Package: CRBHits
Title: Conditional reciprocal best hits (CRBHits) in R
Version: 0.0.4
Authors@R: 
    person(given = "Kristian K",
           family = "Ullrich",
           role = c("aut", "cre"),
           email = "ullrich@evolbio.mpg.de",
           comment = c(ORCID = "0000-0003-4308-9626"))
Description: CRBHits calculates conditional reciprocal best hit (CRBHit) pairs
    and subsequently can classify tandem duplicates, assign syntney groups and
    calculate Ka/Ks values.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0.0)
Imports: Biostrings, ape, curl, doParallel, dplyr, foreach, ggplot2,
        graphics, gridExtra, grDevices, methods, parallel, rlang,
        seqinr, stats, stringi, stringr, tibble, tidyr, utils
Suggests: rmarkdown, knitr, devtools, testthat
VignetteBuilder: knitr
biocViews: Software, Alignment, Genetics
NeedsCompilation: yes
SystemRequirements: LAST (https://anaconda.org/bioconda/last),
        KaKs_Calculator2.0
        (https://anaconda.org/bioconda/kakscalculator2), DAGchainer
        (https://anaconda.org/bioconda/dagchainer), GNU make, libcurl
        (deb: libcurl4-openssl-dev or CentOS: libcurl-devel), openssl
        (deb: libssl-dev or CentOS: openssl-devel), libxml2 (deb:
        libxml2-dev or CentOS: libxml2-devel), libGLU (deb:
        libglu1-mesa-dev or CentOS: mesa-libGLU-devel), libgit2-devel
        (deb: libgit2-dev or CentOS: libgit2-devel)
URL: https://gitlab.gwdg.de/mpievolbio-it/crbhits,
        https://mpievolbio-it.pages.gwdg.de/crbhits/
BugReports: https://gitlab.gwdg.de/mpievolbio-it/crbhits/issues
RoxygenNote: 7.1.2
Author: Kristian K Ullrich [aut, cre] (<https://orcid.org/0000-0003-4308-9626>)
Maintainer: Kristian K Ullrich <ullrich@evolbio.mpg.de>
Built: R 4.3.1; ; 2023-07-16 12:35:54 UTC; unix
