# Differential Binding of Transcription Factor with ChIP-seq

## Documentation for package ‘DBChIP’ version 1.1.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

DBChIP-package | DBChIP-package
binding.site.list | Binding site predictions
chip.data.list | ChIP data of transcription factor PHA-4/FOXA in _C.elegans_
conds | conds
DBChIP | DBChIP
get.site.count | Get site count
input.data.list | Control/input data of transcription factor PHA-4/FOXA in _C.elegans_
load.data | load.data
PHA4 | ChIP-seq data of transcription factor PHA-4/FOXA in _C.elegans_
plotPeak | Plot peak
read.binding.site.list | read.binding.site.list
report.peak | Report peaks
site.merge | Cluster close-by sites into consensus sites
test.diff.binding | Test for differential binding