recipe_sha: 7d5acc4e24406ece2915a9b9293f2f8f8ef6e0f5e1f000a11899c0bd5e936e8c  # The commit at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
  bin/clipedge (text): Patching
  bin/consensus (text): Patching
  bin/msa2bam (text): Patching
  bin/seqmerge (text): Patching
  bin/translate (text): Patching
  etc/conda/activate.d/python-bioext_activate.sh (text): Patching
  TEST START: /opt/mambaforge/envs/bioconda/conda-bld/osx-64/python-bioext-0.20.4-py310hde71c8b_4.tar.bz2
  INFO:conda_build.utils:Renaming work directory '/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work' to '/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work_moved_python-bioext-0.20.4-py310hde71c8b_4_osx-64'
  Renaming work directory '/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work' to '/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work_moved_python-bioext-0.20.4-py310hde71c8b_4_osx-64'
  shutil.move(work)=/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work, dest=/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work_moved_python-bioext-0.20.4-py310hde71c8b_4_osx-64)
  INFO:conda_build.utils:shutil.move(work)=/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work, dest=/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/work_moved_python-bioext-0.20.4-py310hde71c8b_4_osx-64)
  Reloading output folder: /opt/mambaforge/envs/bioconda/conda-bld

  ## Package Plan ##

    environment location: /opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place


  The following NEW packages will be INSTALLED:

      biopython:          1.81-py310h90acd4f_0       conda-forge
      brotli:             1.0.9-hb7f2c08_8           conda-forge
      brotli-bin:         1.0.9-hb7f2c08_8           conda-forge
      bzip2:              1.0.8-h0d85af4_4           conda-forge
      c-ares:             1.19.1-h0dc2134_0          conda-forge
      ca-certificates:    2023.5.7-h8857fd0_0        conda-forge
      certifi:            2023.5.7-pyhd8ed1ab_0      conda-forge
      charset-normalizer: 3.1.0-pyhd8ed1ab_0         conda-forge
      freetype:           2.12.1-h3f81eb7_1          conda-forge
      idna:               3.4-pyhd8ed1ab_0           conda-forge
      joblib:             1.2.0-pyhd8ed1ab_0         conda-forge
      krb5:               1.20.1-h049b76e_0          conda-forge
      libblas:            3.9.0-16_osx64_openblas    conda-forge
      libbrotlicommon:    1.0.9-hb7f2c08_8           conda-forge
      libbrotlidec:       1.0.9-hb7f2c08_8           conda-forge
      libbrotlienc:       1.0.9-hb7f2c08_8           conda-forge
      libcblas:           3.9.0-16_osx64_openblas    conda-forge
      libcurl:            8.1.2-hbee3ae8_0           conda-forge
      libcxx:             16.0.4-hd57cbcb_0          conda-forge
      libdeflate:         1.18-hac1461d_0            conda-forge
      libedit:            3.1.20191231-h0678c8f_2    conda-forge
      libev:              4.33-haf1e3a3_1            conda-forge
      libffi:             3.4.2-h0d85af4_5           conda-forge
      libgfortran:        5.0.0-11_3_0_h97931a8_31   conda-forge
      libgfortran5:       12.2.0-he409387_31         conda-forge
      liblapack:          3.9.0-16_osx64_openblas    conda-forge
      libnghttp2:         1.52.0-he2ab024_0          conda-forge
      libopenblas:        0.3.21-openmp_h429af6e_3   conda-forge
      libpng:             1.6.39-ha978bb4_0          conda-forge
      libsqlite:          3.42.0-h58db7d2_0          conda-forge
      libssh2:            1.10.0-h47af595_3          conda-forge
      libzlib:            1.2.13-hfd90126_4          conda-forge
      llvm-openmp:        16.0.4-hff08bdf_0          conda-forge
      ncurses:            6.3-h96cf925_1             conda-forge
      numpy:              1.24.3-py310h7451ae0_0     conda-forge
      openssl:            3.1.1-h8a1eda9_1           conda-forge
      packaging:          23.1-pyhd8ed1ab_0          conda-forge
      platformdirs:       3.5.1-pyhd8ed1ab_0         conda-forge
      pooch:              1.7.0-pyha770c72_3         conda-forge
      pysam:              0.21.0-py310h2f18660_1     bioconda
      pysocks:            1.7.1-pyha2e5f31_6         conda-forge
      python:             3.10.11-he7542f4_0_cpython conda-forge
      python-bioext:      0.20.4-py310hde71c8b_4     local
      python_abi:         3.10-3_cp310               conda-forge
      readline:           8.2-h9e318b2_1             conda-forge
      requests:           2.31.0-pyhd8ed1ab_0        conda-forge
      scipy:              1.10.1-py310h3900cf1_3     conda-forge
      setuptools:         67.7.2-pyhd8ed1ab_0        conda-forge
      six:                1.16.0-pyh6c4a22f_0        conda-forge
      tk:                 8.6.12-h5dbffcc_0          conda-forge
      typing-extensions:  4.6.2-hd8ed1ab_0           conda-forge
      typing_extensions:  4.6.2-pyha770c72_0         conda-forge
      tzdata:             2023c-h71feb2d_0           conda-forge
      urllib3:            2.0.2-pyhd8ed1ab_0         conda-forge
      xz:                 5.2.6-h775f41a_0           conda-forge
      zlib:               1.2.13-hfd90126_4          conda-forge
      zstd:               1.5.2-hbc0c0cd_6           conda-forge

  Preparing transaction: ...working... done
  Verifying transaction: ...working... done
  Executing transaction: ...working... done
  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place
  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/test_tmp
  import: 'BioExt'
  import: 'BioExt.align'
  Traceback (most recent call last):
    File "/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/test_tmp/run_test.py", line 5, in <module>
      import BioExt.align
    File "/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.10/site-packages/BioExt/align/__init__.py", line 14, in <module>
      from BioExt.align._align import _align, _compute_codon_matrices
    File "BioExt/align/_align.pyx", line 12, in init BioExt.align._align
    File "/opt/mambaforge/envs/bioconda/conda-bld/python-bioext_1685553363523/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.10/site-packages/numpy/__init__.py", line 305, in __getattr__
      raise AttributeError(__former_attrs__[attr])
  AttributeError: module 'numpy' has no attribute 'int'.
  np.int was a deprecated alias for the builtin int. To avoid this error in existing code, use int by itself. Doing this will not modify any behavior and is safe. When replacing np.int, you may wish to use e.g. np.int64 or np.int32 to specify the precision. If you wish to review your current use, check the release note link for additional information.
  The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
      https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
  Tests failed for python-bioext-0.20.4-py310hde71c8b_4.tar.bz2 - moving package to /opt/mambaforge/envs/bioconda/conda-bld/broken
  WARNING:conda_build.build:Tests failed for python-bioext-0.20.4-py310hde71c8b_4.tar.bz2 - moving package to /opt/mambaforge/envs/bioconda/conda-bld/broken
  TESTS FAILED: python-bioext-0.20.4-py310hde71c8b_4.tar.bz2
# Last 100 lines of the build log.
