aa2rbh	aa2rbh
aabin2aastring	aabin2aastring
aafile2rbh	aafile2rbh
aastring2aabin	aastring2aabin
aastring2aln	aastring2aln
aln2aastring	aln2aastring
aln2dnastring	aln2dnastring
aly	aly-data
aly-data	aly-data
ath	ath-data
ath-data	ath-data
ath_aly_crbh	ath_aly_crbh-data
ath_aly_crbh-data	ath_aly_crbh-data
ath_aly_ncbi_dagchainer	ath_aly_ncbi_dagchainer-data
ath_aly_ncbi_dagchainer-data	ath_aly_ncbi_dagchainer-data
ath_aly_ncbi_kaks	ath_aly_ncbi_kaks-data
ath_aly_ncbi_kaks-data	ath_aly_ncbi_kaks-data
cds2aa	cds2aa
cds2codonaln	cds2codonaln
cds2genepos	cds2genepos
cds2kaks	cds2kaks
cds2rbh	cds2rbh
cdsfile2aafile	cdsfile2aafile
cdsfile2rbh	cdsfile2rbh
codon2number	GENETIC_CODE_TCAG
codon2numberAMBIG	codon2numberAMBIG
codon2numberTCAG	codon2numberTCAG
codonmat2pnps	codonmat2pnps
codonmat2xy	codonmat2xy
col2transparent	col2transparent
compareCodons	compareCodons
CRBHitsColors	CRBHitsColors
dnabin2dnastring	dnabin2dnastring
dnastring2aln	dnastring2aln
dnastring2codonmat	dnastring2codonmat
dnastring2dnabin	dnastring2dnabin
dnastring2kaks	dnastring2kaks
filter_alnlen	filter_alnlen
filter_eval	filter_eval
filter_pident	filter_pident
filter_qcov	filter_qcov
filter_rost1999	filter_rost1999
filter_tcov	filter_tcov
GENETIC_CODE_TCAG	GENETIC_CODE_TCAG
gff2longest	gff2longest
globalDeletion	globalDeletion
gtf2longest	gtf2longest
hiv	hiv-data
hiv-data	hiv-data
hom_pan_ensembl_kaks	hom_pan_ensembl_kaks-data
hom_pan_ensembl_kaks-data	hom_pan_ensembl_kaks-data
isoform2longest	isoform2longest
makePostalignedSeqs	makePostalignedSeqs
make_dagchainer	make_dagchainer
make_KaKs_Calculator2	make_KaKs_Calculator2
make_last	make_last
make_vignette	make_vignette
plot_dagchainer	plot_dagchainer
plot_kaks	plot_kaks
rbh2dagchainer	rbh2dagchainer
rbh2kaks	rbh2kaks
seqid	seqid
subString	subString
tandemdups	tandemdups
uptriidx	uptriidx
