# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Jun  3 19:20:55 2024
# ------------------------------------------------

package:
  name: python-bioext
  version: 0.21.7
source:
  patches:
    - cythonize.patch
  sha256: 2265c9b6cb5b4a6400635a5d21f32ca1d693b97431ad188965150fc5d6b28ab6
  url: https://pypi.io/packages/source/B/BioExt/bioext-0.21.7.tar.gz
build:
  number: '0'
  run_exports:
    - python-bioext >=0.21.7,<0.22.0a0
  string: py310h748d2df_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.40 ha1999f0_1
    - binutils_linux-64 2.40 hdade7a5_3
    - gcc_impl_linux-64 12.3.0 h58ffeeb_7
    - gcc_linux-64 12.3.0 h6477408_3
    - gxx_impl_linux-64 12.3.0 h2a574ab_7
    - gxx_linux-64 12.3.0 h4a1b8e8_3
    - kernel-headers_linux-64 2.6.32 he073ed8_17
    - ld_impl_linux-64 2.40 hf3520f5_1
    - libgcc-devel_linux-64 12.3.0 h0223996_107
    - libgcc-ng 13.2.0 h77fa898_7
    - libgomp 13.2.0 h77fa898_7
    - libsanitizer 12.3.0 hb8811af_7
    - libstdcxx-devel_linux-64 12.3.0 h0223996_107
    - libstdcxx-ng 13.2.0 hc0a3c3a_7
    - sysroot_linux-64 2.12 he073ed8_17
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - biopython 1.83 py310h2372a71_0
    - bzip2 1.0.8 hd590300_5
    - c-ares 1.28.1 hd590300_0
    - ca-certificates 2024.6.2 hbcca054_0
    - cython 3.0.10 py310hc6cd4ac_0
    - freetype 2.12.1 h267a509_2
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.2 h659d440_0
    - ld_impl_linux-64 2.40 hf3520f5_1
    - libblas 3.9.0 22_linux64_openblas
    - libcblas 3.9.0 22_linux64_openblas
    - libcurl 8.8.0 hca28451_0
    - libdeflate 1.20 hd590300_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 hd590300_2
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 13.2.0 h77fa898_7
    - libgfortran-ng 13.2.0 h69a702a_7
    - libgfortran5 13.2.0 hca663fb_7
    - libgomp 13.2.0 h77fa898_7
    - liblapack 3.9.0 22_linux64_openblas
    - libnghttp2 1.58.0 h47da74e_1
    - libnsl 2.0.1 hd590300_0
    - libopenblas 0.3.27 pthreads_h413a1c8_0
    - libpng 1.6.43 h2797004_0
    - libsqlite 3.45.3 h2797004_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-ng 13.2.0 hc0a3c3a_7
    - libuuid 2.38.1 h0b41bf4_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.2.13 h4ab18f5_6
    - ncurses 6.5 h59595ed_0
    - numpy 1.26.4 py310hb13e2d6_0
    - openssl 3.3.0 h4ab18f5_3
    - pip 24.0 pyhd8ed1ab_0
    - pysam 0.22.1 py310h41dec4a_0
    - python 3.10.14 hd12c33a_0_cpython
    - python_abi 3.10 4_cp310
    - readline 8.2 h8228510_1
    - scipy 1.13.1 py310h93e2701_0
    - setuptools 70.0.0 pyhd8ed1ab_0
    - tk 8.6.13 noxft_h4845f30_101
    - tzdata 2024a h0c530f3_0
    - wheel 0.43.0 pyhd8ed1ab_1
    - xz 5.2.6 h166bdaf_0
    - zstd 1.5.6 ha6fb4c9_0
  run:
    - biopython >=1.58
    - freetype >=2.12.1,<3.0a0
    - joblib
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - numpy >1.20.3
    - numpy >=1.26.4,<2.0a0
    - pysam >=0.22.1,<0.23.0a0
    - python >=3.10,<3.11.0a0
    - python_abi 3.10.* *_cp310
    - scipy
    - six
test:
  commands:
    - bam2fna 2>&1 | grep 'usage' > /dev/null
    - bam2msa 2>&1 | grep 'usage' > /dev/null
    - bealign 2>&1 | grep 'usage' > /dev/null
    - clipedge 2>&1 | grep 'usage' > /dev/null
    - msa2bam 2>&1 | grep 'usage' > /dev/null
    - seqmerge 2>&1 | grep 'usage' > /dev/null
  imports:
    - BioExt
    - BioExt.align
    - BioExt.args
    - BioExt.collections
    - BioExt.errorize
    - BioExt.freetype
    - BioExt.freetype.ft_enums
    - BioExt.io
    - BioExt.io.BamIO
    - BioExt.io.LazyAlignIO
    - BioExt.io.SamIO
    - BioExt.merge
    - BioExt.misc
    - BioExt.ndarray
    - BioExt.optimize
    - BioExt.orflist
    - BioExt.phylo
    - BioExt.rateclass
    - BioExt.references
    - BioExt.scorematrices
    - BioExt.stats
    - BioExt.tn93
    - BioExt.uds
    - BioExt.untranslate
about:
  home: https://github.com/veg/BioExt.git
  license: GPL-3
  license_family: GPL3
  summary: A few handy bioinformatics tools not already in BioPython
extra:
  copy_test_source_files: true
  final: true
