# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Dec 19 15:16:02 2024
# ------------------------------------------------

package:
  name: r-liger
  version: 2.1.0
source:
  sha256: 16b79fdcd1467e4c192f9fb38bb4f35a6710aee319839639edfdf5d87e086e74
  url:
    - https://cran.r-project.org/src/contrib/Archive/rliger/rliger_2.1.0.tar.gz
    - https://cran.r-project.org/src/contrib/rliger_2.1.0.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports:
    - r-liger >=2.1.0,<3.0a0
  script: R CMD INSTALL --build .
  string: r44h165a49b_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - binutils_linux-64 2.43 h4852527_2
    - gcc_impl_linux-64 13.3.0 hfea6d02_1
    - gcc_linux-64 13.3.0 hc28eda2_7
    - gxx_impl_linux-64 13.3.0 hdbfa832_1
    - gxx_linux-64 13.3.0 h6834431_7
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 13.3.0 h84ea5a7_101
    - libgomp 14.2.0 h77fa898_1
    - libsanitizer 13.3.0 heb74ff8_1
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-devel_linux-64 13.3.0 h84ea5a7_101
    - make 4.4.1 hb9d3cd8_2
    - sysroot_linux-64 2.17 h4a8ded7_18
    - tzdata 2024b hc8b5060_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - bioconductor-biocgenerics 0.52.0 r44hdfd78af_0
    - bioconductor-complexheatmap 2.22.0 r44hdfd78af_0
    - bioconductor-iranges 2.40.0 r44h3df3fcb_0
    - bioconductor-s4vectors 0.44.0 r44h3df3fcb_0
    - bwidget 1.10.1 ha770c72_0
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.4 hb9d3cd8_0
    - ca-certificates 2024.12.14 hbcca054_0
    - cairo 1.18.2 h3394656_1
    - curl 8.11.1 h332b0f4_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 h77eed37_3
    - fontconfig 2.15.0 h7e30c49_1
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h267a509_2
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 14.2.0 h6b349bd_1
    - gfortran_impl_linux-64 14.2.0 hc73f493_1
    - glpk 5.0 h445213a_0
    - gmp 6.3.0 hac33072_2
    - graphite2 1.3.13 h59595ed_1003
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 14.2.0 h2c03514_1
    - harfbuzz 10.1.0 h0b3b770_0
    - hdf5 1.14.4 nompi_h2d575fe_105
    - icu 75.1 he02047a_0
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - lerc 4.0.0 h27087fc_0
    - libaec 1.1.3 h59595ed_0
    - libblas 3.9.0 26_linux64_openblas
    - libcblas 3.9.0 26_linux64_openblas
    - libcurl 8.11.1 h332b0f4_0
    - libdeflate 1.23 h4ddbbb0_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 hd590300_2
    - libexpat 2.6.4 h5888daf_0
    - libffi 3.4.2 h7f98852_5
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 14.2.0 h41c2201_101
    - libgcc-ng 14.2.0 h69a702a_1
    - libgfortran 14.2.0 h69a702a_1
    - libgfortran-ng 14.2.0 h69a702a_1
    - libgfortran5 14.2.0 hd5240d6_1
    - libglib 2.82.2 h2ff4ddf_0
    - libgomp 14.2.0 h77fa898_1
