Package: harmony
Title: Fast, Sensitive, and Accurate Integration of Single Cell Data
biocViews: BatchEffect, GeneExpression, RNASeq, SingleCell,
        Transcriptomics
Version: 1.0
Authors@R: c(
    person("Ilya", "Korsunsky", email = "ilya.korsunsky@gmail.com", 
        role = c("cre", "aut"), comment = c(ORCID = "0000-0003-4848-3948")),
    person("Nghia", "Millard", email = "nmillard@g.harvard.edu", 
        role = "aut", comment = c(ORCID = "0000-0002-0518-7674")),
    person("Miles", "Smith", 
        role = c("ctb")),
    person("Soumya", "Raychaudhuri", 
        role = c("aut"), comment = c(ORCID = "0000-0002-1901-8265"))
    )
Description: Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi.org/10.1101/461954>. Package includes a standalone Harmony function and interfaces to external frameworks.
URL: software.broadinstitute.org/harmony
License: GPL-3 + file LICENSE
Encoding: UTF-8
RoxygenNote: 6.1.1
Depends: R(>= 3.4.0), Rcpp
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Imports: dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods,
        tibble, rlang
Suggests: Seurat, SingleCellExperiment, testthat, knitr, rmarkdown,
        BiocStyle
VignetteBuilder: knitr
Author: Ilya Korsunsky [cre, aut] (<https://orcid.org/0000-0003-4848-3948>),
  Nghia Millard [aut] (<https://orcid.org/0000-0002-0518-7674>),
  Miles Smith [ctb],
  Soumya Raychaudhuri [aut] (<https://orcid.org/0000-0002-1901-8265>)
Maintainer: Ilya Korsunsky <ilya.korsunsky@gmail.com>
Built: R 4.1.2; x86_64-conda-linux-gnu; 2022-02-27 18:04:50 UTC; unix
