#Function	Subsystem	Classification 1	Classification 2
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide_reductase_cluster	Clustering-based subsystems	
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide_reductase_cluster	Clustering-based subsystems	
FIG001676: Ferredoxin	Ribonucleotide_reductase_cluster	Clustering-based subsystems	
hypothetical protein related to DNA replication/repair	A_hypothetical_related_to_DNA_replication_and_repair	Clustering-based subsystems	
DNA polymerase-like protein PA0670	A_hypothetical_related_to_DNA_replication_and_repair	Clustering-based subsystems	
DNA polymerase III alpha subunit (EC 2.7.7.7)	A_hypothetical_related_to_DNA_replication_and_repair	Clustering-based subsystems	
Glycerate kinase (EC 2.7.1.31)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Aldehyde dehydrogenase B (EC 1.2.1.22)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Alcohol dehydrogenase (EC 1.1.1.1)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol kinase (EC 2.7.1.30)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphate:acyl-ACP acyltransferase PlsX	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Acyl carrier protein	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Diacylglycerol kinase (EC 2.7.1.107)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidylserine decarboxylase (EC 4.1.1.65)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidylglycerophosphatase A (EC 3.1.3.27)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidylglycerophosphatase B (EC 3.1.3.27)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Cardiolipin synthetase (EC 2.7.8.-)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Aldehyde dehydrogenase (EC 1.2.1.3)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Dihydroxyacetone kinase family protein	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Alpha-glycerophosphate oxidase (EC 1.1.3.21)	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Possible divergent polysaccharide deacetylase	CBSS-224911.1.peg.435	Clustering-based subsystems	
FIG000735: Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)	CBSS-224911.1.peg.435	Clustering-based subsystems	
Carboxyl-terminal protease (EC 3.4.21.102)	CBSS-224911.1.peg.435	Clustering-based subsystems	
Peptidase M23B precursor	CBSS-224911.1.peg.435	Clustering-based subsystems	
Uncharacterized protein YqeC	CBSS-155864.1.peg.3753	Clustering-based subsystems	
Uncharacterized protein YqeB	CBSS-155864.1.peg.3753	Clustering-based subsystems	
SsnA protein	CBSS-155864.1.peg.3753	Clustering-based subsystems	
CTP:molybdopterin cytidylyltransferase	CBSS-155864.1.peg.3753	Clustering-based subsystems	
Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)	CBSS-155864.1.peg.3753	Clustering-based subsystems	
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	CBSS-155864.1.peg.3753	Clustering-based subsystems	
Pyridine nucleotide-disulphide oxidoreductase family protein associated with PFOR	CBSS-155864.1.peg.3753	Clustering-based subsystems	
Pyridine nucleotide-disulphide oxidoreductase domain protein	CBSS-155864.1.peg.3753	Clustering-based subsystems	
Inner membrane protein translocase component YidC, long form	Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD	Virulence	
RNA-binding protein Jag	Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD	Virulence	
Protein YidD	Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD	Virulence	
Inner membrane protein translocase component YidC, short form OxaI-like	Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD	Virulence	
LSU ribosomal protein L1p (L10Ae)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L2p (L8e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L3p (L3e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L4p (L1e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L5p (L11e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L6p (L9e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L7/L12 (P1/P2)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L9p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L10p (P0)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L11p (L12e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L13p (L13Ae)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L14p (L23e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L15p (L27Ae)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L16p (L10e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L17p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L18p (L5e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L19p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L20p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L21p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L22p (L17e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L23p (L23Ae)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L24p (L26e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L25p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L27p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L29p (L35e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L30p (L7e)	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L33p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L34p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L35p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36p	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
Firmicutes ribosomal L7Ae family protein	Ribospme_LSU_Symbiont	Protein Metabolism	Protein biosynthesis
Methanol:corrinoid methyltransferase	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Methanol methyltransferase corrinoid protein	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Methylcobalamin:coenzyme M methyltransferase, methanol-specific	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Monomethylamine permease	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Monomethylamine:corrinoid methyltransferase	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Monomethylamine methyltransferase corrinoid protein	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Dimethylamine permease	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Dimethylamine:corrinoid methyltransferase	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Dimethylamine methyltransferase corrinoid protein	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Trimethylamine permease	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Trimethylamine:corrinoid methyltransferase	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Trimethylamine methyltransferase corrinoid protein	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Methylcobalamin:coenzyme M methyltransferase, methylamine-specific	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
pyrrolysine-containing	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Methylthiol:coenzyme M methyltransferase	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Methylthiol:coenzyme M methyltransferase corrinoid protein	Methanogenesis_from_methylated_compounds	Carbohydrates	One-carbon Metabolism
Chaperone HdeA	Periplasmic_Acid_Stress_Response_in_Enterobacteria	Stress Response	Periplasmic Stress
Chaperone HdeB	Periplasmic_Acid_Stress_Response_in_Enterobacteria	Stress Response	Periplasmic Stress
Membrane transporter HdeD, H-NS repressed	Periplasmic_Acid_Stress_Response_in_Enterobacteria	Stress Response	Periplasmic Stress
Putative membrane transporter ATPase,YhiD	Periplasmic_Acid_Stress_Response_in_Enterobacteria	Stress Response	Periplasmic Stress
Transcriptional activator GadE	Periplasmic_Acid_Stress_Response_in_Enterobacteria	Stress Response	Periplasmic Stress
Anti anti-sigma regulatory factor SypA	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Outer membrane protein SypB	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Periplasmic protein SypC involved in polysaccharide export	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Predicted protein SypD	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Response regulator SypE	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Signal transduction histidine kinase SypF	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Sigma-54 dependent transcriptional regulator SypG	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Glycosyltransferase (EC 2.4.1.-) SypH	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Glycosyltransferase (EC 2.4.1.-) SypI	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Glycosyltransferase (EC 2.4.1.-) SypJ	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Oligosaccharide translocase SypK	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Membrane protein SypL involved in exopolysaccharide production	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Acetyltransferase SypM	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Glycosyltransferase SypN	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Polysaccharide biosynthesis chain length regulator SypO	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Glycosyltransferase SypP	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Glycosyltransferase SypQ	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Sugar transferase SypR involved in lipopolysaccharide synthesis	Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster	Regulation and Cell signaling	Quorum sensing and biofilm formation
Quercetin 3-O-methyltransferase 1 (EC 2.1.1.76)	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Dihydroflavonol-4-reductase (EC 1.1.1.219)	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Leucoanthocyanidin dioxygenase (EC 1.14.11.19)	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Putative anthocyanin 5-aromatic acyltransferase	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Flavonol 3-O-glucosyide L-rhamnosyltransferase (EC 2.4.1.159)	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Flavanone-3-hydroxylase (EC 1.14.13.21)	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Production of anthocyanin pigment 1 protein	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
production of anthocyanin pigment 2 protein (PAP2)	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Flavonol 3-O-glucosyltransferase (EC 2.4.1.91), putative	Anthocyanin_biosynthesis	Experimental Subsystems	Proposed Subsystem
Paratox	Prophage_lysogenic_conversion_modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage hyaluronidase	Prophage_lysogenic_conversion_modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage-associated cell wall hydrolase	Prophage_lysogenic_conversion_modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
_Toximoron (Other)	Prophage_lysogenic_conversion_modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
_Toximoron (Superantigen)	Prophage_lysogenic_conversion_modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Holin	Prophage_lysogenic_conversion_modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose/maltodextrin ABC transporter, permease protein MalF	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose/maltodextrin ABC transporter, permease protein MalG	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Glycogen phosphorylase (EC 2.4.1.1)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Malto-oligosyltrehalose synthase (EC 5.4.99.15)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Alpha-amylase (EC 3.2.1.1)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose operon periplasmic protein MalM	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Transcriptional activator of maltose regulon, MalT	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Oligo-1,6-glucosidase (EC 3.2.1.10)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Neopullulanase (EC 3.2.1.135)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-phosphoglucomutase (EC 5.4.2.6)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltodextrin glucosidase (EC 3.2.1.20)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Alpha-glucosidase (EC 3.2.1.20)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Periplasmic alpha-amylase (EC 3.2.1.1)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose regulon modulator	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose-6'-phosphate glucosidase (EC 3.2.1.122)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose regulon regulatory protein MalI (repressor for malXY)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Cytoplasmic alpha-amylase (EC 3.2.1.1)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Aldose 1-epimerase (EC 5.1.3.3)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltodextrin phosphorylase (EC 2.4.1.1)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Glucoamylase (EC 3.2.1.3)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Multiple sugar ABC transporter, ATP-binding protein	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose phosphorylase (EC 2.4.1.8)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Transcriptional regulator YcjW, LacI family, possibly involved in maltodextrin utilization pathway	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Putative oxidoreductase YcjS (EC 1.-.-.-), NADH-binding	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Sugar phosphate isomerases/epimerases family protein YcjR	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Zinc-type alcohol dehydrogenase YcjQ	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Putative sucrose phosphorylase (EC 2.4.1.7)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Inner membrane ABC transporter permease protein YcjP	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Inner membrane ABC transporter permease protein YcjO	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
ABC-type sugar transport system, periplasmic binding protein YcjN	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose O-acetyltransferase (EC 2.3.1.79)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose operon transcriptional repressor MalR, LacI family	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltodextrose utilization protein MalA	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose/maltodextrin ABC transporter 2, permease protein MalF2	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose/maltodextrin ABC transporter 2, permease protein MalG2	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose/maltodextrin ABC transporter 2, substrate binding periplasmic protein MalE2	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Pullulanase (EC 3.2.1.41)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose oligosaccharide ABC transporter, substrate binding periplasmic protein MalE1	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose oligosaccharide ABC transporter, permease protein MalF1	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose oligosaccharide ABC transporter, permease protein MalG1	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
4-alpha-glucanotransferase MgtA (EC 2.4.1.25)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Maltodextrin glycosyltransferase MmtA	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, maltose and glucose-specific IIA component (EC 2.7.1.69)	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted maltose-specific TonB-dependent receptor	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Transcriptional regulator of maltose utilization, LacI family	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted glucose transporter in maltodextrin utilization gene cluster	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted maltose transporter MalT	Maltose_and_Maltodextrin_Utilization	Carbohydrates	Di- and oligosaccharides
HipA protein	Persister_Cells	Dormancy and Sporulation	
Cell division inhibitor	Persister_Cells	Dormancy and Sporulation	
Ribosome modulation factor	Persister_Cells	Dormancy and Sporulation	
HipB protein	Persister_Cells	Dormancy and Sporulation	
Foxred 1 homolog	Foxred1	Experimental Subsystems	
ATP-dependent helicase DinG/Rad3	CBSS-211586.9.peg.1632	Clustering-based subsystems	
FIG011065: hypothetical protein	CBSS-211586.9.peg.1632	Clustering-based subsystems	
Primosomal replication protein N prime prime	CBSS-211586.9.peg.1632	Clustering-based subsystems	
Putative stomatin/prohibitin-family membrane protease subunit aq_911	Rtc	RNA Metabolism	RNA processing and modification
Translation elongation factor LepA	Rtc	RNA Metabolism	RNA processing and modification
Protein RtcB	Rtc	RNA Metabolism	RNA processing and modification
Protein with similarity to RtcB	Rtc	RNA Metabolism	RNA processing and modification
RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)	Rtc	RNA Metabolism	RNA processing and modification
Uncharacterized acetyltransferase YafP (EC 2.3.1.-)	Rtc	RNA Metabolism	RNA processing and modification
COG3541: Predicted nucleotidyltransferase	Rtc	RNA Metabolism	RNA processing and modification
RNA-2',3'-PO4:RNA-5'-OH ligase	Rtc	RNA Metabolism	RNA processing and modification
Archease	Rtc	RNA Metabolism	RNA processing and modification
Phosphoribosyl transferase domain protein	Rtc	RNA Metabolism	RNA processing and modification
Putative ribonucleoprotein related-protein TROVE Domain	Rtc	RNA Metabolism	RNA processing and modification
RtcB-like protein	Rtc	RNA Metabolism	RNA processing and modification
Exosome complex exonuclease RRP46 (EC 3.1.13.-)	Exosome	RNA Metabolism	RNA processing and modification
Aerotaxis sensor receptor protein	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis response - phosphatase CheZ	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Flagellar motor switch protein FliG	Bacterial_Chemotaxis	Motility and Chemotaxis	
Flagellar motor switch protein FliM	Bacterial_Chemotaxis	Motility and Chemotaxis	
Flagellar motor switch protein FliN	Bacterial_Chemotaxis	Motility and Chemotaxis	
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE	Bacterial_Chemotaxis	Motility and Chemotaxis	
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Positive regulator of CheA protein activity (CheW)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Signal transduction histidine kinase CheA (EC 2.7.3.-)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis protein CheC -- inhibitor of MCP methylation	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis protein CheD	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis protein CheV (EC 2.7.3.-)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Chemotaxis protein CheX	Bacterial_Chemotaxis	Motility and Chemotaxis	
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Bacterial_Chemotaxis	Motility and Chemotaxis	
Transmembrane regulator protein PrtR	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
RNA polymerase sigma-54 factor RpoN	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
macromolecule metabolism	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
RNA polymerase sigma-70 factor, ECF subfamily	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
ECF sigma factor PrtI, putative	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
ECF family sigma factor	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
RNA polymerase sigma-70 factor	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
RNA polymerase sigma-E factor	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
ECF sigma factor	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
putative RNA polymerase sigma factor	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
RNA polymerase sigma-70 factor, ECF family	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
probable extracytoplasmic sigma factor EcfR	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
rna synthesis, modification , dna transcription	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
macromolecule synthesis, modification	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
extracytoplasmic sigma factor EcfR	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
Sigma-70 region 2:Sigma-70 region 4	CBSS-316057.3.peg.1308	Clustering-based subsystems	Putative asociate of RNA polymerase sigma-54 factor rpoN
Phage terminase, ATPase subunit	CBSS-Phage_terminase_neighborhood		
Phage terminase, endonuclease subunit	CBSS-Phage_terminase_neighborhood		
Phage head completion-stabilization protein	CBSS-Phage_terminase_neighborhood		
Phage tail completion protein	CBSS-Phage_terminase_neighborhood		
Phage-related capsid packaging protein	CBSS-Phage_terminase_neighborhood		
Phage capsid scaffolding protein	CBSS-Phage_terminase_neighborhood		
Phage major capsid protein	CBSS-Phage_terminase_neighborhood		
Portal vertex protein	CBSS-Phage_terminase_neighborhood		
Tail component protein	CBSS-Phage_terminase_neighborhood		
Phage tail protein	CBSS-Phage_terminase_neighborhood		
Phage lysin	CBSS-Phage_terminase_neighborhood		
phage head completion protein (GPL)	CBSS-Phage_terminase_neighborhood		
tail tube	CBSS-Phage_terminase_neighborhood		
Phage tail fibers	CBSS-Phage_terminase_neighborhood		
Prophage lysozyme (EC 3.2.1.17)	CBSS-Phage_terminase_neighborhood		
Phage tail assembly	CBSS-Phage_terminase_neighborhood		
Phage terminase	CBSS-Phage_terminase_neighborhood		
Phage capsid and scaffold	CBSS-Phage_terminase_neighborhood		
Phage DNA packaging	CBSS-Phage_terminase_neighborhood		
Phage portal	CBSS-Phage_terminase_neighborhood		
Small terminase subunit	CBSS-Phage_terminase_neighborhood		
Bacteriophage capsid portal protein	CBSS-Phage_terminase_neighborhood		
Formyltetrahydrofolate hydrolase	CBSS-Phage_terminase_neighborhood		
Putative phage-related tail protein precursor	CBSS-Phage_terminase_neighborhood		
Putative WPhiphage-related tail protein	CBSS-Phage_terminase_neighborhood		
Phage portal protein, PBSX	CBSS-Phage_terminase_neighborhood		
Fructoselysine kinase (EC 2.7.1.-)	Fructoselysine_(Amadori_product)_utilization_pathway	Carbohydrates	Aminosugars
Fructoselysine 6-phosphate deglycase (EC 3.5.-.-)	Fructoselysine_(Amadori_product)_utilization_pathway	Carbohydrates	Aminosugars
Fructoselysine 3-epimerase	Fructoselysine_(Amadori_product)_utilization_pathway	Carbohydrates	Aminosugars
Transcriptional regulator of fructoselysine utilization operon FrlR	Fructoselysine_(Amadori_product)_utilization_pathway	Carbohydrates	Aminosugars
Fructoselysine transporter FrlA, cationic amino acid permease	Fructoselysine_(Amadori_product)_utilization_pathway	Carbohydrates	Aminosugars
Na+/H+ antiporter NhaA type	NhaA	Experimental Subsystems	
Transcriptional activator NhaR	NhaA	Experimental Subsystems	
Sodium-dependent phosphate transporter	NhaA	Experimental Subsystems	
Transcriptional activator HlyU	NhaA	Experimental Subsystems	
Bacitracin export permease protein BceB	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacitracin export ATP-binding protein BceA	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Two-component sensor histidine kinase BceS	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Two-component response regulator BceR	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Two-component response regulator YvcP	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Response regulator LiaR	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Sensor histidine kinase LiaS	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Transporter LiaF	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Conserved protein LiaG in B. subtilis in Lia cluster	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Protein LiaH, similar to phage shock protein A	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Protein LiaI	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Two-component sensor kinase YvcQ	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
ABC transporter ATP-binding protein YvcR	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
ABC transporter permease protein YvcS	Bacitracin_Stress_Response	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
tRNA nucleotidyltransferase, A-adding (EC 2.7.7.25)	A_cluster_relating_to_Tryptophanyl-tRNA_synthetase	Clustering-based subsystems	
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	A_cluster_relating_to_Tryptophanyl-tRNA_synthetase	Clustering-based subsystems	
FIG004556: membrane metalloprotease	A_cluster_relating_to_Tryptophanyl-tRNA_synthetase	Clustering-based subsystems	
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	A_cluster_relating_to_Tryptophanyl-tRNA_synthetase	Clustering-based subsystems	
Putative SAM-dependent methyltransferase Bucepa02006346	A_cluster_relating_to_Tryptophanyl-tRNA_synthetase	Clustering-based subsystems	
Multiple virulence factor regulator MvfR/PqsR	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-acyl-L-homoserine lactone synthetase RhlL	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
Transcriptional regulator RhlR	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
Transcriptional regulator LasR	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-acyl-L-homoserine lactone synthetase LasI	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
Regulatory protein RsaL	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
PqsE, quinolone signal response protein	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
QscR quorum-sensing control repressor	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
BarA-associated response regulator UvrY (= GacA = SirA)	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
Vfr transcriptional regulator	Quorum_sensing_regulation_in_Pseudomonas	Regulation and Cell signaling	Quorum sensing and biofilm formation
Monoglyceride lipase (EC 3.1.1.23)	Cannabinoid_biosynthesis	Secondary Metabolism	Lipid-derived mediators
Cannabinoid receptor 1	Cannabinoid_biosynthesis	Secondary Metabolism	Lipid-derived mediators
Fatty-acid amide hydrolase (EC 3.1.-.-)	Cannabinoid_biosynthesis	Secondary Metabolism	Lipid-derived mediators
Cannabinoid receptor 2	Cannabinoid_biosynthesis	Secondary Metabolism	Lipid-derived mediators
Gamma-glutamyltranspeptidase (EC 2.3.2.2)	Utilization_of_glutathione_as_a_sulphur_source	Sulfur Metabolism	Organic sulfur assimilation
Putative glutathione transporter, permease component	Utilization_of_glutathione_as_a_sulphur_source	Sulfur Metabolism	Organic sulfur assimilation
Putative glutathione transporter, ATP-binding component	Utilization_of_glutathione_as_a_sulphur_source	Sulfur Metabolism	Organic sulfur assimilation
Putative glutathione transporter,solute-binding component	Utilization_of_glutathione_as_a_sulphur_source	Sulfur Metabolism	Organic sulfur assimilation
Putative gluthatione transporter,solute-binding component	Utilization_of_glutathione_as_a_sulphur_source	Sulfur Metabolism	Organic sulfur assimilation
Capsular polysaccharide synthesis enzyme Cap5A	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5B	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5C	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5D	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5E	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5F	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5G	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5H	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5I	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5J	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5K	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5L	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5M	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap5O	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8N	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8P	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8A	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8B	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8C	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8D	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8E	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8F	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8G	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8H	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8I	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8J	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8L	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8M	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme Cap8O	Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Nucleoside-diphosphate-sugar epimerases	NDP-sugar_epimerase	Experimental Subsystems	
CDP-6-deoxy-delta-3,4-glucoseen reductase-like	NDP-sugar_epimerase	Experimental Subsystems	
FIG002781: Alpha-L-glutamate ligase family protein	CBSS-208964.1.peg.1768	Clustering-based subsystems	a cluster of hypotheticals
FIG008443: hypothetical protein	CBSS-208964.1.peg.1768	Clustering-based subsystems	a cluster of hypotheticals
FIG139976: hypothetical protein	CBSS-208964.1.peg.1768	Clustering-based subsystems	a cluster of hypotheticals
Streptothricin acetyltransferase, Streptomyces lavendulae type	Streptothricin_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Antibiotic biosynthesis monooxygenase	CBSS-1085.1.peg.1363	Clustering-based subsystems	Drug resistance or antibiotic biosynthesis related cluster
Transcriptional regulator, ArsR family	CBSS-1085.1.peg.1363	Clustering-based subsystems	Drug resistance or antibiotic biosynthesis related cluster
(AF179595) Vco33	CBSS-1085.1.peg.1363	Clustering-based subsystems	Drug resistance or antibiotic biosynthesis related cluster
Probable drug resistance transport protein	CBSS-1085.1.peg.1363	Clustering-based subsystems	Drug resistance or antibiotic biosynthesis related cluster
putative cytochrome p450 oxidoreductase	CBSS-1085.1.peg.1363	Clustering-based subsystems	Drug resistance or antibiotic biosynthesis related cluster
Membrane fusion protein of RND family multidrug efflux pump	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug resistance efflux pump PmrA	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug-efflux transporter, major facilitator superfamily (MFS) (TC 2.A.1)	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Macrolide-specific efflux protein MacA	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug efflux RND membrane fusion protein MexC	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug efflux RND transporter MexD	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RND efflux system, inner membrane transporter CmeB	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RND efflux system, membrane fusion protein CmeA	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RND efflux system, outer membrane lipoprotein, NodT family	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcriptional regulator NfxB	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Type I secretion outer membrane protein, TolC precursor	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Acriflavin resistance protein	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Probable outer membrane component of multidrug efflux pump	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RND efflux system, outer membrane lipoprotein CmeC	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug efflux pump component MtrF	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Probable transcription regulator protein of MDR efflux pump cluster	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family	Multidrug_Resistance_Efflux_Pumps	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
T7-like phage endonuclease (EC 3.1.21.2)	T7-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T7-like phage exonuclease (EC 3.1.11.3)	T7-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T7-like phage primase/helicase protein	T7-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T7-like phage DNA-directed RNA polymerase (EC 2.7.7.6)	T7-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T7-like phage head-to-tail joining protein	T7-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T7-like phage DNA Polymerase (EC 2.7.7.7)	T7-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T7-like phage ssDNA-binding protein	T7-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)	CBSS-228410.1.peg.134	Clustering-based subsystems	
Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	CBSS-228410.1.peg.134	Clustering-based subsystems	
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-)	CBSS-228410.1.peg.134	Clustering-based subsystems	
Ribonuclease HI (EC 3.1.26.4)	CBSS-228410.1.peg.134	Clustering-based subsystems	
DNA polymerase III epsilon subunit (EC 2.7.7.7)	CBSS-228410.1.peg.134	Clustering-based subsystems	
Tellurite resistance protein TehB	Tellurite_resistance:_Chromosomal_determinants	Stress Response	Detoxification
Tellurite resistance protein TrgA	Tellurite_resistance:_Chromosomal_determinants	Stress Response	Detoxification
FIG005189: putative transferase clustered with tellurite resistance proteins TehA/TehB	Tellurite_resistance:_Chromosomal_determinants	Stress Response	Detoxification
Tellurite resistance protein TehA	Tellurite_resistance:_Chromosomal_determinants	Stress Response	Detoxification
Uncharacterized membrane lipoprotein clustered with tellurite resistance proteins TehA/TehB	Tellurite_resistance:_Chromosomal_determinants	Stress Response	Detoxification
DNA gyrase subunit A (EC 5.99.1.3)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
DNA gyrase subunit B (EC 5.99.1.3)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
Topoisomerase IV subunit A (EC 5.99.1.-)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
Topoisomerase IV subunit B (EC 5.99.1.-)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
DNA reverse gyrase (EC 5.99.1.-)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
DNA topoisomerase VI subunit A (EC 5.99.1.3)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
DNA topoisomerase VI subunit B (EC 5.99.1.3)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
DNA topoisomerase II (EC 5.99.1.3)	DNA_topoisomerases,_Type_II,_ATP-dependent	DNA Metabolism	DNA replication
Cyanate hydratase (EC 4.2.1.104)	Cyanate_hydrolysis	Nitrogen Metabolism	
Carbonic anhydrase (EC 4.2.1.1)	Cyanate_hydrolysis	Nitrogen Metabolism	
Cyanate ABC transporter, ATP-binding protein	Cyanate_hydrolysis	Nitrogen Metabolism	
Cyanate ABC transporter, permease protein	Cyanate_hydrolysis	Nitrogen Metabolism	
Cyanate ABC transporter, substrate binding protein	Cyanate_hydrolysis	Nitrogen Metabolism	
Cyn operon transcriptional activator	Cyanate_hydrolysis	Nitrogen Metabolism	
Cyanate transport protein CynX	Cyanate_hydrolysis	Nitrogen Metabolism	
Transcriptional activator similar to cyn operon regulator	Cyanate_hydrolysis	Nitrogen Metabolism	
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	CR_clusters_Euk_1	Experimental Subsystems	
Transketolase (EC 2.2.1.1)	CR_clusters_Euk_1	Experimental Subsystems	
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	CR_clusters_Euk_1	Experimental Subsystems	
Sodium- and chloride-dependent glycine transporter 1	CR_clusters_Euk_1	Experimental Subsystems	
Munc13-2 protein	CR_clusters_Euk_1	Experimental Subsystems	
Long-chain fatty acid transport protein 1 (EC 6.2.1.-)	CR_clusters_Euk_1	Experimental Subsystems	
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor (EC 1.14.11.4)	CR_clusters_Euk_1	Experimental Subsystems	
Eukaryotic translation initiation factor 2-alpha kinase 3 (PERK)	CR_clusters_Euk_1	Experimental Subsystems	
Eukaryotic translation initiation factor 2-alpha kinase 1 (HRI)	CR_clusters_Euk_1	Experimental Subsystems	
CLL-associated antigen KW-1 splice variant 1	CR_clusters_Euk_1	Experimental Subsystems	
Centromere protein S	CR_clusters_Euk_1	Experimental Subsystems	
Caspase-activated deoxyribonuclease inhibitor short form	CR_clusters_Euk_1	Experimental Subsystems	
6-phosphogluconolactonase (EC 3.1.1.31)	CR_clusters_Euk_1	Experimental Subsystems	
Forkhead box protein I1	CR_clusters_Euk_1	Experimental Subsystems	
Peroxisomal biogenesis factor 14	CR_clusters_Euk_1	Experimental Subsystems	
Beta-catenin-interacting protein 1	CR_clusters_Euk_1	Experimental Subsystems	
casein kinase II beta chain	CR_clusters_Euk_1	Experimental Subsystems	
serologically defined breast cancer antigen 84	CR_clusters_Euk_1	Experimental Subsystems	
mitosis inhibitor protein kinase mik1	CR_clusters_Euk_1	Experimental Subsystems	
Phage major capsid protein	r1t-like_streptococcal_phages		
FIG018632: Phage-associated protein	r1t-like_streptococcal_phages		
Phage major tail protein	r1t-like_streptococcal_phages		
Phage terminase	r1t-like_streptococcal_phages		
FIG017897: Phage protein	r1t-like_streptococcal_phages		
Phage portal protein	r1t-like_streptococcal_phages		
Phage capsid and scaffold	r1t-like_streptococcal_phages		
FIG018217: Phage-associated protein	r1t-like_streptococcal_phages		
FIG020717: Phage-associated protein	r1t-like_streptococcal_phages		
Phage protein	r1t-like_streptococcal_phages		
Phage resolvase	r1t-like_streptococcal_phages		
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	r1t-like_streptococcal_phages		
Phage minor tail protein	r1t-like_streptococcal_phages		
site-specific recombinase, phage integrase family	r1t-like_streptococcal_phages		
structural protein	r1t-like_streptococcal_phages		
platelet binding protein	r1t-like_streptococcal_phages		
FIG018599: Phage-associated protein	r1t-like_streptococcal_phages		
FIG021300: Phage-associated protein	r1t-like_streptococcal_phages		
Phage endopeptidase	r1t-like_streptococcal_phages		
FIG021930: Phage-associated protein	r1t-like_streptococcal_phages		
FIG022125: Phage-associated protein	r1t-like_streptococcal_phages		
Phage hyaluronidase	r1t-like_streptococcal_phages		
FIG040428: Phage-associated protein	r1t-like_streptococcal_phages		
Hyaluronate lyase (phage associated)	r1t-like_streptococcal_phages		
Recombinational DNA repair protein RecT (prophage associated)	r1t-like_streptococcal_phages		
Helicase loader DnaI	r1t-like_streptococcal_phages		
conserved hypothetical protein - phage associated	r1t-like_streptococcal_phages		
phage protein homolog lin2602	r1t-like_streptococcal_phages		
Conserved hypotehetical protein-phage associated	r1t-like_streptococcal_phages		
FIG033577: Phage protein	r1t-like_streptococcal_phages		
putative methylase	r1t-like_streptococcal_phages		
HNH homing endonuclease	r1t-like_streptococcal_phages		
FIG035554: Phage-associated protein	r1t-like_streptococcal_phages		
FIG048485: Phage protein	r1t-like_streptococcal_phages		
FIG042840: Phage protein	r1t-like_streptococcal_phages		
putative minor structural protein	r1t-like_streptococcal_phages		
Phage Lysin, N-acetylmuramoyl-L-alanine amidase, family 4	r1t-like_streptococcal_phages		
prophage LambdaSa1, minor structural protein, putative	r1t-like_streptococcal_phages		
DNA replication protein DnaC	r1t-like_streptococcal_phages		
ATP-dependent nuclease, subunit A	ATP-dependent_Nuclease	DNA Metabolism	DNA repair
ATP-dependent nuclease, subunit B	ATP-dependent_Nuclease	DNA Metabolism	DNA repair
Conserved protein YqhG	CBSS-288681.3.peg.1039	Clustering-based subsystems	
Superfamily II DNA/RNA helicases, SNF2 family	CBSS-288681.3.peg.1039	Clustering-based subsystems	
Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)	Protein_degradation	Protein Metabolism	Protein degradation
Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5)	Protein_degradation	Protein Metabolism	Protein degradation
Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)	Protein_degradation	Protein Metabolism	Protein degradation
Aminopeptidase C (EC 3.4.22.40)	Protein_degradation	Protein Metabolism	Protein degradation
Asp-X dipeptidase	Protein_degradation	Protein Metabolism	Protein degradation
Oligopeptidase A (EC 3.4.24.70)	Protein_degradation	Protein Metabolism	Protein degradation
Deblocking aminopeptidase (EC 3.4.11.-)	Protein_degradation	Protein Metabolism	Protein degradation
Isoaspartyl dipeptidase (EC 3.4.19.5)	Protein_degradation	Protein Metabolism	Protein degradation
Nondeblocking aminopeptidase YpdE (X-X-[^PR]- specific)	Protein_degradation	Protein Metabolism	Protein degradation
Arginine-tRNA-protein transferase (EC 2.3.2.8)	Protein_degradation	Protein Metabolism	Protein degradation
Thimet oligopeptidase (EC 3.4.24.15)	Protein_degradation	Protein Metabolism	Protein degradation
DNA polymerase (EC 2.7.7.7), phage-associated	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
DNA primase (EC 2.7.7.-)	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage DNA polymerase clamp loader subunit	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage endoribonulcease translational repressor of early genes, regA	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage head completion protein	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage major capsid protein	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage neck protein	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage portal vertex of the head	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage prohead core scaffold protein and protease	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage recombination-related endonuclease Gp46	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage recombination-related endonuclease Gp47	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage scaffold prohead core protein	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail completion and sheath stabilization protein	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail sheath monomer	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail tube monomer	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, small subunit	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Proximal tail sheath stabilization protein	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Single stranded DNA-binding protein, phage-associated	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Sliding clamp DNA polymerase accessory protein, phage associated	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage DexA exonuclease A	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage RNA polymerase sigma factor for late transcription	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage baseplate hub + tail lysozyme	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage DNA polymerase clamp loader subunit Gp62	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage baseplate wedge component Gp8	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage glutaredoxin, NrdC	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Thymidylate synthase thyX (EC 2.1.1.-)	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate tail tube cap	T4-like_phages_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cell division protein FtsA	cell_division_core_of_larger_cluster	Clustering-based subsystems	Cell Division
Cell division protein FtsZ (EC 3.4.24.-)	cell_division_core_of_larger_cluster	Clustering-based subsystems	Cell Division
Cell division protein FtsQ	cell_division_core_of_larger_cluster	Clustering-based subsystems	Cell Division
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	cell_division_core_of_larger_cluster	Clustering-based subsystems	Cell Division
FIG018298: PE family protein	Mycobacterium_virulence_operon_with_PE_family_and_Esat6-like_proteins	Virulence	
FIG013075: PPE family protein	Mycobacterium_virulence_operon_with_PE_family_and_Esat6-like_proteins	Virulence	
ESAT-6-like protein EsxK	Mycobacterium_virulence_operon_with_PE_family_and_Esat6-like_proteins	Virulence	
ESAT-6-like protein EsxL	Mycobacterium_virulence_operon_with_PE_family_and_Esat6-like_proteins	Virulence	
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)	CBSS-269801.1.peg.1715	Clustering-based subsystems	
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	CBSS-269801.1.peg.1715	Clustering-based subsystems	
FIGfam003972: membrane protein	CBSS-269801.1.peg.1715	Clustering-based subsystems	
Serine protease (EC 3.4.21.-)	CBSS-269801.1.peg.1715	Clustering-based subsystems	
Lon-like protease with PDZ domain	CBSS-269801.1.peg.1715	Clustering-based subsystems	
FIG007079: UPF0348 protein family	CBSS-269801.1.peg.1715	Clustering-based subsystems	
ABC-type multidrug transport system, ATPase component	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
ABC-type multidrug transport system, permease component	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
FIG020413: transmembrane protein	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
Iron-sulfur cluster assembly ATPase protein SufC	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
Iron-sulfur cluster assembly protein SufB	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
Iron-sulfur cluster assembly protein SufD	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
Iron-sulfur cluster regulator SufR	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
Probable NADPH:quinone reductase (EC 1.6.5.5)	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
cytochrome oxidase assembly protein	CBSS-196164.1.peg.1690	Clustering-based subsystems	Cytochrome biogenesis
Ribosyl nicotinamide transporter, PnuC-like	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosylnicotinamide kinase (EC 2.7.1.22)	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22)	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Thiamin pyrophosphokinase (EC 2.7.6.2)	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Deoxyguanosine kinase (EC 2.7.1.113)	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Predicted N-ribosylNicotinamide CRP-like regulator	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Predicted thiamin transporter PnuT	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
PnuC-like transporter linked to homoserine kinase and OMR	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Putative homoserine kinase type II, PnuC-associated, THI-regulated branch	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Riboflavin transporter PnuX	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
PnuC-like transporter of unknown specificity	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NrdR-regulated deoxyribonucleotide transporter, PnuC-like	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
PnuC-like transporter linked to Choline/ethanolamine kinase and OMR	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Putative choline kinase, PnuC-associated, THI-regulated	PnuC-like_transporters	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Glutathione reductase (EC 1.8.1.7)	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutathione peroxidase (EC 1.11.1.9)	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin 1	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin 2	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin 3 (Grx3)	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutathione peroxidase family protein	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin 3	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin-related protein	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Uncharacterized monothiol glutaredoxin ycf64-like	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin 3 (Grx2)	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Glutaredoxin 3 (Grx1)	Glutathione:_Redox_cycle	Stress Response	Oxidative stress
Aerobic respiration control sensor protein arcB (EC 2.7.3.-)	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
diphtheria toxin repressor	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Peroxidase (EC 1.11.1.7)	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Superoxide dismutase [Fe] (EC 1.15.1.1)	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
RNA polymerase sigma factor	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Redox-sensitive transcriptional activator SoxR	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Peroxide stress regulator	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Superoxide dismutase [Mn] (EC 1.15.1.1)	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Aerobic respiration control protein arcA	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
DNA protection during starvation protein	Regulation_of_Oxidative_Stress_Response	Stress Response	Oxidative stress
Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
Isochorismate synthase (EC 5.4.4.2)	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
Isochorismatase (EC 3.3.2.1)	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28)	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
4'-phosphopantetheinyl transferase entD (EC 2.7.8.-)	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
Amide synthase component of siderophore synthetase	Siderophores_of_catechol_family_-_scratch	Experimental Subsystems	
Alpha-2-macroglobulin	CBSS-316273.3.peg.227	Clustering-based subsystems	
Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C	CBSS-316273.3.peg.227	Clustering-based subsystems	
Protein SseB	CBSS-316273.3.peg.227	Clustering-based subsystems	
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	CBSS-316273.3.peg.227	Clustering-based subsystems	
FIG002343: hypothetical protein	CBSS-1140.3.peg.2017	Clustering-based subsystems	2 proteases and a MoxR
FIG022979: MoxR-like ATPases	CBSS-1140.3.peg.2017	Clustering-based subsystems	2 proteases and a MoxR
FIG001454: Transglutaminase-like enzymes, putative cysteine proteases	CBSS-1140.3.peg.2017	Clustering-based subsystems	2 proteases and a MoxR
FIG002343: hypothetical protein-2	CBSS-1140.3.peg.2017	Clustering-based subsystems	2 proteases and a MoxR
LSU ribosomal protein L1p (L10Ae), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L2p (L8e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L3p (L3e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L4p (L1e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L5p (L11e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L6p (L9e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L7/L12 (L23e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L9p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L10p (P0), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L11p (L12e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L13p (L13Ae), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L14p (L23e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L15p (L27Ae), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L16p (L10e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L17p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L18p (L5e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L20p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L22p (L17e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L23p (L23Ae), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L24p (L26e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L27p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L33p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L34p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L35p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L19p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L21p, chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L29p (L35e), chloroplast	Ribosome_LSU_chloroplast	Protein Metabolism	Protein biosynthesis
Xanthan biosynthesis glycosyltransferase GumD	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis glycosyltransferase GumM	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis glycosyltransferase GumH	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis glucuronosyltransferase GumK	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis glycosyltransferase GumI	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis pyruvyltransferase GumL	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis acetyltransferase GumF	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Outer membrane protein GumB, involved in the export of xanthan	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis exopolysaccharide polymerase GumE	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis chain length determinant protein GumC	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis acetyltransferase GumG	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Xanthan biosynthesis oligosaccharidyl-lipid flippase GumJ	Xanthan_Exopolysaccharide_Biosynthesis_and_Export	Cell Wall and Capsule	Capsular and extracellular polysacchrides
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Gene SCO4494, often clustered with other genes in menaquinone via futalosine pathway	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 1	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 2	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 3	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 4	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
5'-methylthioadenosine phosphorylase (EC 2.4.2.28)	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 4, possible alternative	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Adenosine deaminase (EC 3.5.4.4)	Menaquinone_Biosynthesis_via_Futalosine	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Capsular polysaccharide export system protein KpsF	Group_2_capsule_operon_in_E_coli	Experimental Subsystems	
Capsular polysaccharide export system inner membrane protein KpsE	Group_2_capsule_operon_in_E_coli	Experimental Subsystems	
Capsular polysaccharide export system periplasmic protein KpsD	Group_2_capsule_operon_in_E_coli	Experimental Subsystems	
CMP-Kdo synthetase, KpsU	Group_2_capsule_operon_in_E_coli	Experimental Subsystems	
Capsular polysaccharide export system protein KpsC	Group_2_capsule_operon_in_E_coli	Experimental Subsystems	
Capsular polysaccharide export system protein KpsS	Group_2_capsule_operon_in_E_coli	Experimental Subsystems	
NusA protein homolog, archaeal	Transcription_elongation_factors,_archaeal	RNA Metabolism	Transcription
NusA protein homolog 2, archaeal	Transcription_elongation_factors,_archaeal	RNA Metabolism	Transcription
Putative transcription antitermination protein NusG	Transcription_elongation_factors,_archaeal	RNA Metabolism	Transcription
Transcription factor S	Transcription_elongation_factors,_archaeal	RNA Metabolism	Transcription
Transcription factor S-related protein 2	Transcription_elongation_factors,_archaeal	RNA Metabolism	Transcription
Transcription factor S-related protein 1	Transcription_elongation_factors,_archaeal	RNA Metabolism	Transcription
Transcription factor S-related protein 3	Transcription_elongation_factors,_archaeal	RNA Metabolism	Transcription
BarA sensory histidine kinase (= VarS = GacS)	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
BarA-associated response regulator UvrY (= GacA = SirA)	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
Type III secretion transcriptional activator HilA	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
SPI1-associated transcriptional regulator SprB	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
Type III secretion transcriptional regulator HilC (= SirC)	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
Type III secretion transcriptional regulator HilD	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
Type III secretion and flagellar regulator RtsA	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
Flagellar regulon repressor RtsB	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
OrgB protein, associated with InvC ATPase of type III secretion system	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
Putative effector protein OrgC of SPI-1 type III secretion system	Type_III_secretion_system_orphans	Membrane Transport	Protein secretion system, Type III
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Butanol_Biosynthesis	Carbohydrates	Fermentation
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Butanol_Biosynthesis	Carbohydrates	Fermentation
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Butanol_Biosynthesis	Carbohydrates	Fermentation
Enoyl-CoA hydratase (EC 4.2.1.17)	Butanol_Biosynthesis	Carbohydrates	Fermentation
NADH-dependent butanol dehydrogenase A (EC 1.1.1.-)	Butanol_Biosynthesis	Carbohydrates	Fermentation
NADH-dependent butanol dehydrogenase B (EC 1.1.1.-)	Butanol_Biosynthesis	Carbohydrates	Fermentation
Pyruvate formate-lyase (EC 2.3.1.54)	Butanol_Biosynthesis	Carbohydrates	Fermentation
NADPH-dependent butanol dehydrogenase (EC 1.1.1.-)	Butanol_Biosynthesis	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10)	Butanol_Biosynthesis	Carbohydrates	Fermentation
FIG005080: Possible exported protein	Nit-MVDC	Experimental Subsystems	
Omega amidase (Nit2 homolog)	Nit-MVDC	Experimental Subsystems	
FIG003879: Predicted amidohydrolase; Nit	Nit-MVDC	Experimental Subsystems	
TldD protein, part of TldE/TldD proteolytic complex	Nit-MVDC	Experimental Subsystems	
ABC-type hemin transport system, ATPase component	Hemin_transport_system	Iron acquisition and metabolism	
Ferric siderophore transport system, biopolymer transport protein ExbB	Hemin_transport_system	Iron acquisition and metabolism	
Ferric siderophore transport system, periplasmic binding protein TonB	Hemin_transport_system	Iron acquisition and metabolism	
Flavin reductase (EC 1.5.1.30)	Hemin_transport_system	Iron acquisition and metabolism	
Hemin ABC transporter, permease protein	Hemin_transport_system	Iron acquisition and metabolism	
Hemin transport protein HmuS	Hemin_transport_system	Iron acquisition and metabolism	
Paraquat-inducible protein A	Hemin_transport_system	Iron acquisition and metabolism	
