# Miscellaneous Esoteric Statistical Scripts

## Documentation for package ‘MESS’ version 0.5.5

- DESCRIPTION file.

## Help Pages

MESS-package | Collection of miscellaneous useful and semi-useful functions
adaptive.weights | Compute weights for use with adaptive lasso.
add_torows | Fast addition of vector to each row of matrix
age | Compute the age of a person from two dates.
auc | Compute the area under the curve for two vectors.
bdstat | Danish live births and deaths
bees | Bee data. Number of different types of bees caught.
bin | Fast binning of numeric vector into equidistant bins
categorize | A table function to use with magrittr pipes
clotting | Blood clotting for 158 rats
cmd | Correlation matrix distance
col.alpha | Add and set alpha channel for RGB color
col.shade | Shade an RGB color
col.tint | Tint an RGB color
common.shared | Compute a common shared environment matrix
common.shared.pedigree | Compute a common shared environment matrix
common.shared.pedigreeList | Compute a common shared environment matrix
conditional_rowMeans | Parallel means conditional on number of non-missing
cumsumbinning | Binning based on cumulative sum with reset above threshold
drop1.geeglm | Drop All Possible Single Terms to a geeglm Model Using Wald or Score Test
drop1.geem | Drop All Possible Single Terms to a geem Model Using Wald or Score Test
earthquakes | Earthquakes in 2015
expand_table | Expand table or matrix to data frame
extended.shared | Compute a common shared environment matrix
extended.shared.pedigree | Compute a common shared environment matrix
extended.shared.pedigreeList | Compute a common shared environment matrix
fac2num | Convert factor to numeric vector
feature.test | Inference for features identified by the Lasso
filldown | Fill down NA with the last observed observation
geekin | Fit a generalized estimating equation (GEE) model with fixed additive correlation structure
gkgamma | Goodman-Kruskal's gamma statistic for a two-dimensional table
greenland | Average yearly summer air temperature for Tasiilaq, Greenland
happiness | Happiness score and tax rates for 148 countries
ht | Show the head and tail of an object
icecreamads | Ice cream consumption and advertising
ks_cumtest | Kolmogorov-Smirnov goodness of fit test for cumulative discrete data
kwdata | Non-parametric Kruskal Wallis data example
lifeexpect | Estimated life expectancy for Danish newborns
lower.tri.vector | Split Matrix by Clusters and Return Lower Triangular Parts as Vector
matched | Flu hospitalization
MESS | Collection of miscellaneous useful and semi-useful functions
mfastLmCpp | Fast marginal simple regresion analyses
monte_carlo_chisq_test | Two-sided table test with fixed margins
nh4 | Ammonia nitrogen found in river
ordered.clusters | Check if unique elements of a vector appear in contiguous clusters
pairwise.cor.test | Pairwise Tests for Association/Correlation Between Paired Samples
pairwise_combination_indices | Compute all pairwise combinations of indices
pairwise_Schur_product | Compute Schur products (element-wise) of all pairwise combinations of columns in matrix
panel.hist | Panel plot of histogram and density curve
panel.r2 | Panel plot of R2 values for pairs
picea | Ozone concentration damage to picea spruce
power_binom_test | Power Calculations for Exact Test of a simple null hypothesis in a Bernoulli experiment
power_mcnemar_test | Power Calculations for Exact and Asymptotic McNemar Test in a 2 by 2 table
power_prop_test | Power Calculations for Two-Sample Test for Proportions with unequal sample size
power_t_test | Power calculations for one and two sample t tests with unequal sample size
prepost.test | Pretest-posttest RCT for quantitative observations with possible missing values
print.geekin | Fit a generalized estimating equation (GEE) model with fixed additive correlation structure
qdiag | Fast extraction of matrix diagonal
QIC | Quasi Information Criterion
QIC.geeglm | Quasi Information Criterion
QIC.geekin | Quasi Information Criterion
QIC.ordgee | Quasi Information Criterion
qpcr | Gene expression from real-time quantitative PCR
quadform | Fast quadratic form computation
rainman | Perception of points in a swarm
repmat | Fast replication of a matrix
residualplot | Plots a standardaized residual
residualplot.default | Plots a standardaized residual
residualplot.glm | Plots a standardaized residual
residualplot.lm | Plots a standardaized residual
rmvt.pedigree | Simulate residual multivariate t-distributed data from a polygenic model
rmvtnorm.pedigree | Simulate residual multivariate Gaussian data from a polygenic model
rootogram | Hanging rootogram for normal distribution
rootonorm | Hanging rootogram for normal distribution
round_percent | Round vector of number to percentages
rud | Simulate randomized urn design
scorefct | Internal functions for the MESS package
screen_variables | Screen variable before penalized regression
segregate.genes | Segregate genes through a pedigree
sinv | Invert a symmetric positive-definite matrix
smokehealth | Effect of smoking on self reported health
soccer | Danish national soccer players
superroot2 | Gene expression data from two-color dye-swap experiment
tracemp | Fast computation of trace of matrix product
wallyplot | Plots a Wally plot
wallyplot.default | Plots a Wally plot
wallyplot.lm | Plots a Wally plot
write.xml | Write a data frame in XML format