, reshape2, Rsamtools, RCurl, R.utils, scales, S4Vectors,
        tibble, vcfR, writexl, yaml, grDevices, graphics, parallel,
        stats, utils
LinkingTo: Rcpp
Suggests: devtools, testthat, BiocStyle, rmarkdown
biocViews: Software, Technology, Sequencing
VignetteBuilder: knitr
Built: R 4.3.1; x86_64-conda-linux-gnu; 2023-07-17 14:24:48 UTC; unix