Paraquat-inducible protein B	Hemin_transport_system	Iron acquisition and metabolism	
Periplasmic hemin-binding protein	Hemin_transport_system	Iron acquisition and metabolism	
Putative heme iron utilization protein	Hemin_transport_system	Iron acquisition and metabolism	
Electron transfer flavoprotein, beta subunit	Hemin_transport_system	Iron acquisition and metabolism	
Outer membrane receptor proteins, mostly Fe transport	Hemin_transport_system	Iron acquisition and metabolism	
Biopolymer transport protein ExbD1	Hemin_transport_system	Iron acquisition and metabolism	
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)	Hemin_transport_system	Iron acquisition and metabolism	
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein	Hemin_transport_system	Iron acquisition and metabolism	
TonB-dependent hemin , ferrichrome receptor	Hemin_transport_system	Iron acquisition and metabolism	
Transcriptional regulator LuxT	Hemin_transport_system	Iron acquisition and metabolism	
Heme oxygenase HemO, associated with heme uptake	Hemin_transport_system	Iron acquisition and metabolism	
Hemin uptake protein HemP	Hemin_transport_system	Iron acquisition and metabolism	
Hemin transport protein	Hemin_transport_system	Iron acquisition and metabolism	
Hemin uptake protein	Hemin_transport_system	Iron acquisition and metabolism	
ABC-type Fe3+-siderophore transport system permease component	Hemin_transport_system	Iron acquisition and metabolism	
Outer membrane hemoglobin-haptoglobin utilization protein HpuB	Hemin_transport_system	Iron acquisition and metabolism	
heme uptake regulator	Hemin_transport_system	Iron acquisition and metabolism	
heme uptake transmembrane sensor	Hemin_transport_system	Iron acquisition and metabolism	
Iron compound ABC uptake transporter ATP-binding protein	Hemin_transport_system	Iron acquisition and metabolism	
Hemin receptor protein HemR	Hemin_transport_system	Iron acquisition and metabolism	
Hemin-binding lipoprotein HbpA	Hemin_transport_system	Iron acquisition and metabolism	
Haemin uptake system ATP-binding protein	Hemin_transport_system	Iron acquisition and metabolism	
Haemin uptake system outer membrane receptor	Hemin_transport_system	Iron acquisition and metabolism	
Haemin uptake system periplasmic haemin-binding protein	Hemin_transport_system	Iron acquisition and metabolism	
Haemin uptake system permease protein	Hemin_transport_system	Iron acquisition and metabolism	
Outer membrane hemoglobin utilization protein HmbR	Hemin_transport_system	Iron acquisition and metabolism	
Similar to coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Hemin_transport_system	Iron acquisition and metabolism	
ATP/GTP-binding site motif A	CBSS-176299.4.peg.1996A	Clustering-based subsystems	
Endoribonuclease L-PSP	CBSS-176299.4.peg.1996A	Clustering-based subsystems	
FIG110192: hypothetical protein	CBSS-176299.4.peg.1996A	Clustering-based subsystems	
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	CBSS-176299.4.peg.1996A	Clustering-based subsystems	
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	CBSS-176299.4.peg.1996A	Clustering-based subsystems	
putative esterase	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
bll7545	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
InterPro IPR001440 COGs COG0457	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
Pyruvate kinase (EC 2.7.1.40)	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
protein of unknown function DUF1244	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
protein of unknown function DUF1036	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
UPF0335 protein R02793	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
protein of unknown function DUF882	CBSS-288000.5.peg.1793	Clustering-based subsystems	Pyruvate kinase associated cluster
Glucans biosynthesis protein C (EC 2.1.-.-)	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
Glucans biosynthesis protein G precursor	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
Phosphoglycerol transferase I (EC 2.7.8.20)	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
Glucans biosynthesis protein D precursor	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA (EC 3.6.3.42)	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
OpgC protein	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
Cyclic beta-1,2-glucan modification transmembrane protein	Synthesis_of_osmoregulated_periplasmic_glucans	Stress Response	Osmotic stress
2-cys peroxiredoxin BAS1, chloroplast precursor	Phytosterol_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Oxidosqualene cyclase protein	Phytosterol_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Beta-amyrin synthase	Phytosterol_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Pentacyclic triterpene synthase	Phytosterol_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Mitogenic factor 4	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptococcal pyrogenic exotoxin A (SpeA)	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptococcal pyrogenic exotoxin K (SpeK)	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptodornase D	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Mitogenic factor 2	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Mitogenic factor 3	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptococcal pyrogenic exotoxin C (SpeC)	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptococcal pyrogenic exotoxin L (SpeL)	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptococcal pyrogenic exotoxin M (SpeM)	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptococcal pyrogenic exotoxin I (SpeI)	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Streptococcal pyrogenic exotoxin H (SpeH)	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Staphylococcal enterotoxin L	Prophage-encoded_Exotoxins	Virulence, Disease and Defense	Toxins and superantigens
Lysine-epsilon oxidase (EC 1.4.3.20) antimicrobial protein LodA	Marinocine,_a_broad-spectrum_antibacterial_protein	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Dehydrogenase flavoprotein LodB	Marinocine,_a_broad-spectrum_antibacterial_protein	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Membrane-bound transcription factor site-1 protease S1P	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Membrane-bound transcription factor site 2 protease S2P	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Sterol regulatory element binding transcription factor 1	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Sterol regulatory element binding transcription factor 2	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Sterol regulatory element binding protein cleavage-activating protein	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Insig-1, sterol regulated ER retention factor for SREBP-SCAP complexes	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Insig-2, sterol regulated ER retention factor for SREBP-SCAP complexes	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Cyclic-AMP-dependent transcription factor ATF-6 alpha	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Cyclic-AMP-dependent transcription factor ATF-6 beta	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
cAMP responsive element binding protein 3 (luman)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
cAMP responsive element binding protein 3-like 1 (oasis)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
cAMP responsive element binding protein 3-like 4 (CREB4)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
cAMP responsive element binding protein 3-like 3 (CREB-H)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Endoplasmic reticulum chaperon grp78 (BiP)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Eukaryotic translation initiation factor 2-alpha kinase 3 (PERK)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Eukaryotic translation initiation factor 2-alpha kinase 4 (GCN2)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Eukaryotic translation initiation factor 2-alpha kinase 2 (PKR)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Eukaryotic translation initiation factor 2-alpha kinase 1 (HRI)	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Endoribonuclease (EC 3.1.26.-) IRE1	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Endoribonuclease (EC 3.1.26.-) IRE2	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Sterol regulatory element binding transcription factor	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
cAMP responsive element binding protein 3	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Sterol regulatory element binding transcription factor sre1	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Sterol regulatory element binding transcription factor sre2	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
Ins1, sterol regulated ER retention factor for SREBP-SCAP complexes	Regulatory_Intramembrane_Proteolysis_Pathways	Regulation and Cell signaling	Proteolytic pathway
tmRNA-binding protein SmpB	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Peptide chain release factor 1	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Peptide chain release factor 2	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Peptidyl-tRNA hydrolase (EC 3.1.1.29)	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Peptide deformylase (EC 3.5.1.88)	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Methionine aminopeptidase (EC 3.4.11.18)	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Ribosome recycling factor	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Peptide chain release factor 3	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Hypothetical protein YaeJ with similarity to translation release factor	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Peptide chain release factor homolog	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
Protein with similarity to RtcB	Translation_termination_factors_bacterial	Protein Metabolism	Protein biosynthesis
FIG021574: Possible membrane protein related to de Novo purine biosynthesis	A_hypothetical_coupled_to_de_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	A_hypothetical_coupled_to_de_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
IMP cyclohydrolase (EC 3.5.4.10)	A_hypothetical_coupled_to_de_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	A_hypothetical_coupled_to_de_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
5-deoxy-glucuronate isomerase (EC 5.3.1.-)	Inositol_catabolism	Carbohydrates	Sugar alcohols
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)	Inositol_catabolism	Carbohydrates	Sugar alcohols
5-keto-2-deoxygluconokinase (EC 2.7.1.92)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Epi-inositol hydrolase (EC 3.7.1.-)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Inositol transport system ATP-binding protein	Inositol_catabolism	Carbohydrates	Sugar alcohols
Inositol transport system permease protein	Inositol_catabolism	Carbohydrates	Sugar alcohols
Inositol transport system sugar-binding protein	Inositol_catabolism	Carbohydrates	Sugar alcohols
Inositol-1-monophosphatase (EC 3.1.3.25)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Inosose dehydratase (EC 4.2.1.44)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Inosose isomerase (EC 5.3.99.-)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Myo-inositol 2-dehydrogenase (EC 1.1.1.18)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Predicted transcriptional regulator of the myo-inositol catabolic operon	Inositol_catabolism	Carbohydrates	Sugar alcohols
Sodium/myo-inositol cotransporter	Inositol_catabolism	Carbohydrates	Sugar alcohols
Major myo-inositol transporter IolT	Inositol_catabolism	Carbohydrates	Sugar alcohols
Minor myo-inositol transporter IolF	Inositol_catabolism	Carbohydrates	Sugar alcohols
Transcriptional repressor of the myo-inositol catabolic operon DeoR family	Inositol_catabolism	Carbohydrates	Sugar alcohols
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase [form 2] (EC 4.1.2.29)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Inositol_catabolism	Carbohydrates	Sugar alcohols
uncharacterized domain	Inositol_catabolism	Carbohydrates	Sugar alcohols
Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18)	Inositol_catabolism	Carbohydrates	Sugar alcohols
Fe-containing alcohol dehydrogenase	Inositol_catabolism	Carbohydrates	Sugar alcohols
Inositol oxygenase (EC 1.13.99.1)	Inositol_catabolism	Carbohydrates	Sugar alcohols
YuzD-like protein	CBSS-101031.3.peg.1876	Clustering-based subsystems	
Nitrogen-fixing NifU domain protein	CBSS-101031.3.peg.1876	Clustering-based subsystems	
Cell wall surface anchor family protein	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
Sortase A, LPXTG specific	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
NPQTN specific sortase B	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
LPXTG specific sortase A	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
Cell wall surface anchor family protein, FPXTG motif	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
Cell wall surface anchor family protein, LPXTG motif	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
Sortase C, subfamily 3, QVPTGV specific	Sortase	Cell Wall and Capsule	Gram-Positive cell wall components
Extracellular Matrix protein PslA	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslB	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslD	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslE	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslF	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslG	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslH	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslI	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslJ	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslK	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslL	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PslC	Extracellular_matrix_proteins_(PSL)_involved_in_mannose-rich_biofilm_formation_in_Pseudomonas		
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase A (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase B (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase C (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70)	RNA_pseudouridine_syntheses	RNA Metabolism	RNA processing and modification
Cytochrome c553	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Ferredoxin	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Ferredoxin, 2Fe-2S	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Iron-sulfur cluster-binding protein	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Photosystem II protein PsbV, cytochrome c550	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
soluble [2Fe-2S] ferredoxin	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome c552 precursor (EC 1.7.2.2)	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Soluble cytochrome b562	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Membrane-attached cytochrome c550	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome C553 (soluble cytochrome f)	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome c4	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome c551/c552	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
FIG002261: Cytochrome c family protein	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
FIG135464: Cytochrome c4	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Probable cytochrome c2	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Putative diheme cytochrome c-553	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome c2	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome c552	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Probable ferredoxin	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Probable cytochrome c-552	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome c-552 precursor	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
Cytochrome C550 (Soluble cytochrome C)	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
cytochrome c-551	Soluble_cytochromes_and_functionally_related_electron_carriers	Respiration	
tRNA (cm5uracil34-C5-)-methyltranferase (EC 2.1.1.-)	mcm5s2U_biosynthesis_in_tRNA	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7)	mcm5s2U_biosynthesis_in_tRNA	RNA Metabolism	RNA processing and modification
histone acetyltransferase, ELP3 family	mcm5s2U_biosynthesis_in_tRNA	RNA Metabolism	RNA processing and modification
Urm1p Ubiquitin like protein involve in thiolation of mcm5Us4 in tRNA	mcm5s2U_biosynthesis_in_tRNA	RNA Metabolism	RNA processing and modification
Ncs2p involved in thiolation of mcm5Us4 in tRNA	mcm5s2U_biosynthesis_in_tRNA	RNA Metabolism	RNA processing and modification
Archease	Archease	Miscellaneous	
Deoxyhypusine synthase (EC 2.5.1.46)	Alkaloid_biosynthesis_from_L-lysine	Secondary Metabolism	Plant Alkaloids
Oxalyl-CoA decarboxylase (EC 4.1.1.8)	Alkaloid_biosynthesis_from_L-lysine	Secondary Metabolism	Plant Alkaloids
Enterochelin uptake ATP-binding protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Enterochelin uptake periplasmic binding protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Enterochelin uptake permease CeuB	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Enterochelin uptake permease CeuC	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferric iron ABC transporter, iron-binding protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferric iron ABC transporter, permease protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferric receptor CfrA	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferric siderophore transport system, biopolymer transport protein ExbB	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferric siderophore transport system, biopolymer transport protein ExbD	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferric siderophore transport system, periplasmic binding protein TonB	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferric uptake regulation protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferrous iron transport protein A, putative	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Ferrous iron transport protein B	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Haemin uptake system ATP-binding protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Haemin uptake system outer membrane receptor	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Haemin uptake system periplasmic haemin-binding protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Haemin uptake system permease protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Hemerythrin-like iron-binding protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Magnesium and cobalt transport protein CorA	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Nonheme iron-containing ferritin	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Periplasmic protein p19 involved in high-affinity Fe2+ transport	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Peroxide stress regulator	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Possible bacterioferritin	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Putative heme oxygenase	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Putative high-affinity iron permease	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Putative iron-uptake ABC transport system ATP-binding protein	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Putative lipoprotein of ferric iron transporter system	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Putative lipoprotein, similar to CjrA of Escherichia coli O164	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Putative outer membrane siderophore receptor	Campylobacter_Iron_Metabolism	Iron acquisition and metabolism	
Dihydroflavonol-4-reductase (EC 1.1.1.219)	Tannin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Leucoanthocyanidin dioxygenase (EC 1.14.11.19)	Tannin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Predicted secretion system X DNA-binding regulator	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X protein GspG-like	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X pseudopilin PulG-like	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X protein GspD-like	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X protein GspE-like	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X protein GspG-like 2	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X translation initiation factor	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X transmembrane protein 1	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X transmembrane protein 2	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X FIG084745: hypothetical protein	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X protein GspG-like 3	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
Predicted secretion system X protein GspF-like	Predicted_secretion_system_X	Membrane Transport	Protein secretion system, Type II
DedA protein	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
TsgA protein homolog	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
Various polyols ABC transporter, periplasmic substrate-binding protein	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
Various polyols ABC transporter, permease component 1	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
Various polyols ABC transporter, permease component 2	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
Various polyols ABC transporter, ATP-binding component	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
Outer membrane porin protein NmpC precursor	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
Inner membrane transport protein YbaT	Uptake_of_selenate_and_selenite	Stress Response	Detoxification
FIG032621: Hydrolase, alpha/beta hydrolase fold family	CBSS-211586.1.peg.69	Clustering-based subsystems	
ABC-type Na+ transport system, ATPase component	CBSS-211586.1.peg.69	Clustering-based subsystems	
ABC-type Na+ efflux pump, permease component	CBSS-211586.1.peg.69	Clustering-based subsystems	
Preprotein translocase subunit YajC (TC 3.A.5.1.1)	CBSS-783.1.peg.807	Clustering-based subsystems	
Protein-export membrane protein SecD (TC 3.A.5.1.1)	CBSS-783.1.peg.807	Clustering-based subsystems	
Protein-export membrane protein SecF (TC 3.A.5.1.1)	CBSS-783.1.peg.807	Clustering-based subsystems	
FIG020313: hypothetical protein	CBSS-783.1.peg.807	Clustering-based subsystems	
D-alanyl transfer protein DltB	D-Alanyl_Lipoteichoic_Acid_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Poly(glycerophosphate chain) D-alanine transfer protein DltD	D-Alanyl_Lipoteichoic_Acid_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	D-Alanyl_Lipoteichoic_Acid_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	D-Alanyl_Lipoteichoic_Acid_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Petrobactin ABC transporter, periplasmic binding protein	Petrobactin-mediated_iron_uptake_system	Iron acquisition and metabolism	Siderophores
Petrobactin ABC transporter, ATP-binding protein	Petrobactin-mediated_iron_uptake_system	Iron acquisition and metabolism	Siderophores
Petrobactin ABC transporter, permease protein I	Petrobactin-mediated_iron_uptake_system	Iron acquisition and metabolism	Siderophores
Petrobactin ABC transporter, permease protein II	Petrobactin-mediated_iron_uptake_system	Iron acquisition and metabolism	Siderophores
LSU ribosomal protein L1p (L10Ae), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L2p (L8e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L3p (L3e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L4p (L1e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L5p (L11e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L6p (L9e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L7/L12 (L23e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L9p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L11p (L12e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L14p (L23e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L15p (L27Ae), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L16p (L10e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L17p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L19p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L20p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L21p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L24p (L26e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L25p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L33p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L41mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L43mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L45mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L46mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L47mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L53mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L54mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L13p (L13Ae), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L27p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L10p (P0), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L22p (L17e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L34p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L40mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L44mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein MRPL20, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein MRPL25, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein MRPL31, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein MRPL35, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L30p (L7e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36p, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein MRPL13, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein MRPL15, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein MRP51, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L23p (L23Ae), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L49mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L37mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L38mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L39mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L42mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L48mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L50mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L51mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L52mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L55mt, mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L18p (L5e), mitochondrial	Ribosome_LSU_mitochondrial	Protein Metabolism	Protein biosynthesis
Lactam utilization protein LamB	CBSS-279010.5.peg.587	Clustering-based subsystems	
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	CBSS-279010.5.peg.587	Clustering-based subsystems	
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	CBSS-279010.5.peg.587	Clustering-based subsystems	
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	CBSS-279010.5.peg.587	Clustering-based subsystems	
Bacterial proteasome-activating AAA-ATPase (PAN)	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
FIG005453: Putative DeoR-family transcriptional regulator	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Pup ligase PafA, possible component of postulated heterodimer PafA-PafA'	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Pup ligase PafA' paralog, possible component of postulated heterodimer PafA-PafA'	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
FIG019733: possible DNA-binding protein	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Twin-arginine translocation protein TatC	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
FIG005666: putative helicase	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Twin-arginine translocation protein TatA	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
FIG033545: PE-PGRS family protein	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Proteasome subunit alpha (EC 3.4.25.1), bacterial	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Proteasome subunit beta (EC 3.4.25.1), bacterial	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Prokaryotic ubiquitin-like protein Pup	Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related	Clustering-based subsystems	proteosome related
Isochorismate synthase (EC 5.4.4.2) [enterobactin] siderophore	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Isochorismatase (EC 3.3.2.1) [enterobactin] siderophore	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Apo-aryl carrier domain of EntB	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) [enterobactin] siderophore	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [enterobactin] siderophore	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
4'-phosphopantetheinyl transferase (EC 2.7.8.-) [enterobactin] siderophore	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Enterobactin synthetase component F, serine activating enzyme (EC 2.7.7.-)	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Proofreading thioesterase in enterobactin biosynthesis EntH	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
FIG005032: Putative cytoplasmic protein YbdZ in enterobactin biosynthesis operon	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Enterobactin exporter EntS	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Enterobactin esterase	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Ferric enterobactin-binding periplasmic protein FepB (TC 3.A.1.14.2)	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Ferric enterobactin transport ATP-binding protein FepC (TC 3.A.1.14.2)	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Ferric enterobactin transport system permease protein FepD (TC 3.A.1.14.2)	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Ferric enterobactin transport system permease protein FepG (TC 3.A.1.14.2)	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Ferric enterobactin uptake protein FepE	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Outer membrane receptor for ferric enterobactin and colicins B, D	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Outer membrane receptor for ferric enterobactin PfeA	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Two-component sensor histidine kinase PfeS, enterobactin	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Two-component response regulator PfeR, enterobactin	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
Transcriptional regulator of AraC family, enterobactin-dependent, predicted	Siderophore_Enterobactin	Iron acquisition and metabolism	Siderophores
3-phenylpropionate dioxygenase, beta subunit (EC 1.14.12.19)	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
3-phenylpropionate dioxygenase, alpha subunit (EC 1.14.12.19)	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-)	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component (EC 1.18.1.3)	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
3-phenylpropionate dioxygenase ferredoxin subunit	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
Probable 3-phenylpropionic acid transporter	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	Phenylpropionate_Degradation	Secondary Metabolism	Biosynthesis of phenylpropanoids
Bipolar DNA helicase	Rad50-Mre11::SbcD-SbcC_DNA_Repair_Module	DNA Metabolism	DNA repair
DNA double-strand break repair protein mre11	Rad50-Mre11::SbcD-SbcC_DNA_Repair_Module	DNA Metabolism	DNA repair
DNA double-strand break repair rad50 ATPase	Rad50-Mre11::SbcD-SbcC_DNA_Repair_Module	DNA Metabolism	DNA repair
Single-stranded exonuclease associated with Rad50/Mre11 complex	Rad50-Mre11::SbcD-SbcC_DNA_Repair_Module	DNA Metabolism	DNA repair
FIG004819: Prepilin peptidase dependent protein B precursor	CBSS-364106.7.peg.3197	Clustering-based subsystems	
Prepilin peptidase dependent protein A precursor	CBSS-364106.7.peg.3197	Clustering-based subsystems	
FIG004136: Prepilin peptidase dependent protein C precursor	CBSS-364106.7.peg.3197	Clustering-based subsystems	
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)	CBSS-364106.7.peg.3197	Clustering-based subsystems	
FIG006270: hypothetical protein	CBSS-364106.7.peg.3197	Clustering-based subsystems	
Tetrachloroethene reductive dehalogenase PceA (EC 1.97.1.8)	Reductive_Dechlorination	Respiration	
Tetrachloroethene reductive dehalogenase PceA membrane-bound subunit	Reductive_Dechlorination	Respiration	
Tetrachloroethene reductive dehalogenase TceA	Reductive_Dechlorination	Respiration	
Tetrachloroethene reductive dehalogenase TceA membrane-bound subunit	Reductive_Dechlorination	Respiration	
membrane docking protein	Reductive_Dechlorination	Respiration	
Transcriptional regulatory protein CitB, DpiA	CitAB	Carbohydrates	Organic acids
Sensor kinase CitA, DpiB (EC 2.7.3.-)	CitAB	Carbohydrates	Organic acids
2-Oxoglutarate/Fe(II)-dependent oxygenase (EC 1.14.11)	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage-encoded plastoquinol terminal oxidase, PTOX	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
photosystem II protein D2 (PsbD)	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage-encoded high light-inducible protein, HliP	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cyanophage-encoded plastocyanin	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
photosystem II protein D1 (PsbA)	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein with ferrochetalase domain	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cyanophage-encoded photosynthetic antenna protein, CpeT	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage-encoded ferredoxin, PetF	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage ferredoxin oxidoreductase, PcyA	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cyanophage-encoded heme oxygenase (EC 1.14.99.3), Ho1	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
15,16-dihydrobiliverdin:ferredoxin oxidoreductase PebA (EC 1.3.7.2); Phycoerythrobilin	Phage_photosynthesis	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor	2,3-diketo-L-gulonate_TRAP_transporter	Membrane Transport	TRAP transporters
2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM	2,3-diketo-L-gulonate_TRAP_transporter	Membrane Transport	TRAP transporters
2,3-diketo-L-gulonate TRAP transporter large permease protein yiaN	2,3-diketo-L-gulonate_TRAP_transporter	Membrane Transport	TRAP transporters
Flp pilus assembly protein CpaD	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Flp pilus assembly protein RcpC/CpaB	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Flp pilus assembly protein TadB	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Flp pilus assembly protein TadD, contains TPR repeat	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Flp pilus assembly protein, pilin Flp	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
NLP/P60 family lipoprotein	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Similar to secretin RcpA/CpaC, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Type II/IV secretion system protein TadC, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Type IV prepilin peptidase TadV/CpaA	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Flp pilus assembly membrane protein TadE	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Flp pilus assembly protein RcpB	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Flp pilus assembly surface protein TadF, ATP/GTP-binding motif	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Protein TadG, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
ATPase with chaperone activity, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Outer membrane lipoprotein precursor, OmpA family	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Predicted ATPase with chaperone activity, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Similar to TadZ/CpaE, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
Von Willebrand factor type A domain protein, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
ATP-dependent helicase, DEAD/DEAH box family, associated with Flp pilus assembly	Widespread_colonization_island	Membrane Transport	Protein secretion system, Type II
CoB--CoM-reducing hydrogenase (Cys) alpha subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Cys) beta subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Cys) gamma subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Cys) delta subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Sec) alpha subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Sec) beta subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Sec) gamma subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Sec) delta subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
CoB--CoM-reducing hydrogenase (Sec) alpha' subunit	H2:CoM-S-S-HTP_oxidoreductase	Respiration	Electron donating reactions
Sensor histidine kinase ChvG (EC 2.7.3.-)	The_Chv_regulatory_system_of_Alphaproteobacteria	Regulation and Cell signaling	
DNA-binding response regulator ChvI	The_Chv_regulatory_system_of_Alphaproteobacteria	Regulation and Cell signaling	
PTS system permease (IIAMan), nitrogen regulatory IIA protein	The_Chv_regulatory_system_of_Alphaproteobacteria	Regulation and Cell signaling	
Phosphocarrier protein, nitrogen regulation associated	The_Chv_regulatory_system_of_Alphaproteobacteria	Regulation and Cell signaling	
HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-)	The_Chv_regulatory_system_of_Alphaproteobacteria	Regulation and Cell signaling	
ATP-binding protein ManX	The_Chv_regulatory_system_of_Alphaproteobacteria	Regulation and Cell signaling	
Sensor protein of zinc sigma-54-dependent two-component system	Zinc_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Response regulator of zinc sigma-54-dependent two-component system	Zinc_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Zinc resistance-associated protein	Zinc_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
IncI1 plasmid conjugative transfer ATPase PilQ	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer DNA primase	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer inner membrane protein PilR	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer integral membrane protein TraY	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer lipoprotein PilN	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer pilus-tip adhesin protein PilV	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer prepilin PilS	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein PilL	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein PilM	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraC	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraE	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraF	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraH	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraI	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraJ, related to pilus biogenesis/retracton protein	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraL	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraN	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraO	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraP	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraQ	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraR	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraT	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraU	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraV	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraW	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraX	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer putative membrane protein PilT	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid pilus assembly protein PilO	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid pilus assembly protein PilP	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type-IV sectretion leader peptidase/N-methyltransferase	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer NusG-type transcription antiterminator TraB	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraG	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraK	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraM	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraS	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein PilI	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Plasmid conjugative transfer endonuclease	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Shufflon-specific DNA recombinase	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein PilJ	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein TraA	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IncI1 plasmid conjugative transfer protein PilK	Type_4_conjugative_transfer_system,_IncI1_type	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	Prokaryotic_N-acetyltransferase	Experimental Subsystems	Protein processing and modification
Ribosomal-protein-S5p-alanine acetyltransferase	Prokaryotic_N-acetyltransferase	Experimental Subsystems	Protein processing and modification
Ribosomal-protein-L7p-serine acetyltransferase	Prokaryotic_N-acetyltransferase	Experimental Subsystems	Protein processing and modification
Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
Menaquinone-cytochrome C reductase iron-sulfur subunit	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
Menaquinone-cytochrome c reductase, cytochrome B subunit	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
Quinol oxidase-2, sulfocyanin (blue copper protein) (SoxE)	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
14 kDa peptide of ubiquinol-cytochrome C2 oxidoreductase complex	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial precursor (EC 1.10.2.2)	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	Electron accepting reactions
2,5-diketo-D-gluconate reductase A (EC 1.1.1.274)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate utilization system Gnt-I transcriptional repressor	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconokinase (EC 2.7.1.12)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
High-affinity gluconate transporter GntT	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Hypothetical oxidoreductase YqhD (EC 1.1.-.-)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Hypothetical transcriptional regulator YqhC	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
L-idonate 5-dehydrogenase (EC 1.1.1.264)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
L-idonate, D-gluconate, 5-keto-D-gluconate transporter	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Low-affinity gluconate/H+ symporter GntU	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Phosphogluconate dehydratase (EC 4.2.1.12)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Positive regulator of L-idonate catabolism	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate permease	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate operon transcriptional repressor	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate permease, Bsu4004 homolog	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Glucose 1-dehydrogenase (EC 1.1.1.47)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
oxidoreductase of aldo/keto reductase family, subgroup 1	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, cytochrome c	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, flavoprotein	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, gamma subunit	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
2-ketogluconate kinase (EC 2.7.1.13)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate dehydratase (EC 4.2.1.39)	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Gluconate transporter family protein	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, cytochrome c	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, flavoprotein	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, gamma subunit	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldA	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldB	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Predicted gluconate TRAP family transporter, DctM subunit	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Predicted gluconate TRAP family transporter, DctP subunit	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Predicted gluconate TRAP family transporter, DctQ subunit	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	Monosaccharides
Archaeosortase A	Archeaosortase_A_system	Protein Metabolism	Protein processing and modification
Beta-galactosidase (EC 3.2.1.23)	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Galactoside O-acetyltransferase (EC 2.3.1.18)	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Lactose and galactose permease, GPH translocator family	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Transcriptional repressor of the lac operon	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Lactose permease	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Evolved beta-D-galactosidase transcriptional repressor	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Evolved beta-D-galactosidase, alpha subunit	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Evolved beta-D-galactosidase, beta subunit	Lactose_utilization	Carbohydrates	Di- and oligosaccharides
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1)	Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_Superoxide_dismutase	Virulence	
FIG017534: hypothetical protein	Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_Superoxide_dismutase	Virulence	
FIG037441: Conserved transmembrane protein	Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_Superoxide_dismutase	Virulence	
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Aconitase A	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Aconitate hydratase (EC 4.2.1.3)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Aromatic-amino-acid aminotransferase (EC 2.6.1.57)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Fumarylacetoacetase (EC 3.7.1.2)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Maleylacetoacetate isomerase (EC 5.2.1.2)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Transcriptional regulator, IclR family	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Possible 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)	Homogentisate_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Arylsulfatase (EC 3.1.6.1)	Steroid_sulfates	Secondary Metabolism	Biologically active compounds in metazoan cell defence and differentiation
Steryl-sulfatase precursor (EC 3.1.6.2)	Steroid_sulfates	Secondary Metabolism	Biologically active compounds in metazoan cell defence and differentiation
Inner membrane protein YccF	CBSS-83333.1.peg.946	Clustering-based subsystems	
Putative efflux (PET) family inner membrane protein YccS	CBSS-83333.1.peg.946	Clustering-based subsystems	
DNA helicase IV	CBSS-83333.1.peg.946	Clustering-based subsystems	
Methylglyoxal synthase (EC 4.2.3.3)	CBSS-83333.1.peg.946	Clustering-based subsystems	
DNA transformation protein TfoX	CBSS-83333.1.peg.946	Clustering-based subsystems	
UPF0319 protein YccT precursor	CBSS-83333.1.peg.946	Clustering-based subsystems	
Succinyl-CoA synthetase, alpha subunit-related enzymes	CBSS-83333.1.peg.946	Clustering-based subsystems	
hemimethylated DNA binding protein YccV	CBSS-83333.1.peg.946	Clustering-based subsystems	
LSU m5C1962 methyltransferase RlmI	CBSS-83333.1.peg.946	Clustering-based subsystems	
Cell division inhibitor	CBSS-83333.1.peg.946	Clustering-based subsystems	
Helicase IV (EC 3.6.1.-)	CBSS-83333.1.peg.946	Clustering-based subsystems	
Methylmalonyl-CoA mutase (EC 5.4.99.2)	Succinyl-CoA_to_Propionyl-CoA_	Miscellaneous	Conversion of succinly-CoA to propionyl-CoA
YgfD: protein that forms a complex with the methylmalonyl-CoA mutase in a pathway for conversion of succinyl-CoA to propionyl-CoA	Succinyl-CoA_to_Propionyl-CoA_	Miscellaneous	Conversion of succinly-CoA to propionyl-CoA
Methylmalonyl-CoA decarboxylase (EC 4.1.1.41)	Succinyl-CoA_to_Propionyl-CoA_	Miscellaneous	Conversion of succinly-CoA to propionyl-CoA
Propionyl-CoA:succinyl-CoA transferase	Succinyl-CoA_to_Propionyl-CoA_	Miscellaneous	Conversion of succinly-CoA to propionyl-CoA
Single stranded DNA-binding protein, phage-associated	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
DNA polymerase (EC 2.7.7.7), phage-associated	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage DNA polymerase clamp loader subunit	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Sliding clamp DNA polymerase accessory protein, phage associated	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage recombination-related endonuclease Gp46	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage recombination-related endonuclease Gp47	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage terminase, small subunit	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T4-like phage RNA polymerase sigma factor for late transcription	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T4-like phage DexA exonuclease A	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T4-like phage head completion, neck hetero-dimeric protein (T4-like gp13)	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T4-like phage head completion, neck hetero-dimeric protein (T4-like gp14)	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage head completion protein	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage prohead core scaffold protein and protease	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage scaffold prohead core protein	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage tail completion and sheath stabilization protein	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T4-like phage baseplate hub + tail lysozyme	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage tail sheath monomer	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage tail tube monomer	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage baseplate hub subunit	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage baseplate tail tube cap	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
DNA primase (EC 2.7.7.-)	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage endoribonulcease translational repressor of early genes, regA	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage DNA polymerase clamp loader subunit Gp62	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage major capsid protein	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage terminase, large subunit	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Thymidylate synthase ThyX (EC 2.1.1.-)	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T4-like phage baseplate wedge component Gp8	T4-like_phage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
(S)-2-haloacid dehalogenase (EC 3.8.1.2)	Experimental-DCE_degrader	Experimental Subsystems	
protein of unknown function DUF485	Experimental-DCE_degrader	Experimental Subsystems	
Putative symporter yjcG	Experimental-DCE_degrader	Experimental Subsystems	
Cyclohexanone monooxygenase (EC 1.14.13.22)	Experimental-DCE_degrader	Experimental Subsystems	
6-hexanolactone hydrolase	Experimental-DCE_degrader	Experimental Subsystems	
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase	Experimental-DCE_degrader	Experimental Subsystems	
Sigma-54-dependent transcriptional activator	Experimental-DCE_degrader	Experimental Subsystems	
Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)	Experimental-DCE_degrader	Experimental Subsystems	
Glutathione S-transferase (EC 2.5.1.18)	Experimental-DCE_degrader	Experimental Subsystems	
probable iron-sulfur binding protein YPO1417	Experimental-DCE_degrader	Experimental Subsystems	
Glutathione reductase (EC 1.8.1.7)	Experimental-DCE_degrader	Experimental Subsystems	
GTPase and tRNA-U34 5-formylation enzyme TrmE	RNA_modification_cluster	Clustering-based subsystems	
Inner membrane protein translocase component YidC, long form	RNA_modification_cluster	Clustering-based subsystems	
Protein YidD	RNA_modification_cluster	Clustering-based subsystems	
Ribonuclease P protein component (EC 3.1.26.5)	RNA_modification_cluster	Clustering-based subsystems	
LSU ribosomal protein L34p	RNA_modification_cluster	Clustering-based subsystems	
Inner membrane protein translocase component YidC, short form OxaI-like	RNA_modification_cluster	Clustering-based subsystems	
intein-containing	Inteins	Protein Metabolism	Protein processing and modification
Carboxy-terminal intein-mediated trans-splice	Inteins	Protein Metabolism	Protein processing and modification
Amino-terminal intein-mediated trans-splice	Inteins	Protein Metabolism	Protein processing and modification
Polysaccharide export lipoprotein Wza	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48)	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Tyrosine-protein kinase Wzc (EC 2.7.10.2)	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosynthesis glycosyl transferase WcaA	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosynthesis acetyltransferase WcaB (EC 2.3.1.-)	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosynthesis glycosyl transferase WcaC	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid polymerase WcaD	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosynthesis glycosyl transferase WcaE	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-)	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
GDP-mannose 4,6-dehydratase (EC 4.2.1.47)	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
GDP-L-fucose synthetase (EC 1.1.1.271)	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
GDP-mannose mannosyl hydrolase (EC 3.6.1.-)	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosysnthesis glycosyl transferase WcaI	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Lipopolysaccharide biosynthesis protein WzxC	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosysnthesis protein WcaK	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Colanic acid biosynthesis glycosyl transferase WcaL	Colanic_acid_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
cell division protein, CdvC	Archaeal_Cdv_cell_division_system	Experimental Subsystems	Cell Division and Cell Cycle
cell division protein, CdvA	Archaeal_Cdv_cell_division_system	Experimental Subsystems	Cell Division and Cell Cycle
cell division protein, CdvB	Archaeal_Cdv_cell_division_system	Experimental Subsystems	Cell Division and Cell Cycle
archaeal Vps4 group 2	Archaeal_Cdv_cell_division_system	Experimental Subsystems	Cell Division and Cell Cycle
Peptidase C14, caspase catalytic subunit p20	CBSS-316056.14.peg.880	Clustering-based subsystems	Peptidase C-14 or homohentisate metabolism related cluster in Rhodopseudomonas
beta-lactamase-like	CBSS-316056.14.peg.880	Clustering-based subsystems	Peptidase C-14 or homohentisate metabolism related cluster in Rhodopseudomonas
Bsl0345 protein	CBSS-316056.14.peg.880	Clustering-based subsystems	Peptidase C-14 or homohentisate metabolism related cluster in Rhodopseudomonas
Possible 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)	CBSS-316056.14.peg.880	Clustering-based subsystems	Peptidase C-14 or homohentisate metabolism related cluster in Rhodopseudomonas
DNA-binding response regulator ResD	Two-component_Response_Regulator_of_Virulence_ResDE	Regulation and Cell signaling	Regulation of virulence
Sensor histidine kinase ResE (EC 2.7.3.-)	Two-component_Response_Regulator_of_Virulence_ResDE	Regulation and Cell signaling	Regulation of virulence
Toxin co-regulated pilus biosynthesis protein I, chemoreceptor, negative regulator of TcpA	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein P, transcriptional activator of ToxT promoter	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein H, transcriptional activator of ToxT promoter	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilin A	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein B	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein Q	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein C, outer membrane protein	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein R	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein D	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein S	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein T, putative ATP-binding translocase of TcpA	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein E, anchors TcpT to membrane	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Toxin co-regulated pilus biosynthesis protein F, putative outer membrane channel for TcpA extrusion	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
TCP pilus virulence regulatory protein ToxT, transcription activator	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
TCP pilin signal peptidase, TcpA processing	Toxin_co-regulated_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Autoinducer synthesis protein LuxI	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
Transcriptional activator protein LuxR	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
