# This file created by conda-build 2.1.18
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Feb  1 18:56:26 2018
# ------------------------------------------------

package:
    name: python-bioext
    version: 0.18.6
source:
    sha256: 5004de2a01f85db4e8bbfe04741eba1af6797deea850c097fea2874694603c31
    url: https://github.com/veg/BioExt/archive/0.18.6.tar.gz
build:
    noarch: ''
    noarch_python: false
    number: '0'
    string: py35_0
requirements:
    build:
        - freetype 2.8.1 0
        - libstdcxx-ng 7.2.0 h7a57d05_2
        - wheel 0.30.0 py35_2
        - icu 56.1 4
        - mpfr 3.1.5 0
        - htslib 1.5 0
        - libpng 1.6.34 0
        - biopython 1.68 py35_0
        - xz 5.2.3 0
        - ca-certificates 2017.11.5 0
        - cloog 0.18.0 0
        - isl 0.12.2 0
        - openssl 1.0.2n 0
        - mpc 1.0.3 4
        - openblas 0.2.20 7
        - readline 7.0 0
        - bzip2 1.0.6 1
        - zlib 1.2.11 0
        - libgcc-ng 7.2.0 h7cc24e2_2
        - setuptools 38.4.0 py35_0
        - six 1.11.0 py35_1
        - scipy 1.0.0 py35_blas_openblas_201
        - numpy 1.14.0 py35_blas_openblas_200
        - tk 8.6.7 0
        - gmp 6.1.2 0
        - jpeg 9b 2
        - certifi 2017.11.5 py35_0
        - msgpack-python 0.5.1 py35_0
        - python-consensuscore 1.0.2 boost1.61py35_0
        - bcftools 1.5 3
        - pcre 8.39 0
        - libssh2 1.8.0 2
        - samtools 1.5 1
        - gcc 4.8.5 7
        - libgcc 7.2.0 h69d50b8_2
        - blas 1.1 openblas
        - pip 9.0.1 py35_1
        - krb5 1.14.2 0
        - reportlab 3.4.0 py35_0
        - libgfortran 3.0.0 1
        - olefile 0.44 py35_0
        - swig 3.0.12 2
        - python 3.5.4 3
        - boost 1.61.0 py35_1
        - ncurses 5.9 10
        - curl 7.55.1 0
        - pysam 0.12.0.1 py35_htslib1.5_1
        - pillow 5.0.0 py35_0
        - mmtf-python 1.0.2 py35_0
        - sqlite 3.20.1 2
        - libtiff 4.0.9 0
    run:
        - libgcc
        - freetype
        - python
        - biopython
        - pysam <=0.13
        - numpy >=1.14.0
        - scipy
        - six
        - python-consensuscore
test:
    commands:
        - bam2fna 2>&1 | grep 'usage' > /dev/null
        - bam2msa 2>&1 | grep 'usage' > /dev/null
        - bealign 2>&1 | grep 'usage' > /dev/null
        - clipedge 2>&1 | grep 'usage' > /dev/null
        - consensus 2>&1 | grep 'usage' > /dev/null
        - msa2bam 2>&1 | grep 'usage' > /dev/null
        - seqmerge 2>&1 | grep 'usage' > /dev/null
    imports:
        - BioExt
        - BioExt.align
        - BioExt.args
        - BioExt.collections
        - BioExt.errorize
        - BioExt.freetype
        - BioExt.freetype.ft_enums
        - BioExt.io
        - BioExt.io.BamIO
        - BioExt.io.LazyAlignIO
        - BioExt.io.SamIO
        - BioExt.joblib
        - BioExt.joblib.test
        - BioExt.merge
        - BioExt.misc
        - BioExt.ndarray
        - BioExt.optimize
        - BioExt.orflist
        - BioExt.phylo
        - BioExt.quiver
        - BioExt.rateclass
        - BioExt.references
        - BioExt.scorematrices
        - BioExt.stats
        - BioExt.uds
        - BioExt.untranslate
about:
    home: https://github.com/veg/BioExt.git
    license: GPL-3
    summary: A few handy bioinformatics tools not already in BioPython
extra:
    final: true