    - libiconv 1.17 hd590300_2
    - libjpeg-turbo 3.0.0 hd590300_1
    - liblapack 3.9.0 26_linux64_openblas
    - liblzma 5.6.3 hb9d3cd8_1
    - libnghttp2 1.64.0 h161d5f1_0
    - libopenblas 0.3.28 pthreads_h94d23a6_1
    - libpng 1.6.44 hadc24fc_0
    - libsanitizer 14.2.0 h2a3dede_1
    - libssh2 1.11.1 hf672d98_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-devel_linux-64 14.2.0 h41c2201_101
    - libstdcxx-ng 14.2.0 h4852527_1
    - libtiff 4.7.0 hd9ff511_3
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.4.0 hd590300_0
    - libxcb 1.17.0 h8a09558_0
    - libxml2 2.13.5 h8d12d68_1
    - libzlib 1.3.1 hb9d3cd8_2
    - make 4.4.1 hb9d3cd8_2
    - ncurses 6.5 he02047a_1
    - openssl 3.4.0 hb9d3cd8_0
    - pango 1.54.0 h861ebed_4
    - pcre2 10.44 hba22ea6_2
    - pixman 0.44.2 h29eaf8c_0
    - pthread-stubs 0.4 hb9d3cd8_1002
    - r-base 4.4.2 hc737e89_2
    - r-bh 1.87.0_1 r44hc72bb7e_0
    - r-bit 4.5.0.1 r44h2b5f3a1_0
    - r-bit64 4.5.2 r44h2b5f3a1_0
    - r-circlize 0.4.16 r44hc72bb7e_1
    - r-cli 3.6.3 r44h0d4f4ea_1
    - r-clue 0.3_66 r44h2b5f3a1_0
    - r-cluster 2.1.8 r44hb67ce94_0
    - r-codetools 0.2_20 r44hc72bb7e_1
    - r-colorspace 2.1_1 r44hdb488b9_0
    - r-cowplot 1.1.3 r44hc72bb7e_1
    - r-cpp11 0.5.1 r44hc72bb7e_0
    - r-crayon 1.5.3 r44hc72bb7e_1
    - r-digest 0.6.37 r44h0d4f4ea_0
    - r-doparallel 1.0.17 r44hc72bb7e_3
    - r-dplyr 1.1.4 r44h0d4f4ea_1
    - r-dqrng 0.3.2 r44h0d4f4ea_1
    - r-ellipsis 0.3.2 r44hb1dbf0f_3
    - r-fansi 1.0.6 r44hb1dbf0f_1
    - r-farver 2.1.2 r44ha18555a_1
    - r-fnn 1.1.4.1 r44h93ab643_0
    - r-foreach 1.5.2 r44hc72bb7e_3
    - r-generics 0.1.3 r44hc72bb7e_3
    - r-getoptlong 1.0.5 r44hc72bb7e_3
    - r-ggplot2 3.5.1 r44hc72bb7e_1
    - r-ggrepel 0.9.6 r44h93ab643_0
    - r-globaloptions 0.1.2 r44ha770c72_3
    - r-glue 1.8.0 r44h2b5f3a1_0
    - r-gridextra 2.3 r44hc72bb7e_1006
    - r-grr 0.9.5 r44h0d4f4ea_1007
    - r-gtable 0.3.6 r44hc72bb7e_0
    - r-hdf5r 1.3.11 r44h68ba781_2
    - r-ica 1.0_3 r44hc72bb7e_3
    - r-igraph 2.0.3 r44h510f1ce_1
    - r-irlba 2.3.5.1 r44h0d28552_3
    - r-isoband 0.2.7 r44ha18555a_3
    - r-iterators 1.0.14 r44hc72bb7e_3
    - r-labeling 0.4.3 r44hc72bb7e_1
    - r-lattice 0.22_6 r44hb1dbf0f_1
    - r-leidenalg 1.1.4 r44h93ab643_1
    - r-lifecycle 1.0.4 r44hc72bb7e_1
    - r-magrittr 2.0.3 r44hb1dbf0f_3
    - r-mass 7.3_60.0.1 r44hb1dbf0f_1
    - r-matrix 1.6_5 r44he966344_1
    - r-matrix.utils 0.9.8 r44hc72bb7e_4
    - r-matrixstats 1.4.1 r44h2b5f3a1_0
    - r-mclust 6.1.1 r44hc29710b_0
    - r-mgcv 1.9_1 r44h0d28552_1
    - r-munsell 0.5.1 r44hc72bb7e_1
    - r-nlme 3.1_165 r44hbcb9c34_1
    - r-pbmcapply 1.5.1 r44hdb488b9_3
    - r-pillar 1.10.0 r44hc72bb7e_0
    - r-pkgconfig 2.0.3 r44hc72bb7e_4