Transcriptional regulator LasR	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
N-acyl-L-homoserine lactone synthetase LasI	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
N-acyl-L-homoserine lactone synthetase RhlL	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
Transcriptional regulator RhlR	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
Transcriptional activator protein solR	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
FIG005933: hypothetical protein	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
Autoinducer synthase BpsI	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
Autoinducer-binding transcriptional regulator BpsR	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
hypothetical protein clustered with LuxR	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
Autoinducer synthesis protein SolI	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
N-acyl-L-homoserine lactone synthetase TraI	Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_	Virulence	Quorum sensing and biofilm formation
DNA mismatch repair protein MutS	DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein	DNA Metabolism	DNA repair
RecA protein	DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein	DNA Metabolism	DNA repair
Regulatory protein RecX	DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein	DNA Metabolism	DNA repair
Protein Implicated in DNA repair function with RecA and MutS	DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein	DNA Metabolism	DNA repair
Polyketide beta-ketoacyl synthase WhiE-KS paralog	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Polyketide chain length factor WhiE-CLF paralog	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Polyketide beta-ketoacyl synthase WhiE-KS	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Polyketide chain length factor WhiE-CLF	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Acyl carrier protein WhiE V	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Aromatase WhiE VI	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Polyketide cyclase WhiE VII	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Polyketide cyclase WhiE II	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
WhiE I protein of unknown function	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
Polyketide hydroxylase WhiE VIII	Spore_pigment_biosynthetic_cluster_in_Actinomycetes	Dormancy and Sporulation	
PvcA protein, related to known isonitrile synthases	Paerucumarin_Biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
PvcB protein, related to amino acid oxidizing enzymes	Paerucumarin_Biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
HTH-type transcriptional regulator PtxR	Paerucumarin_Biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
PvcC protein, related to two-component flavin adenine dinucleotide-dependent monooxygenases	Paerucumarin_Biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
PvcD protein, related to two-component flavin adenine dinucleotide-dependent monooxygenases	Paerucumarin_Biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Formylmethanofuran dehydrogenase subunit A (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) subunit B (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) subunit D (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) operon gene F (polyferredoxin)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) operon gene G	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) operon gene H	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase (EC 2.3.1.101)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	Methanogenesis	Carbohydrates	One-carbon Metabolism
F420-dependent methylenetetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	Methanogenesis	Carbohydrates	One-carbon Metabolism
F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase (EC 1.5.99.11)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit B (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit F (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H (EC 2.1.1.86)	Methanogenesis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit X	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase associated protein	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase I alpha subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase II alpha subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase I beta subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase II beta subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase I gamma subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase II gamma subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase operon protein C	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase operon protein D	Methanogenesis	Carbohydrates	One-carbon Metabolism
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) subunit C (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase alpha subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase beta subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase gamma subunit (EC 2.8.4.1)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase subunit B (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) subunit B (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase subunit C (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) subunit C (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase subunit D (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) subunit D (EC 1.2.99.5)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) operon gene E	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) operon gene F (polyferredoxin)	Methanogenesis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) operon gene G	Methanogenesis	Carbohydrates	One-carbon Metabolism
FIG005478: Porin, Gram-negative type	ABC-type_iron_transport_system	Iron acquisition and metabolism	
ABC-type Fe3+ transport system, periplasmic component	ABC-type_iron_transport_system	Iron acquisition and metabolism	
ABC-type spermidine/putrescine transport systems, ATPase components	ABC-type_iron_transport_system	Iron acquisition and metabolism	
ABC Fe3+ siderophore transporter, inner membrane subunit	ABC-type_iron_transport_system	Iron acquisition and metabolism	
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Formaldehyde dehydrogenase MscR, NAD/mycothiol-dependent (EC 1.2.1.66)	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Lysophospholipase (EC 3.1.1.5)	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Mycothiol S-conjugate amidase Mca	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
NADPH-dependent mycothiol reductase Mtr	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Phosphate transport system regulatory protein PhoU	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Putative hydrolase in cluster with formaldehyde/S-nitrosomycothiol reductase MscR	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
S-nitrosomycothiol reductase MscR	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Similar to Glutamate--cysteine ligase (EC 6.3.2.2), function unknown	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Uncharacterized protein Rv0487/MT0505 clustered with mycothiol biosynthesis gene	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
Maleylpyruvate isomerase, mycothiol-dependent (EC 5.2.1.4)	Glutathione_analogs:_mycothiol	Stress Response	Oxidative stress
FIG022869: Oxidoreductase, GMC family	CBSS-208964.1.peg.365	Clustering-based subsystems	
FIG028932: hypothetical protein	CBSS-208964.1.peg.365	Clustering-based subsystems	
HNH homing endonuclease	Phage_introns	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage-associated HNH homing endonuclease	Phage_introns	Experimental Subsystems	Phages, Prophages, Transposable elements
L-lactate dehydrogenase (EC 1.1.1.27)	CR_clusters_Euk_6_lactateDehB	Experimental Subsystems	
ATP-dependent DNA helicase Q1	CR_clusters_Euk_6_lactateDehB	Experimental Subsystems	
Glycogen [starch] synthase, muscle (EC 2.4.1.11)	CR_clusters_Euk_6_lactateDehB	Experimental Subsystems	
Vesicle transport protein GOT1B	CR_clusters_Euk_6_lactateDehB	Experimental Subsystems	
ATP-sensitive inward rectifier potassium channel 8	CR_clusters_Euk_6_lactateDehB	Experimental Subsystems	
ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11)	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4)	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
DNA topoisomerase I (EC 5.99.1.2)	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8)	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Plasmid partitioning protein ParA	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Single-stranded DNA-binding protein	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV secretion system protein VirD4	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0042	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0004	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0007	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0008	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0009	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0010	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0012	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0015	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0016	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0019/pVir0020	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0021	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Hypothetical protein pVir0029, glutamine-rich	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV secretion/competence protein (VirB10)	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV secretion/competence protein (VirB9)	pVir_Plasmid_of_Campylobacter	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Pre-mRNA splicing factor PRP1	Spliceosome	RNA Metabolism	RNA processing and modification
U4/U6 small nuclear ribonucleoprotein component PRP3	Spliceosome	RNA Metabolism	RNA processing and modification
Pre-mRNA splicing factor PRP8	Spliceosome	RNA Metabolism	RNA processing and modification
Hypothetical protein, bax gene locus	CBSS-404974.3.peg.999	Clustering-based subsystems	
Putative Bax protein	CBSS-404974.3.peg.999	Clustering-based subsystems	
tRNA(Cytosine32)-2-thiocytidine synthetase	CBSS-404974.3.peg.999	Clustering-based subsystems	
Type cbb3 cytochrome oxidase biogenesis protein CcoI	CBSS-404974.3.peg.999	Clustering-based subsystems	
Copper-translocating P-type ATPase (EC 3.6.3.4)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Fumarate and nitrate reduction regulatory protein	CBSS-404974.3.peg.999	Clustering-based subsystems	
Putative analog of CcoH, COG3198	CBSS-404974.3.peg.999	Clustering-based subsystems	
Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein	CBSS-404974.3.peg.999	Clustering-based subsystems	
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Universal stress protein E	CBSS-404974.3.peg.999	Clustering-based subsystems	
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion	CBSS-404974.3.peg.999	Clustering-based subsystems	
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
ABC transporter, periplasmic spermidine putrescine-binding protein potD (TC_3.A.1.11.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Probable proline and glycine rich transmembrane protein gene in bax	CBSS-404974.3.peg.999	Clustering-based subsystems	
Spermidine Putrescine transport ATP-binding protein potA (TC_3.A.1.11.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Spermidine Putrescine ABC transporter permease component potB (TC_3.A.1.11.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)	CBSS-404974.3.peg.999	Clustering-based subsystems	
NAD-dependent protein deacetylase of SIR2 family	CBSS-404974.3.peg.999	Clustering-based subsystems	
Ammonia permease	CBSS-404974.3.peg.999	Clustering-based subsystems	
Ammonium transporter	CBSS-404974.3.peg.999	Clustering-based subsystems	
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	CBSS-404974.3.peg.999	Clustering-based subsystems	
Sodium/alanine symporter	CBSS-404974.3.peg.999	Clustering-based subsystems	
Chromosome segregation ATPase	CBSS-404974.3.peg.999	Clustering-based subsystems	
Tripeptide aminopeptidase (EC 3.4.11.4)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Thermostable carboxypeptidase 1	CBSS-404974.3.peg.999	Clustering-based subsystems	
Cobalt-zinc-cadmium resistance protein	CBSS-404974.3.peg.999	Clustering-based subsystems	
Y4oB	CBSS-404974.3.peg.999	Clustering-based subsystems	
Y4oC	CBSS-404974.3.peg.999	Clustering-based subsystems	
Nucleoside permease NupC	CBSS-404974.3.peg.999	Clustering-based subsystems	
NAD-dependent deacetylase (EC 3.5.1.-)	CBSS-404974.3.peg.999	Clustering-based subsystems	
transcriptional regulator, Crp/Fnr family	CBSS-404974.3.peg.999	Clustering-based subsystems	
GGDEF family protein	CBSS-404974.3.peg.999	Clustering-based subsystems	
Putrescine ABC transporter putrescine-binding protein potF (TC 3.A.1.11.2)	CBSS-404974.3.peg.999	Clustering-based subsystems	
Putrescine transport system permease protein potH (TC 3.A.1.11.2)	CBSS-404974.3.peg.999	Clustering-based subsystems	
universal stress protein family	CBSS-404974.3.peg.999	Clustering-based subsystems	
Universal stress protein UspA	CBSS-404974.3.peg.999	Clustering-based subsystems	
Universal stress protein E # interrupted	CBSS-404974.3.peg.999	Clustering-based subsystems	
Phage terminase, large subunit	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, small subunit	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage portal protein	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage capsid protein	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage DNA packaging protein	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (lambda-like 5'-extended COS ends)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (T7-like direct terminal repeats)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage DNA binding protein	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
head decoration protein (lambda gpD-like)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (3'-extended COS ends)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (T4-like headful)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (phi29-like gp16)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (Mu-like headful)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage packaged DNA stabilization protein	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (P2-like 5'-extended COS ends)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage capsid packaging protein	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
head decoration and polarity suppression protein (P4 Psu-like)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
terminal protein (phi29-like gp3), terminase small subunit analog	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
head decoration protein (P22 Dec-like)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
head decoration protein (T4 Soc-like)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
head decoration protein (T4 Hoc-like)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit (P22-like headful)	Phage_packaging_machinery	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
2-methylaconitate racemase	2-methylcitrate_to_2-methylaconitate_metabolism_cluster	Carbohydrates	Organic acids
2-Methylcitrate dehydratase AcnD	2-methylcitrate_to_2-methylaconitate_metabolism_cluster	Carbohydrates	Organic acids
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
NADH pyrophosphatase (EC 3.6.1.22)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
ADP compounds hydrolase NudE (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
ADP-ribose pyrophosphatase (EC 3.6.1.13)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Thiamin-phosphate pyrophosphorylase-like protein	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Hypothetical nudix hydrolase YeaB	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Putative Nudix hydrolase YfcD (EC 3.6.-.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix-like NDP and NTP phosphohydrolase YmfB	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Low G+C gram positive nudix hydrolase YtkD (EC 3.6.-.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR1776 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
5-methyl-dCTP pyrophosphohydrolase (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
GDP-mannose mannosyl hydrolase (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix hydrolase family protein YffH	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix hydrolase family protein PA3470	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
GDP-mannose pyrophosphatase YffH	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Uridine diphosphate glucose pyrophosphatase (EC 3.6.1.45)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0550 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix family (d)NDPase DR0975	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0092 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0149 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0261 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0274 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0329 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0784 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR1025 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR2356 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Pyrimidine deoxynucleoside triphosphate (dYTP) pyrophosphohydrolase YfoO	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
ADP-ribose pyrophosphatase, mitochondrial precursor (EC 3.6.1.13)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
dATP pyrophosphohydrolase NudB (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0004 (EC 3.6.1.-)	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	Detoxification
Cold shock protein CspA	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspC	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspD	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspE	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspG	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspH	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspB	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspF	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Cold shock protein CspI	Cold_shock,_CspA_family_of_proteins	Stress Response	Cold shock
Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)	Polysaccharide_deacetylases	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide deacetylase	Polysaccharide_deacetylases	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide intercellular adhesin (PIA) biosynthesis deacetylase IcaB (EC 3.-.-.-)	Polysaccharide_deacetylases	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative reductase (alkanesulfonate metabolism)	Putative_sulfate_assimilation_cluster	Clustering-based subsystems	
Probable ferredoxin	Putative_sulfate_assimilation_cluster	Clustering-based subsystems	
Alkanesulfonates-binding protein	Putative_sulfate_assimilation_cluster	Clustering-based subsystems	
FOG: HEAT repeat	Putative_sulfate_assimilation_cluster	Clustering-based subsystems	
Putative alkanesulfonate metabolism utilization regulator	Putative_sulfate_assimilation_cluster	Clustering-based subsystems	
Negative transcriptional regulator	Streptococcus_pyogenes_Transcription_Regulators	Experimental Subsystems	
Transcriptional regulator, RofA-like Protein (RALP)	Streptococcus_pyogenes_Transcription_Regulators	Experimental Subsystems	
Strepotococcal cysteine protease (Streptopain) (EC 3.4.22.10)	Streptococcus_pyogenes_Transcription_Regulators	Experimental Subsystems	
Listeria RofA-like transcriptional regulator	Streptococcus_pyogenes_Transcription_Regulators	Experimental Subsystems	
Transcriptional regulator, RofA	Streptococcus_pyogenes_Transcription_Regulators	Experimental Subsystems	
RofA-like transcriptional regulator	Streptococcus_pyogenes_Transcription_Regulators	Experimental Subsystems	
Heme-binding SCHIC domain protein, putative oxygen sensor	Oxygen_and_light_sensor_PpaA-PpsR	Regulation and Cell signaling	
Transcriptional regulator, PpsR	Oxygen_and_light_sensor_PpaA-PpsR	Regulation and Cell signaling	
Heme oxygenase (EC 1.14.99.3)	Oxygen_and_light_sensor_PpaA-PpsR	Regulation and Cell signaling	
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)	Oxygen_and_light_sensor_PpaA-PpsR	Regulation and Cell signaling	
PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation	Oxygen_and_light_sensor_PpaA-PpsR	Regulation and Cell signaling	
FUPA32 P-type ATPase	Family_32_FUPA32_P-type_ATPase		
Carbonic anhydrase (EC 4.2.1.1)	Family_32_FUPA32_P-type_ATPase		
Copper chaperone	Family_32_FUPA32_P-type_ATPase		
Peptide deformylase (EC 3.5.1.88)	Family_32_FUPA32_P-type_ATPase		
unknown next to FUPA32	Family_32_FUPA32_P-type_ATPase		
Bestrophin (putt Cl chnl) superfamily	Family_32_FUPA32_P-type_ATPase		
Mov34/MPN/PAD-1 family	Family_32_FUPA32_P-type_ATPase		
Predicted transcriptional regulator of pyridoxine metabolism	Pyridoxine_regulons		
Pyridoxal kinase (EC 2.7.1.35)	Pyridoxine_regulons		
Substrate-specific component PdxU of predicted pyridoxine ECF transporter	Pyridoxine_regulons		
FIG003955: protein of unknown function	Pyridoxine_regulons		
Novel pyridoxal kinase, thiD family (EC 2.7.1.35)	Pyridoxine_regulons		
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Pyridoxine_regulons		
Hypothetical protein ywlG	Pyridoxine_regulons		
Permease of the drug/metabolite transporter (DMT) superfamily	Pyridoxine_regulons		
Transcriptional regulator, GntR family / Aspartate aminotransferase (EC 2.6.1.1)	Pyridoxine_regulons		
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxine_regulons		
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxine_regulons		
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Pyridoxine_regulons		
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Pyridoxine_regulons		
Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)	Pyridoxine_regulons		
Transporter, LysE family	Pyridoxine_regulons		
Benzoate transport protein	Pyridoxine_regulons		
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	Pyridoxine_regulons		
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	Pyridoxine_regulons		
Transcriptional regulator, MocR family, putative Taurine regulator tauR	Pyridoxine_regulons		
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter	Pyridoxine_regulons		
RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)	RNA_3'-terminal_phosphate_cyclase	RNA Metabolism	RNA processing and modification
Protein RtcB	RNA_3'-terminal_phosphate_cyclase	RNA Metabolism	RNA processing and modification
Transcriptional regulatory protein RtcR	RNA_3'-terminal_phosphate_cyclase	RNA Metabolism	RNA processing and modification
Protein with similarity to RtcB	RNA_3'-terminal_phosphate_cyclase	RNA Metabolism	RNA processing and modification
Uncharacterized protein ImpB	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpC	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein similar to VCA0109	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Protein ImpG/VasA	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpH/VasB	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpI/VasC	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Type VI secretion lipoprotein/VasD	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpJ/VasE	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Outer membrane protein ImpK/VasF, OmpA/MotB domain	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
ClpB protein	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Sigma-54 dependent transcriptional regulator	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpA	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
IcmF-related protein	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
VgrG protein	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Secreted protein Hcp	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Type VI secretion protein VasI	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Type VI secretion-related protein VasL	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
VgrG-3 protein	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpD	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Protein of avirulence locus ImpE	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpF	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Protein phosphatase ImpM	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Phosphoprotein phosphatase PppA	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Serine/threonine protein kinase (EC 2.7.11.1) PpkA	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Inner membrane protein DotU	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein homologous to Paeru. PA2364	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Serine/threonine-protein kinase ImpN involved in nitrogen fixation	Type_VI_secretion_systems	Membrane Transport	Protein secretion system, Type VI
Enoyl-CoA hydratase (EC 4.2.1.17), anthrose biosynthesis	Anthrose_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Glycosyl transferase ,group 2 family, anthrose biosynthesis	Anthrose_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Aminotransferase, anthrose biosynthesis	Anthrose_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
O-acetyltransferase, anthrose biosynthesis	Anthrose_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Methyltransferase, anthrose biosynthesis	Anthrose_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Glycosyl transferase, group 1 family, anthrose biosynthesis	Anthrose_Biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Phosphate regulon transcriptional regulatory protein PhoB	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Phosphate starvation-inducible protein PhoH	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Phosphate regulon sensor protein PhoR (EC 2.7.3.-)	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Alkaline phosphatase (EC 3.1.3.1)	P_uptake_(cyanobacteria)	Phosphorus Metabolism	
Unknown pentose kinase TM0952	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Unknown pentose isomerase TM0951	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Transketolase, N-terminal section (EC 2.2.1.1)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Transketolase, C-terminal section (EC 2.2.1.1)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Transketolase (EC 2.2.1.1)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Ribokinase (EC 2.7.1.15)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Hypothetical protein, no COGs	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Ribose operon repressor	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Unknown pentose utilization regulator, DeoR family	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Unknown pentose utilization regulator 2, DeoR family	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Unknown pentose isomerase ECA1953	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Unknown pentose utilization regulator, LacI family	Unknown_pentose_utilization	Carbohydrates	Monosaccharides
Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline dehydrogenase (EC 1.1.99.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline-sulfatase (EC 3.1.6.6)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
HTH-type transcriptional regulator BetI	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
High-affinity choline uptake protein BetT	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Sarcosine oxidase alpha subunit (EC 1.5.3.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Sarcosine oxidase beta subunit (EC 1.5.3.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Sarcosine oxidase delta subunit (EC 1.5.3.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Sarcosine oxidase gamma subunit (EC 1.5.3.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Glycine betaine ABC transport system permease protein	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
GbcA Glycine betaine demethylase subunit A	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
GbcB Glycine betaine demethylase subunit B	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Glycine betaine/L-proline ABC transporter, glycine betaine/L-proline- binding/permease protein	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Glycine betaine transporter OpuD	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Glycine betaine ABC transport system, permease/glycine betaine-binding protein OpuABC	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Glycine betaine ABC transport system, permease protein OpuAB	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Alcohol dehydrogenase GbsB (type III ), essential for the utilization of choline (EC 1.1.1.1)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline ABC transport system, ATP-binding protein OpuBA	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline ABC transport system, choline-binding protein OpuBC	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline ABC transport system, permease protein OpuBB	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline ABC transport system, permease protein OpuBD	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32)	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline binding protein D	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Choline binding protein A	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Stress Response	Osmotic stress
Negative regulator of allantoin and glyoxylate utilization operons	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
Glyoxylate carboligase (EC 4.1.1.47)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
Hydroxypyruvate isomerase (EC 5.3.1.22)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
Hydroxypyruvate reductase (EC 1.1.1.81)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
Glycerate kinase (EC 2.7.1.31)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
Glucarate dehydratase (EC 4.2.1.40)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
D-galactarate dehydratase (EC 4.2.1.42)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
D-Glucuronolactone:NAD+ oxidoreductase (EC 1.2.1.3)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
L-gulono-1,4-lactone oxidase (EC 1.1.3.8)	The_Tartronate_Semialdehyde_Hub	Experimental Subsystems	Monosaccharides
ATP phosphoribosyltransferase (EC 2.4.2.17)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Adenylosuccinate synthetase (EC 6.3.4.4)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Histidyl-tRNA synthetase (EC 6.1.1.21)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
tRNA-His	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase (EC 3.1.3.15)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Histidinol dehydrogenase (EC 1.1.1.23)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase [alternative form] (EC 3.1.3.15)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase regulatory subunit, divergent variant (EC 2.4.2.17)	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
tRNA-His-GUG	Histidine_Biosynthesis	Amino Acids and Derivatives	Histidine Metabolism
Na(+) H(+) antiporter subunit A	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit B	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit C	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit D	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit E	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit F	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit G	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.3)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.3)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.3)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit D (TC 2.A.63.1.3)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit E (TC 2.A.63.1.3)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.3)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit G (TC 2.A.63.1.3)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit D (TC 2.A.63.1.2)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.2)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit E (TC 2.A.63.1.2)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.2)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit G (TC 2.A.63.1.2)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.2)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.2)	Sodium_Hydrogen_Antiporter	Membrane Transport	Uni- Sym- and Antiporters
Deoxyhypusine synthase (EC 2.5.1.46)	Modification_of_eukaryotic_initiation_factor_5A	Protein Metabolism	Protein processing and modification
Eukaryotic translation initiation factor 5A	Modification_of_eukaryotic_initiation_factor_5A	Protein Metabolism	Protein processing and modification
Deoxyhypusine hydroxylase (EC 1.14.99.29)	Modification_of_eukaryotic_initiation_factor_5A	Protein Metabolism	Protein processing and modification
Translation elongation factor P	Modification_of_eukaryotic_initiation_factor_5A	Protein Metabolism	Protein processing and modification
Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)	Taurine_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Taurine transport ATP-binding protein TauB	Taurine_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Taurine transport system permease protein TauC	Taurine_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Taurine-binding periplasmic protein TauA	Taurine_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Taurine transporter substrate-binding protein	Taurine_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Chitin catabolic cascade sensor histidine kinase ChiS	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
(GlcNAc)2 ABC transporter, periplasmic substrate-binding protein	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
(GlcNAc)2 ABC transporter, permease component 1	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
(GlcNAc)2 ABC transporter, permease component 2	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
(GlcNAc)2 ABC transporter, ATP-binding component 1	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
(GlcNAc)2 ABC transporter, ATP-binding component 2	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
Glucosamine-link cellobiase (EC 3.2.1.21)	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
Glucosamine kinase GpsK (EC 2.7.1.8)	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
Beta-N-acetylhexosaminidase, (GlcNAc)2 catabolism	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
Chitobiose phosphorylase (EC 2.4.1.-)	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
GlcNAc phosphomutase (EC 5.4.2.3)	(GlcNAc)2_Catabolic_Operon	Carbohydrates	Aminosugars
Tellurium resistance protein TerD	Tellurium_resistance	Experimental Subsystems	
TerC-like integral membrane protein	Tellurium_resistance	Experimental Subsystems	
Toxic anion resistance protein TelA	Tellurium_resistance	Experimental Subsystems	
FIG013452: putative tellurium resistance protein	Tellurium_resistance	Experimental Subsystems	
DUF124 domain-containing protein	Tellurium_resistance	Experimental Subsystems	
Integral membrane protein TerC	Tellurium_resistance	Experimental Subsystems	
Tellurium resistance protein TerA	Tellurium_resistance	Experimental Subsystems	
Tellurite resistance protein TerB	Tellurium_resistance	Experimental Subsystems	
promoter region for PTS region, with flanking inverted repeats	PTS_Systems_in_Bacteroides	Experimental Subsystems	
Site-specific recombinase Mpi	PTS_Systems_in_Bacteroides	Experimental Subsystems	
Tyrosine type site-specific recombinase, Mpi regulator	PTS_Systems_in_Bacteroides	Experimental Subsystems	
Transcription antitermination protein UpdY	PTS_Systems_in_Bacteroides	Experimental Subsystems	
UpdZ protein	PTS_Systems_in_Bacteroides	Experimental Subsystems	
FIG048477: Hypothetical protein	PTS_Systems_in_Bacteroides	Experimental Subsystems	
FIG045364: Hypothetical protein	PTS_Systems_in_Bacteroides	Experimental Subsystems	
Tyrosine type site-specific recombinase, probable regulator for PS locus	PTS_Systems_in_Bacteroides	Experimental Subsystems	
Hypothetical protein clustered with UpdY	PTS_Systems_in_Bacteroides	Experimental Subsystems	
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
4-hydroxyproline epimerase (EC 5.1.1.8)	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
D-amino-acid oxidase (EC 1.4.3.3)	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
Hydroxyproline dehydratase putative	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
Aldehyde dehydrogenase (EC 1.2.1.3) in 4-hydroxyproline catabolic gene cluster	Experimental_-_hydroxyproline_metabolism	Experimental Subsystems	
Ccs1/ResB-related putative cytochrome C-type biogenesis protein	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
Cytochrome c-type biogenesis protein CcsA/ResC	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
Thiol:disulfide oxidoreductase related to ResA	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
Hypothetical, related to broad specificity phosphatases COG0406	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
Hypothetical, similarity to phosphoglycerate mutase	CBSS-196164.1.peg.461	Clustering-based subsystems	Cytochrome biogenesis
FIG006438: hypothetical protein	CBSS-1313.3.peg.147	Clustering-based subsystems	
Inositol-1-monophosphatase (EC 3.1.3.25)	CBSS-1313.3.peg.147	Clustering-based subsystems	
Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-)	Hydrogenases	Respiration	Electron donating reactions
Fe-S-cluster-containing hydrogenase components 1	Hydrogenases	Respiration	Electron donating reactions
Sulfhydrogenase II subunit a	Hydrogenases	Respiration	Electron donating reactions
Sulfhydrogenase II subunit b	Hydrogenases	Respiration	Electron donating reactions
Sulfhydrogenase II subunit d	Hydrogenases	Respiration	Electron donating reactions
Sulfhydrogenase II subunit g	Hydrogenases	Respiration	Electron donating reactions
hydrogenase, subunit gamma related protein	Hydrogenases	Respiration	Electron donating reactions
NAD-reducing hydrogenase subunit HoxE (EC 1.12.1.2)	Hydrogenases	Respiration	Electron donating reactions
NAD-reducing hydrogenase subunit HoxF (EC 1.12.1.2)	Hydrogenases	Respiration	Electron donating reactions
NAD-reducing hydrogenase subunit HoxH (EC 1.12.1.2)	Hydrogenases	Respiration	Electron donating reactions
NAD-reducing hydrogenase subunit HoxU (EC 1.12.1.2)	Hydrogenases	Respiration	Electron donating reactions
NAD-reducing hydrogenase subunit HoxY (EC 1.12.1.2)	Hydrogenases	Respiration	Electron donating reactions
NADH-reducing hydrogenase maturation factor	Hydrogenases	Respiration	Electron donating reactions
Uptake hydrogenase large subunit (EC 1.12.99.6)	Hydrogenases	Respiration	Electron donating reactions
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	Hydrogenases	Respiration	Electron donating reactions
Hydrogenase maturation protease (EC 3.4.24.-)	Hydrogenases	Respiration	Electron donating reactions
Quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit	Hydrogenases	Respiration	Electron donating reactions
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)	Hydrogenases	Respiration	Electron donating reactions
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)	Hydrogenases	Respiration	Electron donating reactions
Ni,Fe-hydrogenase I cytochrome b subunit	Hydrogenases	Respiration	Electron donating reactions
Ni/Fe-hydrogenase 2 B-type cytochrome subunit	Hydrogenases	Respiration	Electron donating reactions
Periplasmic [Fe] hydrogenase (EC 1.12.7.2)	Hydrogenases	Respiration	Electron donating reactions
Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2)	Hydrogenases	Respiration	Electron donating reactions
[Ni/Fe] hydrogenase, group 1, large subunit	Hydrogenases	Respiration	Electron donating reactions
[Ni/Fe] hydrogenase, group 1, small subunit	Hydrogenases	Respiration	Electron donating reactions
Fe-S-cluster-containing hydrogenase components 2	Hydrogenases	Respiration	Electron donating reactions
Coenzyme F420-reducing hydrogenase, beta subunit	Hydrogenases	Respiration	Electron donating reactions
Periplasmic [Fe] hydrogenase small subunit (EC 1.12.7.2)	Hydrogenases	Respiration	Electron donating reactions
Tetraheme cytochrome c isozyme 2	Hydrogenases	Respiration	Electron donating reactions
[Fe] hydrogenase gamma (EC 1.12.7.2)	Hydrogenases	Respiration	Electron donating reactions
heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta	Hydrogenases	Respiration	Electron donating reactions
NADP-reducing hydrogenase, subunit A	Hydrogenases	Respiration	Electron donating reactions
NADP-reducing hydrogenase, subunit B	Hydrogenases	Respiration	Electron donating reactions
NADP-reducing hydrogenase, subunit C	Hydrogenases	Respiration	Electron donating reactions
Coenzyme F420-reducing hydrogenase, alpha subunit	Hydrogenases	Respiration	Electron donating reactions
Coenzyme F420-reducing hydrogenase, gamma subunit	Hydrogenases	Respiration	Electron donating reactions
Ni,Fe-hydrogenase maturation factor	Hydrogenases	Respiration	Electron donating reactions
Signal transduction histidine kinase HoxJ (hydrogenase regulation)	Hydrogenases	Respiration	Electron donating reactions
Ni,Fe-hydrogenase III large subunit	Hydrogenases	Respiration	Electron donating reactions
hydrogenase, (NiFe)/(NiFeSe) small subunit family	Hydrogenases	Respiration	Electron donating reactions
hydrogenase/sulfur reductase, alpha subunit	Hydrogenases	Respiration	Electron donating reactions
hydrogenase/sulfur reductase, beta subunit	Hydrogenases	Respiration	Electron donating reactions
hydrogenase/sulfur reductase, delta subunit	Hydrogenases	Respiration	Electron donating reactions
hydrogenase/sulfur reductase, gamma subunit	Hydrogenases	Respiration	Electron donating reactions
Nickel-dependent hydrogenase, large subunit	Hydrogenases	Respiration	Electron donating reactions
Nickel-dependent hydrogenase, small subunit	Hydrogenases	Respiration	Electron donating reactions
Protein hydE	Hydrogenases	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase beta subunit (FruB) (EC 1.12.98.1)	Hydrogenases	Respiration	Electron donating reactions
Ni,Fe-hydrogenase I large subunit	Hydrogenases	Respiration	Electron donating reactions
Methanophenazine hydrogenase cytochrome b subunit (EC 1.12.98.3)	Hydrogenases	Respiration	Electron donating reactions
Methanophenazine hydrogenase large subunit (EC 1.12.98.3)	Hydrogenases	Respiration	Electron donating reactions
Methanophenazine hydrogenase maturation protease (EC 3.4.24.-)	Hydrogenases	Respiration	Electron donating reactions
Methanophenazine hydrogenase small subunit precursor (EC 1.12.98.3)	Hydrogenases	Respiration	Electron donating reactions
methyl viologen-reducing hydrogenase, delta subunit homolog FlpD	Hydrogenases	Respiration	Electron donating reactions
Ni,Fe-hydrogenase III small subunit	Hydrogenases	Respiration	Electron donating reactions
Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase	Hydrogenases	Respiration	Electron donating reactions
[Fe] hydrogenase, HymA subunit, putative	Hydrogenases	Respiration	Electron donating reactions
[Fe] hydrogenase, HymB subunit, putative	Hydrogenases	Respiration	Electron donating reactions
[Fe] hydrogenase, HymD subunit, putative	Hydrogenases	Respiration	Electron donating reactions
cytochrome-c3 hydrogenase alpha chain	Hydrogenases	Respiration	Electron donating reactions
cytochrome-c3 hydrogenase gamma chain	Hydrogenases	Respiration	Electron donating reactions
hydrogenase, methyl-violgen-reducing type, delta subunit	Hydrogenases	Respiration	Electron donating reactions
Probable Ni/Fe-hydrogenase 2 B-type cytochrome subunit	Hydrogenases	Respiration	Electron donating reactions
quinone-reactive Ni/Fe-hydrogenase, small subunit	Hydrogenases	Respiration	Electron donating reactions
cytochrome-c3 hydrogenase delta chain	Hydrogenases	Respiration	Electron donating reactions
hydrogenase (cytochrome-c3 hydrogenase beta chain)	Hydrogenases	Respiration	Electron donating reactions
HlyIIR binding site	Hemolysin_II_regulation	Experimental Subsystems	
Hemolysin II	Hemolysin_II_regulation	Experimental Subsystems	
Hemolysin II regulator HlyIIR, TetR family	Hemolysin_II_regulation	Experimental Subsystems	
Cytotoxin K	Hemolysin_II_regulation	Experimental Subsystems	
Potential response regulator for aerial mycelium production	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Pleiotropic negative regulator for morphological and physiological development in Streptomyces, BldD	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Adenylate cyclase (EC 4.6.1.1)	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
ATP-dependent Clp protease proteolytic subunit 1	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Putative ATP-dependent Clp protease	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
ATP-dependent Clp protease proteolytic subunit 2	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
ATP-dependent clp protease ATP-binding subunit ClpX	Differentiation_in_bacteria:transcription_factors_and_signaling_systems	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Aminobenzoyl-glutamate transport protein	p-Aminobenzoyl-Glutamate_Utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A	p-Aminobenzoyl-Glutamate_Utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit B	p-Aminobenzoyl-Glutamate_Utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Regulatory protein (induces abgABT, used to catabolize p-aminobenzoyl-glutamate)	p-Aminobenzoyl-Glutamate_Utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cytochrome cd1 nitrite reductase (EC:1.7.2.1)	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirD	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirG	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirL	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirH	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirJ	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme biosynthesis protein related to NirD	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme biosynthesis protein related to NirG	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme biosynthesis protein related to NirL	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme biosynthesis protein related to NirH	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM domain heme biosynthesis protein	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme biosynthesis protein related to NirD and NirG	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme biosynthesis protein related to NirL and NirH	Heme_biosynthesis_orphans	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
AttE component of AttEFGH ABC transport system	AttEFGH_ABC_Transport_System	Membrane Transport	ABC transporters
AttH component of AttEFGH ABC transport system	AttEFGH_ABC_Transport_System	Membrane Transport	ABC transporters
AttG component of AttEFGH ABC transport system	AttEFGH_ABC_Transport_System	Membrane Transport	ABC transporters
AttF component of AttEFGH ABC transport system	AttEFGH_ABC_Transport_System	Membrane Transport	ABC transporters
Uncharacterized protein MJ0068	Modificationexploration	Experimental Subsystems	
Uncharacterized protein MJ0273	Modificationexploration	Experimental Subsystems	
Uncharacterized protein MJ0274	Modificationexploration	Experimental Subsystems	
COG2047: Uncharacterized protein (ATP-grasp superfamily)	Modificationexploration	Experimental Subsystems	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Modificationexploration	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	Modificationexploration	Experimental Subsystems	
COG3269, Predicted RNA-binding protein, contains TRAM domain	Modificationexploration	Experimental Subsystems	
UPF0179 protein MJ1627	Modificationexploration	Experimental Subsystems	
Uncharacterized protein MJ0067	Modificationexploration	Experimental Subsystems	
TilS and TtcA-like	Modificationexploration	Experimental Subsystems	
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6)	Modificationexploration	Experimental Subsystems	
Uncharacterized protein MJ0919	Modificationexploration	Experimental Subsystems	
Origin of replication recognition protein	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Cell division control protein 6	DNA_replication,_archaeal	DNA Metabolism	DNA replication
DNA replication helicase protein MCM	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Replication factor A (ssDNA-binding protein)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
DNA primase small subunit (EC 2.7.7.-)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
DNA primase large subunit (EC 2.7.7.-)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Replication factor C large subunit	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Replication factor C small subunit	DNA_replication,_archaeal	DNA Metabolism	DNA replication
DNA polymerase sliding clamp protein PCNA	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Archaeal DNA polymerase I (EC 2.7.7.7)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Archaeal DNA polymerase II large subunit (EC 2.7.7.7)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Archaeal DNA polymerase II small subunit (EC 2.7.7.7)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Ribonuclease HII (EC 3.1.26.4)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
ATP-dependent DNA ligase (EC 6.5.1.1)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Flap structure-specific endonuclease (EC 3.-.-.-)	DNA_replication,_archaeal	DNA Metabolism	DNA replication
Cold shock protein CspB	CBSS-316056.14.peg.2759	Clustering-based subsystems	
FIG007785: exported protein	CBSS-316056.14.peg.2759	Clustering-based subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Gamma-glutamyl-GABA hydrolase	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Putrescine transport system permease protein PotH (TC 3.A.1.11.2)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Psp operon transcriptional activator	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Putrescine importer	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
Putrescine utilization regulator	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
GABA aminotransferase (EC 2.6.1.19)	GABA_and_putrescine_metabolism_from_cluters	Clustering-based subsystems	Putrescine/GABA utilization cluster-temporal,to add to SSs
TcuA: flavoprotein used to oxidize tricarballylate to cis-aconitate	Tricarballylate_Utilization	Carbohydrates	Organic acids
TcuB: works with TcuA to oxidize tricarballylate to cis-aconitate	Tricarballylate_Utilization	Carbohydrates	Organic acids
TcuC: integral membrane protein used to transport tricarballylate across the cell membrane	Tricarballylate_Utilization	Carbohydrates	Organic acids
TcuR: regulates tcuABC genes used in utilization of tricarballylate	Tricarballylate_Utilization	Carbohydrates	Organic acids
Putative tricarboxylic transport TctC	Tricarballylate_Utilization	Carbohydrates	Organic acids
Phage major capsid protein of Caudovirales	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage maturation protease	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, small subunit	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage portal (connector) protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage capsid and scaffold	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (lambda-like 5'-extended COS ends)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage internal (core) protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (T7-like direct terminal repeats)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage minor capsid protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head decoration protein (lambda gpD-like)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
DNA retention and portal binding (lambda gpW-like)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
DNA retention and tail attachment (lambda gpFII-like)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (3'-extended COS ends)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead assembly (scaffolding) protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (T4-like headful)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage major capsid protein of Caudovirales (T4-like gp23)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage capsid vertex protein (T4-like gp24)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head decoration protein (Hoc)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head decoration protein (Soc)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head completion protein (gp14)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head completion protein (gp4)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage fibritin (wac) protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head assembly chaperone protein (T4-like gp31)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head assembly chaperone protein (T4-like gp40)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead assembly (scaffolding) protein (T4-like gp21)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead assembly (scaffolding) protein (T4-like gp22)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead assembly (scaffolding) protein (T4-like gp68)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead assembly (scaffolding) protein (T4-like gp67)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Neck Protein (gp13)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Inh inhibitor of gp21 prohead protease	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (T4-like gp17)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, small subunit (T4-like gp16)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage portal (connector) protein (T4-like gp20)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (phi29-like gp16)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head assembly chaperone protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage major capsid protein of Caudovirales (HK97-like)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage (Mu-like) virion morphogenesis protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (Mu-like headful)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head completion protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead core protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage packaged DNA stabilization protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage capsid packaging protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage capsid scaffolding protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (P2-like 5'-extended COS ends)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
terminal protein (phi29-like gp3), terminase small subunit analog	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head decoration protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head decoration protein (phi29-like gp8.5 head fiber)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head completion protein (phi29 gp12-like)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead assembly (scaffolding) protein (phi29-like gp7)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head decoration protein (P22 Dec-like)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage capsid vertex assembly chaperone	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Unclassified maturation protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit (P22-like headful)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage minor virion protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage prohead protease protein (EC 3.4.-.-)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage portal (connector) protein (HK97-like)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage terminase, large subunit @ intein-containing	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head completion protein (T4-like gp14)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage head completion protein (T4-like gp13)	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Phage capsid vertex protein	Phage_head_and_packaging	Phages, Prophages, Transposable elements	Phages, Prophages
Cytochrome c551 NirM	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Cytochrome c55X precursor NirC	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Cytochrome cd1 nitrite reductase (EC:1.7.2.1)	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Heme d1 biosynthesis protein NirD	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Heme d1 biosynthesis protein NirF	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Heme d1 biosynthesis protein NirG	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Heme d1 biosynthesis protein NirH	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Heme d1 biosynthesis protein NirJ	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Heme d1 biosynthesis protein NirL	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Nitrite reductase associated c-type cytochorome NirN	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Dissimilatory_nitrite_reductase	Nitrogen Metabolism	
