._legendfun2            ._legendfun2
.mat                    .mat
.rescale01              .rescale01
GBAccession-class       GBAccession ID class
GenBankFile-class       GenBank File
GenBankRecord-class     GenBank data objects.
LDWeaver                LDWeaver
analyse_long_range_links
                        analyse_long_range_links
cleanup                 cleanup
cleanup_support         cleanup_support
create_network          create_network
create_network_for_gene
                        create_network_for_gene
create_tanglegram       create_tanglegram
estimate_Hamming_distance_weights
                        estimate_Hamming_distance_weights
estimate_variation_in_CDS
                        estimate_variation_in_CDS
generate_Links_SNPS_fasta
                        generate_Links_SNPS_fasta
genomewide_LDMap        genomewide_LDMap
make_gwes_plots         make_gwes_plots
parse_fasta_SNP_alignment
                        extractSNPs_from_SNP_MSA
parse_fasta_alignment   extractSNP_from_MSA
parse_genbank_file      parse_genbank_file
parse_gff_file          parse_gff_file
perform_MI_computation
                        perform_MI_computation
perform_snpEff_annotations
                        perform_snpEff_annotations
read_AnnotatedLinks     read_AnnotatedLinks
read_GFF3_Annotation    read_GFF3_Annotation
read_LongRangeLinks     read_LongRangeLinks
read_ReferenceFasta     read_ReferenceFasta
read_ShortRangeLinks    read_ShortRangeLinks
read_TopHits            read_TopHits
runARACNE               runARACNE
snpdat_to_fa            snpdat_to_fa
view_tree               view_tree
write_output_for_gwes_explorer
                        write_output_for_gwes_explorer