    - r-plyr 1.8.9 r44ha18555a_1
    - r-png 0.1_8 r44h21f035c_2
    - r-proc 1.18.5 r44ha18555a_1
    - r-r6 2.5.1 r44hc72bb7e_3
    - r-rann 2.6.2 r44h93ab643_0
    - r-rcolorbrewer 1.1_3 r44h785f33e_3
    - r-rcpp 1.0.13_1 r44h93ab643_0
    - r-rcppannoy 0.0.22 r44ha18555a_1
    - r-rcpparmadillo 14.2.2_1 r44hb79369c_0
    - r-rcppeigen 0.3.4.0.2 r44hb79369c_0
    - r-rcppprogress 0.4.2 r44hc72bb7e_4
    - r-rjson 0.2.23 r44h93ab643_0
    - r-rlang 1.1.4 r44ha18555a_1
    - r-rtsne 0.17 r44h4387864_1
    - r-scales 1.3.0 r44hc72bb7e_1
    - r-sccore 1.0.5 r44h0d4f4ea_1
    - r-shape 1.4.6.1 r44ha770c72_1
    - r-sitmo 2.0.2 r44h0d4f4ea_3
    - r-tibble 3.2.1 r44hdb488b9_3
    - r-tidyselect 1.2.1 r44hc72bb7e_1
    - r-utf8 1.2.4 r44hb1dbf0f_1
    - r-uwot 0.1.16 r44h0d4f4ea_1
    - r-vctrs 0.6.5 r44h0d4f4ea_1
    - r-viridis 0.6.5 r44hc72bb7e_1
    - r-viridislite 0.4.2 r44hc72bb7e_2
    - r-withr 3.0.2 r44hc72bb7e_0
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.17 h4a8ded7_18
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h8bc8fbc_6
    - tzdata 2024b hc8b5060_0
    - xorg-libice 1.1.2 hb9d3cd8_0
    - xorg-libsm 1.2.5 he73a12e_0
    - xorg-libx11 1.8.10 h4f16b4b_1
    - xorg-libxau 1.0.12 hb9d3cd8_0
    - xorg-libxdmcp 1.1.5 hb9d3cd8_0
    - xorg-libxext 1.3.6 hb9d3cd8_0
    - xorg-libxrender 0.9.12 hb9d3cd8_0
    - xorg-libxt 1.3.1 hb9d3cd8_0
    - zstd 1.5.6 ha6fb4c9_0
  run:
    - bioconductor-complexheatmap >=2.22.0,<2.23.0a0
    - bioconductor-s4vectors >=0.44.0,<0.45.0a0
    - libgcc >=13
    - libstdcxx >=13
    - r-base >=4.4,<4.5.0a0
    - r-base >=4.4,<4.5.0a0
    - r-circlize
    - r-cli
    - r-cowplot
    - r-dplyr
    - r-ggplot2
    - r-hdf5r
    - r-ica
    - r-irlba
    - r-leidenalg >=1.1.1
    - r-lifecycle
    - r-magrittr
    - r-matrix
    - r-mclust
    - r-rann
    - r-rcolorbrewer
    - r-rcpp >=0.12.10
    - r-rcpparmadillo
    - r-rcppprogress
    - r-rlang
    - r-rtsne
    - r-scales
    - r-uwot
    - r-viridis
test:
  commands:
    - $R -e "library('rliger')"
about:
  dev_url: https://github.com/MacoskoLab/liger
  doc_url: https://welch-lab.github.io/liger/index.html
  home: https://github.com/MacoskoLab/liger
  license: GPL-3.0-or-later
  license_family: GPL3
  license_file:
    - /opt/conda/conda-bld/r-liger_1734624850435/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/R/share/licenses/GPL-3
  summary: Uses an extension of nonnegative matrix factorization to identify shared
    and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>,
    and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for
    more details.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - doi:10.1016/j.cell.2019.05.006
  recipe-maintainers:
    - raivivek
    - theAeon