Phosphoglycolate phosphatase (EC 3.1.3.18)	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
Putative phosphatase YfbT	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
Putative phosphatase YqaB	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
Putative phosphatase YieH	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
2-deoxyglucose-6-phosphate hydrolase YniC	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase	2-phosphoglycolate_salvage	DNA Metabolism	DNA repair
FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	CBSS-267608.1.peg.2815	Clustering-based subsystems	
Prolyl-tRNA synthetase (EC 6.1.1.15)	CBSS-267608.1.peg.2815	Clustering-based subsystems	
Sulfate transporter, CysZ-type	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Ferredoxin--sulfite reductase, actinobacterial type (EC 1.8.7.1)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Ferredoxin-like protein involved in electron transfer	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
4Fe-4S ferredoxin, iron-sulfur binding	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate transport system permease protein CysW	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate transport system permease protein CysT	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate and thiosulfate binding protein CysP	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Adenylylsulfate kinase (EC 2.7.1.25)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Ferredoxin	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
ABC-type probable sulfate transporter, permease protein	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
ABC-type probable sulfate transporter, ATPase component	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
ABC-type probable sulfate transporter, periplasmic binding protein	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate permease, Pit-type	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate permease, Trk-type	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfate-binding protein Sbp	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Putative sulfate permease	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Oxidoreductase probably involved in sulfite reduction	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Conserved hypothetical protein probably involved in sulfate reduction	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Ferredoxin--sulfite reductase (EC 1.8.7.1)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Ferredoxin--sulfite reductase, bacillial type (EC 1.8.7.1)	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Conserved hypothetical protein probably involved in assimilatory sulfate reduction	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	Inorganic sulfur assimilation
Phage collar	Phage_neck_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage neck whiskers	Phage_neck_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage neck protein	Phage_neck_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage neck	Phage_neck_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Allophycocyanin alpha chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Allophycocyanin beta chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Allophycocyanin-B	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome core component	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome core-membrane linker polypeptide	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome small core linker polypeptide	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycocyanin alpha chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycocyanin beta chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome small rod capping linker polypeptide, phycocyanin-associated	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome rod linker polypeptide, phycocyanin-associated	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycocyanobilin lyase alpha subunit	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycocyanobilin lyase beta subunit	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycoerythrin alpha chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycoerythrin beta chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome phycoerythrin-associated linker polypeptide	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycoerythrin linker protein CpeS homolog	Phycobilisome	Photosynthesis	Light-harvesting complexes
CpeR homolog, phycoerythrin linker-proteins region	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycocyanin alpha phycocyanobilin lyase related protein NblB	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome rod-core linker polypeptide, phycocyanin-associated	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycoerythrocyanin alpha chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycoerythrocyanin beta chain	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome rod linker polypeptide, phycoerythrocyanin-associated	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycobilisome degradation protein NblA	Phycobilisome	Photosynthesis	Light-harvesting complexes
Phycoerythrin gamma chain linker polypeptide	Phycobilisome	Photosynthesis	Light-harvesting complexes
Thymidylate kinase (EC 2.7.4.9)	CBSS-393133.3.peg.2787	Clustering-based subsystems	
protein from nitrogen regulatory protein P-II (GLNB) family, ortholog YAAQ B. subtilis	CBSS-393133.3.peg.2787	Clustering-based subsystems	
LSU ribosomal protein L10p (P0)	LSU_ribosomal_proteins_cluster	Clustering-based subsystems	
LSU ribosomal protein L11p (L12e)	LSU_ribosomal_proteins_cluster	Clustering-based subsystems	
LSU ribosomal protein L1p (L10Ae)	LSU_ribosomal_proteins_cluster	Clustering-based subsystems	
LSU ribosomal protein L7/L12 (P1/P2)	LSU_ribosomal_proteins_cluster	Clustering-based subsystems	
Preprotein translocase subunit SecE (TC 3.A.5.1.1)	LSU_ribosomal_proteins_cluster	Clustering-based subsystems	
Transcription antitermination protein NusG	LSU_ribosomal_proteins_cluster	Clustering-based subsystems	
FIG009210: peptidase, M16 family	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
FIG001621: Zinc protease	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
Transcriptional regulator in cluster with unspecified monosaccharide ABC transport system	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
RecA protein	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100) in cluster with unspecified monosaccharide transporter	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
Unspecified monosaccharide ABC transport system, ATP-binding protein	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
Unspecified monosaccharide ABC transport system, permease component Ia (FIG025991)	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
Competence/damage-inducible protein CinA	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
FIG002344: Hydrolase (HAD superfamily)	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
FIG006542: Phosphoesterase	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
Unspecified monosaccharide ABC transport system, permease component 2	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
Unspecified monosaccharide ABC transport system, permease component I	CBSS-257314.1.peg.676	Clustering-based subsystems	Two related proteases
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)	Chlorobenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Catechol 1,2-dioxygenase (EC 1.13.11.1)	Chlorobenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-chlorobenzoate 1,2-dioxygenase reductase component	Chlorobenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-chlorobenzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.13)	Chlorobenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-chlorobenzoate 1,2-dioxygenase beta subunit (EC 1.14.12.13)	Chlorobenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Muconate cycloisomerase (EC 5.5.1.1)	Chlorobenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28)	Chlorobenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Tetrathionate reductase subunit A	Tetrathionate_respiration	Respiration	Electron accepting reactions
Tetrathionate reductase subunit B	Tetrathionate_respiration	Respiration	Electron accepting reactions
Tetrathionate reductase subunit C	Tetrathionate_respiration	Respiration	Electron accepting reactions
Octaheme tetrathionate reductase	Tetrathionate_respiration	Respiration	Electron accepting reactions
Tetrathionate reductase sensory transduction histidine kinase	Tetrathionate_respiration	Respiration	Electron accepting reactions
Tetrathionate reductase two-component response regulator	Tetrathionate_respiration	Respiration	Electron accepting reactions
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Amidophosphoribosyltransferase (EC 2.4.2.14)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Adenylosuccinate lyase (EC 4.3.2.2)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
IMP cyclohydrolase (EC 3.5.4.10)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
PurR: transcription regulator associated with purine metabolism	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
YabJ, a purine regulatory protein and member of the highly conserved YjgF family	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
IMP cyclohydrolase (EC 3.5.4.10) [alternate form]	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form]	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Possible subunit variant of phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form]	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Possible third subunit-variant of phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form]	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	Purines
Terminase small subunit [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Similar to terminase small subunit, yqaS homolog	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Terminase large subunit [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Terminase, large subunit [Bacteriophage PhiNIH1.1]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Portal protein [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Minor capsid protein [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Scaffolding protein [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Major capsid protein [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Lactobacillus delbrueckii phage mv4 main capsid protein Gp34 homolog lin2390	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp7 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp8 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp9 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp10 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp11 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Major tail shaft protein [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp13 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp14 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp15 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Tail tape-measure protein [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Putative tail or base plate protein gp17 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Putative tail or base plate protein gp18 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Putative tail or base plate protein gp19 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Putative long tail fibre [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Putative short tail fibre [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp22 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp23 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Holin [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Endolysin, L-alanyl-D-glutamate peptidase (EC 3.4.-.-) [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Integrase [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp33 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp34 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Repressor (CI-like) [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Repressor (cro-like) [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp37 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp40 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp41 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, Lin0079 homolog [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Antirepressor [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp43 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp44 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp45 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp47, recombination-related [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Recombinational DNA repair protein RecT (prophage associated)	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp49, replication initiation [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp32 [Listeria phage 2389]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp51 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp52 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp55 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp59 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Single-stranded DNA-binding protein (prophage associated)	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp66 [Bacteriophage A118], similar to Listeria protein LmaC	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, Lmo2305 homolog [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, Lmo2306 homolog [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, Lmo2307 homolog [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, Lmo2313 homolog [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, Lmo2276 homolog	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp28 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp29 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp68 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp35 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp38 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp61 [Bacteriophage A118], similar to Listeria protein LmaD	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp63 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp30 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Protein gp65 [Bacteriophage A118]	Listeria_phi-A118-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Type cbb3 cytochrome oxidase biogenesis protein CcoH	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Type cbb3 cytochrome oxidase biogenesis protein CcoI	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Putative analog of CcoH, COG3198	Biogenesis_of_cbb3-type_cytochrome_c_oxidases	Respiration	
Flagella-related protein FlaH	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagella-related protein FlaI	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagella-related protein FlaJ	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin FlaB1	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin FlaB2	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagella-related protein FlaC	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagella-related protein FlaE	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagella-related protein FlaF	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagella-related protein FlaG	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin FlaA1	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin FlaA2	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin FlaB3	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagella-related protein FlaD	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin FlaB	Archaeal_Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
2-dehydropantoate 2-reductase (EC 1.1.1.169)	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Penicillin-binding protein 2 (PBP-2)	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
rRNA small subunit methyltransferase H	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
rRNA small subunit methyltransferase I	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
BH2577 unknown conserved protein in B. subtilis	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Cell division protein FtsL	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Cell division protein MraZ	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Penicillin-binding protein 2B	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Stage V sporulation protein D (Sporulation-specific penicillin-binding protein)	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
putative patatin-like phospholipase	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Uncharacterized N-acetyltransferase BT9727_3663 (EC 2.3.1.-)	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
Penicillin-binding protein 3	16S_rRNA_modification_within_P_site_of_ribosome	RNA Metabolism	RNA processing and modification
FIG032248: hypothetical protein	CBSS-336982.3.peg.219	Clustering-based subsystems	
FIG033897: hypothetical protein	CBSS-336982.3.peg.219	Clustering-based subsystems	
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	CBSS-336982.3.peg.219	Clustering-based subsystems	
Cytoplasmic membrane protein FsxA	Lipid-linked_oligosaccharide_synthesis_related_cluster	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster	Lipid-linked_oligosaccharide_synthesis_related_cluster	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster	Lipid-linked_oligosaccharide_synthesis_related_cluster	Cell Wall and Capsule	Capsular and extracellular polysacchrides
FIG00820327: hypothetical protein	Lipid-linked_oligosaccharide_synthesis_related_cluster	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Apolipoprotein N-acyltransferase (EC 2.3.1.-) in lipid-linked oligosaccharide synthesis cluster	Lipid-linked_oligosaccharide_synthesis_related_cluster	Cell Wall and Capsule	Capsular and extracellular polysacchrides
O-succinylbenzoate synthase (EC 4.2.1.113)	Muconate_lactonizing_enzyme_family	Miscellaneous	
L-alanine-DL-glutamate epimerase	Muconate_lactonizing_enzyme_family	Miscellaneous	
Muconate cycloisomerase (EC 5.5.1.1)	Muconate_lactonizing_enzyme_family	Miscellaneous	
N-acylamino acid racemase	Muconate_lactonizing_enzyme_family	Miscellaneous	
N-succinyl arginine/lysine racemase	Muconate_lactonizing_enzyme_family	Miscellaneous	
Nicotinamidase (EC 3.5.1.19)	Choline_transport_and_metabolism	Experimental Subsystems	
Choline kinase (EC 2.7.1.32)	Choline_transport_and_metabolism	Experimental Subsystems	
Choline permease LicB	Choline_transport_and_metabolism	Experimental Subsystems	
Choline dehydrogenase (EC 1.1.99.1)	Choline_transport_and_metabolism	Experimental Subsystems	
High-affinity choline uptake protein BetT	Choline_transport_and_metabolism	Experimental Subsystems	
Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Choline_transport_and_metabolism	Experimental Subsystems	
Glycine betaine transporter OpuD	Choline_transport_and_metabolism	Experimental Subsystems	
Niacin transporter NiaP	Choline_transport_and_metabolism	Experimental Subsystems	
Sarcosine oxidase alpha subunit (EC 1.5.3.1)	Choline_transport_and_metabolism	Experimental Subsystems	
Sarcosine oxidase gamma subunit (EC 1.5.3.1)	Choline_transport_and_metabolism	Experimental Subsystems	
Sarcosine oxidase beta subunit (EC 1.5.3.1)	Choline_transport_and_metabolism	Experimental Subsystems	
Sarcosine oxidase delta subunit (EC 1.5.3.1)	Choline_transport_and_metabolism	Experimental Subsystems	
GbcA Glycine betaine demethylase subunit A	Choline_transport_and_metabolism	Experimental Subsystems	
GbcB Glycine betaine demethylase subunit B	Choline_transport_and_metabolism	Experimental Subsystems	
DgcA Dimethylglycine demethylase subunit A	Choline_transport_and_metabolism	Experimental Subsystems	
DgcB Dimethylglycine demethylase subunit B	Choline_transport_and_metabolism	Experimental Subsystems	
Urea carboxylase-related amino acid permease	Choline_transport_and_metabolism	Experimental Subsystems	
Sarcosine dehydrogenase (EC 1.5.99.1)	Choline_transport_and_metabolism	Experimental Subsystems	
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)	Choline_transport_and_metabolism	Experimental Subsystems	
Putative Dimethylglycine oxidase	Choline_transport_and_metabolism	Experimental Subsystems	
BAT1-like	Choline_transport_and_metabolism	Experimental Subsystems	
GbcA family protein, putative N1-methylnicotinamide or trigonelline demethylase	Choline_transport_and_metabolism	Experimental Subsystems	
GbcB family protein	Choline_transport_and_metabolism	Experimental Subsystems	
BAT1 Bidirectional amino acid transporter	Choline_transport_and_metabolism	Experimental Subsystems	
Surface presentation of antigens protein SpaP	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaQ	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion chaperone protein for YopD (SycD)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion chaperone protein for YopT (SycT)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion cytoplasmic LcrG inhibitor (LcrV,secretion and targeting control protein, V antigen)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion cytoplasmic plug protein (LcrG)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion host injection and negative regulator protein (YopD)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion host injection protein (YopB)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion injected virulence protein (EC 3.4.22.-,YopT,cysteine protease,depolymerizes actin filaments of cytoskeleton,causes cytotoxicity)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion injected virulence protein (YopP,YopJ, induces apoptosis, prevents cytokine induction, inhibits NFkb activation)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscS,homologous to flagellar export components)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion low calcium response protein (LcrR)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion negative modulator of injection (YopK,YopQ,controls size of translocator pore)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion outermembrane contact sensing protein( yopN,Yop4b,LcrE)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion outermembrane negative regulator of secretion (TyeA)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion possible injected virulence protein (YopM)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion protein (YscP)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion spans bacterial envelope protein (YscO)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion transporter lipoprotein (YscW,VirG)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
hypothetical protein pYVe8081_p05	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion protein SycN	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion protein YscX	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
required for Yop secretion	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Unknown, probably involved in type III secretion	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion system EscC protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion system lipoprotein precursor EprK	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Cell invasion protein SipD (Salmonella invasion protein D)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Invasion protein IagB precursor	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Invasion protein InvA	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Invasion protein invH precursor	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Oxygen-regulated invasion protein OrgA	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Probable ATP synthase SpaL (EC 3.6.3.14) (Invasion protein InvC)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaM	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaN (Invasion protein InvJ)	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaO	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
cell invasion protein SipB	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Oxygen-regulated invasion protein OrgB	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein SctL	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein SctS	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion system protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion system protein BsaR	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HpaA protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HpaP protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HrcQ protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HrpB1 protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HrpB2 protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HrpB4 protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HrpD5 protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HrpD6 protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
HrpF protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III effector	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
MxiG protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
MxiK protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaN	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
MxiN	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
MxiH protein	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Type III secretion protein EprH	Type_III_secretion_systems,_extended	Clustering-based subsystems	Type III secretion system, extended
Exopolysaccharide biosynthesis glycosyltransferase EpsF (EC 2.4.1.-)	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Exopolysaccharide biosynthesis transcriptional activator EpsA	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Tyrosine-protein kinase EpsD (EC 2.7.10.2)	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Tyrosine-protein kinase transmembrane modulator EpsC	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glycosyl transferase, group 1 family protein	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Manganese-dependent protein-tyrosine phosphatase (EC 3.1.3.48)	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Conserved domain protein in cluster with two glycosyl transferases	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glycosyl transferase, group 2 family protein	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Lipopolysaccharide cholinephosphotransferase LicD3 (EC 2.7.8.-)	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative uncharacterized protein in cluster with two glycosyl transferases	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsA, sugar transferase	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsB	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsC, polysaccharide export	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsE	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsH	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Exopolysaccharide biosynthesis transcription antiterminator, LytR family	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
D-beta-hydroxybutyrate permease	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Enoyl-CoA hydratase (EC 4.2.1.17)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Poly(3-hydroxyalkanoate) depolymerase	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Polyhydroxyalkanoate granule-associated protein PhaF	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Polyhydroxyalkanoic acid synthase	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Short chain fatty acids transporter	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
polyhydroxyalkanoate granule-associated protein PhaI	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
PhbF	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
phaP protein	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
polyhydroxyalkanoate synthesis repressor PhaR	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Intracellular PHB depolymerase (EC 3.1.1.-)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Putative 3-hydroxyacyl-coa dehydrogenase	Polyhydroxybutyrate_metabolism	Fatty Acids, Lipids, and Isoprenoids	
Nicotinate hydroxylase alpha subunit (EC 1.17.1.5)	Nicotinamide_catabolism	Experimental Subsystems	NAD and NADP
Nicotinate hydroxylase beta subunit (EC 1.17.1.5)	Nicotinamide_catabolism	Experimental Subsystems	NAD and NADP
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
Fe-S OXIDOREDUCTASE (1.8.-.-) Wyeosine biosynthesis	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
Thioredoxin reductase (EC 1.8.1.9)	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
tRNA methylase YGL050w homolog Wyeosine biosynthesis	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
tRNA methylase Trm12p Wyeosine biosynthesis	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
Uncharacterized protein conserved in archaea (DUF531)	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
Hypothetical ATP-binding protein, containing DUF265 domain	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
PAB2272 methyltransferase homolog	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
Iron-sulfur cluster assembly scaffold protein IscU	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
tRNA methylase YGL050w homolog Wyeosine biosynthesis type 2	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
tRNA methylase Yol141w homolog Wyeosine biosynthesis	Wyeosine-MimG_Biosynthesis	RNA Metabolism	RNA processing and modification
Methanol dehydrogenase large subunit protein (EC 1.1.99.8)	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
Cytochrome c-L precursor (Cytochrome c551I) (Cytochrome c552)	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaJ, protein involved in methanol oxidation	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaS, protein involved in methanol oxidation	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
Methanol dehydrogenase, small subunit (EC 1.1.99.8)	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaD protein	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
Methanol dehydrogenase regulatory protein MoxR	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaL protein	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
Methanol utilization control regulatory protein MoxX	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
Methanol utilization control sensor protein MoxY (EC 2.7.3.-)	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaC, protein involved in Ca2+ insertion into methanol dehydrogenase	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaK protein	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaA protein	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
MxaH	CBSS-316056.14.peg.1887	Clustering-based subsystems	Methanol oxidation
[NiFe] hydrogenase nickel incorporation protein HybF	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase nickel incorporation-associated protein HypB	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase metallocenter assembly protein HybG	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase metallocenter assembly protein HypD	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase metallocenter assembly protein HypE	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase metallocenter assembly protein HypF	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase nickel incorporation protein HypA	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase metallocenter assembly protein HypC	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
Methanophenazine hydrogenase large subunit (EC 1.12.98.3)	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
Energy-conserving hydrogenase (ferredoxin), subunit A	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase alpha subunit (FruA) (EC 1.12.98.1)	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase alpha subunit (FrcA) (EC 1.12.98.1)	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
[NiFe] hydrogenase nickel incorporation HybF-like protein	NiFe_hydrogenase_maturation	Respiration	Electron donating reactions
Methenyltetrahydrofolate cyclohydrolase	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Methylenetetrahydrofolate dehydrogenase	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
5,10-Methylenetetrahydrofolate reductase (EC 1.7.99.5)	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Corrinoid iron-sulfur protein (small subunit)	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Corrinoid iron-sulfur protein (large subunit)	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Acetyl-CoA synthase	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Carbon monoxide dehydrogenase	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Phosphate acetyltransferase (EC 2.3.1.8)	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Acetate kinase (EC 2.7.2.1)	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Formate dehydrogenase beta subunit (EC 1.2.1.43)	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Formate-tetrahydrofolate ligase (EC 6.3.4.3)	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
5-methyltetrahydrofolate corrinoid iron sulfur protein methyltransferase	Acetyl-CoA_pathway_of_CO2_fixation	Carbohydrates	CO2 fixation
Ketoisovalerate oxidoreductase subunit VorA (EC 1.2.7.7)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Ketoisovalerate oxidoreductase subunit VorB (EC 1.2.7.7)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Ketoisovalerate oxidoreductase subunit VorC (EC 1.2.7.7)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Ketoisovalerate oxidoreductase subunit (EC 1.2.7.7)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Pyruvate:ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.1)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Transcriptional regulator, Hth-3 family	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
conserved protein associated with acetyl-CoA C-acyltransferase	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Ketoisovalerate oxidoreductase subunit VorD (EC 1.2.7.7)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
nonspecific lipid-transfer protein (acethyl CoA synthetase)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Ketoisovalerate oxidoreductase subunit VorG (EC 1.2.7.7)	Ketoisovalerate_oxidoreductase	Amino Acids and Derivatives	Branched-chain amino acids
Signal transduction protein TRAP (Target of RNAIII-activating protein)	Accessory_Gene_Regulator	Experimental Subsystems	
Accessory gene regulator B	Accessory_Gene_Regulator	Experimental Subsystems	
Accessory gene regulator D (pheromone precursor, type III)	Accessory_Gene_Regulator	Experimental Subsystems	
Accessory gene regulator C (sensor histidine kinase)	Accessory_Gene_Regulator	Experimental Subsystems	
Accessory gene regulator A (response regulator)	Accessory_Gene_Regulator	Experimental Subsystems	
Transcriptional regulator MgrA (Regulator of autolytic activity)	Accessory_Gene_Regulator	Experimental Subsystems	
Response regulator SaeR (Staphylococcus exoprotein expression protein R)	Accessory_Gene_Regulator	Experimental Subsystems	
Sensor histidine protein kinase SaeS (EC 2.7.13.3) (exoprotein expression protein S)	Accessory_Gene_Regulator	Experimental Subsystems	
CsbB stress response protein	Accessory_Gene_Regulator	Experimental Subsystems	
Transcriptional regulator SarZ (Staphylococcal accessory regulator Z)	Accessory_Gene_Regulator	Experimental Subsystems	
Protein msa (Modulator of sarA)	Accessory_Gene_Regulator	Experimental Subsystems	
Major cold shock protein CspA	Accessory_Gene_Regulator	Experimental Subsystems	
Two component system histidine kinase ArlS (EC 2.7.3.-)	Accessory_Gene_Regulator	Experimental Subsystems	
Putative response regulator ArlR	Accessory_Gene_Regulator	Experimental Subsystems	
Transcriptional regulator SarV (Staphylococcal accessory regulator V)	Accessory_Gene_Regulator	Experimental Subsystems	
Staphylococcal respiratory response protein SrrA	Accessory_Gene_Regulator	Experimental Subsystems	
Staphylococcal respiratory response protein SrrB	Accessory_Gene_Regulator	Experimental Subsystems	
Sensor histidine kinase VraS	Accessory_Gene_Regulator	Experimental Subsystems	
Two component transcriptional regulator VraR	Accessory_Gene_Regulator	Experimental Subsystems	
Ferric uptake regulation protein FUR	Accessory_Gene_Regulator	Experimental Subsystems	
Zinc uptake regulation protein ZUR	Accessory_Gene_Regulator	Experimental Subsystems	
Peroxide stress regulator PerR, FUR family	Accessory_Gene_Regulator	Experimental Subsystems	
Transcriptional regulator SarR (Staphylococcal accessory regulator R)	Accessory_Gene_Regulator	Experimental Subsystems	
RNAIII (delta-hemolysin)	Accessory_Gene_Regulator	Experimental Subsystems	
Transcriptional regulator SarU (Staphylococcal accessory regulator U)	Accessory_Gene_Regulator	Experimental Subsystems	
Transcriptional regulator SarT (Staphylococcal accessory regulator T)	Accessory_Gene_Regulator	Experimental Subsystems	
Accessory gene regulator D (pheromone precursor, type II)	Accessory_Gene_Regulator	Experimental Subsystems	
Carbon starvation protein A	Carbon_Starvation	Stress Response	
Carbon storage regulator	Carbon_Starvation	Stress Response	
Starvation sensing protein RspA	Carbon_Starvation	Stress Response	
Starvation sensing protein RspB	Carbon_Starvation	Stress Response	
Carbon starvation protein A paralog	Carbon_Starvation	Stress Response	
Starvation lipoprotein Slp paralog	Carbon_Starvation	Stress Response	
Stringent starvation protein A	Carbon_Starvation	Stress Response	
Stringent starvation protein B	Carbon_Starvation	Stress Response	
Starvation lipoprotein Slp	Carbon_Starvation	Stress Response	
FIG048626: Hypothetical protein	CBSS-316273.3.peg.448	Clustering-based subsystems	
FIG045085: Hypothetical protein	CBSS-316273.3.peg.448	Clustering-based subsystems	
FIG042594: DUF1550 domain-containing protein	CBSS-316273.3.peg.448	Clustering-based subsystems	
FIG037995: Hypothetical protein	CBSS-316273.3.peg.448	Clustering-based subsystems	
FIG017823: ATPase, MoxR family	CBSS-316273.3.peg.448	Clustering-based subsystems	
FIG033680: Hypothetical protein	CBSS-316273.3.peg.448	Clustering-based subsystems	
TldE/PmbA family protein, Actinobacterial subgroup	CBSS-316273.3.peg.448	Clustering-based subsystems	
TldD family protein, Actinobacterial subgroup	CBSS-316273.3.peg.448	Clustering-based subsystems	
Glyoxylate carboligase (EC 4.1.1.47)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
Hydroxypyruvate isomerase (EC 5.3.1.22)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
Hydroxypyruvate reductase (EC 1.1.1.81)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
Tartrate decarboxylase (EC 4.1.1.73)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
D-glycerate 2-kinase (EC 2.7.1.-)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
Pyruvate kinase (EC 2.7.1.40)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
Glycerate kinase (EC 2.7.1.31)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
D-glycerate transporter (predicted)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
D-glycerate 3-kinase (EC 2.7.1.31), plant type	Glyoxylate-Hydroxypyruvate_Conversion	Experimental Subsystems	
FIG016157: Similar to nicotianamine synthase	CBSS-208964.1.peg.4832	Clustering-based subsystems	
FIG016473: Diaminopimelate epimerase homolog	CBSS-208964.1.peg.4832	Clustering-based subsystems	
FIG018700: hypothetical protein	CBSS-208964.1.peg.4832	Clustering-based subsystems	
FIG028883: Permeases of the drug/metabolite transporter (DMT) superfamily	CBSS-208964.1.peg.4832	Clustering-based subsystems	
ABC transporter in pyoverdin gene cluster, ATP-binding component	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
ABC transporter in pyoverdin gene cluster, periplasmic component	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
ABC transporter in pyoverdin gene cluster, permease component	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Cation ABC transporter, periplasmic cation-binding protein, PA2407 homolog	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Hypothetical MbtH-like protein, PA2412 homolog	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Hypothetical protein in pyoverdin gene cluster, PA2405 homolog	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Hypothetical protein in pyoverdin gene cluster, PA2406 homolog	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Non-ribosomal peptide synthetase modules, pyoverdine	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Outer membrane ferripyoverdine receptor	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Outer membrane ferripyoverdine receptor FpvA, TonB-dependent	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Outer membrane pyoverdine eflux protein	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Putative dipeptidase, pyoverdin biosynthesis PvdM	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Putative iron-regulated membrane protein, PA2403 homolog	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Putative thiamine pyrophosphate-requiring enzyme, PA2404 homolog	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
PvdE, pyoverdine ABC export system, fused ATPase and permease components	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV)	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76)	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdine biosynthesis related protein PvdP	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdine chromophore precursor synthetase PvdL	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdine efflux carrier and ATP binding protein	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdine sidechain non-ribosomal peptide synthetase PvdD	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdine sidechain non-ribosomal peptide synthetase PvdI	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdine sidechain non-ribosomal peptide synthetase PvdJ	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Sigma factor PvdS, controling pyoverdin biosynthesis	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Thioesterase PvdG involved in non-ribosomal peptide biosynthesis	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
pyoverdine-specific efflux macA-like protein	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Hypothetical protein PvdY	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Probable thioesterase involved in non-ribosomal peptide biosynthesis, PA2411 homolog	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pyoverdine synthetase PvdF, N5-hydroxyornithine formyltransferase	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Antisigma transmembrane sensor FpvR	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Hypothetical protein PvdX	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Hypothetical protein in pyoverdin gene cluster	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Outer membrane ferripyoverdine receptor FpvB, for Type I pyoverdine	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Outer membrane porin, coexpressed with pyoverdine biosynthesis regulon	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Pirin-related protein, coexpressed with pyoverdine biosynthesis regulon	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Probable hydrolase, coexpressed with pyoverdine biosynthesis regulon	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
Non-ribosomal peptide synthetase modules, pyoverdine??	Siderophore_Pyoverdine	Iron acquisition and metabolism	Siderophores
FIG146518: Zn-dependent hydrolases, including glyoxylases	CBSS-269482.4.peg.5018	Clustering-based subsystems	
FIG003847: Oxidoreductase (flavoprotein)	CBSS-269482.4.peg.5018	Clustering-based subsystems	
Hypothetical protein DUF194, DegV family	CBSS-370552.3.peg.1240	Clustering-based subsystems	
FIG006988: Lipase/Acylhydrolase with GDSL-like motif	CBSS-370552.3.peg.1240	Clustering-based subsystems	
YfaA	CBSS-370552.3.peg.1240	Clustering-based subsystems	
L,D-transpeptidase YcbB	CBSS-228400.4.peg.1623	Clustering-based subsystems	
FIG001587: exported protein	CBSS-228400.4.peg.1623	Clustering-based subsystems	
Hypothetical metal-binding enzyme, YcbL homolog	CBSS-228400.4.peg.1623	Clustering-based subsystems	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Xylulose kinase (EC 2.7.1.17)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Fructokinase (EC 2.7.1.4)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Oxidoreductase, short chain dehydrogenase/reductase family	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Sorbitol operon transcription regulator	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Multiple polyol-specific dehydrogenase (EC 1.1.1.-)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Xylitol dehydrogenase (EC 1.1.1.9)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Various polyols ABC transporter, periplasmic substrate-binding protein	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Various polyols ABC transporter, permease component 1	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Various polyols ABC transporter, permease component 2	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Various polyols ABC transporter, ATP-binding component	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Sorbitol dehydrogenase (EC 1.1.1.14)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Transcriptional regulator of various polyols utilization, AraC family	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
D-arabinitol 4-dehydrogenase (EC 1.1.1.11)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
D-ribulokinase (EC 2.7.1.47)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Ribitol/Xylitol/Arabitol transporter, MFS superfamily	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Transcriptional regulator of xylitol utilization, LacI family	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Xylitol ABC transporter, periplasmic substrate-binding protein	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Xylitol ABC transporter, permease component	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Xylitol ABC transporter, ATP-binding component	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Ribitol operon repressor	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Ribitol 2-dehydrogenase (EC 1.1.1.56)	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
6-phosphofructokinase (EC 2.7.1.11), PF08013 family	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Transcriptional regulator of mannitol utilization, DeoR family protein	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Predicted mannitol permease	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Thermostable mannitol dehydrogenase	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
Glucitol/sorbitol-specific transport protein GutA	Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization	Carbohydrates	Sugar alcohols
BH1670 unknown conserved protein in B. subtilis	CBSS-393130.3.peg.129	Clustering-based subsystems	Related to Menaquinone-cytochrome C reductase 
Hypothetical transmembrane protein CDS_ID OB1773	CBSS-393130.3.peg.129	Clustering-based subsystems	Related to Menaquinone-cytochrome C reductase 
Menaquinone-cytochrome C reductase iron-sulfur subunit	CBSS-393130.3.peg.129	Clustering-based subsystems	Related to Menaquinone-cytochrome C reductase 
Menaquinone-cytochrome c reductase, cytochrome B subunit	CBSS-393130.3.peg.129	Clustering-based subsystems	Related to Menaquinone-cytochrome C reductase 
TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase	CBSS-393130.3.peg.129	Clustering-based subsystems	Related to Menaquinone-cytochrome C reductase 
S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2-binding periplasmic protein LuxP precursor	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 sensor kinase/phosphatase LuxQ (EC 2.7.3.-) (EC 3.1.3.-)	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
Phosphorelay protein LuxU	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
Regulatory protein LuxO	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
Quorum-sensing regulator of virulence HapR	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
8-amino-7-oxononanoate synthase (EC 2.3.1.47) / CqsA	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
Sensor histidine kinase CqsS	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 1 sensor kinase/phosphatase LuxN (EC 2.7.3.-) (EC 3.1.3.-)	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-(3-hydroxybutanoyl)-L- homoserine lactone synthase LuxM	Quorum-sensing_in_Vibrio	Regulation and Cell signaling	Quorum sensing and biofilm formation
L-aspartate oxidase (EC 1.4.3.16)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate synthetase (EC 2.5.1.72)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD synthetase (EC 6.3.1.5)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamidase (EC 3.5.1.19)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Niacin transporter NiaP	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Transcriptional repressor for NAD biosynthesis in gram-positives	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Core component Spy1425 of predicted NAD-regulated ECF transporter for niacin	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nudix-related transcriptional regulator NrtR	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosyl nicotinamide transporter, PnuC-like	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NadR transcriptional regulator	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Hypothetical Nudix-like regulator	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Predicted nicotinate-regulated transporter BH3254	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Predicted NAD regulator in Alphaproteobacteria	NAD_regulation	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Extracellular Matrix protein PelA	Extracellular_matrix_proteins_(PEL)_involved_in_glucose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelB	Extracellular_matrix_proteins_(PEL)_involved_in_glucose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelC	Extracellular_matrix_proteins_(PEL)_involved_in_glucose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelD	Extracellular_matrix_proteins_(PEL)_involved_in_glucose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelE	Extracellular_matrix_proteins_(PEL)_involved_in_glucose-rich_biofilm_formation_in_Pseudomonas		
Extracellular matrix protein PelF, glycosyltransferase, group 1	Extracellular_matrix_proteins_(PEL)_involved_in_glucose-rich_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelG	Extracellular_matrix_proteins_(PEL)_involved_in_glucose-rich_biofilm_formation_in_Pseudomonas		
3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-)	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetaldehyde dehydrogenase (EC 1.2.1.39)	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17)	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate degradation enoyl-CoA hydratase PaaB (EC 4.2.1.17)	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate-CoA oxygenase, PaaG subunit	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate-CoA oxygenase, PaaH subunit	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate-CoA oxygenase, PaaI subunit	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate-CoA oxygenase, PaaJ subunit	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate-CoA oxygenase/reductase, PaaK subunit	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetate-coenzyme A ligase (EC 6.2.1.30) PaaF	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetic acid degradation operon negative regulatory protein PaaX	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetic acid degradation protein PaaD, thioesterase	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetic acid degradation protein PaaE, ketothiolase	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetic acid degradation protein PaaY	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Acetate permease ActP (cation/acetate symporter) PaaL	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetic acid-specific porin PaaM	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Putative membrane protein, clustering with ActP PaaL	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Phenylacetic acid degradation protein PaaN2, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)	Phenylacetyl-CoA_catabolic_pathway_(core)	Metabolism of Aromatic Compounds	
Acetylaminoadipate kinase (EC 2.7.2.-)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoaconitase large subunit (EC 4.2.1.36)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoaconitase small subunit (EC 4.2.1.36)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homocitrate synthase (EC 2.3.3.14)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoisocitrate dehydrogenase (EC 1.1.1.87)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine biosynthesis protein LysX	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-gamma-aminoadipyl-phosphate reductase (EC 1.2.1.-)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-lysine aminotransferase (EC 2.6.1.-)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-lysine deacetylase (EC 3.5.1.-)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Alpha-aminoadipate aminotransferase (EC 2.6.1.39)	Lysine_biosynthesis_AAA_pathway_2	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteinyl-tRNA synthetase related protein	CBSS-261594.1.peg.788	Clustering-based subsystems	recX and regulatory cluster
A/G-specific adenine glycosylase (EC 3.2.2.-)	CBSS-261594.1.peg.788	Clustering-based subsystems	recX and regulatory cluster
Cell division inhibitor	CBSS-261594.1.peg.788	Clustering-based subsystems	recX and regulatory cluster
Transcription regulator CDS_ID OB0894	CBSS-261594.1.peg.788	Clustering-based subsystems	recX and regulatory cluster
Regulatory protein RecX	CBSS-261594.1.peg.788	Clustering-based subsystems	recX and regulatory cluster
Copper sensory histidine kinase CpxA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Copper-sensing two-component system response regulator CpxR	Orphan_regulatory_proteins	Regulation and Cell signaling	
DNA transformation protein TfoX	Orphan_regulatory_proteins	Regulation and Cell signaling	
Glycine cleavage system transcriptional activator GcvA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Glycine cleavage system transcriptional antiactivator GcvR	Orphan_regulatory_proteins	Regulation and Cell signaling	
Putative sensor-like histidine kinase YfhK	Orphan_regulatory_proteins	Regulation and Cell signaling	
Putative sensory histidine kinase YfhA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Putative two-component response regulator and GGDEF family protein YeaJ	Orphan_regulatory_proteins	Regulation and Cell signaling	
Sensor kinase CitA, DpiB (EC 2.7.3.-)	Orphan_regulatory_proteins	Regulation and Cell signaling	
Sensor protein basS/pmrB (EC 2.7.3.-)	Orphan_regulatory_proteins	Regulation and Cell signaling	
Sensory histidine kinase QseC	Orphan_regulatory_proteins	Regulation and Cell signaling	
Sensory histidine kinase in two-component regulatory system with RstA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Transcriptional regulatory protein CitB, DpiA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Transcriptional regulatory protein RstA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Transcriptional regulatory protein basR/pmrA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Two-component system response regulator QseB	Orphan_regulatory_proteins	Regulation and Cell signaling	
Copper sensory histidine kinase CusS	Orphan_regulatory_proteins	Regulation and Cell signaling	
Copper-sensing two-component system response regulator CusR	Orphan_regulatory_proteins	Regulation and Cell signaling	
Glycine cleavage system transcriptional activator	Orphan_regulatory_proteins	Regulation and Cell signaling	
Hybrid sensory histidine kinase in two-component regulatory system with EvgA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Putative two component system histidine kinase YedV	Orphan_regulatory_proteins	Regulation and Cell signaling	
Putative two-component system response regulator YedW	Orphan_regulatory_proteins	Regulation and Cell signaling	
Acetoacetate metabolism regulatory protein AtoC	Orphan_regulatory_proteins	Regulation and Cell signaling	
Positive transcription regulator EvgA	Orphan_regulatory_proteins	Regulation and Cell signaling	
Sensory histidine kinase AtoS	Orphan_regulatory_proteins	Regulation and Cell signaling	
Two-component oxygen-sensor histidine kinase FixL	Orphan_regulatory_proteins	Regulation and Cell signaling	
Two-component nitrogen fixation transcriptional regulator FixJ	Orphan_regulatory_proteins	Regulation and Cell signaling	
Two-component sensor histidine kinase PleC	Orphan_regulatory_proteins	Regulation and Cell signaling	
Two-component system response regulator CreC	Orphan_regulatory_proteins	Regulation and Cell signaling	
Sensory histidine kinase CreB	Orphan_regulatory_proteins	Regulation and Cell signaling	
