Package: ExomeDepth
Type: Package
Title: Calls Copy Number Variants from Targeted Sequence Data
Version: 1.1.18
Date: 2025-2-9
Encoding: UTF-8
Depends: R (>= 3.4.0)
Imports: Biostrings, IRanges, Rsamtools, GenomicRanges (>= 1.23.0),
        aod, VGAM (>= 0.8.4), methods, GenomicAlignments, dplyr,
        magrittr
Suggests: knitr
VignetteBuilder: knitr
Authors@R: c(person("Vincent", "Plagnol", role = c("aut", "cre"), email = "vincent.plagnol@gmail.com"),
            person("Gerard", "Jungman", role = "ctb", comment = "Author of included GSL fragments"),
	    person("Brian", "Gough", role = "ctb", comment = "Author of included GSL fragments"),
   	    person(c("Jorma", "O"), "Tahtinen", role = "ctb", comment = "Author of included GSL fragments"),
      	    person("Gert", "Van den Eynde", role = "ctb", comment = "Author of included GSL fragments"))
Description: Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders. The method is presented in details in Plagnol et al (2012) <https://pubmed.ncbi.nlm.nih.gov/22942019/>.
License: GPL-3
Author: Vincent Plagnol [aut, cre],
  Gerard Jungman [ctb] (Author of included GSL fragments),
  Brian Gough [ctb] (Author of included GSL fragments),
  Jorma O Tahtinen [ctb] (Author of included GSL fragments),
  Gert Van den Eynde [ctb] (Author of included GSL fragments)
Maintainer: Vincent Plagnol <vincent.plagnol@gmail.com>
Built: R 4.4.3; x86_64-conda-linux-gnu; 2025-06-30 13:52:48 UTC; unix
