Package: LDWeaver
Type: Package
Title: Genomewide Epistasis Analysis on Bacteria
Version: 1.4
Authors@R: person("Sudaraka", "Mallawaarachchi", email = "smallawaarachchi@gmail.com", role = c("aut", "cre"))
Maintainer: Sudaraka Mallawaarachchi <smallawaarachchi@gmail.com>
Description: Perform genomewide epistasis analysis by evaluating the LD structure in bacteria.
License: GPL (>=3) + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews: Software
Depends: R (>= 4.0.0),
Imports: ape, Biostrings, chromoMap, data.table, dplyr, fitdistrplus,
        GenomicRanges, GenomeInfoDb, ggnewscale, ggplot2, ggtree,
        ggraph, grDevices, heatmap3, htmlwidgets, igraph, IRanges,
        Matrix, MatrixExtra, methods, parallel, phytools, plyr,
        RColorBrewer, Rcpp, RcppArmadillo, S4Vectors, stats, utils,
        VariantAnnotation
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.2.3
URL: https://github.com/Sudaraka88/LDWeaver
BugReports: https://github.com/Sudaraka88/LDWeaver/issues
Biarch: TRUE
Author: Sudaraka Mallawaarachchi [aut, cre]
Built: R 4.3.2; x86_64-conda-linux-gnu; 2024-01-05 20:18:18 UTC; unix