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	CBSS-266117.6.peg.2476	Clustering-based subsystems	
Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)	CBSS-266117.6.peg.2476	Clustering-based subsystems	
Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)	CBSS-266117.6.peg.2476	Clustering-based subsystems	
Regulator of polyketide synthase expression	CBSS-266117.6.peg.2476	Clustering-based subsystems	
Xanthine/uracil/thiamine/ascorbate permease family protein	CBSS-266117.6.peg.2476	Clustering-based subsystems	
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family	CBSS-266117.6.peg.2476	Clustering-based subsystems	
hypothetical protein SC6C5.04c	CBSS-266117.6.peg.2476	Clustering-based subsystems	
Guanine deaminase (EC 3.5.4.3)	CBSS-266117.6.peg.2476	Clustering-based subsystems	
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit I	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit II	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IIII	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IV	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Transport ATP-binding protein CydC	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Transport ATP-binding protein CydD	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
putative Cytochrome bd2, subunit I	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
putative Cytochrome bd2, subunit II	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Transport ATP-binding protein CydCD	Cytochrome_c_oxidases_d@O_copy	Respiration	Electron accepting reactions
Immunogenic secreted protein	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
C5a peptidase (EC 3.4.21.-)	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
Two-component system response regulator	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
Two-component system histidine kinase	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
M protein trans-acting positive regulator (Mga)	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
Mga-associated protein	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
Hypothetical mga-associated protein	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
Antiphagocytic M protein	Streptococcal_Mga_Regulon	Regulation and Cell signaling	Regulation of virulence
Membrane protein YciC, linked to IspA	Intracellular_septation_in_Enterobacteria	Cell Division and Cell Cycle	
Intracellular septation protein IspA	Intracellular_septation_in_Enterobacteria	Cell Division and Cell Cycle	
Acyl-CoA thioesterase YciA, involved in membrane biogenesis	Intracellular_septation_in_Enterobacteria	Cell Division and Cell Cycle	
Translation initiation factor 3	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)	Virulence	
LSU ribosomal protein L35p	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)	Virulence	
LSU ribosomal protein L20p	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)	Virulence	
Methionine transporter MetT	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine gamma-lyase (EC 4.4.1.11)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylmethionine synthetase (EC 2.5.1.6)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-ribosylhomocysteine lyase (EC 4.4.1.21)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter ATP-binding protein	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter permease protein	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter substrate-binding protein	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2-Oxobutyrate oxidase, putative	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-synthase (EC 4.2.1.22)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-lyase (EC 4.4.1.1)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Adenosylhomocysteinase (EC 3.3.1.1)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2-Oxobutyrate dehydrogenase E1 (EC:1.2.4.1)	Methionine_Degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Chorismate mutase I (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Prephenate dehydratase (EC 4.2.1.51)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Periplasmic chorismate mutase I precursor (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Transcriptional repressor protein TyrR	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Chorismate mutase II (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Prephenate dehydrogenase (EC 1.3.1.12)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Arogenate dehydrogenase (EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Aromatic amino acid aminotransferase gamma (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Chorismate mutase III (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Arogenate dehydratase (EC 4.2.1.91)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
Isochorismate pyruvate-lyase	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(Phoenix_copy)	Experimental Subsystems	
ATP phosphoribosyltransferase (EC 2.4.2.17)	tsubsys2	Experimental Subsystems	
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	tsubsys2	Experimental Subsystems	
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	tsubsys2	Experimental Subsystems	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	tsubsys2	Experimental Subsystems	
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	tsubsys2	Experimental Subsystems	
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	tsubsys2	Experimental Subsystems	
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	tsubsys2	Experimental Subsystems	
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	tsubsys2	Experimental Subsystems	
Histidinol-phosphatase (EC 3.1.3.15)	tsubsys2	Experimental Subsystems	
Histidinol dehydrogenase (EC 1.1.1.23)	tsubsys2	Experimental Subsystems	
MAP kinase p38 alpha	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase p38 beta	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase p38 gamma	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase p38 delta	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase ERK1	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase ERK2	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase ERK3	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase ERK4	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase ERK8	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase JNK1	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase JNK2	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase JNK3	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase kinase MAP2K3	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase kinase MAP2K6	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase kinase MAP2K4	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase kinase kinase MAP3K1	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase ERK5	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
Serine, threonine protein kinase NLK	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase kinase kinase MAP3K3	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
Scaffoldin OSM	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
GTPase Rac1	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase activated protein kinase MAPKAPK2	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase activated protein kinase MAPKAPK3	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase activated protein kinase MAPKAPK5	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
Scaffoldin JIP-2	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
MAP kinase kinase kinase MAP3K9	P38_MAP_kinase_pathways	Regulation and Cell signaling	Signal transduction in Eukaryotes
Protein yihD	CBSS-360102.4.peg.4134	Clustering-based subsystems	
YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling	CBSS-360102.4.peg.4134	Clustering-based subsystems	
Periplasmic thiol:disulfide interchange protein DsbA	CBSS-360102.4.peg.4134	Clustering-based subsystems	
Mg ion P-type ATPase	Family_04_Mg2+_P-type_ATPase		
Mg ion transport ATPase protein C	Family_04_Mg2+_P-type_ATPase		
Excinuclease ABC subunit A	Family_04_Mg2+_P-type_ATPase		
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Family_04_Mg2+_P-type_ATPase		
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Family_04_Mg2+_P-type_ATPase		
Universal stress protein A (UspA)	Family_04_Mg2+_P-type_ATPase		
Trehalose operon transcriptional repressor	Family_04_Mg2+_P-type_ATPase		
Flagellar motor rotation protein MotB	Family_04_Mg2+_P-type_ATPase		
Na+/Pi symporter	Family_04_Mg2+_P-type_ATPase		
Mg transporter MgtE (contains CBS domain)	Family_04_Mg2+_P-type_ATPase		
Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein	CBSS-314267.3.peg.390	Clustering-based subsystems	Putative Isoquinoline 1-oxidoreductase subunit
Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16)	CBSS-314267.3.peg.390	Clustering-based subsystems	Putative Isoquinoline 1-oxidoreductase subunit
Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)	CBSS-314267.3.peg.390	Clustering-based subsystems	Putative Isoquinoline 1-oxidoreductase subunit
L-arabinose isomerase (EC 5.3.1.4)	CBSS-235909.3.peg.753		
Ribulokinase (EC 2.7.1.16)	CBSS-235909.3.peg.753		
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	CBSS-235909.3.peg.753		
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	CBSS-235909.3.peg.753		
Transcriptional repressor of arabinoside utilization operon, GntR family	CBSS-235909.3.peg.753		
Alpha-arabinosides ABC transport system, permease protein 2	CBSS-235909.3.peg.753		
Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)	CBSS-235909.3.peg.753		
Alpha-arabinosides ABC transport system, permease protein AraP	CBSS-235909.3.peg.753		
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)	CBSS-235909.3.peg.753		
Alpha-arabinosides ABC transport system, permease protein AraQ	CBSS-235909.3.peg.753		
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon	CBSS-235909.3.peg.753		
Sporulation thiol-disulfide oxidoreductase StoA precursor (Stage IV sporulation protein H)	Sporulation_draft	Dormancy and Sporulation	
Stage V sporulation protein B	Sporulation_draft	Dormancy and Sporulation	
Spore cortex-lytic enzyme precursor	Sporulation_draft	Dormancy and Sporulation	
Stage 0 sporulation protein YaaT	Sporulation_draft	Dormancy and Sporulation	
Spo0E regulatory protein, specific dephosphorylation of Spo0A-P (stage 0 sporulation)	Sporulation_draft	Dormancy and Sporulation	
Stage 0 sporulation two-component response regulator (Spo0A)	Sporulation_draft	Dormancy and Sporulation	
KinB signaling pathway activation protein	Sporulation_draft	Dormancy and Sporulation	
Spore germination protein GerD	Sporulation_draft	Dormancy and Sporulation	
Sporulation kinase A (EC 2.7.13.3)	Sporulation_draft	Dormancy and Sporulation	
Sporulation kinase B (EC 2.7.13.3)	Sporulation_draft	Dormancy and Sporulation	
Sporulation kinase B homolog 1	Sporulation_draft	Dormancy and Sporulation	
Sporulation kinase B homolog 2	Sporulation_draft	Dormancy and Sporulation	
spore peptidoglycan hydrolase (N-acetylglucosaminidase) (EC 3.2.1.-)	Sporulation_draft	Dormancy and Sporulation	
Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Lipoprotein signal peptidase (EC 3.4.23.36)	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Membrane-associated zinc metalloprotease	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Putative pheromone cAM373 precursor lipoprotein CamS	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Hypothetical similar to thiamin biosynthesis lipoprotein ApbE	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
NADH dehydrogenase (EC 1.6.99.3) in cluster with putative pheromone precursor	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Putative pheromone precursor lipoprotein	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Putative prenyltransferase, contains 1,4-dihydroxy-2-naphthoate octaprenyltransferase domain	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Pheromone response surface protein PrgC	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Aggregation substance Asa1/PrgB	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Surface exclusion protein Sea1/PrgA	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Pheromone cAD1 precursor lipoprotein Cad	Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	Regulation and Cell signaling	
Oxytetracycline resistance protein OtrA	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Translation elongation factor G	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Ribosome protection-type tetracycline resistance related proteins	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Ribosome protection-type tetracycline resistance related proteins, group 2	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Tetracycline resistance protein TetW	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Tetracycline resistance protein TetQ	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Tetracycline resistance protein TetM	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Tetracycline resistance protein TetP	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Tetracycline resistance protein TetO	Tetracycline_resistance,_ribosome_protection_type	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Flavodoxin	Flavodoxin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Flavodoxin 2	Flavodoxin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
NAD(P)H oxidoreductase YRKL (EC 1.6.99.-)	Flavodoxin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Flavodoxin 1	Flavodoxin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Flavoprotein MioC	Flavodoxin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C)	Flavodoxin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Dna binding response regulator PrrA (RegA)	Global_Two-component_Regulator_PrrBA_in_Proteobacteria	Regulation and Cell signaling	
Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-)	Global_Two-component_Regulator_PrrBA_in_Proteobacteria	Regulation and Cell signaling	
TRAP transporter solute receptor, unknown substrate 6	TRAP_Transporter_unknown_substrate_6	Experimental Subsystems	
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6	TRAP_Transporter_unknown_substrate_6	Experimental Subsystems	
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6	TRAP_Transporter_unknown_substrate_6	Experimental Subsystems	
Mercuric ion reductase (EC 1.16.1.1)	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Mercuric resistance operon coregulator	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Mercuric resistance operon regulatory protein	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Mercuric transport protein, MerC	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Mercuric transport protein, MerT	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Periplasmic mercury(+2) binding protein	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Mercuric transport protein, MerE	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Organomercurial lyase (EC 4.99.1.2)	Mercury_resistance_operon	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
PH adaptation potassium efflux system protein C	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
PH adaptation potassium efflux system protein B1	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
PH adaptation potassium efflux system protein B2	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
PH adaptation potassium efflux system protein D 1	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
pH adaptation potassium efflux system protein D 2	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
pH adaptation potassium efflux system protein D 3	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
PH adaptation potassium efflux system protein E	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
PH adaptation potassium efflux system protein G	CBSS-272569.1.peg.3198	Clustering-based subsystems	pH adaptation potassium efflux
Acyl dehydratase	CBSS-246196.1.peg.364	Clustering-based subsystems	Fatty acid metabolic cluster
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	CBSS-246196.1.peg.364	Clustering-based subsystems	Fatty acid metabolic cluster
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	CBSS-246196.1.peg.364	Clustering-based subsystems	Fatty acid metabolic cluster
Magnesium chelatase, subunit ChlI (EC 6.6.1.1)	CBSS-336982.3.peg.1011	Clustering-based subsystems	
FIG019045: long form Mg-chelase associated protein with vWA domain	CBSS-336982.3.peg.1011	Clustering-based subsystems	
FIG024850: short form Mg-chelase associated protein with vWA domain	CBSS-336982.3.peg.1011	Clustering-based subsystems	
FIGfam005179	CBSS-269482.1.peg.1294	Clustering-based subsystems	Probably organic hydroperoxide resistance related hypothetical protein
Homoserine kinase (EC 2.7.1.39)	CBSS-269482.1.peg.1294	Clustering-based subsystems	Probably organic hydroperoxide resistance related hypothetical protein
Organic hydroperoxide resistance transcriptional regulator	CBSS-269482.1.peg.1294	Clustering-based subsystems	Probably organic hydroperoxide resistance related hypothetical protein
Organic hydroperoxide resistance protein	CBSS-269482.1.peg.1294	Clustering-based subsystems	Probably organic hydroperoxide resistance related hypothetical protein
iron aquisition yersiniabactin synthesis enzyme (Irp1,polyketide synthetase)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
iron aquisition yersiniabactin synthesis enzyme (Irp2)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
iron aquisition yersiniabactin synthesis enzyme (Irp3)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
iron aquisition yersiniabactin synthesis enzyme (YbtT,resembles thioesterases)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
iron aquisition 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58,Irp5)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
iron aquisition outermembrane yersiniabactin receptor (FyuA,Psn,pesticin receptor)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
iron aquisition regulator (YbtA,AraC-like,required for transcription of FyuA/psn,Irp2)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
iron-chelator utilization protein	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Ferrichrome-iron receptor	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Yersiniabactin synthetase, thiazolinyl reductase component Irp3	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Alcaligin biosynthesis complex, long chain	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Schizokinen siderophore outer membrane receptor	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Rhizobactin 1021 siderophore outer membrane receptor	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Ferrichrome transport system permease protein fhuB (TC 3.A.1.14.3)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Lysine N-acyltransferase mbtK (EC 2.3.1.-) (N-acyltransferase mbtK) (Mycobactin synthetase protein K)	Siderophores_of_hydroxamate_family	Experimental Subsystems	
Rhizobactin receptor precursor RhtA	Siderophores_of_hydroxamate_family	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Quinolinate synthetase (EC 2.5.1.72)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
NAD synthetase (EC 6.3.1.5)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
NAD kinase (EC 2.7.1.23)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Nicotinamidase (EC 3.5.1.19)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Ribosyl nicotinamide transporter, PnuC-like	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
ADP-ribose pyrophosphatase (EC 3.6.1.13)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Ribosylnicotinamide kinase (EC 2.7.1.22)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
NMN synthetase (EC 6.3.1.-)	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Glutamine amidotransferase chain of NAD synthetase	Bacterial_short_NadE	Experimental Subsystems	Supplement for the paper 1
Adenylosuccinate lyase (EC 4.3.2.2)	CBSS-354.1.peg.876	Clustering-based subsystems	A cluster perhaps related to purine metabolism
FIG002903: a protein of unknown function perhaps involved in purine metabolism	CBSS-354.1.peg.876	Clustering-based subsystems	A cluster perhaps related to purine metabolism
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	CBSS-354.1.peg.876	Clustering-based subsystems	A cluster perhaps related to purine metabolism
Nudix-like NDP and NTP phosphohydrolase YmfB	CBSS-354.1.peg.876	Clustering-based subsystems	A cluster perhaps related to purine metabolism
FIG002776: hypothetical protein	CBSS-354.1.peg.876	Clustering-based subsystems	A cluster perhaps related to purine metabolism
Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)	CBSS-354.1.peg.876	Clustering-based subsystems	A cluster perhaps related to purine metabolism
proteasome subunit alpha1 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit alpha2 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit alpha3 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit alpha4 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit alpha5 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit alpha6 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit alpha7 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta1 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta2 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta3 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta4 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta5 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta6 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta7 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpt1	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpt2	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpt3	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpt4	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpt5	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpt6	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn1	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn2	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn3	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn5	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn6	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn7	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn8	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn9	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn10	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn11	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn12	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit S5b	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit p28	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit p29	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn4	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome regulatory subunit Rpn13	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta9 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta5b (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta10 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta8 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
proteasome subunit beta11 (EC 3.4.25.1)	Proteasome_eukaryotic	Protein Metabolism	Protein degradation
Periplasmic/membrane protein associated with DUF414	A_cluster_based_subsystem_relating_to_DUF414	Clustering-based subsystems	
Protein of unknown function DUF414	A_cluster_based_subsystem_relating_to_DUF414	Clustering-based subsystems	
Putative methyltransferase associated with DUF414	A_cluster_based_subsystem_relating_to_DUF414	Clustering-based subsystems	
3-dehydroquinate synthase (EC 4.2.3.4)	Aromatic_conversions_and_predicted_Co2_transporter_cluster	Clustering-based subsystems	
Co2 transporter containing CBS domains	Aromatic_conversions_and_predicted_Co2_transporter_cluster	Clustering-based subsystems	
Shikimate kinase I (EC 2.7.1.71)	Aromatic_conversions_and_predicted_Co2_transporter_cluster	Clustering-based subsystems	
Tyrosine recombinase XerD	Aromatic_conversions_and_predicted_Co2_transporter_cluster	Clustering-based subsystems	
FIG094713: hypothetical protein	Aromatic_conversions_and_predicted_Co2_transporter_cluster	Clustering-based subsystems	
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	tRNA_aminoacylation,_Trp	Protein Metabolism	Protein biosynthesis
Possible ABC transporter, periplasmic substrate X binding protein precursor	ABC_transporter_of_unknown_substrate_X	Membrane Transport	ABC transporters
Putative ABC transporter of substrate X, ATP-binding subunit	ABC_transporter_of_unknown_substrate_X	Membrane Transport	ABC transporters
Putative ABC transporter of substrate X, permease subunit I	ABC_transporter_of_unknown_substrate_X	Membrane Transport	ABC transporters
Putative ABC transporter of substrate X, permease subunit II	ABC_transporter_of_unknown_substrate_X	Membrane Transport	ABC transporters
P60 extracellular protein, invasion associated protein Iap	Listeria_autolysins	Experimental Subsystems	
Peptidase Lmo0394 homolog	Listeria_autolysins	Experimental Subsystems	
Peptidoglycan lytic protein P45	Listeria_autolysins	Experimental Subsystems	
SMC peptidase	Listeria_autolysins	Experimental Subsystems	
Autolysin, amidase	Listeria_autolysins	Experimental Subsystems	
N-acetylmuramoyl-L-alanine amidase family 4 (EC 3.5.1.28), needed for cell separation and autolysis	Listeria_autolysins	Experimental Subsystems	
N-acetylglucosaminidase (EC 3.2.1.96) Auto	Listeria_autolysins	Experimental Subsystems	
Flagellin protein FlaA	Listeria_autolysins	Experimental Subsystems	
Internalin-like protein (LPXTG motif) Lmo0327 homolog / murein-hydrolysing domain	Listeria_autolysins	Experimental Subsystems	
FIG011400: transcriptional activator of Lmo0327 homolog	Listeria_autolysins	Experimental Subsystems	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	Listeria_autolysins	Experimental Subsystems	
D-glutamyl-L-m-Dpm peptidase lmo1104 homolog	Listeria_autolysins	Experimental Subsystems	
Uncharacterized protein MJ0202	DUF89	Experimental Subsystems	
Replication initiation protein, topisomerase	Rolling-circle_replication	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Topoisomerase IV subunit A (EC 5.99.1.-)	Resistance_to_fluoroquinolones	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Topoisomerase IV subunit B (EC 5.99.1.-)	Resistance_to_fluoroquinolones	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
DNA gyrase subunit A (EC 5.99.1.3)	Resistance_to_fluoroquinolones	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
DNA gyrase subunit B (EC 5.99.1.3)	Resistance_to_fluoroquinolones	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Efflux pump Lde	Resistance_to_fluoroquinolones	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Flagellar L-ring protein FlgH	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar M-ring protein FliF	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar P-ring protein FlgI	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar assembly protein FliH	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body P-ring formation protein FlgA	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body rod modification protein FlgD	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body rod protein FlgB	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body rod protein FlgC	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body rod protein FlgF	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body rod protein FlgG	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FlgN	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FlhA	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FlhB	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliC	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliL	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliO	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliP	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliQ	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliR	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliS	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliT	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliZ	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook protein FlgE	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook-associated protein 3	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook-associated protein FlgK	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook-associated protein FlgL	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook-associated protein FliD	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook-basal body complex protein FliE	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook-length control protein FliK	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor rotation protein MotA	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor rotation protein MotB	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor switch protein FliG	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor switch protein FliM	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor switch protein FliN	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar protein FlhE	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar protein FliJ	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar transcriptional activator FlhC	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar transcriptional activator FlhD	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellum-specific ATP synthase FliI	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Negative regulator of flagellin synthesis FlgM	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
RNA polymerase sigma factor RpoD	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
RNA polymerase sigma factor for flagellar operon	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
RNA polymerase sigma-54 factor RpoN	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FlhF	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar synthesis regulator FleN	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Negative regulator of flagellin synthesis	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar sensor histidine kinase FleS	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaA	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaG	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar regulatory protein FleQ	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar protein FlbB	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar protein FlbD	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar trans-acting factor FliX	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaB	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaC	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaD	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaF	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaE	Flagellum	Motility and Chemotaxis	Flagellar motility in Prokaryota
Disulfide bond regulator	Disulphide_related_cluster	Clustering-based subsystems	
FIG002984: FAD-dependent pyridine nucleotide-disulphide oxidoreductase	Disulphide_related_cluster	Clustering-based subsystems	
FIG003846: hypothetical protein	Disulphide_related_cluster	Clustering-based subsystems	
FIG007303: uncharacterized protein	Disulphide_related_cluster	Clustering-based subsystems	
Polysulfide binding protein	Disulphide_related_cluster	Clustering-based subsystems	
Zn-dependent hydroxyacylglutathione hydrolase	Disulphide_related_cluster	Clustering-based subsystems	
membrane protein, inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
FAD-binding protein, inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41), FabV inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60), inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41), inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41), FabB inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
4'-phosphopantetheinyl transferase (EC 2.7.8.-), inferred for ABFAE pathway	ACP_Based_Fatty_Acid_Elongation	Experimental Subsystems	Fatty acids
Large protein containing transglutaminase-like domain	CBSS-258594.1.peg.3734	Experimental Subsystems	
Protein containing domains DUF404, DUF407, DUF403	CBSS-258594.1.peg.3734	Experimental Subsystems	
Small protein containing transglutaminase-like domain	CBSS-258594.1.peg.3734	Experimental Subsystems	
Protein containing domains DUF404, DUF407	CBSS-258594.1.peg.3734	Experimental Subsystems	
Protein containing domains DUF403	CBSS-258594.1.peg.3734	Experimental Subsystems	
Protein containing transglutaminase-like domain, putative cysteine protease	CBSS-258594.1.peg.3734	Experimental Subsystems	
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Family_07_K+_P-type_ATPase		
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Family_07_K+_P-type_ATPase		
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Family_07_K+_P-type_ATPase		
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Family_07_K+_P-type_ATPase		
DNA-binding response regulator KdpE	Family_07_K+_P-type_ATPase		
Potassium-transporting ATPase, KdpF subunit	Family_07_K+_P-type_ATPase		
UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
4-amino-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) acetyltrasferase	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
UDP-glucose 4-epimerase (EC 5.1.3.2)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Alpha-1,4-N-acetylgalactosamine transferase PglH (EC 2.4.1.-)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Alpha-1,4-N-acetylgalactosamine transferase PglJ (EC 2.4.1.-)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Glycosyltransferase PglI (EC 2.4.1.-)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Phospholipid-lipopolysaccharide ABC transporter	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Oligosaccharyltransferase PglB (EC 2.4.1.119)	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
N-linked glycosylation glycosyltransferase PglG	N-linked_Glycosylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system	Trans-envelope_signaling_system_VreARI_in_Pseudomonas	Regulation and Cell signaling	
Extracytoplasmic function (ECF) sigma factor VreI	Trans-envelope_signaling_system_VreARI_in_Pseudomonas	Regulation and Cell signaling	
Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system	Trans-envelope_signaling_system_VreARI_in_Pseudomonas	Regulation and Cell signaling	
Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system	Trans-envelope_signaling_system_VreARI_in_Pseudomonas	Regulation and Cell signaling	
Hemolysin activation/secretion protein associated with VreARI signalling system	Trans-envelope_signaling_system_VreARI_in_Pseudomonas	Regulation and Cell signaling	
Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system	Trans-envelope_signaling_system_VreARI_in_Pseudomonas	Regulation and Cell signaling	
Putative outer membrane TonB-dependent receptor associated with haemagglutinin family outer membrane protein	Trans-envelope_signaling_system_VreARI_in_Pseudomonas	Regulation and Cell signaling	
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	CBSS-1806.1.peg.3045	Clustering-based subsystems	
FIG007959: peptidase, M16 family	CBSS-1806.1.peg.3045	Clustering-based subsystems	
Mannosylfructose-phosphate synthase mfpsA	Mannosylfructose_biosynthesis	Experimental Subsystems	
Mannosylfructose-phosphate phosphatase mfppA	Mannosylfructose_biosynthesis	Experimental Subsystems	
Possible transcriptional regulator of mannosylfructose biosynthesis	Mannosylfructose_biosynthesis	Experimental Subsystems	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Experimental_Iddo_1	Experimental Subsystems	
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	Experimental_Iddo_1	Experimental Subsystems	
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I	Experimental_Iddo_1	Experimental Subsystems	
GTP pyrophosphokinase (EC 2.7.6.5)	Experimental_Iddo_1	Experimental Subsystems	
Conjugative transfer ATPase PilQ in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer ATPase PilU in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer pilus-tip adhesin protein PilV in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer protein PilL in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer protein PilM in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer protein PilN in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer protein PilO in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer protein PilP in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer protein PilR in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Conjugative transfer protein PilS in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
DNA/RNA helicase in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
hypothetical protein in PFGI-1-like cluster	PFGI-1-like_cluster_2	Clustering-based subsystems	
Protein YicC	CBSS-323097.3.peg.2594	Clustering-based subsystems	
Guanylate kinase (EC 2.7.4.8)	CBSS-323097.3.peg.2594	Clustering-based subsystems	
FIG004453: protein YceG like	CBSS-323097.3.peg.2594	Clustering-based subsystems	
FIG003307: hypothetical protein	CBSS-323097.3.peg.2594	Clustering-based subsystems	
Response regulator, ompR family [USSDB2A]	USS-DB-2	Clustering-based subsystems	
Two-component system sensor protein [USSDB2B]	USS-DB-2	Clustering-based subsystems	
Efflux system membrane fusion protein [USSDB2C]	USS-DB-2	Clustering-based subsystems	
Multidrug efflux transporter [USSDB2D]	USS-DB-2	Clustering-based subsystems	
Outer membrane protein [USSDB2E]	USS-DB-2	Clustering-based subsystems	
2'-5' RNA ligase	RNA_processing_orphans	RNA Metabolism	RNA processing and modification
2H phosphoesterase superfamily protein Bsu1186 (yjcG)	RNA_processing_orphans	RNA Metabolism	RNA processing and modification
2H phosphoesterase superfamily protein BC2899	RNA_processing_orphans	RNA Metabolism	RNA processing and modification
Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)	Nucleoside_triphosphate_pyrophosphohydrolase_MazG	Nucleosides and Nucleotides	Detoxification
possible tetrapyrrole methyltransferase domain	Nucleoside_triphosphate_pyrophosphohydrolase_MazG	Nucleosides and Nucleotides	Detoxification
MazG-related protein	Nucleoside_triphosphate_pyrophosphohydrolase_MazG	Nucleosides and Nucleotides	Detoxification
MazG protein domain	Nucleoside_triphosphate_pyrophosphohydrolase_MazG	Nucleosides and Nucleotides	Detoxification
Programmed cell death antitoxin MazE	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death toxin MazF	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death antitoxin ChpS	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death toxin ChpB	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death antitoxin PemI	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death toxin PemK	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death antitoxin YdcD	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death toxin YdcE	MazEF_toxin-antitoxing_(programmed_cell_death)_system	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	Possible_Ammonia_conversion_cluster	Clustering-based subsystems	
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	Possible_Ammonia_conversion_cluster	Clustering-based subsystems	
Aminodeoxychorismate lyase (EC 4.1.3.38)	Possible_Ammonia_conversion_cluster	Clustering-based subsystems	
FIG025881: hypothetical protein in Ammonia conversion cluster	Possible_Ammonia_conversion_cluster	Clustering-based subsystems	
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Possible_Ammonia_conversion_cluster	Clustering-based subsystems	
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Possible_Ammonia_conversion_cluster	Clustering-based subsystems	
Lysine biosynthesis protein LysX	L-2-amino-adipate_to_lysine_module	Experimental Subsystems	
Acetylaminoadipate kinase (EC 2.7.2.-)	L-2-amino-adipate_to_lysine_module	Experimental Subsystems	
N-acetyl-gamma-aminoadipyl-phosphate reductase (EC 1.2.1.-)	L-2-amino-adipate_to_lysine_module	Experimental Subsystems	
N-acetyl-lysine aminotransferase (EC 2.6.1.-)	L-2-amino-adipate_to_lysine_module	Experimental Subsystems	
N-acetyl-lysine deacetylase (EC 3.5.1.-)	L-2-amino-adipate_to_lysine_module	Experimental Subsystems	
Lysine biosynthesis protein LysW	L-2-amino-adipate_to_lysine_module	Experimental Subsystems	
Serine protein kinase (prkA protein), P-loop containing	CBSS-188.1.peg.6720	Clustering-based subsystems	
FIG004684: SpoVR-like protein	CBSS-188.1.peg.6720	Clustering-based subsystems	
FIG002076: hypothetical protein	CBSS-188.1.peg.6720	Clustering-based subsystems	
T4-like phage protein, T4 GC0443	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cyanophage-encoded porphyrin biosynthetic protein, CobS	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0201	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0112	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage T4-like protein, T4 GC0049	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage T4-like protein, T4 GC0043	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cyanophage-encoded pyrophosphatase, MazG	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phosphate starvation-inducible protein PhoH, predicted ATPase	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0152	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage heat shock protein Hsp20	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage DUF1825 domain-containing protein	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0176	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phytanoyl-CoA dioxygenase (EC 1.14.11.18)	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage T4-like protein, T4 GC0071	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
photosystem II protein D1 (PsbA)	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0313	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage peptidase	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Possible methylamine utilization protein, T4-like	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0312	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0321	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0142	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0250	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC0198	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC1149	T4-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Nitrogen_fixation	Nitrogen Metabolism	
Homocitrate synthase (EC 2.3.3.14)	Nitrogen_fixation	Nitrogen Metabolism	
Iron-sulfur cluster assembly scaffold protein NifU	Nitrogen_fixation	Nitrogen Metabolism	
NifM protein	Nitrogen_fixation	Nitrogen Metabolism	
NifT protein	Nitrogen_fixation	Nitrogen Metabolism	
NifZ protein	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor carrier protein NifX	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ	Nitrogen_fixation	Nitrogen Metabolism	
4Fe-4S ferredoxin, nitrogenase-associated	Nitrogen_fixation	Nitrogen Metabolism	
Cysteine desulfurase (EC 2.8.1.7)	Nitrogen_fixation	Nitrogen Metabolism	
NifX-associated protein	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase stabilizing/protective protein NifW	Nitrogen_fixation	Nitrogen Metabolism	
AnfO protein, required for Mo- and V-independent nitrogenase	Nitrogen_fixation	Nitrogen Metabolism	
NifB-domain protein, type 2	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (iron-iron) alpha chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (iron-iron) beta chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (iron-iron) delta chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (iron-iron) reductase and maturation protein AnfH	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) alpha chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) beta chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) delta chain (EC 1.18.6.1)	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfE	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfN	Nitrogen_fixation	Nitrogen Metabolism	
Transcriptional repressor of nif and glnA operons	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA	Nitrogen_fixation	Nitrogen Metabolism	
AnfR protein, required for Mo- and V-independent nitrogenase	Nitrogen_fixation	Nitrogen Metabolism	
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis	Nitrogen_fixation	Nitrogen Metabolism	
NifY protein	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (iron-iron) transcriptional regulator	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) reductase and maturation protein VnfH	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) transcriptional regulator VnfA	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase cofactor carrier protein NafY	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfX	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfY	Nitrogen_fixation	Nitrogen Metabolism	
Nitrogenase-associated protein NifO	Nitrogen_fixation	Nitrogen Metabolism	
probable iron binding protein from the HesB_IscA_SufA family in Nif operon	Nitrogen_fixation	Nitrogen Metabolism	
Homocitrate synthase alpha subunit (EC 2.3.3.14)	Nitrogen_fixation	Nitrogen Metabolism	
Homocitrate synthase omega subunit (EC 2.3.3.14)	Nitrogen_fixation	Nitrogen Metabolism	
Phage T7 exclusion protein	CBSS-159087.4.peg.2189	Clustering-based subsystems	
Phage T7 exclusion protein associated hypothetical protein	CBSS-159087.4.peg.2189	Clustering-based subsystems	
FIG014574: hypothetical protein	CBSS-159087.4.peg.2189	Clustering-based subsystems	
Putative deoxyribonuclease similar to YcfH, type 4	CBSS-159087.4.peg.2189	Clustering-based subsystems	
Phage lysin, 1,4-beta-N-acetylmuramidase (EC 3.2.1.17) or lysozyme	Phage_lysis_modules		
Phage holin	Phage_lysis_modules		
Phage lysin, N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Phage_lysis_modules		
Phage endolysin	Phage_lysis_modules		
Phage peptidoglycan hydrolase	Phage_lysis_modules		
Phage lysin, endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)	Phage_lysis_modules		
CHAP domain-containing phage lysin	Phage_lysis_modules		
Phage lysin, glycosyl hydrolase	Phage_lysis_modules		
Phage lysin (EC 3.2.1.17)	Phage_lysis_modules		
Phage outer membrane lytic protein Rz	Phage_lysis_modules		
Phage outer membrane lipoprotein Rz1	Phage_lysis_modules		
Phage spanin Rz	Phage_lysis_modules		
Phage endopeptidase (EC 3.4.-.-) Rz	Phage_lysis_modules		
Phage lysin, L-alanyl-D-glutamate peptidase (EC 3.4.-.-)	Phage_lysis_modules		
Phage holin, class II	Phage_lysis_modules		
Phage lysin, cell wall-binding domain	Phage_lysis_modules		
Truncated phage lysin, N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Phage_lysis_modules		
Phage lysin, phospho-MurNAc-pentapeptide translocase inhibitor	Phage_lysis_modules		
Mycobacteriophage lysis protein, LysB	Phage_lysis_modules		
Acetone carboxylase, alpha subunit (EC 6.4.1.6)	Acetone_carboxylase	Carbohydrates	
Acetone carboxylase, beta subunit (EC 6.4.1.6)	Acetone_carboxylase	Carbohydrates	
Acetone carboxylase, gamma subunit (EC 6.4.1.6)	Acetone_carboxylase	Carbohydrates	
L-Cystine ABC transporter, periplasmic cystine-binding protein TcyK	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-Cystine ABC transporter, ATP-binding protein TcyN	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-Cystine ABC transporter, permease protein TcyM	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-Cystine ABC transporter, permease protein TcyL	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
HTH-type transcriptional regulator YtlI, LysR family	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
Cystathionine gamma-synthase (EC 2.5.1.48)	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
Cystathionine beta-lyase (EC 4.4.1.8)	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
Bacterial luciferase family protein YtmO, in cluster with L-cystine ABC transporter	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-Cystine ABC transporter, periplasmic cystine-binding protein TcyJ	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-cystine uptake protein TcyP	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-Cystine ABC transporter, permease protein TcyB	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
L-Cystine ABC transporter, ATP-binding protein TcyC	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
Cystine ABC transporter, periplasmic cystine-binding protein FliY	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
Cystine ABC transporter, permease protein	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
Cystine ABC transporter, ATP-binding protein	L-Cystine_Uptake_and_Metabolism	Sulfur Metabolism	Organic sulfur assimilation
Lipoprotein releasing system transmembrane protein LolC	Lipoprotein_sorting_system	Cell Wall and Capsule	Gram-Negative cell wall components
Lipoprotein releasing system ATP-binding protein LolD	Lipoprotein_sorting_system	Cell Wall and Capsule	Gram-Negative cell wall components
Lipoprotein releasing system transmembrane protein LolE	Lipoprotein_sorting_system	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane lipoprotein LolB precursor	Lipoprotein_sorting_system	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane lipoprotein carrier protein LolA	Lipoprotein_sorting_system	Cell Wall and Capsule	Gram-Negative cell wall components
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Glycogen debranching enzyme (EC 3.2.1.-)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Trehalose phosphorylase (EC 2.4.1.64)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Trehalose-6-phosphate phosphatase (EC 3.1.3.12)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Malto-oligosyltrehalose synthase (EC 5.4.99.15)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Alpha-amylase (EC 3.2.1.1)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Glucoamylase (EC 3.2.1.3)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Trehalose synthase (EC 5.4.99.16)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Putative glucanase glgE (EC 3.2.1.-)	Trehalose_Biosynthesis	Carbohydrates	Di- and oligosaccharides
Iron compound ABC uptake transporter substrate-binding protein	Siderophore_Anthrachelin	Experimental Subsystems	
Iron compound ABC uptake transporter permease protein	Siderophore_Anthrachelin	Experimental Subsystems	
Iron compound ABC uptake transporter ATP-binding protein	Siderophore_Anthrachelin	Experimental Subsystems	
Antibiotic biosynthesis monooxygenase domain-containing protein	Siderophore_Anthrachelin	Experimental Subsystems	
Anthrachelin biosynthesis protein AsbA	Siderophore_Anthrachelin	Experimental Subsystems	
Anthrachelin biosynthesis protein AsbB	Siderophore_Anthrachelin	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase associated with anthrachelin biosynthesis	Siderophore_Anthrachelin	Experimental Subsystems	
Hypothetical protein GBAA1985 associated with anthrachelin biosynthesis, unique	Siderophore_Anthrachelin	Experimental Subsystems	
Hypothetical protein GBAA1986 associated with anthrachelin biosynthesis, isomerase-like TIM barrel domain	Siderophore_Anthrachelin	Experimental Subsystems	
Acyl carrier protein associated with anthrachelin biosynthesis	Siderophore_Anthrachelin	Experimental Subsystems	
Uncharacterized iron compound ABC uptake transporter, substrate-binding protein	Siderophore_Anthrachelin	Experimental Subsystems	
Uncharacterized iron compound ABC uptake transporter, permease protein	Siderophore_Anthrachelin	Experimental Subsystems	
Uncharacterized iron compound ABC uptake transporter, ATP-binding protein	Siderophore_Anthrachelin	Experimental Subsystems	
Transcriptional regulator AglR, LacI family	Periplasmic-Binding-Protein-Dependent_Transport_System_for_&#945;-Glucosides	Membrane Transport	ABC transporters
Alpha-glucosides-binding periplasmic protein AglE precursor	Periplasmic-Binding-Protein-Dependent_Transport_System_for_&#945;-Glucosides	Membrane Transport	ABC transporters
ABC alpha-glucoside transporter, inner membrane subunit AglF	Periplasmic-Binding-Protein-Dependent_Transport_System_for_&#945;-Glucosides	Membrane Transport	ABC transporters
Alpha-glucoside transport system permease protein AglG	Periplasmic-Binding-Protein-Dependent_Transport_System_for_&#945;-Glucosides	Membrane Transport	ABC transporters
Alpha-glucoside transport ATP-binding protein AglK	Periplasmic-Binding-Protein-Dependent_Transport_System_for_&#945;-Glucosides	Membrane Transport	ABC transporters
Alpha-glucosidase AglA	Periplasmic-Binding-Protein-Dependent_Transport_System_for_&#945;-Glucosides	Membrane Transport	ABC transporters
SSU ribosomal protein S2p (SAe), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S3p (S3e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S4p (S9e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S5p (S2e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S6p, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S7p (S5e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S9p (S16e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S10p (S20e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S11p (S14e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S12p (S23e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S13p (S18e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S14p (S29e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S15p (S13e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S16p, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S18p, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S19p (S15e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S29mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S33mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S8p (S15Ae), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S17p (S11e), mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S21p, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S23mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S25mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S35mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein MRP1, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein MRP10, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein MRP13, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein RSM22, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein RSM24, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein RSM28, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein PET123, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein VAR1, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S22mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S24mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S27mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S28mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S30mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S31mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S34mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S26mt, mitochondrial	Ribosome_SSU_mitochondrial	Protein Metabolism	Protein biosynthesis
Fibrillarin	Ribosome_biogenesis_archaeal	RNA Metabolism	RNA processing and modification
rRNA biogenesis protein Nop5/Nop56	Ribosome_biogenesis_archaeal	RNA Metabolism	RNA processing and modification
Selenoprotein O and cysteine-containing homologs	Selenoprotein_O	Protein Metabolism	Selenoproteins
Adenylylsulfate kinase (EC 2.7.1.25)	O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative sugar nucleotidyltransferase	O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative amidotransferase (Type 1 glutamine amidotransferase - GATase1)	O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Pyruvate phosphate dikinase	O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Methyltransferase (EC 2.1.1.-), possibly involved in O-methyl phosphoramidate capsule modification	O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative glycosyltransferase involved in O-methyl phosphoramidate capsule modification	O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A	USS-DB-6	Clustering-based subsystems	
ABC transporter ATP-binding protein USSDB6B	USS-DB-6	Clustering-based subsystems	
ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C	USS-DB-6	Clustering-based subsystems	
Membrane lipoprotein lipid attachment site containing protein USSDB6D	USS-DB-6	Clustering-based subsystems	
4-hydroxybenzoyl-CoA thioesterase family active site	Ton_and_Tol_transport_systems	Membrane Transport	
Aerobactin siderophore receptor IutA	Ton_and_Tol_transport_systems	Membrane Transport	
Biopolymer transport protein ExbD/TolR	Ton_and_Tol_transport_systems	Membrane Transport	
Ferric siderophore transport system, periplasmic binding protein TonB	Ton_and_Tol_transport_systems	Membrane Transport	
MotA/TolQ/ExbB proton channel family protein	Ton_and_Tol_transport_systems	Membrane Transport	
Outer membrane ferripyoverdine receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid	Ton_and_Tol_transport_systems	Membrane Transport	
Peptidoglycan-associated lipoprotein precursor	Ton_and_Tol_transport_systems	Membrane Transport	
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)	Ton_and_Tol_transport_systems	Membrane Transport	
