# Cellular Fraction and Copy Numbers from Tumor Sequencing

## Documentation for package ‘facets’ version 0.6.2

- DESCRIPTION file.

## Help Pages

facets-package | Cellular Fraction and Copy Numbers from Tumor Sequencing
emcncf | EM estimate of copy number and cellular fraction of segment clusters
emcncf2 | Defunct functions in package 'facets'
facets | Cellular Fraction and Copy Numbers from Tumor Sequencing
fitcncf | Copy number and cellular fraction of segment clusters
logRlogORspider | Plot segment logR-logOR summary statistics
plotSample | Plot the data and results for a single sample
preProcSample | Pre-process a sample
procSample | Process a sample
readSnpMatrix | Read in the SNP read count matrix file
rePreProcSample | Re-(pre)-process a sample