Package: CDSeq
Type: Package
Title: A Complete Deconvolution Method using Sequencing Data
Depends: R (>= 3.6.0)
biocViews:
Version: 1.0.9
Date: 2021-03-12
Authors@R: c(person("Kai", "Kang", email = "kangkai0714@gmail.com", role = c("aut", "cre","cph")),
             person("Caizhi", "Huang", email = "chuang19@ncsu.edu", role = "aut"),
             person("Qian","Meng", role="ctb"), 
             person("Igor","Shats", role="ctb"),
             person("Melissa","Li", role="ctb"),
             person("David","Umbach",role="ctb"),
             person("Leping","Li", role=c("aut","cph")),
             person("Yuanyuan","Li", role="ctb"),
             person("Xiaoling","Li", role="ctb"))
Maintainer: Kai Kang <kangkai0714@gmail.com>
Description: Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>. 
License: GPL-3
Imports: Rcpp (>= 1.0.3), MASS, foreach, doParallel, dirmult,
        RcppThread, iterators, parallel, grDevices, Seurat, ggplot2,
        magrittr, dplyr, rlang, Matrix, matrixStats, ggpubr, pheatmap,
        harmony
Remotes: github::PelzKo/harmony
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: gplots, clue, Biobase, qlcMatrix, knitr, rmarkdown, testthat
        (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/kkang7/CDSeq_R_Package,
        https://doi.org/10.1371/journal.pcbi.1007510
BugReports: https://github.com/kkang7/CDSeq_R_Package/issues
Config/testthat/edition: 3
Author: Kai Kang [aut, cre, cph],
  Caizhi Huang [aut],
  Qian Meng [ctb],
  Igor Shats [ctb],
  Melissa Li [ctb],
  David Umbach [ctb],
  Leping Li [aut, cph],
  Yuanyuan Li [ctb],
  Xiaoling Li [ctb]
Built: R 4.1.3; x86_64-conda-linux-gnu; 2022-07-19 09:51:38 UTC; unix