TPR repeat containing exported protein	Ton_and_Tol_transport_systems	Membrane Transport	
Tol biopolymer transport system, TolR protein	Ton_and_Tol_transport_systems	Membrane Transport	
TolA protein	Ton_and_Tol_transport_systems	Membrane Transport	
TonB-dependent hemin , ferrichrome receptor	Ton_and_Tol_transport_systems	Membrane Transport	
TonB-dependent receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Type I secretion outer membrane protein, TolC precursor	Ton_and_Tol_transport_systems	Membrane Transport	
tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins	Ton_and_Tol_transport_systems	Membrane Transport	
Ferric siderophore transport system, biopolymer transport protein ExbB	Ton_and_Tol_transport_systems	Membrane Transport	
Putative OMR family iron-siderophore receptor precursor	Ton_and_Tol_transport_systems	Membrane Transport	
iron-chelator utilization protein	Ton_and_Tol_transport_systems	Membrane Transport	
Hemophore HasA	Ton_and_Tol_transport_systems	Membrane Transport	
TonB-dependent siderophore receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Putative Ton-B dependent hemine receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Haemin uptake system outer membrane receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Colicin I receptor precursor	Ton_and_Tol_transport_systems	Membrane Transport	
Outer membrane lipoprotein omp16 precursor	Ton_and_Tol_transport_systems	Membrane Transport	
putative TolA function	Ton_and_Tol_transport_systems	Membrane Transport	
Ferric receptor CfrA	Ton_and_Tol_transport_systems	Membrane Transport	
Ferric siderophore transport system, biopolymer transport protein ExbD	Ton_and_Tol_transport_systems	Membrane Transport	
Biopolymer transport ExbD protein	Ton_and_Tol_transport_systems	Membrane Transport	
TPR domain protein, putative component of TonB system	Ton_and_Tol_transport_systems	Membrane Transport	
TonB system biopolymer transport component	Ton_and_Tol_transport_systems	Membrane Transport	
Putative TolA protein	Ton_and_Tol_transport_systems	Membrane Transport	
Putative tonB protein	Ton_and_Tol_transport_systems	Membrane Transport	
Predicted b-glucoside-specific TonB-dependent outer membrane receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Putative TolA protein involved in Tol transport system in Chlamydia	Ton_and_Tol_transport_systems	Membrane Transport	
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Galactose-regulated TonB-dependent outer membrane receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Sialic acid-regulated TonB-dependent outer membrane receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Mannosides-regulated TonB-dependent outer membrane receptor	Ton_and_Tol_transport_systems	Membrane Transport	
Defective in anther DEHISCENCE1	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Lipoxygenase, chloroplast precursor (EC 1.13.11.12)	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Allene oxide synthase, chloroplast precursor (EC 4.2.1.92)	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
12-oxophytodienoate reductase (OPR3)(DDE1)	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Allene-oxide cyclase	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Lipoxygenase (EC 1.13.11.12)	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Secretory low molecular weight phospholipase A2 beta	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Secretory low molecular weight phospholipase A2 alpha	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Secretory low molecular weight phospholipase A2 delta	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Secretory low molecular weight phospholipase A2 gamma	Octadecanoids	Secondary Metabolism	Plant Octadecanoids
Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)	Restriction-Modification_System	DNA Metabolism	
Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)	Restriction-Modification_System	DNA Metabolism	
Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)	Restriction-Modification_System	DNA Metabolism	
Putative predicted metal-dependent hydrolase	Restriction-Modification_System	DNA Metabolism	
Type III restriction-modification system methylation subunit (EC 2.1.1.72)	Restriction-Modification_System	DNA Metabolism	
Type III restriction-modification system DNA endonuclease res (EC 3.1.21.5)	Restriction-Modification_System	DNA Metabolism	
Putative DNA-binding protein in cluster with Type I restriction-modification system	Restriction-Modification_System	DNA Metabolism	
Type III restriction-modification system StyLTI enzyme res (EC 3.1.21.5)	Restriction-Modification_System	DNA Metabolism	
Predicted polyamine sensor NspS, involved in biofilm formation	Biofilm_formation_in_Vibrio	Experimental Subsystems	
C-di-GMP phosphodiesterase MbaA, repressor of biofilm formation	Biofilm_formation_in_Vibrio	Experimental Subsystems	
Hypothetical cytoplasmic protein in cluster with NspS	Biofilm_formation_in_Vibrio	Experimental Subsystems	
Bacteriocin-like peptide I BlpI	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin-like peptide J BlpJ	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin-like peptide M BlpM	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin immunity protein BlpL	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacterocin transport accessory protein	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bactriocin immunity protein BlpY	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
BlpT protein, fusion	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
BlpZ protein, fusion	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin-like peptide N BlpN	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin-like peptide O BlpO	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bactriocin immunity protein BlpX	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Lactacin F ABC transporter permease component	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Lactacin F immunity protein	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Lactacin F transporter auxillary protein	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Lactacin F two-component system response regulator	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Lactacin F two-component system sensor histidine kinase	Bacteriocin-like_peptides_Blp	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Aconitate hydratase (EC 4.2.1.3)	Biogenesis_of_c-type_cytochromes	Respiration	
Ccs1/ResB-related putative cytochrome C-type biogenesis protein	Biogenesis_of_c-type_cytochromes	Respiration	
Citrate synthase (si) (EC 2.3.3.1)	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein CcsA/ResC	Biogenesis_of_c-type_cytochromes	Respiration	
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Biogenesis_of_c-type_cytochromes	Respiration	
Thiol:disulfide oxidoreductase related to ResA	Biogenesis_of_c-type_cytochromes	Respiration	
Periplasmic divalent cation tolerance protein cutA	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein Ccs1/ResB	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)	Biogenesis_of_c-type_cytochromes	Respiration	
Putative cytochrome C-type biogenesis protein	Biogenesis_of_c-type_cytochromes	Respiration	
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA	Biogenesis_of_c-type_cytochromes	Respiration	
ABC transporter involved in cytochrome c biogenesis, CcmB subunit	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c heme lyase subunit CcmF	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c heme lyase subunit CcmL	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein CcmE, heme chaperone	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein ResA	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c heme lyase subunit CcmH	Biogenesis_of_c-type_cytochromes	Respiration	
Periplasmic thiol:disulfide interchange protein DsbA	Biogenesis_of_c-type_cytochromes	Respiration	
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation	Biogenesis_of_c-type_cytochromes	Respiration	
Thiol:disulfide oxidoreductase TlpA	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE	Biogenesis_of_c-type_cytochromes	Respiration	
Hypothetical similar to heme lyase subunit CcmH, colocalized with sarcosine oxidase	Biogenesis_of_c-type_cytochromes	Respiration	
Putative cytochrome c-type biogenesis protein related to CcmF	Biogenesis_of_c-type_cytochromes	Respiration	
Inner membrane thiol:disulfide oxidoreductase, DsbB-like	Biogenesis_of_c-type_cytochromes	Respiration	
Periplasmic thiol:disulfide interchange protein, DsbA-like	Biogenesis_of_c-type_cytochromes	Respiration	
Putative arylsulfate sulfotransferase (EC 2.8.2.22)	Biogenesis_of_c-type_cytochromes	Respiration	
Hypothetical protein associated with short form of CcmH	Biogenesis_of_c-type_cytochromes	Respiration	
Hypothetical protein distantly related to putative heme lyase CcmC	Biogenesis_of_c-type_cytochromes	Respiration	
Predicted transporter accosiated with cytochrome c biogenesis	Biogenesis_of_c-type_cytochromes	Respiration	
Hypothetical distantly related to thiol:disulfide interchange protein DsbA	Biogenesis_of_c-type_cytochromes	Respiration	
Putative ATP-binding component of ABC transporter involved in cytochrome c biogenesis	Biogenesis_of_c-type_cytochromes	Respiration	
Cytochrome c-type biogenesis protein, archaeal, distantly related to heme lyase subunit CcmF	Biogenesis_of_c-type_cytochromes	Respiration	
Putative cytochrome c biogenesis factor, archaeal	Biogenesis_of_c-type_cytochromes	Respiration	
Putative thiol:disulfide oxidoreductase involved in cytochrome C-type biogenesis	Biogenesis_of_c-type_cytochromes	Respiration	
Hypothetical protein distantly related to cytochrome C-type biogenesis protein CcdA	Biogenesis_of_c-type_cytochromes	Respiration	
Similar to cytochrome c-type biogenesis protein CcsA/ResC	Biogenesis_of_c-type_cytochromes	Respiration	
pH adaptation potassium efflux system a	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaptation potassium efflux system c	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaptation potassium efflux system d	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaptation potassium efflux system e	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaptation potassium efflux system f	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaptation potassium efflux system g	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaption potassium efflux system protein PhaD	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaption potassium efflux system protein PhaE	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaption potassium efflux system protein PhaF	pH_adaptation_potassium_efflux_system	Potassium metabolism	
pH adaption potassium efflux system protein PhaG	pH_adaptation_potassium_efflux_system	Potassium metabolism	
FIG009095: D,D-carboxypeptidase family protein	CBSS-584.1.peg.1352	Clustering-based subsystems	a carboxypeptidase, a reductase, and a step from lysibe biosynthesis
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)	CBSS-584.1.peg.1352	Clustering-based subsystems	a carboxypeptidase, a reductase, and a step from lysibe biosynthesis
FIG138056: a glutathione-dependent thiol reductase	CBSS-584.1.peg.1352	Clustering-based subsystems	a carboxypeptidase, a reductase, and a step from lysibe biosynthesis
Uncharacterized sugar kinase YegV, PfkB family	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
ADP-ribosylglycohydrolase YegU (EC 3.2.-.-)	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Putative nucleoside transporter YegT	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Uncharacterized HTH-type transcriptional regulator YegW	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Glycosyl hydrolase YegX, family 25	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Uncharacterized protein YohN precursor	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Uncharacterized protein YehA precursor	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Fimbriae usher protein StcC	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
Uncharacterized fimbrial chaperone YehC precursor	Unknown_carbohydrate_utilization_(_cluster_Yeg_)	Carbohydrates	
ABC transporter, ATP-binding protein EcsA	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
ABC transporter, permease protein EscB	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
EcsC protein	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
Foldase protein PrsA precursor (EC 5.2.1.8)	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
Hypothetical protein SAV1839	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
Protease production regulatory protein Hpr (ScoC)	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
Hypothetical protein in cluster with Ecs transporter (in Streptococci)	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
Hypothetical protein in cluster with Ecs transporter (in Lactococci)	EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins	Membrane Transport	Protein translocation across cytoplasmic membrane
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	CMP-N-acetylneuraminate_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylneuraminate synthase (EC 2.5.1.56)	CMP-N-acetylneuraminate_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43)	CMP-N-acetylneuraminate_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Sialic acid biosynthesis protein NeuD, O-acetyltransferase	CMP-N-acetylneuraminate_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
RNA-binding protein Hfq	Hfl_operon	Stress Response	
GTP-binding protein HflX	Hfl_operon	Stress Response	
HflK protein	Hfl_operon	Stress Response	
HflC protein	Hfl_operon	Stress Response	
Putative inner membrane protein YjeT (clustered with HflC)	Hfl_operon	Stress Response	
GTP-binding protein related to HflX	Hfl_operon	Stress Response	
FAD-dependent pyridine nucleotide-disulphide oxidoreductase, GBAA2537 homolog	CBSS-261594.1.peg.2640	Clustering-based subsystems	
Metal-dependent hydrolase COG0491 with rhodanese-homology domain (RHOD)	CBSS-261594.1.peg.2640	Clustering-based subsystems	
Hypothetical protein, sulfurtransferase domain	CBSS-261594.1.peg.2640	Clustering-based subsystems	
Protein of unknown function DUF156	CBSS-261594.1.peg.2640	Clustering-based subsystems	
Protein of unknown function DUF81, SAV0084 homolog	CBSS-261594.1.peg.2640	Clustering-based subsystems	
Putative phosphoesterase, GBAA2539 homolog	CBSS-261594.1.peg.2640	Clustering-based subsystems	
Hypothetical protein, GBAA2540 homolog	CBSS-261594.1.peg.2640	Clustering-based subsystems	
Threonine synthase (EC 4.2.3.1)	CBSS-436114.3.peg.833	Clustering-based subsystems	
FIG038648: MoaD and/or ThiS families	CBSS-436114.3.peg.833	Clustering-based subsystems	
IMP cyclohydrolase (EC 3.5.4.10)	CBSS-366602.3.peg.5141	Clustering-based subsystems	
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	CBSS-366602.3.peg.5141	Clustering-based subsystems	
Heparinase II/III-like	CBSS-366602.3.peg.5141	Clustering-based subsystems	
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-)	CBSS-366602.3.peg.5141	Clustering-based subsystems	
Hyaluronate lyase precursor (EC 4.2.2.1)	Hyaluronate_utilization		
Unsaturated glucuronyl hydrolase (EC 3.2.1.-)	Hyaluronate_utilization		
PTS system, hyaluronate-oligosaccharide-specific IIC component (EC 2.7.1.69)	Hyaluronate_utilization		
PTS system, hyaluronate-oligosaccharide-specific IIB component (EC 2.7.1.69)	Hyaluronate_utilization		
PTS system, hyaluronate-oligosaccharide-specific IID component (EC 2.7.1.69)	Hyaluronate_utilization		
PTS system, hyaluronate-oligosaccharide-specific IIA component (EC 2.7.1.69)	Hyaluronate_utilization		
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Hyaluronate_utilization		
predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Hyaluronate_utilization		
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Hyaluronate_utilization		
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Hyaluronate_utilization		
Oligohyaluronate lyase (EC 4.2.2.-)	Hyaluronate_utilization		
Transcriptional regulator RegR, rpressor of hyaluronate and KDG utilization	Hyaluronate_utilization		
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Hyaluronate_utilization		
ATP-dependent Clp protease ATP-binding subunit ClpX	Proteasome_bacterial	Protein Metabolism	Protein degradation
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Proteasome_bacterial	Protein Metabolism	Protein degradation
ATP-dependent hsl protease ATP-binding subunit HslU	Proteasome_bacterial	Protein Metabolism	Protein degradation
ATP-dependent protease HslV (EC 3.4.25.-)	Proteasome_bacterial	Protein Metabolism	Protein degradation
ATP-dependent protease La (EC 3.4.21.53) LonB Type I	Proteasome_bacterial	Protein Metabolism	Protein degradation
ATP-dependent protease La (EC 3.4.21.53) Type I	Proteasome_bacterial	Protein Metabolism	Protein degradation
Lon-like protease with PDZ domain	Proteasome_bacterial	Protein Metabolism	Protein degradation
Site-specific tyrosine recombinase	Proteasome_bacterial	Protein Metabolism	Protein degradation
ATP-dependent protease La (EC 3.4.21.53) Type II	Proteasome_bacterial	Protein Metabolism	Protein degradation
Uncharacterized protein, similar to the N-terminal domain of Lon protease	Proteasome_bacterial	Protein Metabolism	Protein degradation
ATP-dependent protease LonB-like Type I	Proteasome_bacterial	Protein Metabolism	Protein degradation
Prokaryotic ubiquitin-like protein Pup	Proteasome_bacterial	Protein Metabolism	Protein degradation
Citrate lyase beta chain (EC 4.1.3.6)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Citrate lyase alpha chain (EC 4.1.3.6)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Sensor kinase CitA, DpiB (EC 2.7.3.-)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Transcriptional regulatory protein CitB, DpiA	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (EC 2.7.8.25)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Citrate Succinate antiporter (TC 2.A.47.3.2)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Mg(2+) Citrate transporter (TC 2.A.11.1.1)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Ca(2+) Citrate symporter (TC 2.A.11.1.2)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Citrate lyase transcriptional regulator CitI	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Oxaloacetate decarboxylase involved in citrate fermentation (EC 4.1.1.3)	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Anaerobic C4-dicarboxylate transporter DcuC	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
Na(+)Citrate OH(-) antiporter	Citrate_Metabolism,_Transport,_and_Regulation	Carbohydrates	Organic acids
tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
tRNA (5-methoxyuridine) 34 synthase	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Shikimate 5-dehydrogenase (EC 1.1.1.25)	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Chorismate synthase (EC 4.2.3.5)	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
COG1801: Uncharacterized conserved protein	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Ubiquinone biosynthesis monooxygenase UbiB	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Phosphate starvation-inducible protein PhoH, predicted ATPase	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Iron-uptake factor PiuC	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Protein RtcB	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
COG1720: Uncharacterized conserved protein	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
COG1242: Predicted Fe-S oxidoreductase	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Gifsy-2 prophage protein	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
SAM-dependent methyltransferase, MraW methylase family (EC 2.1.1.-)	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	tRNA_cmo5U_synthesis	Experimental Subsystems	RNA processing and modification
Sensory box sensor histidine kinase/response regulator VieS	VieSAB_signal_transduction_system_of_Vibrio	Regulation and Cell signaling	Regulation of virulence
Response regulator VieA	VieSAB_signal_transduction_system_of_Vibrio	Regulation and Cell signaling	Regulation of virulence
Response regulator VieB	VieSAB_signal_transduction_system_of_Vibrio	Regulation and Cell signaling	Regulation of virulence
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Uptake hydrogenase large subunit (EC 1.12.99.6)	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase maturation protease (EC 3.4.24.-)	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Ni,Fe-hydrogenase I cytochrome b subunit	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase maturation factor hoxQ	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase maturation factor hoxL	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase maturation factor hoxO	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase maturation factor hoxR	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase maturation factor hoxT	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase maturation factor hoxV	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase nickel incorporation protein hypB	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase metallocenter assembly protein HypC	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Hydrogenase transcriptional regulatory protein hoxA	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
Signal transduction histidine kinase HoxJ (hydrogenase regulation)	Membrane-bound_Ni,_Fe-hydrogenase	Respiration	Electron donating reactions
DNA helicase (Rad25 homolog)	DNA_Helicase_of_Unknown_Function	DNA Metabolism	DNA replication
Hypothetical protein (associated with DNA helicase - Rad25 homolog)	DNA_Helicase_of_Unknown_Function	DNA Metabolism	DNA replication
Fructose-bisphosphate aldolase, archaeal class I (EC 4.1.2.13)	Fructose-bisphosphate_aldolase_protein_family	Experimental Subsystems	
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Fructose-bisphosphate_aldolase_protein_family	Experimental Subsystems	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Fructose-bisphosphate_aldolase_protein_family	Experimental Subsystems	
Fructose-bisphosphate aldolase (EC 4.1.2.13) homolog 2	Fructose-bisphosphate_aldolase_protein_family	Experimental Subsystems	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) homolog	Fructose-bisphosphate_aldolase_protein_family	Experimental Subsystems	
Fructose-bisphosphate aldolase (EC 4.1.2.13)	Fructose-bisphosphate_aldolase_protein_family	Experimental Subsystems	
Inner membrane protein YfiN	CBSS-208964.1.peg.1122	Clustering-based subsystems	
Integral membrane protein YfiB	CBSS-208964.1.peg.1122	Clustering-based subsystems	
Uncharacterized protein YfiR precursor	CBSS-208964.1.peg.1122	Clustering-based subsystems	
NADPH:quinone oxidoreductase 2	NADPH:quinone_oxidoreductase_2	Stress Response	Oxidative stress
Redox-sensing transcriptional regulator QorR	NADPH:quinone_oxidoreductase_2	Stress Response	Oxidative stress
Redox-sensing transcriptional regulator QorR, putative	NADPH:quinone_oxidoreductase_2	Stress Response	Oxidative stress
3-dehydroquinate synthase (EC 4.2.3.4)	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Fimbrial assembly protein FimB	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Leader peptidase (Prepilin peptidase) (EC 3.4.23.43)	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
N-methyltransferase (EC 2.1.1.-)	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
PilS cassette	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Twitching motility protein PilT	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial assembly protein PilC	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial assembly, ATPase PilB	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial biogenesis protein FimT	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial biogenesis protein PilV	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial biogenesis protein PilW	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial biogenesis protein PilX	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial biogenesis protein PilY1	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV pilus biogenesis protein PilE	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV pilus biogenesis protein PilM	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV pilus biogenesis protein PilN	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV pilus biogenesis protein PilO	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV pilus biogenesis protein PilP	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV pilus biogenesis protein PilQ	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Two-component sensor PilS	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbriae expression regulatory protein PilR	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV pilin PilA	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
type 4 fimbrial biogenesis protein FimU	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Type IV fimbrial biogenesis protein PilY2	Type_IV_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Copper chaperone	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper-translocating P-type ATPase (EC 3.6.3.4)	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cu(I)-responsive transcriptional regulator	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytochrome c family protein	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytochrome c heme lyase subunit CcmF	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytochrome c heme lyase subunit CcmH	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytochrome c heme lyase subunit CcmL	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytochrome c-type biogenesis protein CcmE, heme chaperone	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
DNA-binding heavy metal response regulator	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
ErfK/YbiS/YcfS/YnhG family protein	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Heavy metal sensor histidine kinase	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multicopper oxidase	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug resistance transporter, Bcr/CflA family	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
CopG protein	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper resistance protein B	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper resistance protein C precursor	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper resistance protein D	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper sensory histidine kinase CusS	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper tolerance protein	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper-sensing two-component system response regulator CusR	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FIG002261: Cytochrome c family protein	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FIG135464: Cytochrome c4	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Putative diheme cytochrome c-553	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcriptional activator protein CopR	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Negative transcriptional regulator-copper transport operon	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Blue copper oxidase CueO precursor	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Sensor protein copS (EC 2.7.3.-)	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
putative cytochrome C-like protein	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper-binding periplasmic protein	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase	Copper_homeostasis	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Phosphoenolpyruvate phosphomutase (EC 5.4.2.9)	Phosphoenolpyruvate_phosphomutase	Phosphorus Metabolism	
Phosphonopyruvate decarboxylase (EC 4.1.1.82)	Phosphoenolpyruvate_phosphomutase	Phosphorus Metabolism	
2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	Phosphoenolpyruvate_phosphomutase	Phosphorus Metabolism	
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase	Phosphoenolpyruvate_phosphomutase	Phosphorus Metabolism	
Retron-type reverse transcriptase	Group_II_intron-associated_genes	RNA Metabolism	
TRAP transporter solute receptor, TAXI family precursor, unknown substrate 2	TRAP_Transporter_unknown_substrate_2	Experimental Subsystems	
TRAP transporter, 4TM/12TM fusion protein, unknown substrate 2	TRAP_Transporter_unknown_substrate_2	Experimental Subsystems	
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	Translation_initiation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation initiation factor 1	Translation_initiation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation initiation factor 2	Translation_initiation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Ribosome-binding factor A	Translation_initiation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation initiation factor 3	Translation_initiation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation initiation factor SUI1-related protein	Translation_initiation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation initiation factor 3 related protein	Translation_initiation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Segregation and condensation protein A	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Segregation and condensation protein B	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Chromosome (plasmid) partitioning protein ParA	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Chromosome (plasmid) partitioning protein ParB	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Chromosome (plasmid) partitioning protein ParB-2	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Chromosome partition protein smc	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Ribonuclease III (EC 3.1.26.3)	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Signal recognition particle associated protein	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
Pseudouridine synthase family protein	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
DMSP breakdown hydrolase protein	DMSP_breakdown	Sulfur Metabolism	Organic sulfur assimilation
DMSP demethylase (DmdA) (EC 2.1.2.10)	DMSP_breakdown	Sulfur Metabolism	Organic sulfur assimilation
Fosfomycin resistance protein FosB	Fosfomycin_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Fosfomycin resistance protein FosX	Fosfomycin_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Fosfomycin resistance protein FosA	Fosfomycin_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Putative peptidoglycan bound protein (LPXTG motif) LMOf2365_1974 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lin2281 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0159 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0160 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0175 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0320 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0463 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0550 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0627 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0835 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0842 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo0880 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo1413 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo1666 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo1799 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo2085 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo2179 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative peptidoglycan bound protein (LPXTG motif) Lmo2714 homolog	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
Sortase	Listeria_surface_proteins:_LPXTG_motif	Virulence, Disease and Defense	Invasion and intracellular resistance
FIG032766: hypothetical protein	CBSS-374931.9.peg.1048	Clustering-based subsystems	
FIG001353: Acetyltransferase	CBSS-374931.9.peg.1048	Clustering-based subsystems	
FIG015373: Membrane protein	CBSS-521098.4.peg.1460	Clustering-based subsystems	
FIG001614: Membrane protein	CBSS-521098.4.peg.1460	Clustering-based subsystems	
Potassium uptake protein TrkH	Cluster_co-expressed_with_butyrate_metabolism_cluster	Clustering-based subsystems	
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Cluster_co-expressed_with_butyrate_metabolism_cluster	Clustering-based subsystems	
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)	Cluster_co-expressed_with_butyrate_metabolism_cluster	Clustering-based subsystems	
FIG000605: protein co-occurring with transport systems (COG1739)	Cluster_co-expressed_with_butyrate_metabolism_cluster	Clustering-based subsystems	
ATP phosphoribosyltransferase (EC 2.4.2.17)	Histidine_transporter_and_regulator		
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Histidine_transporter_and_regulator		
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Histidine_transporter_and_regulator		
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Histidine_transporter_and_regulator		
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Histidine_transporter_and_regulator		
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidine_transporter_and_regulator		
His repressor	Histidine_transporter_and_regulator		
Histidine permease YuiF	Histidine_transporter_and_regulator		
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Histidine_transporter_and_regulator		
Urocanate hydratase (EC 4.2.1.49)	Histidine_transporter_and_regulator		
Histidine ammonia-lyase (EC 4.3.1.3)	Histidine_transporter_and_regulator		
Imidazolonepropionase (EC 3.5.2.7)	Histidine_transporter_and_regulator		
Histidine transport protein (permease)	Histidine_transporter_and_regulator		
Ubiquitin-like small archaeal modifier protein SAMP1	Ubiquitin-like_archaeal_modifier_proteins_(SAMPs)	Protein Metabolism	Protein processing and modification
Ubiquitin-like small archaeal modifier protein SAMP2	Ubiquitin-like_archaeal_modifier_proteins_(SAMPs)	Protein Metabolism	Protein processing and modification
HesA/MoeB/ThiF family protein, possibly E1-enzyme activating SAMPs for protein conjugation	Ubiquitin-like_archaeal_modifier_proteins_(SAMPs)	Protein Metabolism	Protein processing and modification
SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA	Sugar-phosphate_stress_regulation	Stress Response	
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
F420-dependent methylenetetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	One-carbon_metabolism_by_tetrahydropterines	Carbohydrates	One-carbon Metabolism
Beta-lactamase, class C	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
C3-degrading proteinase	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Aquaporin (Major Intrinsic Protein Family)	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Pyruvate formate-lyase (EC 2.3.1.54)	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11)	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Drug/metabolite transporter (DMT) superfamily protein	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
RecD-like DNA helicase YrrC	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Transcriptional regulator in cluster with beta-lactamase, GntR family	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Hydrolase in cluster with beta-lactamase (HAD superfamily)	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Putative membrane protein precursor SPs0273	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
Putative signal peptidase I (EC 3.4.21.89)	Beta-lactamase_cluster_in_Streptococcus	Clustering-based subsystems	Carbohydrates
TRAP transporter solute receptor, unknown substrate 8	TRAP_Transporter_unknown_substrate_8	Experimental Subsystems	
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 8	TRAP_Transporter_unknown_substrate_8	Experimental Subsystems	
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 8	TRAP_Transporter_unknown_substrate_8	Experimental Subsystems	
CTP synthase (EC 6.3.4.2)	CTP_synthase_(EC_6.3.4.2)_cluster	Clustering-based subsystems	
Inner membrane protein translocase component YidC, long form	CTP_synthase_(EC_6.3.4.2)_cluster	Clustering-based subsystems	
ATP-dependent DNA ligase (EC 6.5.1.1)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Endonuclease III (EC 4.2.99.18)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Flap structure-specific endonuclease (EC 3.-.-.-)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
DNA ligase (EC 6.5.1.2)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
DNA polymerase I (EC 2.7.7.7)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Ku domain protein	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
DNA-3-methyladenine glycosylase (EC 3.2.2.20)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Exodeoxyribonuclease I (EC 3.1.11.1)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Uracil-DNA glycosylase, family 1	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
ATP-dependent DNA ligase (EC 6.5.1.1) LigC	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
DNA polymerase II (EC 2.7.7.7)	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Endonuclease VIII	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog	DNA_Repair_Base_Excision	DNA Metabolism	DNA repair
Putative deoxyribonuclease YcfH	YcfH	DNA Metabolism	
Putative deoxyribonuclease YjjV	YcfH	DNA Metabolism	
Deoxyribonuclease TatD	YcfH	DNA Metabolism	
Putative deoxyribonuclease similar to YcfH, type 2	YcfH	DNA Metabolism	
Putative deoxyribonuclease similar to YcfH, type 3	YcfH	DNA Metabolism	
Putative deoxyribonuclease similar to YcfH, type 4	YcfH	DNA Metabolism	
Putative deoxyribonuclease similar to YcfH, type 5	YcfH	DNA Metabolism	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Serine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine phosphatase (EC 3.1.3.3)	Serine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Serine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase (EC 2.6.1.52)	Serine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase, putative (EC 2.6.1.52)	Serine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase 1 (EC 2.1.2.1)	Serine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
IncF plasmid conjugative transfer pilus assembly protein TraB	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer protein TraV	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraE	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraL	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraK	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraC	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer protein TraD	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Thiol:disulfide involved in conjugative transfer	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer protein TraA	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative signal peptidase TrhF	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer protein TraI, relaxase	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer protein s043	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraW	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraH	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer protein TraN	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer protein 234	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraF	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer pilus assembly protein TraU	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer protein 345	Conjugative_transfer_related_cluster	Clustering-based subsystems	
DNA topoisomerase III (EC 5.99.1.2)	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer protein TraG	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Periplasmic thiol:disulfide interchange protein DsbA	Conjugative_transfer_related_cluster	Clustering-based subsystems	
FIG003465: Conjugative transfer outer membrane protein	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncF plasmid conjugative transfer protein TrbC	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer transglycosylase	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer ATP binding protein	Conjugative_transfer_related_cluster	Clustering-based subsystems	
IncW plasmid conjugative relaxase protein TrwC (TraI homolog)	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Conjugative transfer protein 123	Conjugative_transfer_related_cluster	Clustering-based subsystems	
Nucleoside permease NupC	Xanthine_Metabolism_in_Bacteria	Nucleosides and Nucleotides	Purines
Xanthine permease	Xanthine_Metabolism_in_Bacteria	Nucleosides and Nucleotides	Purines
Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Xanthine_Metabolism_in_Bacteria	Nucleosides and Nucleotides	Purines
Hypoxanthine/guanine permease PbuG	Xanthine_Metabolism_in_Bacteria	Nucleosides and Nucleotides	Purines
Lacto-N-biose phosphorylase (EC 2.4.1.211)	Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	Carbohydrates	
UDP-glucose 4-epimerase (EC 5.1.3.2)	Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	Carbohydrates	
N-acetylhexosamine 1-kinase	Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	Carbohydrates	
UDP-glucose hexose 1-phosphate uridylyltransferase	Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	Carbohydrates	
Predicted galacto-N-biose-/lacto-N-biose I ABC transporter, periplasmic substrate-binding protein	Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	Carbohydrates	
Predicted galacto-N-biose-/lacto-N-biose I ABC transporter, permease component 1	Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	Carbohydrates	
Predicted galacto-N-biose-/lacto-N-biose I ABC transporter, permease component 2	Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	Carbohydrates	
Substrate-specific component BioY of biotin ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component MtsA of methionine-regulated ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component RibU of riboflavin ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component ThiT of thiamin ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component SCO2325 of predicted cobalamin ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component TrpP of tryptophan ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component NikM of nickel ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component CbiM of cobalt ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component PanT of predicted pantothenate ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component FolT of folate ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component HmpT of predicted thiamin-related ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Additional substrate-specific component CbiN of cobalt ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Additional substrate-specific component NikN of nickel ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component BL0695 of predicted ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component NiaX of predicted niacin ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component ThiW of predicted thiazole ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component PdxT of predicted pyridoxine ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component PAM0308 of predicted lipoate ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Substrate-specific component TTE1586 of predicted methylthioadenosine ECF transporter	ECF_S-components_-_Experimental	Experimental Subsystems	
Energy conserving hydrogenase Eha associated gene 2	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated polyferredoxin	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha ferredoxin (protein P2)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha large subunit homolog (protein O)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin (protein P3)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha protein M	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha proton-sodium antiporter homolog protein H	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha small subunit homolog (protein N)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein A	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein B	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein C	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein D	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein E	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein F	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein G	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein I2	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein J	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein K2	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein L	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha-associated regulator	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb anchor subunit F	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb ferredoxin-containing protein L	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb integral membrane protein O	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb large subunit (protein N)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb polyferredoxin (protein K)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein A	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein B	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein C	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein D	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein G	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein H	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein I	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein J	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein P	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein Q	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb small subunit (protein M)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb transmembrane protein E	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein (protein R)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein (protein S)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein, ribokinase homolog (protein T)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin (protein P)	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin domain (protein P')	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein I	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein K	Archaeal_membrane_bound_hydrogenases	Respiration	Reverse electron transport
Legionaminic acid cytidylyltransferase (EC 2.7.7.43)	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Legionaminic acid biosynthesis protein PtmG	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Legionaminic acid biosynthesis protein PtmF	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Legionaminic acid biosynthesis protein PtmA	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Legionaminic acid synthase (EC 2.5.1.56)	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-Bac2Ac4Ac hydrolyzing 2-epimerase NeuC homolog	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Bacillosamine/Legionaminic acid biosynthesis N-acetyltrasferase PglD (PseH and NeuD homolog)	Legionaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
FIG002958: hypothetical protein	Hypothetical_Coupled_to_RecF	Clustering-based subsystems	Hypothetical associated with RecF
DNA recombination and repair protein RecF	Hypothetical_Coupled_to_RecF	Clustering-based subsystems	Hypothetical associated with RecF
Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism	MukBEF_Chromosome_Condensation	Cell Division and Cell Cycle	
S-adenosylmethionine-dependent methyltransferase Functionally Coupled to the MukBEF Chromosome Partitioning Mechanism	MukBEF_Chromosome_Condensation	Cell Division and Cell Cycle	
Chromosome partition protein MukF	MukBEF_Chromosome_Condensation	Cell Division and Cell Cycle	
Chromosome partition protein MukE	MukBEF_Chromosome_Condensation	Cell Division and Cell Cycle	
Chromosome partition protein MukB	MukBEF_Chromosome_Condensation	Cell Division and Cell Cycle	
Hexose phosphate transport protein UhpT	Hexose_Phosphate_Uptake_System	Carbohydrates	Monosaccharides
Hexose phosphate uptake regulatory protein UhpC	Hexose_Phosphate_Uptake_System	Carbohydrates	Monosaccharides
Sensor histidine protein kinase UhpB, glucose-6-phosphate specific (EC 2.7.13.3)	Hexose_Phosphate_Uptake_System	Carbohydrates	Monosaccharides
Transcriptional regulatory protein UhpA	Hexose_Phosphate_Uptake_System	Carbohydrates	Monosaccharides
Homolog of fucose/glucose/galactose permeases	Hexose_Phosphate_Uptake_System	Carbohydrates	Monosaccharides
Preprotein translocase SecY2 subunit (TC 3.A.5.1.1)	SecY2-SecA2_Specialized_Transport_System	Membrane Transport	Protein translocation across cytoplasmic membrane
Poly(glycerol-phosphate) alpha-glucosyltransferase GftA (EC 2.4.1.52)	SecY2-SecA2_Specialized_Transport_System	Membrane Transport	Protein translocation across cytoplasmic membrane
Accessory secretory protein Asp2	SecY2-SecA2_Specialized_Transport_System	Membrane Transport	Protein translocation across cytoplasmic membrane
Protein export cytoplasm protein SecA2 ATPase RNA helicase (TC 3.A.5.1.1)	SecY2-SecA2_Specialized_Transport_System	Membrane Transport	Protein translocation across cytoplasmic membrane
GftB: Glycosyl transferase, family 8	SecY2-SecA2_Specialized_Transport_System	Membrane Transport	Protein translocation across cytoplasmic membrane
Accessory secretory protein Asp1	SecY2-SecA2_Specialized_Transport_System	Membrane Transport	Protein translocation across cytoplasmic membrane
Accessory secretory protein Asp3	SecY2-SecA2_Specialized_Transport_System	Membrane Transport	Protein translocation across cytoplasmic membrane
UPF0246 protein YaaA	YaaA	Miscellaneous	
GltC, transcription activator of glutamate synthase operon	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator STM2281	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Hydrogen peroxide-inducible genes activator	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Alkanesulfonate utilization operon LysR-family regulator CbI	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YcjZ	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YnfL	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator lrhA	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Nitrogen assimilation regulatory protein Nac	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Transcriptional activator protein LysR	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Xanthosine operon regulatory protein XapR, LysR family	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Cyn operon transcriptional activator	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA0133	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA2877	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YfeR	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family)	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA0191	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA3398	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA4989	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA5218	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA5437	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YbhD	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YneJ	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Transcriptional regulator GbuR	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator STM3121	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Cys regulon transcriptional activator CysB	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA0739	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA1145	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator PA2758	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Transcriptional activator GpuR	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YdcI	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YfiE	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
LysR family transcriptional regulator YhjC	DNA-binding_regulatory_proteins,_strays	Regulation and Cell signaling	
Alkanesulfonates-binding protein	Alkanesulfonates_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Alkanesulfonates ABC transporter ATP-binding protein	Alkanesulfonates_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Alkanesulfonates transport system permease protein	Alkanesulfonates_Utilization	Sulfur Metabolism	Organic sulfur assimilation
Alkanesulfonate monooxygenase (EC 1.14.14.5)	Alkanesulfonates_Utilization	Sulfur Metabolism	Organic sulfur assimilation
FMN reductase (EC 1.5.1.29)	Alkanesulfonates_Utilization	Sulfur Metabolism	Organic sulfur assimilation
SSU ribosomal protein S12p (S23e)	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)	Virulence	
SSU ribosomal protein S7p (S5e)	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)	Virulence	
Translation elongation factor G	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)	Virulence	
Translation elongation factor Tu	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)	Virulence	
FIG025093: Probable membrane protein	Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)	Virulence	
6- phosphofructo-2-kinase (EC 2.7.1.105) / Fructose-2,6-bisphosphatase (EC 3.1.3.46)	CR_clusters_Euk_2	Experimental Subsystems	
regulator of Fas-induced apoptosis	CR_clusters_Euk_2	Experimental Subsystems	
Interleukin-24 precursor	CR_clusters_Euk_2	Experimental Subsystems	
C4b-binding protein alpha chain precursor	CR_clusters_Euk_2	Experimental Subsystems	
Hshin7 protein	CR_clusters_Euk_2	Experimental Subsystems	
Specifically androgen-regulated protein	CR_clusters_Euk_2	Experimental Subsystems	
CI-like repressor, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Cro-like repressor, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Heat shock protein 60 family chaperone GroEL	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAR0365 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAR0369 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0787 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0788 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0789 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0790 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0791 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0792 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0793 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0794 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0795 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0796 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0797 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0798 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0799 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0808 homolog, near pathogenicity islands SaPI att-site	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Integrase, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Methionine ABC transporter substrate-binding protein	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Putative terminase, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
SSU ribosomal protein S18p	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Secreted protein Ear, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Superantigen enterotoxin SEB	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Superantigen enterotoxin SEK	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Superantigen enterotoxin SEL	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
tmRNA-binding protein SmpB	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAR0371 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAR0372 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAR0385 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0801 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Putative DNA helicase, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxic shock syndrome toxin 1 (TSST-1)	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Ferrichrome-binding periplasmic protein precursor in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV0786 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV2026 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical SAV2027 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Degenerate integrase, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical MW0753 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Hypothetical MW0754 homolog in superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Putative primase, superantigen-encoding pathogenicity islands SaPI	Staphylococcal_pathogenicity_islands_SaPI	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
DNA ligase (EC 6.5.1.2)	CBSS-393121.3.peg.1913	Clustering-based subsystems	
ATP-dependent DNA helicase UvrD/PcrA	CBSS-393121.3.peg.1913	Clustering-based subsystems	
(S)-3-O-geranylgeranylglyceryl phosphate synthase	CBSS-393121.3.peg.1913	Clustering-based subsystems	
His repressor	CBSS-393121.3.peg.1913	Clustering-based subsystems	
ATP-dependent DNA helicase pcrA (EC 3.6.1.-)	CBSS-393121.3.peg.1913	Clustering-based subsystems	
