Package: GenometriCorr
Type: Package
Title: Genometric Correlation package
Version: 1.1.17
Author@R: c( person("Alexander", "Favorov",email =
        "favorov@sensi.org"), person("Loris", "Mularoni"),
        person("Yulia","Medvedeva"), person("Harris","A.","Jaffee"),
        person("Ekaterina","V.","Zhuravleva"),
        person("Leslie","M.","Cope"), person("Andrey","A.","Mironov"),
        person("Vsevolod","J.","Makeev"),
        person("Sarah","J.","Wheelan") )
Author: Alexander Favorov, Loris Mularoni, Yulia Medvedeva, Harris A. Jaffee,
    Ekaterina V. Zhuravleva, Leslie M. Cope, 
		Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan
Maintainer: Alexander Favorov <favorov@sensi.org>
Description: The package computes correlations between two genome annotations
    (known features, experimental data etc) that are represented as intervals on
    chromosomes. The package provides several different tests, each chosen for
    its particular sensitivity to a type of spatial correlation. The overarching
    question is whether the two interval sets are spatially related in any way.
    Tests can also be restricted to genomic intervals (chromosomes, chromosome arms,
    genes only, etc) when appropriate. Various visualization methods are provided.
    We emphasize that the package is intended to be a hypothesis generator; users
    should plan to follow up on any correlations suggested by the software.
License: Artistic-2.0
LazyLoad: yes
Depends: IRanges, GenomicFeatures, GenomicRanges, methods, tcltk,
        S4Vectors, R (>= 3.1.0)
Imports: TxDb.Hsapiens.UCSC.hg19.knownGene, grDevices, gplots,
        GenomeInfoDb, rtracklayer, gdata
biocViews: Annotation, Genetics, Infrastructure, DataRepresentation,
        GenomeAnnotation, StatisticalMethod
URL: http://genometricorr.sourceforge.net/
Packaged: 2017-01-21 07:39:49 UTC; favorov
RoxygenNote: 5.0.1
NeedsCompilation: no
Built: R 3.3.2; ; 2018-05-02 17:01:25 UTC; unix
