ExomeDepth-package	ExomeDepth-package
AddAnnotations,ExomeDepth-method	ExomeDepth-class
AnnotateExtra	AnnotateExtra
AnnotateExtra,ExomeDepth-method	AnnotateExtra-methods
AnnotateExtra-methods	AnnotateExtra-methods
CallCNVs	CallCNVs
CallCNVs,ExomeDepth-method	ExomeDepth-class
Conrad.hg19.common.CNVs	Conrad.hg19.common.CNVs
count.everted.reads	count.everted.reads
countBam.everted	countBam.everted
countBamInGRanges.exomeDepth	countBamInGRanges.exomeDepth
ExomeCount	ExomeCount
ExomeDepth	ExomeDepth-package
ExomeDepth-class	ExomeDepth-class
exons.hg19	exons.hg19
exons.hg19.X	exons.hg19.X
genes.hg19	genes.hg19
get.power.betabinom	get.power.betabinom
getBamCounts	getBamCounts
initialize,ExomeDepth-method	initialize-methods
initialize-methods	initialize-methods
plot,ANY-method	plot.ExomeDepth
plot,ExomeDepth,ANY-method	plot.ExomeDepth
plot,ExomeDepth-method	plot.ExomeDepth
plot-methods	plot.ExomeDepth
plot.ExomeDepth	plot.ExomeDepth
qbetabinom	qbetabinom
qbetabinom.ab	qbetabinom.ab
select.reference.set	select.reference.set
show,ExomeDepth-method	show-methods
show-methods	show-methods
somatic.CNV.call	somatic.CNV.call
TestCNV	TestCNV
TestCNV,ExomeDepth-method	ExomeDepth-class
viterbi.hmm	viterbi.hmm