Lin1875 protein	CBSS-393121.3.peg.1913	Clustering-based subsystems	
FIG000605: protein co-occurring with transport systems (COG1739)	CBSS-224308.1.peg.3555	Clustering-based subsystems	
Transcriptional regulator DegU, LuxR family	CBSS-224308.1.peg.3555	Clustering-based subsystems	
FIG005590: DegV family protein	CBSS-224308.1.peg.3555	Clustering-based subsystems	
Sensor protein DegS	CBSS-224308.1.peg.3555	Clustering-based subsystems	
FIG009148: Acetyltransferase, GNAT family	CBSS-224308.1.peg.3555	Clustering-based subsystems	
Competence-stimulating peptide ABC transporter ATP-binding protein ComA	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Competence-stimulating peptide ABC transporter permease protein ComB	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Histidine kinase of the competence regulon ComD	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Response regulator of the competence regulon ComE	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Competence-specific sigma factor ComX	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Transcriptional regulator SpxA1	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Transcriptional regulator SpxA2	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Competence-stimulating peptide (CSP) precursor ComC	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Competence positive regulator ComW	Competence_in_Streptococci	DNA Metabolism	DNA uptake, competence
Regulatory protein RecX	RecA_and_RecX	DNA Metabolism	DNA repair
RecA protein	RecA_and_RecX	DNA Metabolism	DNA repair
Cytidine deaminase (EC 3.5.4.5)	Nucleoside_Catabolism_cluster	Clustering-based subsystems	
D-Ribose 1,5-phosphomutase (EC 5.4.2.7)	Nucleoside_Catabolism_cluster	Clustering-based subsystems	
Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Nucleoside_Catabolism_cluster	Clustering-based subsystems	
Purine nucleoside phosphorylase (EC 2.4.2.1)	Nucleoside_Catabolism_cluster	Clustering-based subsystems	
Thymidine phosphorylase (EC 2.4.2.4)	Nucleoside_Catabolism_cluster	Clustering-based subsystems	
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Nucleoside_Catabolism_cluster	Clustering-based subsystems	
GTP cyclohydrolase III (methanopterin)	methanopterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
7,8 dihydropteroate synthase (methanopterin)	methanopterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
beta-ribofuranosylaminobenzene 5'-phosphate synthase	methanopterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Putative uncharacterized protein ydbH	CBSS-314225.3.peg.1533	Clustering-based subsystems	May be related to amine metabolism
Uncharacterized protein ynbE	CBSS-314225.3.peg.1533	Clustering-based subsystems	May be related to amine metabolism
probable lipoprotein STY1424	CBSS-314225.3.peg.1533	Clustering-based subsystems	May be related to amine metabolism
Putative uncharacterized protein ydbL, may be related to amine metabolism	CBSS-314225.3.peg.1533	Clustering-based subsystems	May be related to amine metabolism
Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate transport system permease protein CysW	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate transport system permease protein CysT	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate and thiosulfate binding protein CysP	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate-binding protein Sbp	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate permease, Trk-type	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate transporter, CysZ-type	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Putative sulfate permease	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Adenylylsulfate kinase (EC 2.7.1.25)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Serine acetyltransferase (EC 2.3.1.30)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Cysteine synthase (EC 2.5.1.47)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Cysteine synthase B (EC 2.5.1.47)	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Cys regulon transcriptional activator CysB	Sulfate_Assimilation_Shewanella	Experimental Subsystems	
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)	CBSS-266117.6.peg.1260	Clustering-based subsystems	
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	CBSS-266117.6.peg.1260	Clustering-based subsystems	
FUPA29 P-type ATPase	Family_29_FUPA29_P-type_ATPase		
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion	Family_29_FUPA29_P-type_ATPase		
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) / Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Family_29_FUPA29_P-type_ATPase		
putative: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Family_29_FUPA29_P-type_ATPase		
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Family_29_FUPA29_P-type_ATPase		
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation	Family_29_FUPA29_P-type_ATPase		
cytochrome cbb3 oxidase maturation protein CcoH	Family_29_FUPA29_P-type_ATPase		
Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein	Family_29_FUPA29_P-type_ATPase		
transcriptional regulator, Crp/Fnr family	Family_29_FUPA29_P-type_ATPase		
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Family_29_FUPA29_P-type_ATPase		
Universal stress protein UspA and related nucleotide-binding proteins	Family_29_FUPA29_P-type_ATPase		
2x Universal stress protein A (2UspA)	Family_29_FUPA29_P-type_ATPase		
putative cardiolipin synthetase	Family_29_FUPA29_P-type_ATPase		
Indigoidine synthase A-like protein, uncharacterized enzyme involved in pigment biosynthesis	CBSS-176299.3.peg.235	Clustering-based subsystems	Pigment biosynthesis
Hypothetical sugar kinase in cluster with indigoidine synthase indA , PfkB family of kinases	CBSS-176299.3.peg.235	Clustering-based subsystems	Pigment biosynthesis
Probable pyrimidine nucleoside transport protein	CBSS-176299.3.peg.235	Clustering-based subsystems	Pigment biosynthesis
Uncharacterized sugar kinase yeiI clustered with IndA	CBSS-176299.3.peg.235	Clustering-based subsystems	Pigment biosynthesis
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Enoyl-CoA hydratase (EC 4.2.1.17)	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
enoyl-CoA hydratase, R-specific	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8)	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative 3-hydroxyacyl-coa dehydrogenase	n-Phenylalkanoic_acid_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Choline kinase (EC 2.7.1.32)	Phosphorylcholine_incorporation_in_LPS	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Choline permease LicB	Phosphorylcholine_incorporation_in_LPS	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Cholinephosphate cytidylyltransferase (EC 2.7.7.15)	Phosphorylcholine_incorporation_in_LPS	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Lipopolysaccharide cholinephosphotransferase LicD1 (EC 2.7.8.-)	Phosphorylcholine_incorporation_in_LPS	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Lipopolysaccharide cholinephosphotransferase LicD2 (EC 2.7.8.-)	Phosphorylcholine_incorporation_in_LPS	Cell Wall and Capsule	Capsular and extracellular polysacchrides
3-dehydroquinate dehydratase II (EC 4.2.1.10)	Quinate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
3-dehydroquinate dehydratase I (EC 4.2.1.10)	Quinate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	Quinate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)	Quinate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
3-dehydroshikimate dehydratase	Quinate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Shikimate 5-dehydrogenase (EC 1.1.1.25)	Quinate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Eukaryotic translation initiation factor 2 alpha subunit	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Eukaryotic translation initiation factor 2 beta subunit	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Eukaryotic translation initiation factor 2 gamma subunit	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Eukaryotic translation initiation factor 5A	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Eukaryotic translation initiation factor 6	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation initiation factor 1A	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation initiation factor 2	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation initiation factor 2B alpha/beta/delta-type subunit	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation initiation factor SUI1-related protein	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation initiation factor 2B alpha subunit	Translation_initiation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
N-acetylmuramoyl-L-alanine amidase	Bacterial_Endolysins:_autolysins,_phage,_and_phage-like_lysins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysin	Bacterial_Endolysins:_autolysins,_phage,_and_phage-like_lysins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage-associated cell wall hydrolase	Bacterial_Endolysins:_autolysins,_phage,_and_phage-like_lysins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Peptidoglycan hydrolase, Autolysin1 (EC 3.5.1.28)	Bacterial_Endolysins:_autolysins,_phage,_and_phage-like_lysins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Peptidoglycan hydrolase, Autolysin2 (EC 3.5.1.28)	Bacterial_Endolysins:_autolysins,_phage,_and_phage-like_lysins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Division initiation protein	CBSS-227882.1.peg.6980	Clustering-based subsystems	
FIG030330: hypothetical protein	CBSS-227882.1.peg.6980	Clustering-based subsystems	
FIG025307: hypothetical protein	CBSS-227882.1.peg.6980	Clustering-based subsystems	
Cell division protein FtsQ	CBSS-227882.1.peg.6980	Clustering-based subsystems	
YLXX protein	CBSS-227882.1.peg.6980	Clustering-based subsystems	
Histidine kinase in an arabinose sensing sensor	An_Arabinose_Sensor	Arabinose Sensor and transport module	Arabinose
Arabinose sensor protein	An_Arabinose_Sensor	Arabinose Sensor and transport module	Arabinose
Response regulator for an arabinose sensor	An_Arabinose_Sensor	Arabinose Sensor and transport module	Arabinose
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	An_Arabinose_Sensor	Arabinose Sensor and transport module	Arabinose
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	An_Arabinose_Sensor	Arabinose Sensor and transport module	Arabinose
L-arabinose transport system permease protein (TC 3.A.1.2.2)	An_Arabinose_Sensor	Arabinose Sensor and transport module	Arabinose
Transcriptional repressor of arabinoside utilization operon, GntR family	An_Arabinose_Sensor	Arabinose Sensor and transport module	Arabinose
Hemolysin III	Streptococcus_agalactiae_virulome	Virulence	
Streptokinase B	Streptococcus_agalactiae_virulome	Virulence	
Polysaccharide biosynthesis protein CpsF	Streptococcus_agalactiae_virulome	Virulence	
Glycosyl transferase CpsG	Streptococcus_agalactiae_virulome	Virulence	
Exopolysaccharide biosynthesis transcriptional activator EpsA	Streptococcus_agalactiae_virulome	Virulence	
Tyrosine-protein phosphatase CpsB (EC 3.1.3.48)	Streptococcus_agalactiae_virulome	Virulence	
Tyrosine-protein kinase transmembrane modulator EpsC	Streptococcus_agalactiae_virulome	Virulence	
Tyrosine-protein kinase EpsD (EC 2.7.10.2)	Streptococcus_agalactiae_virulome	Virulence	
Galactosyl transferase CpsE (EC 2.7.8.-)	Streptococcus_agalactiae_virulome	Virulence	
Polysaccharide biosynthesis glycosyl transferase CpsJ	Streptococcus_agalactiae_virulome	Virulence	
N-acetylneuraminate synthase (EC 2.5.1.56)	Streptococcus_agalactiae_virulome	Virulence	
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	Streptococcus_agalactiae_virulome	Virulence	
Capsular polysaccharide repeating-unit polymerase CpsH	Streptococcus_agalactiae_virulome	Virulence	
Capsular polysaccharide biosythesis protein CpsI	Streptococcus_agalactiae_virulome	Virulence	
Capsular polysaccharide biosynthesis protein CpsK(V)	Streptococcus_agalactiae_virulome	Virulence	
Capsular polysaccharide repeat unit transporter CpsL	Streptococcus_agalactiae_virulome	Virulence	
Major structural subunit of bundle-forming pilus precursor Bundlin BfpA	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Outer membrane lipoprotein BfpB	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpF	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus lipoprotein BfpH	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpC	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming prepilin peptidase BfpP	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus transmembrane protein BfpE	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpD	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpU	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus lipoprotein BfpG	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpL	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpK	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpM	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus protein BfpJ	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Bundle-forming pilus prepilin BfpI	Bundle-forming_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
FIG000906: Predicted Permease	CBSS-208964.1.peg.3826	Clustering-based subsystems	Permease proteins, subunit of DNA pol, and the Val-tRNA synthetase
FIG000988: Predicted permease	CBSS-208964.1.peg.3826	Clustering-based subsystems	Permease proteins, subunit of DNA pol, and the Val-tRNA synthetase
Cytosol aminopeptidase PepA (EC 3.4.11.1)	CBSS-208964.1.peg.3826	Clustering-based subsystems	Permease proteins, subunit of DNA pol, and the Val-tRNA synthetase
DNA polymerase III chi subunit (EC 2.7.7.7)	CBSS-208964.1.peg.3826	Clustering-based subsystems	Permease proteins, subunit of DNA pol, and the Val-tRNA synthetase
Valyl-tRNA synthetase (EC 6.1.1.9)	CBSS-208964.1.peg.3826	Clustering-based subsystems	Permease proteins, subunit of DNA pol, and the Val-tRNA synthetase
ATP phosphoribosyltransferase (EC 2.4.2.17)	XXBOB2	Experimental Subsystems	
ATP-binding protein PhnN	Alkylphosphonate_utilization	Phosphorus Metabolism	
Alkylphosphonate utilization operon protein PhnA	Alkylphosphonate_utilization	Phosphorus Metabolism	
Metal-dependent hydrolase involved in phosphonate metabolism	Alkylphosphonate_utilization	Phosphorus Metabolism	
PhnB protein	Alkylphosphonate_utilization	Phosphorus Metabolism	
PhnG protein	Alkylphosphonate_utilization	Phosphorus Metabolism	
PhnH protein	Alkylphosphonate_utilization	Phosphorus Metabolism	
PhnI protein	Alkylphosphonate_utilization	Phosphorus Metabolism	
PhnJ protein	Alkylphosphonate_utilization	Phosphorus Metabolism	
PhnO protein	Alkylphosphonate_utilization	Phosphorus Metabolism	
Phosphonates transport ATP-binding protein PhnK	Alkylphosphonate_utilization	Phosphorus Metabolism	
Phosphonates transport ATP-binding protein PhnL	Alkylphosphonate_utilization	Phosphorus Metabolism	
Protein RcsF	Alkylphosphonate_utilization	Phosphorus Metabolism	
Transcriptional regulator PhnF	Alkylphosphonate_utilization	Phosphorus Metabolism	
Chloramphenicol acetyltransferase (EC 2.3.1.28)	Alkylphosphonate_utilization	Phosphorus Metabolism	
Threonine catabolic operon transcriptional activator TdcR	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine catabolic operon transcriptional activator TdcA	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine dehydratase, catabolic (EC 4.3.1.19)	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-threonine transporter, anaerobically inducible	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Propionate kinase (EC 2.7.2.15)	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2-ketobutyrate formate-lyase (EC 2.3.1.-)	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Serine transporter	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Phosphate acetyltransferase (EC 2.3.1.8)	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Acetate kinase (EC 2.7.2.1)	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Pyruvate formate-lyase (EC 2.3.1.54)	Threonine_anaerobic_catabolism_gene_cluster	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
FIG041371: hypothetical protein, Rv1738/MT1780	Mycobacterium_virulence_operon_involved_with_nitrate_dormancy_regulon	Virulence	
Nitrate/nitrite transporter co-occurring with respiratory nitrate reductase	Mycobacterium_virulence_operon_involved_with_nitrate_dormancy_regulon	Virulence	
Respiratory nitrate reductase NarX	Mycobacterium_virulence_operon_involved_with_nitrate_dormancy_regulon	Virulence	
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Pectin_degradation	Experimental Subsystems	
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Pectin_degradation	Experimental Subsystems	
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Pectin_degradation	Experimental Subsystems	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Pectin_degradation	Experimental Subsystems	
Pectin degradation protein KdgF	Pectin_degradation	Experimental Subsystems	
Exopolygalacturonate lyase (EC 4.2.2.9)	Pectin_degradation	Experimental Subsystems	
predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Pectin_degradation	Experimental Subsystems	
Pectate lyase precursor (EC 4.2.2.2)	Pectin_degradation	Experimental Subsystems	
Hypothetical protein ortholog to Borrelia burgdorferi BB0467	A_cluster_in_Borrelia_probably_related_to_lipoprotein_export	Cell Wall and Capsule	Gram-Negative cell wall components
Hypothetical protein ortholog to Borrelia burgdorferi BB0468	A_cluster_in_Borrelia_probably_related_to_lipoprotein_export	Cell Wall and Capsule	Gram-Negative cell wall components
Hypothetical protein ortholog to Borrelia burgdorferi BB0465	A_cluster_in_Borrelia_probably_related_to_lipoprotein_export	Cell Wall and Capsule	Gram-Negative cell wall components
Lipoprotein signal peptidase (EC 3.4.23.36)	A_cluster_in_Borrelia_probably_related_to_lipoprotein_export	Cell Wall and Capsule	Gram-Negative cell wall components
ABC transporter, ATP-binding protein, ortholog to Borrelia burgdorferi BB0466	A_cluster_in_Borrelia_probably_related_to_lipoprotein_export	Cell Wall and Capsule	Gram-Negative cell wall components
Hypothetical protein ortholog to Borrelia burgdorferi BB0464	A_cluster_in_Borrelia_probably_related_to_lipoprotein_export	Cell Wall and Capsule	Gram-Negative cell wall components
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	CBSS-630.2.peg.3360	Clustering-based subsystems	
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)	CBSS-630.2.peg.3360	Clustering-based subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	CBSS-630.2.peg.3360	Clustering-based subsystems	
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	CBSS-630.2.peg.3360	Clustering-based subsystems	
UPF0235 protein VC0458	CBSS-630.2.peg.3360	Clustering-based subsystems	
Similar to coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	CBSS-630.2.peg.3360	Clustering-based subsystems	
HAM1-like protein	CBSS-630.2.peg.3360	Clustering-based subsystems	
Alpha-related fimbriae usher protein	&#945;-related_Fimbriae_in_Yersinia	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-related fimbriae minor subunit 1	&#945;-related_Fimbriae_in_Yersinia	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-related fimbriae minor subunit 2	&#945;-related_Fimbriae_in_Yersinia	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-related fimbriae major subunit	&#945;-related_Fimbriae_in_Yersinia	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-related fimbriae chaperone 1	&#945;-related_Fimbriae_in_Yersinia	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-related fimbriae chaperone 2	&#945;-related_Fimbriae_in_Yersinia	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
FIG098404: Hypothetical protein	CBSS-235909.3.peg.1769	Clustering-based subsystems	
FIG087842: Hypothetical protein	CBSS-235909.3.peg.1769	Clustering-based subsystems	
FIG100068: Hypothetical protein	CBSS-235909.3.peg.1769	Clustering-based subsystems	
FIG124585: Hypothetical protein	CBSS-235909.3.peg.1769	Clustering-based subsystems	
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	dTDP-rhamnose_synthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	dTDP-rhamnose_synthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	dTDP-rhamnose_synthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	dTDP-rhamnose_synthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33)	dTDP-rhamnose_synthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-rhamnosyl transferase RfbF (EC 2.-.-.-)	dTDP-rhamnose_synthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL	dTDP-rhamnose_synthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
ABC transporter membrane-spanning permease, Pep export, Vex3	Streptococcus_pneumoniae_Vancomycin_Tolerance_Locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
ABC transporter membrane-spanning permease, Pep export, Vex1	Streptococcus_pneumoniae_Vancomycin_Tolerance_Locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
ABC transporter, ATP-binding protein Vex2	Streptococcus_pneumoniae_Vancomycin_Tolerance_Locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Sensor histidine kinase VncS	Streptococcus_pneumoniae_Vancomycin_Tolerance_Locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Two-component response regulator VncR	Streptococcus_pneumoniae_Vancomycin_Tolerance_Locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
psaE promoter	Psa_locus_in_Yersinia	Experimental Subsystems	
putative Fur binding site at psaE	Psa_locus_in_Yersinia	Experimental Subsystems	
Protein psaE precursor	Psa_locus_in_Yersinia	Experimental Subsystems	
Protein psaF	Psa_locus_in_Yersinia	Experimental Subsystems	
psaA promoter	Psa_locus_in_Yersinia	Experimental Subsystems	
pH 6 antigen adhesin	Psa_locus_in_Yersinia	Experimental Subsystems	
Chaperone protein psaB precursor	Psa_locus_in_Yersinia	Experimental Subsystems	
Outer membrane usher protein psaC precursor	Psa_locus_in_Yersinia	Experimental Subsystems	
Glycine N-methyltransferase (EC 2.1.1.20)	Betaine_biosynthesis_from_glycine	Stress Response	Osmotic stress
Sarcosine N-methyltransferase	Betaine_biosynthesis_from_glycine	Stress Response	Osmotic stress
Dimethylglycine N-methyltransferase	Betaine_biosynthesis_from_glycine	Stress Response	Osmotic stress
Penicillin-binding protein DacC	Spore_Core_Dehydration	Dormancy and Sporulation	
Spore maturation protein A	Spore_Core_Dehydration	Dormancy and Sporulation	
Spore maturation protein B	Spore_Core_Dehydration	Dormancy and Sporulation	
Spore maturation protein A-like protein	Spore_Core_Dehydration	Dormancy and Sporulation	
Fused spore maturation proteins A and B	Spore_Core_Dehydration	Dormancy and Sporulation	
FIG071147: hypothetical protein	CBSS-227377.1.peg.2035	Clustering-based subsystems	
FIG050068: DNA-binding protein	CBSS-227377.1.peg.2035	Clustering-based subsystems	
Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8)	Indole-pyruvate_oxidoreductase_complex	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8)	Indole-pyruvate_oxidoreductase_complex	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Carbonic anhydrase (EC 4.2.1.1)	Zinc_regulated_enzymes	Regulation and Cell signaling	
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	Zinc_regulated_enzymes	Regulation and Cell signaling	
Dihydroorotase (EC 3.5.2.3)	Zinc_regulated_enzymes	Regulation and Cell signaling	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Zinc_regulated_enzymes	Regulation and Cell signaling	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Zinc_regulated_enzymes	Regulation and Cell signaling	
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Zinc_regulated_enzymes	Regulation and Cell signaling	
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Zinc_regulated_enzymes	Regulation and Cell signaling	
Porphobilinogen synthase (EC 4.2.1.24)	Zinc_regulated_enzymes	Regulation and Cell signaling	
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Zinc_regulated_enzymes	Regulation and Cell signaling	
Queuosine biosynthesis QueD, PTPS-I	Zinc_regulated_enzymes	Regulation and Cell signaling	
Zinc uptake regulation protein ZUR	Zinc_regulated_enzymes	Regulation and Cell signaling	
C4-type zinc finger protein, DksA/TraR family	Zinc_regulated_enzymes	Regulation and Cell signaling	
Carbonic anhydrase, gamma class (EC 4.2.1.1)	Zinc_regulated_enzymes	Regulation and Cell signaling	
Zinc ABC transporter, inner membrane permease protein ZnuB	Transport_of_Zinc	Membrane Transport	
Zinc ABC transporter, periplasmic-binding protein ZnuA	Transport_of_Zinc	Membrane Transport	
Zinc uptake regulation protein ZUR	Transport_of_Zinc	Membrane Transport	
Zinc ABC transporter, ATP-binding protein ZnuC	Transport_of_Zinc	Membrane Transport	
COG0523: Putative GTPases (G3E family)	Transport_of_Zinc	Membrane Transport	
Candidate zinc-binding lipoprotein ZinT	Transport_of_Zinc	Membrane Transport	
Zinc-regulated outer membrane receptor	Transport_of_Zinc	Membrane Transport	
Predicted zinc-binding protein	Transport_of_Zinc	Membrane Transport	
Zinc-regulated TonB-dependent outer membrane receptor	Transport_of_Zinc	Membrane Transport	
Transcriptional repressor AdcR for Zn(2+)-responsive expression	Transport_of_Zinc	Membrane Transport	
Zinc transporter, ZIP family	Transport_of_Zinc	Membrane Transport	
Candidate Zn-dependent transcriptional regulator, MntR/DtxR family	Transport_of_Zinc	Membrane Transport	
Zinc-regulated outer membrane porin	Transport_of_Zinc	Membrane Transport	
Predicted zinc regulator, ArsR family	Transport_of_Zinc	Membrane Transport	
Zinc-regulated zinc transporting ATPase ZntA	Transport_of_Zinc	Membrane Transport	
Ribosome recycling factor	CBSS-176299.4.peg.1996B	Clustering-based subsystems	
Translation elongation factor Ts	CBSS-176299.4.peg.1996B	Clustering-based subsystems	
SSU ribosomal protein S2p (SAe)	CBSS-176299.4.peg.1996B	Clustering-based subsystems	
Uridylate kinase (EC 2.7.4.-)	CBSS-176299.4.peg.1996B	Clustering-based subsystems	
ATP-dependent Clp protease ATP-binding subunit ClpA	CBSS-176299.4.peg.1996B	Clustering-based subsystems	
Fructose-bisphosphate aldolase (EC 4.1.2.13)	Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase	Carbohydrates	Polysaccharides
Putative carbohydrate kinase in cluster with fructose-bisphosphate aldolase	Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase	Carbohydrates	Polysaccharides
Putative carbohydrate PTS system, IIC component (EC 2.7.1.69)	Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase	Carbohydrates	Polysaccharides
Putative carbohydrate PTS system, IIB component (EC 2.7.1.69)	Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase	Carbohydrates	Polysaccharides
Phosphotransferase system HPr enzyme in cluster with fructose-bisphosphate aldolase	Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase	Carbohydrates	Polysaccharides
Putative transcriptional regulator of unknown carbohydrate utilization cluster, GntR family	Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase	Carbohydrates	Polysaccharides
Putative carbohydrate PTS system, IIA component (EC 2.7.1.69)	Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase	Carbohydrates	Polysaccharides
Hydroxylamine reductase (EC 1.7.-.-)	Nitrosative_stress	Nitrogen Metabolism	
NADH oxidoreductase hcr (EC 1.-.-.-)	Nitrosative_stress	Nitrogen Metabolism	
Nitric oxide-dependent regulator DnrN or NorA	Nitrosative_stress	Nitrogen Metabolism	
Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR	Nitrosative_stress	Nitrogen Metabolism	
Nitrite-sensitive transcriptional repressor NsrR	Nitrosative_stress	Nitrogen Metabolism	
NnrS protein involved in response to NO	Nitrosative_stress	Nitrogen Metabolism	
Hcp transcriptional regulator HcpR (Crp/Fnr family)	Nitrosative_stress	Nitrogen Metabolism	
Ferredoxin 3 fused to uncharacterized domain	Nitrosative_stress	Nitrogen Metabolism	
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	Nitrosative_stress	Nitrogen Metabolism	
Anaerobic nitric oxide reductase flavorubredoxin	Nitrosative_stress	Nitrogen Metabolism	
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)	Nitrosative_stress	Nitrogen Metabolism	
diptheria toxin resistance protein required for diphthamide biosynthesis (Saccharomyces)-like 1	Diphtheria_toxin	Virulence	Toxins and superantigens
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	Glutaredoxin_3_containing_cluster	Clustering-based subsystems	
Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state)	Glutaredoxin_3_containing_cluster	Clustering-based subsystems	
FIG136845: Rhodanese-related sulfurtransferase	Glutaredoxin_3_containing_cluster	Clustering-based subsystems	
Glutaredoxin 3 (Grx3)	Glutaredoxin_3_containing_cluster	Clustering-based subsystems	
FIG024006: iron uptake protein	CBSS-225849.3.peg.3151	Clustering-based subsystems	
FIG138928: iron-regulated membrane protein	CBSS-225849.3.peg.3151	Clustering-based subsystems	
FIG016502: iron uptake protein	CBSS-225849.3.peg.3151	Clustering-based subsystems	
Toprim domain protein	CBSS-315749.4.peg.3658	Clustering-based subsystems	
Thioredoxin	CBSS-315749.4.peg.3658	Clustering-based subsystems	
Glycine cleavage system H protein	CBSS-315749.4.peg.3658	Clustering-based subsystems	
Arsenate reductase (EC 1.20.4.1)	CBSS-315749.4.peg.3658	Clustering-based subsystems	
FIG011871: Hypothetical protein	CBSS-315749.4.peg.3658	Clustering-based subsystems	
FIG109201: Hypothetical protein	CBSS-315749.4.peg.3658	Clustering-based subsystems	
Threonyl-tRNA synthetase (EC 6.1.1.3)	tRNA_aminoacylation,_Thr	Protein Metabolism	Protein biosynthesis
Threonyl-tRNA synthetase fragment	tRNA_aminoacylation,_Thr	Protein Metabolism	Protein biosynthesis
Threonyl-tRNA synthetase-related protein	tRNA_aminoacylation,_Thr	Protein Metabolism	Protein biosynthesis
Formate dehydrogenase O alpha subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase O beta subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase O gamma subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase H (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase N alpha subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase N beta subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase N gamma subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase alpha subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
Formate dehydrogenase beta subunit (EC 1.2.1.2)	Formate_dehydrogenase	Respiration	Electron donating reactions
DNA primase (EC 2.7.7.-), Phage P4-associated	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG018226: DNA replication protein, phage-associated	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG033266: Phage DNA binding protein	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG054316: Phage polarity suppression protein	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG070121: Phage capsid and scaffold protein	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG107037: Phage late gene regulator	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG118045: Phage immunity repressor protein	Bacteriophage_P4_cluster	Clustering-based subsystems	
Phage integrase, Phage P4-associated	Bacteriophage_P4_cluster	Clustering-based subsystems	
Replicative helicase RepA, Phage P4-associated	Bacteriophage_P4_cluster	Clustering-based subsystems	
Zinc binding domain	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG032397: Phage protein	Bacteriophage_P4_cluster	Clustering-based subsystems	
FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated	CBSS-364106.7.peg.3204	Clustering-based subsystems	
Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)	CBSS-364106.7.peg.3204	Clustering-based subsystems	
V-type ATP synthase subunit A (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit B (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit C (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit D (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit E (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit F (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit I (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit K (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit H (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
V-type ATP synthase subunit G (EC 3.6.3.14)	V-Type_ATP_synthase	Respiration	ATP synthases
Archaeal-type H+-ATPase subunit H	V-Type_ATP_synthase	Respiration	ATP synthases
Conserved protein YcjX with nucleoside triphosphate hydrolase domain	A_conserved_operon_linked_to_TyrR_and_possibly_involved_in_virulence	Regulation and Cell signaling	Regulation of virulence
Membrane protein YcjF	A_conserved_operon_linked_to_TyrR_and_possibly_involved_in_virulence	Regulation and Cell signaling	Regulation of virulence
Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter	CBSS-12149.1.peg.3301	Clustering-based subsystems	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	CBSS-12149.1.peg.3301	Clustering-based subsystems	
Uncharacterized ABC transporter, ATP-binding protein YrbF	CBSS-12149.1.peg.3301	Clustering-based subsystems	
Uncharacterized ABC transporter, auxiliary component YrbC	CBSS-12149.1.peg.3301	Clustering-based subsystems	
Uncharacterized ABC transporter, periplasmic component YrbD	CBSS-12149.1.peg.3301	Clustering-based subsystems	
Uncharacterized ABC transporter, permease component YrbE	CBSS-12149.1.peg.3301	Clustering-based subsystems	
Uncharacterized protein YrbB	CBSS-12149.1.peg.3301	Clustering-based subsystems	
YrbA protein	CBSS-12149.1.peg.3301	Clustering-based subsystems	
Manganese superoxide dismutase (EC 1.15.1.1)	Nitric_oxide_synthase	Nitrogen Metabolism	
Nitric oxide synthase oxygenase (EC 1.-.-.-)	Nitric_oxide_synthase	Nitrogen Metabolism	
putative cytochrome P450 hydroxylase	Nitric_oxide_synthase	Nitrogen Metabolism	
FUPA27 P-type ATPase	FUPA27_Proteobacteria_check		
Type cbb3 cytochrome oxidase biogenesis protein CcoH	FUPA27_Proteobacteria_check		
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation	FUPA27_Proteobacteria_check		
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	FUPA27_Proteobacteria_check		
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	FUPA27_Proteobacteria_check		
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	FUPA27_Proteobacteria_check		
putative cytochrome c oxidase, subunit I	FUPA27_Proteobacteria_check		
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	FUPA27_Proteobacteria_check		
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion	FUPA27_Proteobacteria_check		
Putative analog of CcoH, COG3198	FUPA27_Proteobacteria_check		
Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein	FUPA27_Proteobacteria_check		
membrane-bounded cytochrome biogenesis DsbD/cycZ-like domain	FUPA27_Proteobacteria_check		
Putative FixH	FUPA27_Proteobacteria_check		
Methionine aminopeptidase (EC 3.4.11.18)	CBSS-312309.3.peg.1965	Clustering-based subsystems	
SSU ribosomal protein S2p (SAe)	CBSS-312309.3.peg.1965	Clustering-based subsystems	
Translation elongation factor Ts	CBSS-312309.3.peg.1965	Clustering-based subsystems	
Uridylate kinase (EC 2.7.4.-)	CBSS-312309.3.peg.1965	Clustering-based subsystems	
[Protein-PII] uridylyltransferase (EC 2.7.7.59)	CBSS-312309.3.peg.1965	Clustering-based subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	ArsR_methyltransferase_fusion	Experimental Subsystems	
S-adenosylmethionine synthetase (EC 2.5.1.6)	ArsR_methyltransferase_fusion	Experimental Subsystems	
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	ArsR_methyltransferase_fusion	Experimental Subsystems	
Adenosylhomocysteinase (EC 3.3.1.1)	ArsR_methyltransferase_fusion	Experimental Subsystems	
O-acetylhomoserine sulfhydrylase (EC 4.2.99.10) / O-succinylhomoserine sulfhydrylase (EC 4.2.99.9)	ArsR_methyltransferase_fusion	Experimental Subsystems	
Transcriptional regulator, ArsR family	ArsR_methyltransferase_fusion	Experimental Subsystems	
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	ArsR_methyltransferase_fusion	Experimental Subsystems	
Homoserine O-acetyltransferase (EC 2.3.1.31)	ArsR_methyltransferase_fusion	Experimental Subsystems	
Methyltransferase fusion	ArsR_methyltransferase_fusion	Experimental Subsystems	
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Fumarylacetoacetate hydrolase family protein	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aromatic-amino-acid aminotransferase (EC 2.6.1.57)	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Fumarylacetoacetase (EC 3.7.1.2)	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Pterin-4-alpha-carbinolamine dehydratase-like	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	Pterin_carbinolamine_dehydratase	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Fucose permease	L-fucose_utilization	Carbohydrates	Monosaccharides
L-fucose isomerase (EC 5.3.1.25)	L-fucose_utilization	Carbohydrates	Monosaccharides
L-fucose mutarotase	L-fucose_utilization	Carbohydrates	Monosaccharides
L-fucose operon activator	L-fucose_utilization	Carbohydrates	Monosaccharides
L-fuculokinase (EC 2.7.1.51)	L-fucose_utilization	Carbohydrates	Monosaccharides
L-fuculose phosphate aldolase (EC 4.1.2.17)	L-fucose_utilization	Carbohydrates	Monosaccharides
Lactaldehyde reductase (EC 1.1.1.77)	L-fucose_utilization	Carbohydrates	Monosaccharides
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22)	L-fucose_utilization	Carbohydrates	Monosaccharides
Alpha-L-fucosidase (EC 3.2.1.51)	L-fucose_utilization	Carbohydrates	Monosaccharides
Possible alternative L-fucose mutarotase	L-fucose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of fucose utilization, GntR family	L-fucose_utilization	Carbohydrates	Monosaccharides
Predicted L-fucose-specific phosphotransferase system, EIIA component	L-fucose_utilization	Carbohydrates	Monosaccharides
Predicted L-fucose-specific phosphotransferase system, EIIB component	L-fucose_utilization	Carbohydrates	Monosaccharides
Predicted L-fucose-specific phosphotransferase system, EIIC component	L-fucose_utilization	Carbohydrates	Monosaccharides
Predicted L-fucose-specific phosphotransferase system, EIID component	L-fucose_utilization	Carbohydrates	Monosaccharides
Possible fucose ABC transporter, substrate-binding component	L-fucose_utilization	Carbohydrates	Monosaccharides
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Glutamate racemase (EC 5.1.1.3)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
D-alanine--D-alanine ligase (EC 6.3.2.4)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Glutamine synthetase type I (EC 6.3.1.2)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Murein-DD-endopeptidase (EC 3.4.99.-)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
D-alanine--D-alanine ligase B (EC 6.3.2.4)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
D-alanine--D-alanine ligase A (EC 6.3.2.4)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Penicillin-binding protein 4 precursor	Peptidoglycan_Biosynthesis_experimental	Experimental Subsystems	
Enolase (EC 4.2.1.11)	ERES_Pathogenicity_Region	Experimental Subsystems	
RofA-like transcriptional regulator RALP3	ERES_Pathogenicity_Region	Experimental Subsystems	
Extracellular Protein Factor, epf	ERES_Pathogenicity_Region	Experimental Subsystems	
Streptolysin S precursor (SagA)	ERES_Pathogenicity_Region	Experimental Subsystems	
YjbE secreted protein	YjbEFGH_Locus_Involved_in_Exopolysaccharide_Production	Cell Wall and Capsule	Capsular and extracellular polysacchrides
YjbF outer membrane lipoprotein	YjbEFGH_Locus_Involved_in_Exopolysaccharide_Production	Cell Wall and Capsule	Capsular and extracellular polysacchrides
YjbG polysaccharide synthesis-related protein	YjbEFGH_Locus_Involved_in_Exopolysaccharide_Production	Cell Wall and Capsule	Capsular and extracellular polysacchrides
YjbH outer membrane lipoprotein	YjbEFGH_Locus_Involved_in_Exopolysaccharide_Production	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-)	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Lipopolysaccharide biosynthesis protein RffC	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
WzxE protein	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
4-alpha-L-fucosyltransferase (EC 2.4.1.-)	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.-)	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
regulator of length of O-antigen component of lipopolysaccharide chains	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Lipopolysaccharide biosynthesis protein RffA	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Capsule polysaccharide export protein	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Capsular polysaccharide synthesis enzyme Cap8G	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Capsular polysaccharide synthesis enzyme Cap5G	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Putative mannosyltransferase involved in polysaccharide biosynthesis	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) 2	Lipopolysaccharide_biosynthesis_2	Experimental Subsystems	Clustering-based subsystems
Arginine deiminase (EC 3.5.3.6)	Arginine_Deiminase_Pathway	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_Deiminase_Pathway	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carbamate kinase (EC 2.7.2.2)	Arginine_Deiminase_Pathway	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine antiporter ArcD	Arginine_Deiminase_Pathway	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family	Arginine_Deiminase_Pathway	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine pathway regulatory protein ArgR, repressor of arg regulon	Arginine_Deiminase_Pathway	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
FIG108202: hypothetical protein	Mycobacterium_virulence_operon_involved_in_DNA_transcription	Virulence	
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	Mycobacterium_virulence_operon_involved_in_DNA_transcription	Virulence	
DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	Mycobacterium_virulence_operon_involved_in_DNA_transcription	Virulence	
L-2,4-diaminobutyric acid acetyltransferase (EC 2.3.1.-)	Ectoine_biosynthesis_and_regulation	Stress Response	Osmotic stress
Diaminobutyrate-pyruvate aminotransferase (EC 2.6.1.46)	Ectoine_biosynthesis_and_regulation	Stress Response	Osmotic stress
L-ectoine synthase (EC 4.2.1.-)	Ectoine_biosynthesis_and_regulation	Stress Response	Osmotic stress
Ectoine hydroxylase (EC 1.17.-.-)	Ectoine_biosynthesis_and_regulation	Stress Response	Osmotic stress
Putative regulatory protein associated with the ectoine operon	Ectoine_biosynthesis_and_regulation	Stress Response	Osmotic stress
Aspartokinase (EC 2.7.2.4) associated with ectoine biosynthesis	Ectoine_biosynthesis_and_regulation	Stress Response	Osmotic stress
Cation efflux system protein CusA	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cobalt-zinc-cadmium resistance protein	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cobalt-zinc-cadmium resistance protein CzcA	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper-sensing two-component system response regulator CusR	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
DNA-binding heavy metal response regulator	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Heavy metal RND efflux outer membrane protein, CzcC family	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Heavy metal sensor histidine kinase	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- resistance associated protein	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Permease of the drug/metabolite transporter (DMT) superfamily	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Probable Co/Zn/Cd efflux system membrane fusion protein	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Quinolinate synthetase (EC 2.5.1.72)	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Ribosyl nicotinamide transporter, PnuC-like	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcriptional regulator, MerR family	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cobalt-zinc-cadmium resistance protein CzcD	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Hypothetical N-acetyltransferase	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Hypothetical protein YPO2504	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Putative DMT superfamily metabolite efflux protein precursor	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Zinc transporter ZitB	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cadmium-transporting ATPase (EC 3.6.3.3)	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Heavy metal resistance transcriptional regulator HmrR	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Hypothetical protein involved in heavy metal export	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper sensory histidine kinase CusS	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Probable cadmium-transporting ATPase (EC 3.6.3.3)	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cd(II)/Pb(II)-responsive transcriptional regulator	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Zn(II) and Co(II) transmembrane diffusion facilitator	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Putative silver efflux pump	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cation efflux system protein CusC precursor	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cation efflux system protein CusF precursor	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Nickel-cobalt-cadmium resistance protein NccB	Cobalt-zinc-cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Proteasome subunit alpha (EC 3.4.25.1), archaeal	Proteasome_archaeal	Protein Metabolism	Protein degradation
Proteasome subunit beta (EC 3.4.25.1), archaeal	Proteasome_archaeal	Protein Metabolism	Protein degradation
Proteasome-activating AAA-ATPase (PAN), archaeal	Proteasome_archaeal	Protein Metabolism	Protein degradation
Proteasome subunit alpha (EC 3.4.25.1), bacterial	Proteasome_archaeal	Protein Metabolism	Protein degradation
Proteasome subunit beta (EC 3.4.25.1), bacterial	Proteasome_archaeal	Protein Metabolism	Protein degradation
Bacterial proteasome-activating AAA-ATPase (PAN)	Proteasome_archaeal	Protein Metabolism	Protein degradation
Prokaryotic ubiquitin-like protein Pup	Proteasome_archaeal	Protein Metabolism	Protein degradation
Pup ligase PafA, possible component of postulated heterodimer PafA-PafA'	Proteasome_archaeal	Protein Metabolism	Protein degradation
Pup ligase PafA' paralog, possible component of postulated heterodimer PafA-PafA'	Proteasome_archaeal	Protein Metabolism	Protein degradation
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Benzoate transport protein	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Catechol 1,2-dioxygenase (EC 1.13.11.1)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Muconate cycloisomerase (EC 5.5.1.1)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Muconolactone isomerase (EC 5.3.3.4)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
benABC operon transcriptional activator BenR	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
benzoate MFS transporter BenK	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
benzoate dioxygenase, ferredoxin reductase component	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
benzoate-specific porin	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Benzoate catabolic operon transcription regulator	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Benzoylformate decarboxylase (EC 4.1.1.7)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Kynurenine formamidase, bacterial (EC 3.5.1.9)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Toluate 1,2-dioxygenase alpha subunit	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Toluate 1,2-dioxygenase beta subunit	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Toluate 1,2-dioxygenase electron transfer component	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Ring hydroxylating dioxygenase, alpha subunit (EC 1.14.12.13)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-hydroxymuconic semialdehyde hydrolase (EC 3.1.1.-)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-chlorobenzoate 1,2-dioxygenase (EC 1.14.12.13)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Probable TOLUENESULFONATE zinc-independent alcohol dehydrogenase oxidoreductase protein	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Salicylaldehyde dehydrogenase (EC 1.2.1.65)	Benzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent Clp protease ATP-binding subunit ClpX	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent Clp protease adaptor protein ClpS	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent Clp protease ATP-binding subunit ClpA	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent hsl protease ATP-binding subunit HslU	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent protease HslV (EC 3.4.25.-)	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ClpB protein	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent protease La (EC 3.4.21.53) Type I	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ClpXP protease specificity-enhancing factor	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
Outer membrane stress sensor protease DegS	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
Outer membrane stress sensor protease DegQ, serine protease	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATPase, AFG1 family	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent protease La (EC 3.4.21.53) Type II	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent Clp protease, ATP-binding subunit ClpC	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
Nucleotide excision repair protein, with UvrB/UvrC motif	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent protease domain protein (EC 3.4.21.-)	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
ATP-dependent protease La (EC 3.4.21.53)	Proteolysis_in_bacteria,_ATP-dependent	Protein Metabolism	Protein degradation
Serine protease inhibitor (serpin family)	Protease_inhibitors	Experimental Subsystems	
Proteinase inhibitor I11, ecotin precursor	Protease_inhibitors	Experimental Subsystems	
Serine proteases of the peptidase family S9A	Protease_inhibitors	Experimental Subsystems	
Protease inhibitor, SSI family (subtilisin inhibitor)	Protease_inhibitors	Experimental Subsystems	
peptidase inhibitor, Kazal family	Protease_inhibitors	Experimental Subsystems	
Gamma-hemolysin component A	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Gamma-hemolysin component B	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Gamma-hemolysin component C	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
IgG-binding protein SBI	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Leukotoxin LukD	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Leukotoxin LukE	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Alpha-hemolysin precursor	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Panton-Valentine leukocidin chain F precursor	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Panton-Valentine leukocidin chain S precursor	Staphylococcus_Two-component_and_Pore-forming_Cytolysins	Virulence, Disease and Defense	Toxins and superantigens
Two component transcriptional regulatory protein DevR	DosR_regulon		
Siderophore synthetase superfamily, group A	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Siderophore synthetase superfamily, group B	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Siderophore synthetase superfamily, group C	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Putative efflux transmembrane protein in siderophore biosynthesys operon	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Outer membrane receptor proteins, likely involved in siderophore uptake	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Uncharacterized ferric siderophore receptor protein	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Putative siderophore biosynthesis protein, HpcH/HpaI aldolase family	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Putative siderophore biosynthesis protein, related to cysteine synthase	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Putative siderophore biosynthesis protein, Orn/DAP/Arg decarboxylase	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Putative siderophore biosynthesis protein, Ornithine cyclodeaminase (EC 4.3.1.12)	Siderophore_biosynthesis_orphans	Experimental Subsystems	
siderophore export system, ABC-type, fused ATPase and permease components	Siderophore_biosynthesis_orphans	Experimental Subsystems	
L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Ferric reductase (1.6.99.14)	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Uncharacterized siderophore transporter, permease protein	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Uncharacterized siderophore transporter, ATPase component	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Uncharacterized Fe-S protein in siderophore biosynthesis operon	Siderophore_biosynthesis_orphans	Experimental Subsystems	
ABC-type siderophore export system, fused ATPase and permease components	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Putative reductoisomerase in siderophore biosynthesis gene cluster	Siderophore_biosynthesis_orphans	Experimental Subsystems	
Related to N5-hydroxyornithine formyltransferase	Siderophore_biosynthesis_orphans	Experimental Subsystems	
tRNA pseudouridine synthase A (EC 4.2.1.70)	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Dihydrofolate synthase (EC 6.3.2.12)	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Folylpolyglutamate synthase (EC 6.3.2.17)	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
DedD protein	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Colicin V production protein	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Amidophosphoribosyltransferase (EC 2.4.2.14)	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
DedA protein	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin production protein	Colicin_V_and_Bacteriocin_Production_Cluster	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Di-/tripeptide transporter	Proton-dependent_Peptide_Transporters	Membrane Transport	Uni- Sym- and Antiporters
Di/tripeptide permease DtpA	Proton-dependent_Peptide_Transporters	Membrane Transport	Uni- Sym- and Antiporters
Di/tripeptide permease DtpT	Proton-dependent_Peptide_Transporters	Membrane Transport	Uni- Sym- and Antiporters
Di/tripeptide permease YjdL	Proton-dependent_Peptide_Transporters	Membrane Transport	Uni- Sym- and Antiporters
Di/tripeptide permease DtpB	Proton-dependent_Peptide_Transporters	Membrane Transport	Uni- Sym- and Antiporters
Di/tripeptide permease YbgH	Proton-dependent_Peptide_Transporters	Membrane Transport	Uni- Sym- and Antiporters
Chromosome (plasmid) partitioning protein ParA	RNA_modification_and_chromosome_partitioning_cluster	Clustering-based subsystems	
Chromosome (plasmid) partitioning protein ParB	RNA_modification_and_chromosome_partitioning_cluster	Clustering-based subsystems	
GTPase and tRNA-U34 5-formylation enzyme TrmE	RNA_modification_and_chromosome_partitioning_cluster	Clustering-based subsystems	
rRNA small subunit methyltransferase, glucose inhibited division protein GidB	RNA_modification_and_chromosome_partitioning_cluster	Clustering-based subsystems	
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	RNA_modification_and_chromosome_partitioning_cluster	Clustering-based subsystems	
Chromosome (plasmid) partitioning protein ParB-2	RNA_modification_and_chromosome_partitioning_cluster	Clustering-based subsystems	
tRNA and rRNA cytosine-C5-methylase Type 1	Archease2	Miscellaneous	
Archease	Archease2	Miscellaneous	
tRNA m(1)G methyltransferase; COG2419: Uncharacterized ACR	Archease2	Miscellaneous	
tRNA/RNA cytosine-C5-methylase (EC 2.1.1.-)	Archease2	Miscellaneous	
SSO0251 family	Archease2	Miscellaneous	
Phosphosugar-binding transcriptional repressor, RpiR family	Galactose-inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)	Galactose-inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
PTS system, galactose-inducible IIB component (EC 2.7.1.69) / PTS system, galactose-inducible IIC component (EC 2.7.1.69)	Galactose-inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
PTS system, galactose-inducible IIA component (EC 2.7.1.69)	Galactose-inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	Galactose-inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Galactose-inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Phosphocarrier protein of PTS system	Galactose-inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
FIG011121: hypothetical protein	CBSS-479431.5.peg.3955	Clustering-based subsystems	
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	CBSS-479431.5.peg.3955	Clustering-based subsystems	
FIG137598: hypothetical protein	CBSS-479431.5.peg.3955	Clustering-based subsystems	
FIG146518: Zn-dependent hydrolases, including glyoxylases	CBSS-479431.5.peg.3955	Clustering-based subsystems	
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)	Chloroaromatic_degradation_pathway	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)	Chloroaromatic_degradation_pathway	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)	Chloroaromatic_degradation_pathway	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Chloroaromatic_degradation_pathway	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Chlorocatechol 1,2-dioxygenase	Chloroaromatic_degradation_pathway	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Cytolethal distending toxin subunit B	Cytolethal_distending_toxins	Virulence, Disease and Defense	Toxins and superantigens
Virulence protein MsgA	Cytolethal_distending_toxins	Virulence, Disease and Defense	Toxins and superantigens
Putative outer membrane virulence protein PhoP	Cytolethal_distending_toxins	Virulence, Disease and Defense	Toxins and superantigens
Putative pertussis-like toxin subunit PtlA (EC 2.4.2.-)	Cytolethal_distending_toxins	Virulence, Disease and Defense	Toxins and superantigens
Putative pertussis-like toxin subunit PtlB	Cytolethal_distending_toxins	Virulence, Disease and Defense	Toxins and superantigens
Cytolethal distending toxin subunit A	Cytolethal_distending_toxins	Virulence, Disease and Defense	Toxins and superantigens
Cytolethal distending toxin subunit C	Cytolethal_distending_toxins	Virulence, Disease and Defense	Toxins and superantigens
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate synthase	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Proposed lipoate regulatory protein YbeD	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Transmembrane protein MT2276, clustered with lipoate gene	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A, C-terminal 70 percent	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A, N-terminal 30 percent	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A type 2	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate synthase, cyanobacterial paralog	Lipoic_acid_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Seryl-tRNA synthetase (EC 6.1.1.11)	tRNA_aminoacylation,_Ser	Protein Metabolism	Protein biosynthesis
Archaeal seryl-tRNA synthetase-related sequence	tRNA_aminoacylation,_Ser	Protein Metabolism	Protein biosynthesis
Seryl-tRNA synthetase (EC 6.1.1.11), archaeal	tRNA_aminoacylation,_Ser	Protein Metabolism	Protein biosynthesis
Stage III sporulation protein AA	Sporulation_Cluster_III_A	Dormancy and Sporulation	
Stage III sporulation protein AB	Sporulation_Cluster_III_A	Dormancy and Sporulation	
Stage III sporulation protein AC	Sporulation_Cluster_III_A	Dormancy and Sporulation	
Stage III sporulation protein AD	Sporulation_Cluster_III_A	Dormancy and Sporulation	
Stage III sporulation protein AE	Sporulation_Cluster_III_A	Dormancy and Sporulation	
Stage III sporulation protein AF	Sporulation_Cluster_III_A	Dormancy and Sporulation	
Stage III sporulation protein AG	Sporulation_Cluster_III_A	Dormancy and Sporulation	
Stage III sporulation protein AH	Sporulation_Cluster_III_A	Dormancy and Sporulation	
COG1496: Uncharacterized conserved protein	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
Cell division protein FtsQ	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
Cell division protein FtsZ (EC 3.4.24.-)	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
FIG021292: hypothetical protein	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
FIG021764: Possible membrane protein	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
FIG055075: Possibly a cell division protein, antigen 84 in Mycobacteria	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	Cell_division_cluster_containing_FtsZ_and_FtsW	Clustering-based subsystems	Cell Division
Flavocytochrome c flavin subunit	Flavocytochrome_C	Respiration	
Flavocytochrome c heme subunit	Flavocytochrome_C	Respiration	
Periplasmic thiol:disulfide interchange protein DsbA	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Periplasmic thiol:disulfide interchange protein, DsbA-like	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Thiol:disulfide interchange protein DsbC	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Thiol:disulfide interchange protein DsbG precursor	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	Periplasmic_disulfide_interchange	Protein Metabolism	Protein folding
Thymidine phosphorylase (EC 2.4.2.4)	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Purine nucleoside phosphorylase (EC 2.4.2.1)	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Phosphopentomutase (EC 5.4.2.7)	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Nucleoside permease NupC	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Putative deoxyribonuclease YjjV	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Ribokinase (EC 2.7.1.15)	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Deoxyribose operon repressor, DeoR family	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, permease 1 component	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, permease 2 component	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, ATP-binding component	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, substrate-binding component	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Deoxyribonucleoside regulator DeoR (transcriptional repressor)	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Putative deoxyribose-specific ABC transporter, permease protein	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Putative deoxyribose-specific ABC transporter, ATP-binding protein	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	Monosaccharides
Ribonuclease P protein component (EC 3.1.26.5)	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
OxaI/YidC membrane insertion protein	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
Jag protein	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
GTPase and tRNA-U34 5-formylation enzyme TrmE	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
Glucose inhibited division protein GidA	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
Glucose inhibited division protein GidB, possible methyltransferase	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
Chromosome (plasmid) partitioning protein ParB	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
Chromosome (plasmid) partitioning protein ParA	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
Chromosome (plasmid) partitioning protein ParB-2	CBSS-280477.3.peg.4612	Clustering-based subsystems	Cell Division
Sensor histidine kinase LiaS	VraSR_Two-Component_Regulatory_System	Experimental Subsystems	Regulation of Virulence
Response regulator LiaR	VraSR_Two-Component_Regulatory_System	Experimental Subsystems	Regulation of Virulence
Transporter LiaF	VraSR_Two-Component_Regulatory_System	Experimental Subsystems	Regulation of Virulence
Sensor histidine kinase VraS	VraSR_Two-Component_Regulatory_System	Experimental Subsystems	Regulation of Virulence
Two component transcriptional regulator VraR	VraSR_Two-Component_Regulatory_System	Experimental Subsystems	Regulation of Virulence
Transporter associated with VraSR	VraSR_Two-Component_Regulatory_System	Experimental Subsystems	Regulation of Virulence
Predicted glucose oligosaccharide utilization regulator, LacI family	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Glucose oligosaccharide ABC transport system, sugar-binding protein	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Glucose oligosaccharide ABC transport system, permease protein 1	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Glucose oligosaccharide ABC transport system, permease protein 2	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Glucose oligosaccharide ABC transport system, ATP-binding protein 1	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Glucose oligosaccharide ABC transport system, ATP-binding protein 2	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Extracellular endo-1,4-glucanase	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Putative alpha-glucosidase	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Putative sugar isomerase	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Regulator of trehalose utilization TreR, ROK family	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Trehalose synthase, nucleoside diphosphate glucose dependent	Xyloglucan_Utilization	Carbohydrates	Polysaccharides
Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12)	Cellulose_synthesis	Experimental Subsystems	
Cellulose synthase, putative	Cellulose_synthesis	Experimental Subsystems	
Cyclic di-GMP binding protein precursor	Cellulose_synthesis	Experimental Subsystems	
Endoglucanase precursor (EC 3.2.1.4)	Cellulose_synthesis	Experimental Subsystems	
Cellulose synthase operon protein C	Cellulose_synthesis	Experimental Subsystems	
FIG005274: hypothetical protein	Cellulose_synthesis	Experimental Subsystems	
FIG002337: predicted inner membrane protein	Cellulose_synthesis	Experimental Subsystems	
FIG005119: putative inner membrane protein	Cellulose_synthesis	Experimental Subsystems	
FIG004405: Putative cytoplasmic protein	Cellulose_synthesis	Experimental Subsystems	
Universal stress protein family	CBSS-269801.1.peg.809	Clustering-based subsystems	DNA pol III alpha and a number of apparently unrelated functions
Alanine dehydrogenase (EC 1.4.1.1)	CBSS-269801.1.peg.809	Clustering-based subsystems	DNA pol III alpha and a number of apparently unrelated functions
Proline dipeptidase (EC 3.4.13.9)	CBSS-269801.1.peg.809	Clustering-based subsystems	DNA pol III alpha and a number of apparently unrelated functions
FIG002379: metal-dependent hydrolase	CBSS-269801.1.peg.809	Clustering-based subsystems	DNA pol III alpha and a number of apparently unrelated functions
FIG009439: Cytosolic protein containing multiple CBS domains	CBSS-269801.1.peg.809	Clustering-based subsystems	DNA pol III alpha and a number of apparently unrelated functions
FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type	CBSS-269801.1.peg.809	Clustering-based subsystems	DNA pol III alpha and a number of apparently unrelated functions
DNA polymerase III alpha subunit (EC 2.7.7.7)	CBSS-269801.1.peg.809	Clustering-based subsystems	DNA pol III alpha and a number of apparently unrelated functions
Peptidyl-tRNA hydrolase (EC 3.1.1.29)	Sporulation-associated_proteins_with_broader_functions	Dormancy and Sporulation	
Stage III sporulation protein AE	Sporulation-associated_proteins_with_broader_functions	Dormancy and Sporulation	
Protein of unknown function identified by role in sporulation (SpoVG)	Sporulation-associated_proteins_with_broader_functions	Dormancy and Sporulation	
RNA polymerase sporulation specific sigma factor SigH	Sporulation-associated_proteins_with_broader_functions	Dormancy and Sporulation	
Putative mobilization protein BF0133	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Putative conjugative transposon mobilization protein BF0132	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
hypothetical protein clusted with conjugative transposons, BF0131	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraA	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraB	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraC	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraD	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraE	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraF	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraG	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraH	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraI	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraJ	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraK	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraL	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraM	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraN	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraO	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraP	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Conjugative transposon protein TraQ	Conjugative_transposon,_Bacteroidales	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Sensory histidine kinase BaeS	The_mdtABCD_multidrug_resistance_cluster	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Response regulator BaeR	The_mdtABCD_multidrug_resistance_cluster	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Probable RND efflux membrane fusion protein	The_mdtABCD_multidrug_resistance_cluster	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug transporter MdtB	The_mdtABCD_multidrug_resistance_cluster	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug transporter MdtC	The_mdtABCD_multidrug_resistance_cluster	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug transporter MdtD	The_mdtABCD_multidrug_resistance_cluster	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
GGDEF and EAL domain proteins	CBSS-323850.3.peg.3284	Clustering-based subsystems	Putative GGDEF domain protein related to agglutinin secretion
ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE	CBSS-323850.3.peg.3284	Clustering-based subsystems	Putative GGDEF domain protein related to agglutinin secretion
ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing	CBSS-323850.3.peg.3284	Clustering-based subsystems	Putative GGDEF domain protein related to agglutinin secretion
FIGfam010717	CBSS-323850.3.peg.3284	Clustering-based subsystems	Putative GGDEF domain protein related to agglutinin secretion
Agglutination protein	CBSS-323850.3.peg.3284	Clustering-based subsystems	Putative GGDEF domain protein related to agglutinin secretion
FIGfam020323	CBSS-323850.3.peg.3284	Clustering-based subsystems	Putative GGDEF domain protein related to agglutinin secretion
GAF domain/GGDEF domain/EAL domain protein	CBSS-323850.3.peg.3284	Clustering-based subsystems	Putative GGDEF domain protein related to agglutinin secretion
putative exported protein	IRG1	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	IRG1	Experimental Subsystems	
Quinone oxidoreductase (EC 1.6.5.5)	IRG1	Experimental Subsystems	
Immune-responsive protein 1	IRG1	Experimental Subsystems	
Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)	Sporulation_Cluster	Dormancy and Sporulation	
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	Sporulation_Cluster	Dormancy and Sporulation	
Stage II sporulation protein D (SpoIID)	Sporulation_Cluster	Dormancy and Sporulation	
Transcription-repair coupling factor	Sporulation_Cluster	Dormancy and Sporulation	
possible tetrapyrrole methyltransferase domain	Sporulation_Cluster	Dormancy and Sporulation	
FIG007421: forespore shell protein	Sporulation_Cluster	Dormancy and Sporulation	
Spore cortex biosynthesis protein	Sporulation_Cluster	Dormancy and Sporulation	
RNA binding protein, contains ribosomal protein S1 domain	Sporulation_Cluster	Dormancy and Sporulation	
Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE)	Sporulation_Cluster	Dormancy and Sporulation	
FIG006789: Stage V sporulation protein	Sporulation_Cluster	Dormancy and Sporulation	
Stage V sporulation protein T, AbrB family transcriptional regulator (SpoVT)	Sporulation_Cluster	Dormancy and Sporulation	
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	Sporulation_Cluster	Dormancy and Sporulation	
Cys-Xaa-Xaa-Xaa system small protein	CXXX_repeat_peptide_maturase_system	Protein Metabolism	Protein processing and modification
Cys-Xaa-Xaa-Xaa system radical SAM maturase	CXXX_repeat_peptide_maturase_system	Protein Metabolism	Protein processing and modification
Copper-translocating P-type ATPase (EC 3.6.3.4)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Alternative cytochrome c oxidase polypeptide CoxN (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Alternative cytochrome c oxidase polypeptide CoxO (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Copper-containing nitrite reductase (EC 1.7.2.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c553-like	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
membrane c-type cytochrome cy	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase, subunit IV (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
probable cytochrome oxidase (cbb3-type)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide IV(EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
cb-type cytochrome c oxidase subunit IV [EC:1.9.3.1]	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
hypothetical cytochrome oxidase associated membrane protein	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
quinol oxidase polypeptide I QoxB (EC:1.9.3.-)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
quinol oxidase polypeptide II QoxA (EC:1.9.3.-)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
quinol oxidase polypeptide III QoxC (EC:1.9.3.-)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Quinol oxidase (SoxABC), cytochrome aa3 subunit (SoxB)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Quinol oxidase-2, subunit II (SoxH)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
quinol oxidase polypeptide IV QoxD (EC:1.9.3.-)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Heme bearing subunit I of the terminal oxidase (DoxB)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Terminal oxidase, small hydrophobic subunit (DoxE)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Terminal oxidase, subunit (DoxC)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
hypothetical cytochrome c oxidase polypeptide I	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide IIA (EC 1.9.3.1)	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
FixO3 cytochrome-c oxidase subunit	Terminal_cytochrome_C_oxidases	Respiration	Electron accepting reactions
Beta-glucuronidase (EC 3.2.1.31)	beta-glucuronide_utilization	Carbohydrates	
Glucuronide transporter UidB	beta-glucuronide_utilization	Carbohydrates	
Glucuronide transport facilitator UidC	beta-glucuronide_utilization	Carbohydrates	
Transcriptional repressor UidR	beta-glucuronide_utilization	Carbohydrates	
Glycosyltransferase (EC 2.4.1.-)	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
glycosyl transferase, family 2	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Glycosyl transferase, family 2	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Glycosyl transferase, group 1 (EC 2.-.-.-)	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Bacterial sugar transferase	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
hypothetical protein FP1254	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Oligosaccharide repeat unit polymerase Wzy	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Alpha-1,4-N-acetylgalactosamine transferase PglH (EC 2.4.1.-)	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Hexapeptide transferase family protein	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Glycosyl transferase, group 1	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Apolipoprotein N-acyltransferase (EC 2.3.1.-)	CBSS-376686.6.peg.291	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
UDP-glucose 4-epimerase (EC 5.1.3.2)	CBSS-296591.1.peg.2330	Clustering-based subsystems	
Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-)	CBSS-296591.1.peg.2330	Clustering-based subsystems	
Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-)	CBSS-296591.1.peg.2330	Clustering-based subsystems	
Putative glycosyltransferase	CBSS-296591.1.peg.2330	Clustering-based subsystems	
Nucleoside-diphosphate sugar epimerase/dehydratase	CBSS-296591.1.peg.2330	Clustering-based subsystems	
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	CBSS-296591.1.peg.2330	Clustering-based subsystems	
Nucleoside-diphosphate-sugar epimerases	CBSS-296591.1.peg.2330	Clustering-based subsystems	
UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)	CBSS-296591.1.peg.2330	Clustering-based subsystems	
UDP-glucuronate 5'-epimerase (EC 5.1.3.12)	CBSS-296591.1.peg.2330	Clustering-based subsystems	
Nucleotide sugar epimerase	CBSS-296591.1.peg.2330	Clustering-based subsystems	
NAD-dependent epimerase/dehydratase family protein	CBSS-296591.1.peg.2330	Clustering-based subsystems	
NAD-dependent epimerase/dehydratase	CBSS-296591.1.peg.2330	Clustering-based subsystems	
FIG093544: Chromosome partition protein smc	CBSS-293826.4.peg.2064	Clustering-based subsystems	
CBSS-293826.4.peg.2064: hypothetical protein	CBSS-293826.4.peg.2064	Clustering-based subsystems	
FIG050275: Chromosome partition protein smc	CBSS-293826.4.peg.2064	Clustering-based subsystems	
FIG081016: hypothetical protein	CBSS-293826.4.peg.2064	Clustering-based subsystems	
Uncharacterized metabolite ABC transporter in Enterobacteriaceae, permease protein EC-YbbP	Uncharacterized_metabolite_ABC_transporter_in_Enterobacteriaceae_YbbAP	Experimental Subsystems	
Uncharacterized metabolite ABC transporter in Enterobacteriaceae, ATP-binding protein EC-YbbA	Uncharacterized_metabolite_ABC_transporter_in_Enterobacteriaceae_YbbAP	Experimental Subsystems	
Multifunctional acyl-CoA thioesterase I, protease I, lysophospholipase L1	Uncharacterized_metabolite_ABC_transporter_in_Enterobacteriaceae_YbbAP	Experimental Subsystems	
Putative NAD(P)-dependent oxidoreductase EC-YbbO	Uncharacterized_metabolite_ABC_transporter_in_Enterobacteriaceae_YbbAP	Experimental Subsystems	
COG3118: Thioredoxin domain-containing protein EC-YbbN	Uncharacterized_metabolite_ABC_transporter_in_Enterobacteriaceae_YbbAP	Experimental Subsystems	
Phage tail fiber protein	Phage_structural	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage scaffold prohead core protein	Phage_structural	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysin, N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Phage_structural	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge protein	Phage_structural	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
ATP-dependent DNA helicase UvrD/PcrA	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase pcrA (EC 3.6.1.-)	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA, actinomycete paralog	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
putative ATP-dependent DNA helicase YjcD	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA/Rep, cyanobacterial paralog	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
Conjugative transposon transfer DNA helicase	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
DNA helicase IV	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase Rep	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA, clostridial paralog 2	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA, clostridial paralog	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
Plasmid conjugative transfer DNA helicase TrhI	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial type 1	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial type 2	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA/Rep	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
ATP-dependent DNA helicase UvrD/PcrA/Rep family, Francisella type	DNA_repair,_bacterial_UvrD_and_related_helicases	DNA Metabolism	DNA repair
Methane monooxygenase component A alpha chain (EC 1.14.13.25)	Soluble_methane_monooxygenase_(sMMO)	Carbohydrates	One-carbon Metabolism
Methane monooxygenase component A beta chain (EC 1.14.13.25)	Soluble_methane_monooxygenase_(sMMO)	Carbohydrates	One-carbon Metabolism
Methane monooxygenase component A gamma chain (EC 1.14.13.25)	Soluble_methane_monooxygenase_(sMMO)	Carbohydrates	One-carbon Metabolism
Methane monooxygenase component C (EC 1.14.13.25)	Soluble_methane_monooxygenase_(sMMO)	Carbohydrates	One-carbon Metabolism
Methane monooxygenase regulatory protein B	Soluble_methane_monooxygenase_(sMMO)	Carbohydrates	One-carbon Metabolism
Methane monooxygenase component D (EC 1.14.13.25)	Soluble_methane_monooxygenase_(sMMO)	Carbohydrates	One-carbon Metabolism
Osmoprotectant ABC transporter ATP-binding subunit YehX	Osmoprotectant_ABC_transporter_YehZYXW_of_Enterobacteriales	Stress Response	Osmotic stress
Osmoprotectant ABC transporter binding protein YehZ	Osmoprotectant_ABC_transporter_YehZYXW_of_Enterobacteriales	Stress Response	Osmotic stress
Osmoprotectant ABC transporter inner membrane protein YehW	Osmoprotectant_ABC_transporter_YehZYXW_of_Enterobacteriales	Stress Response	Osmotic stress
Osmoprotectant ABC transporter permease protein YehY	Osmoprotectant_ABC_transporter_YehZYXW_of_Enterobacteriales	Stress Response	Osmotic stress
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Exopolyphosphatase (EC 3.6.1.11)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate transport system regulatory protein PhoU	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Polyphosphate kinase (EC 2.7.4.1)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
response regulator DrrA	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate regulon transcriptional regulatory protein PhoB (SphR)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phosphate-specific outer membrane porin OprP	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Pyrophosphate-specific outer membrane porin OprO	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Distant similarity with phosphate transport system regulator	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Putative periplasmic phosphate-binding protein PstS (Mycoplasma type)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Putative phosphate ABC transporter, phosphate-binding component	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Putative periplasmic phosphate-binding protein PstS (Halobacteriales type)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Putative periplasmic phosphate-binding protein PstS (Catenulisporaceae type)	High_affinity_phosphate_transporter_and_control_of_PHO_regulon	Phosphorus Metabolism	
Phage recombination related endonuclease	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage-associated homing endonuclease	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage endonuclease	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage recombination related exonuclease (EC 3.1.11.-)	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage head completion protein	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage DNA end protector during packaging	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage DNA polymerase clamp loader	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
DNA polymerase (EC 2.7.7.7), phage-associated	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
DNA polymerase sliding clamp, phage-associated	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage DNA topoisomerase large subunit (EC 5.99.1.3)	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage RNA polymerase binding protein	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage translational repressor, regA	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Nudix hydrolase, phage-associated	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
dCTP pyrophosphatase (EC 3.6.1.12), phage-associated	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage head assembly chaperone	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage alc transcription terminator	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
Phage head vertex assembly chaperone	Phage_functions_that_need_a_home	Phages, Prophages, Transposable elements	Experimental
General secretion pathway protein A	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein B	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein C	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein D	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein E	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein F	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein G	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein H	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein I	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein J	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein K	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein L	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein M	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein N	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
General secretion pathway protein O	General_Secretion_Pathway	Membrane Transport	Protein secretion system, Type II
FIG020374: hypothetical protein	CBSS-211586.1.peg.3636	Clustering-based subsystems	
FIG020042: hypothetical protein	CBSS-211586.1.peg.3636	Clustering-based subsystems	
FIG020568: hypothetical protein	CBSS-211586.1.peg.3636	Clustering-based subsystems	
Multiple antibiotic resistance protein MarR	Multiple_Antibiotic_Resistance_MAR_locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multiple antibiotic resistance protein MarA	Multiple_Antibiotic_Resistance_MAR_locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multiple antibiotic resistance protein MarB	Multiple_Antibiotic_Resistance_MAR_locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multiple antibiotic resistance protein MarC	Multiple_Antibiotic_Resistance_MAR_locus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
A-factor biosynthesis protein AfsA	2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone_and_other_bacterial_morphogens	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Acyl coenzyme A dehydrogenase, BldA, contributes to the proper timing of aerial mycelium formation and antibiotic production	2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone_and_other_bacterial_morphogens	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Inducers of aerial mycelium formation biosynthesis protein BldG	2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone_and_other_bacterial_morphogens	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Pleiotropic negative regulator for morphological and physiological development in Streptomyces, BldD	2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone_and_other_bacterial_morphogens	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Putative methyltransferase,bldM, influences various aspects of colony growth and development	2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone_and_other_bacterial_morphogens	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phage endolysin	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage lysin	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage holin	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage endopeptidase	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage portal	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage lysozyme	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage peptidoglycan binding endopeptidase	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage rI lysis inhibition regulator	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage rIIA lysis inhibitor	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage maturase	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage rIIB lysis inhibitor	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
Phage lysozyme (EC 3.2.1.17)	Phage_entry_and_exit	Phages, Prophages, Transposable elements	Phage Host Interactions
GTP-binding protein EngA	CBSS-290633.1.peg.1906	Clustering-based subsystems	
Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)	CBSS-290633.1.peg.1906	Clustering-based subsystems	
Mlr7403 protein	CBSS-290633.1.peg.1906	Clustering-based subsystems	
Chromosomal replication initiator protein DnaA	DNA_replication_cluster_1	Clustering-based subsystems	
DNA gyrase subunit B (EC 5.99.1.3)	DNA_replication_cluster_1	Clustering-based subsystems	
DNA polymerase III beta subunit (EC 2.7.7.7)	DNA_replication_cluster_1	Clustering-based subsystems	
DNA recombination and repair protein RecF	DNA_replication_cluster_1	Clustering-based subsystems	
FIG002958: hypothetical protein	DNA_replication_cluster_1	Clustering-based subsystems	
cytochrome P450, family 2, subfamily A, polypeptide 6	Cyp450	Experimental Subsystems	
cytochrome P450, family 2, subfamily A, polypeptide 7 isoform 2	Cyp450	Experimental Subsystems	
Homo sapiens cytochrome P450, family 2, subfamily A, polypeptide 7 (CYP2A7), transcript variant 2	Cyp450	Experimental Subsystems	
cytochrome P450, family 2, subfamily A, polypeptide 7 isoform 1	Cyp450	Experimental Subsystems	
Hypoxia-inducible factor prolyl hydroxylase 1 (EC1.14.11.-)	Cyp450	Experimental Subsystems	
Melanoma derived growth regulatory protein precursor	Cyp450	Experimental Subsystems	
Inositol 1,4,5-trisphosphate 3-kinase C	Cyp450	Experimental Subsystems	
Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28)	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Toluate 1,2-dioxygenase alpha subunit	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Toluate 1,2-dioxygenase beta subunit	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Toluate 1,2-dioxygenase electron transfer component	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Toluene-4-monooxygenase, subunit TmoD	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
toluenesulfonate zinc-independent alcohol dehydrogenase	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
benzaldehyde dehydrogenase	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
xylene monooxygenase hydroxylase subunit	Toluene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phage tail tape measure	Phage_tail		
Phage major tail protein	Phage_tail		
Phage tail completion protein	Phage_tail		
Phage tail fiber	Phage_tail		
Phage tail assembly protein	Phage_tail		
Phage minor tail protein	Phage_tail		
Phage head-tail protein	Phage_tail		
Phage tail	Phage_tail		
Phage major spike protein	Phage_tail		
Phage tail fiber assembly protein	Phage_tail		
Phage baseplate assembly protein	Phage_tail		
Phage baseplate	Phage_tail		
Phage tail tube	Phage_tail		
Phage tail sheath	Phage_tail		
Phage baseplate tail tube cap	Phage_tail		
RnlA RNA ligase 1 and tail fiber attachment catalyst	Phage_tail		
Phage baseplate wedge subunit	Phage_tail		
Phage baseplate hub subunit	Phage_tail		
Phage long tail fiber	Phage_tail		
Phage short tail fiber	Phage_tail		
Phage baseplate tail tube initiator	Phage_tail		
Phage tail sheath stabilizer and completion protein	Phage_tail		
Phage baseplate wedge subunit and tail pin	Phage_tail		
Phage tailspike	Phage_tail		
Phage neck	Phage_tail		
Phage tail shaft	Phage_tail		
Unclassified tail protein	Phage_tail		
Phage tail tip	Phage_tail		
FIG023677: hypothetical protein	CBSS-399599.3.peg.3584	Clustering-based subsystems	
FIG005107: hypothetical protein	CBSS-399599.3.peg.3584	Clustering-based subsystems	
FIG024746: hypothetical protein	CBSS-399599.3.peg.3584	Clustering-based subsystems	
FIG035246: DoxX family protein	CBSS-399599.3.peg.3584	Clustering-based subsystems	
Transthyretin family protein	CBSS-205922.3.peg.1809	Clustering-based subsystems	Urate degradation
putative uricase	CBSS-205922.3.peg.1809	Clustering-based subsystems	Urate degradation
Ureidoglycolate hydrolase (EC 3.5.3.19)	CBSS-205922.3.peg.1809	Clustering-based subsystems	Urate degradation
conserved hypothetical membrane protein, paralogue of Y20848	CBSS-205922.3.peg.1809	Clustering-based subsystems	Urate degradation
Urate oxidase (EC 1.7.3.3)	CBSS-205922.3.peg.1809	Clustering-based subsystems	Urate degradation
salvage of nucleosides and nucleotides	CBSS-205922.3.peg.1809	Clustering-based subsystems	Urate degradation
ATP-binding protein p271	Tn552	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Tn552 transposase	Tn552	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Resolvase/integrase Bin	Tn552	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Beta-lactamase repressor BlaI	Tn552	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Beta-lactamase regulatory sensor-transducer BlaR1	Tn552	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Beta-lactamase (EC 3.5.2.6)	Tn552	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	polyprenyl_synthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	polyprenyl_synthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	polyprenyl_synthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	polyprenyl_synthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	polyprenyl_synthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	polyprenyl_synthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
undecaprenyl diphosphate synthase	polyprenyl_synthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydrolase of unknown specificity RsbQ, part of a novel [RsbQ - PAS domain] bacterial sensing module	Signal_transduction_module_[RsbQ_hydrolase_-_PAS_domain]	Experimental Subsystems	
PAS domain, part of [RsbQ - PAS domain] sensing module	Signal_transduction_module_[RsbQ_hydrolase_-_PAS_domain]	Experimental Subsystems	
Diguanylate cyclase/phosphodiesterase (GGDEF/EAL domains) associated with [RsbQ - PAS domain] sensing module	Signal_transduction_module_[RsbQ_hydrolase_-_PAS_domain]	Experimental Subsystems	
Two-component hybrid sensor and regulator associated with [RsbQ - PAS domain] sensing module	Signal_transduction_module_[RsbQ_hydrolase_-_PAS_domain]	Experimental Subsystems	
Positive regulator of phenol hydroxylase	Phenol_hydroxylase	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phenol hydroxylase, assembly protein DmpK	Phenol_hydroxylase	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phenol hydroxylase, P2 regulatory component DmpM (EC 1.14.13.7)	Phenol_hydroxylase	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phenol hydroxylase, P1 oxygenase component DmpL (EC 1.14.13.7)	Phenol_hydroxylase	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phenol hydroxylase, P3 oxygenase component DmpN (EC 1.14.13.7)	Phenol_hydroxylase	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phenol hydroxylase, P4 oxygenase component DmpO (EC 1.14.13.7)	Phenol_hydroxylase	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phenol hydroxylase, FAD- and [2Fe-2S]-containing reductase component DmpP	Phenol_hydroxylase	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8)	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8)	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Amino acid-binding ACT	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8)	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indolepyruvate oxidoreductase subunit IorA-like (EC 1.2.7.8)	Aromatic_amino_acid_interconversions_with_aryl_acids	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Beta N-acetyl-glucosaminidase (EC 3.2.1.52)	Murein_Hydrolases	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-)	Murein_Hydrolases	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)	Murein_Hydrolases	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)	Murein_Hydrolases	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)	Murein_Hydrolases	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase E (EC 3.2.1.-)	Murein_Hydrolases	Cell Wall and Capsule	
Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)	Murein_Hydrolases	Cell Wall and Capsule	
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Murein_Hydrolases	Cell Wall and Capsule	
Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)	Murein_Hydrolases	Cell Wall and Capsule	
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	Murein_Hydrolases	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-)	Murein_Hydrolases	Cell Wall and Capsule	
FUPA26 P-type ATPase	FUPA26_Corynebacterium_check	Experimental Subsystems	
Cu+ P-type ATPase	FUPA26_Corynebacterium_check	Experimental Subsystems	
Heavy-Metal transporting ATPase	FUPA26_Corynebacterium_check	Experimental Subsystems	
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	FUPA26_Corynebacterium_check	Experimental Subsystems	
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	FUPA26_Corynebacterium_check	Experimental Subsystems	
Porphobilinogen synthase (EC 4.2.1.24)	FUPA26_Corynebacterium_check	Experimental Subsystems	
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)	FUPA26_Corynebacterium_check	Experimental Subsystems	
Heavy-Metal transporting ATPase fragment	FUPA26_Corynebacterium_check	Experimental Subsystems	
Cu+ P-type ATPase fragment	FUPA26_Corynebacterium_check	Experimental Subsystems	
FUPA26 P-type ATPase fragment	FUPA26_Corynebacterium_check	Experimental Subsystems	
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)	Experimental Subsystems	
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)	Experimental Subsystems	
Ferrichrome transport system permease protein fhuB (TC 3.A.1.14.3)	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)	Experimental Subsystems	
Ferrichrome transport system permease protein fhuG	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)	Experimental Subsystems	
Ferrichrome-iron receptor	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)	Experimental Subsystems	
Ferrichrome transport ATP-binding protein fhuA (TC 1.B.14.1.4)	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)	Experimental Subsystems	
Flagellar hook-length control protein FliK	CBSS-190485.1.peg.4141	Experimental Subsystems	
Acetyltransferase, GNAT family (EC 2.3.1.-)	CBSS-190485.1.peg.4141	Experimental Subsystems	
Microcystin dependent protein	CBSS-190485.1.peg.4141	Experimental Subsystems	
Fibronectin type III domain protein	CBSS-190485.1.peg.4141	Experimental Subsystems	
Predicted cell-wall-anchored protein SasA (LPXTG motif)	CBSS-190485.1.peg.4141	Experimental Subsystems	
hypothetical protein NAS141_09886	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
Signal peptidase I (EC 3.4.21.89)	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
Ribonuclease III (EC 3.1.26.3)	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
GTP-binding protein Era	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
DNA recombination and repair protein RecO	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
Mll7752 protein	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	CBSS-176299.4.peg.1292	Clustering-based subsystems	Probably GTP or GMP signaling related
Phosphoheptose isomerase 1 (EC 5.3.1.-)	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-)	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Phosphoheptose isomerase 2 (EC 5.3.1.-)	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
D,D-heptose 7-phosphate kinase	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis heptosyltransferase HddD	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
GDP-L-fucose synthetase (EC 1.1.1.271)	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Methyltransferase, FkbM family protein	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Phosphoheptose isomerase (EC 5.3.1.-)	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
GDP-mannose 4,6-dehydratase (EC 4.2.1.47)	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis fatty acid synthase WcbR	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis protein WcbJ, NAD-dependent epimerase/dehydratase family	Capsular_heptose_biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Translation elongation factor G	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Translation elongation factor G-related protein	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Tetracycline resistance protein TetO	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Translation elongation factor G paralog	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Ribosome protection-type tetracycline resistance related proteins	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Ribosome protection-type tetracycline resistance related proteins, group 2	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Tetracycline resistance protein TetM	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Translation elongation factor G Stremptomyces paralog	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Oxytetracycline resistance protein OtrA	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Tetracycline resistance protein TetQ	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Tetracycline resistance protein TetP	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Translation elongation factor G, mitochondrial	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Translation elongation factor 2	Translation_elongation_factor_G_family	Protein Metabolism	Protein biosynthesis
Taurine-binding periplasmic protein tauA	Taurine_Utilization_Exp	Experimental Subsystems	
Taurine transport ATP-binding protein tauB	Taurine_Utilization_Exp	Experimental Subsystems	
Taurine transport system permease protein tauC	Taurine_Utilization_Exp	Experimental Subsystems	
Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)	Taurine_Utilization_Exp	Experimental Subsystems	
Taurine transporter substrate-binding protein	Taurine_Utilization_Exp	Experimental Subsystems	
Transcriptional regulator, MocR family, putative Taurine regulator tauR	Taurine_Utilization_Exp	Experimental Subsystems	
putative Taurine dehydrogenase	Taurine_Utilization_Exp	Experimental Subsystems	
Probable sulfate exporter tauZ	Taurine_Utilization_Exp	Experimental Subsystems	
putative Taurine transporter, periplasmatic component	Taurine_Utilization_Exp	Experimental Subsystems	
Taurine transporter, small permease component	Taurine_Utilization_Exp	Experimental Subsystems	
Taurine transporter, large permease component	Taurine_Utilization_Exp	Experimental Subsystems	
PUA-PAPS reductase like fusion	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Phosphosulfolactate synthase (EC 4.4.1.19)	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
2-phosphosulfolactate phosphatase (EC 3.1.3.71)	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
L-sulfolactate dehydrogenase (EC 1.1.1.272)	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79)	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79)	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Duf39 methanogenesis marker 16 metalloprotein	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Uncharacterized protein MJ0065	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Selenophosphate synthetase-related protein MJ0640	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Uncharacterized protein MJ0119	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Cysteate synthase	CoenzymeM_Archaea	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
LemA protein	CBSS-393011.11.peg.386	Clustering-based subsystems	
Heat shock protein HtpX (EC 3.4.24.-)	CBSS-393011.11.peg.386	Clustering-based subsystems	
Heat shock protein HtpX	CBSS-393011.11.peg.386	Clustering-based subsystems	
FIG017973: domain of unknown function	CBSS-393011.11.peg.386	Clustering-based subsystems	
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) [PQS biosynthesis]	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Anthranilate synthase, aminase component (EC 4.1.3.27)	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Anthranilate synthase, aminase component (EC 4.1.3.27) [PQS biosynthesis]	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
BarA-associated response regulator UvrY (= GacA = SirA)	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Excinuclease ABC subunit C	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Kynureninase (EC 3.7.1.3)	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Kynurenine formamidase, bacterial (EC 3.5.1.9)	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Multiple virulence factor regulator MvfR/PqsR	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
N-acyl-L-homoserine lactone synthetase LasI	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
PQS biosynthesis protein PqsA, anthranilate-CoA ligase (EC 6.2.1.32)	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
PQS biosynthesis protein PqsB, similar to 3-oxoacyl-[acyl-carrier-protein] synthase III	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
PQS biosynthesis protein PqsC, similar to 3-oxoacyl-[acyl-carrier-protein] synthase III	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
PQS biosynthesis protein PqsD, similar to 3-oxoacyl-[acyl-carrier-protein] synthase III	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
PQS biosynthesis protein PqsH, similar to FAD-dependent monooxygenases	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
PqsE, quinolone signal response protein	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Transcriptional regulator LasR	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Tryptophan 2,3-dioxygenase (EC 1.13.11.11)	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Hypothetical protein in AHQ biosynthetic operon	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Putative 3-oxoacyl-[acyl-carrier-protein] synthase III in AHQ biosynthetic operon, related to PqsB	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Putative non-ribosomal peptide synthetase in AHQ biosynthetic operon	Pseudomonas_quinolone_signal_PQS	Regulation and Cell signaling	
Internalin-like protein (LPXTG motif) Lin0290 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lin0372 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lin0661 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lin0739 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lin0740 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lin1204 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0171 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0327 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0331 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0514 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0610 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0732 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo1136 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo1289 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo2396 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein Lin0295 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein Lin2537 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein Lmo0549 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein Lmo2445 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin A (LPXTG motif)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin B (GW modules)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin C	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin E (LPXTG motif)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin G (LPXTG motif)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin H (LPXTG motif)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0333 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0409 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo0801 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo1290 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo2026 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmo2821 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein Lmo2027 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein Lmo2470 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin C2 (LPXTG motif)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin D (LPXTG motif)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
internalin, putative	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
internalin, putative (LPXTG motif)	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Internalin-like protein (LPXTG motif) Lmof0365 homolog	Listeria_surface_proteins:_Internalin-like_proteins	Virulence, Disease and Defense	Invasion and intracellular resistance
Phage major tail protein	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage minor tail protein	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail length tape-measure protein	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage major tail shaft protein	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly chaperone	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly protein	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly protein I	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail completion protein	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail length tape-measure protein 1	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tape measure	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail sheath monomer	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail connector	Phage_tail_proteins_2	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
ATP-utilizing enzyme of the PP-loop superfamily	CBSS-479436.4.peg.472	Clustering-based subsystems	
NCAIR mutase (PurE)-related protein	CBSS-479436.4.peg.472	Clustering-based subsystems	
FIG099352: hypothetical protein	CBSS-479436.4.peg.472	Clustering-based subsystems	
carbon monoxide dehydrogenase E protein	Carbon_monoxide_dehydrogenase_maturation_factors	Respiration	
carbon monoxide dehydrogenase D protein	Carbon_monoxide_dehydrogenase_maturation_factors	Respiration	
Carbon monoxide dehydrogenase F protein	Carbon_monoxide_dehydrogenase_maturation_factors	Respiration	
carbon monoxide dehydrogenase G protein	Carbon_monoxide_dehydrogenase_maturation_factors	Respiration	
Putative Carbon monoxide dehydrogenase subunit, maturation factor	Carbon_monoxide_dehydrogenase_maturation_factors	Respiration	
Putative amidotransferase similar to cobyric acid synthase	Putative_amidotransferase_similar_to_cobyric_acid_synthase	Experimental Subsystems	
proposed amino acid ligase found clustered with an amidotransferase	Putative_amidotransferase_similar_to_cobyric_acid_synthase	Experimental Subsystems	
methanogen enzyme similar to murein synthesis amino acid ligase	Putative_amidotransferase_similar_to_cobyric_acid_synthase	Experimental Subsystems	
Biofilm PGA outer membrane secretin PgaA	Biofilm_Adhesin_Biosynthesis	Regulation and Cell signaling	Quorum sensing and biofilm formation
Biofilm PGA synthesis deacetylase PgaB (EC 3.-)	Biofilm_Adhesin_Biosynthesis	Regulation and Cell signaling	Quorum sensing and biofilm formation
Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-)	Biofilm_Adhesin_Biosynthesis	Regulation and Cell signaling	Quorum sensing and biofilm formation
Biofilm PGA synthesis auxiliary protein PgaD	Biofilm_Adhesin_Biosynthesis	Regulation and Cell signaling	Quorum sensing and biofilm formation
Mlr0777 protein	CBSS-235.1.peg.567	Clustering-based subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	CBSS-235.1.peg.567	Clustering-based subsystems	
GTP-binding protein	CBSS-235.1.peg.567	Clustering-based subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	CBSS-235.1.peg.567	Clustering-based subsystems	
Amino acid regulated cytosolic protein	CBSS-235.1.peg.567	Clustering-based subsystems	
Mlr0789 protein	CBSS-235.1.peg.567	Clustering-based subsystems	
C4-type zinc finger protein, DksA/TraR family	CBSS-235.1.peg.567	Clustering-based subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	CBSS-235.1.peg.567	Clustering-based subsystems	
Phosphohistidine phosphatase SixA	CBSS-235.1.peg.567	Clustering-based subsystems	
Phage NinB DNA recombination	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinC	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage antitermination protein N	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage antitermination protein Q	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinG rap recombination	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinX	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinY	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinF	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinH	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinD	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinE	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage NinA	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage Nin protein	Phage_nin_genes_-_N-independent_survival	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
All-trans-retinol 13,14-reductase precursor (EC 1.3.99.23)	Retinol_metabolism	Experimental Subsystems	
Aldehyde dehydrogenase 1A3 (EC 1.2.1.5) (Aldehyde dehydrogenase 6) (Retinaldehyde dehydrogenase 3) (RALDH-3)	Retinol_metabolism	Experimental Subsystems	
Retinal dehydrogenase 2 (EC 1.2.1.36) (Aldehyde dehydrogenase family 1 member A2)	Retinol_metabolism	Experimental Subsystems	
Aldehyde dehydrogenase, cytosolic, family 1, subfamily A7 (EC 1.2.1.3)	Retinol_metabolism	Experimental Subsystems	
21 kDa hemolysin precursor	CBSS-160492.1.peg.550	Clustering-based subsystems	
LppC putative lipoprotein	CBSS-160492.1.peg.550	Clustering-based subsystems	
Phosphoheptose isomerase (EC 5.3.1.-)	CBSS-160492.1.peg.550	Clustering-based subsystems	
Predicted endonuclease distantly related to archaeal Holliday junction resolvase	CBSS-160492.1.peg.550	Clustering-based subsystems	
rRNA small subunit methyltransferase I	CBSS-160492.1.peg.550	Clustering-based subsystems	
TRAP transporter solute receptor, unknown substrate 5	TRAP_Transporter_unknown_substrate_5	Experimental Subsystems	
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5	TRAP_Transporter_unknown_substrate_5	Experimental Subsystems	
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5	TRAP_Transporter_unknown_substrate_5	Experimental Subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Mevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	Mevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)	Mevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Mevalonate kinase (EC 2.7.1.36)	Mevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phosphomevalonate kinase (EC 2.7.4.2)	Mevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Diphosphomevalonate decarboxylase (EC 4.1.1.33)	Mevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
COG1272: Predicted membrane protein hemolysin III homolog	COG1272_Experimental	Experimental Subsystems	
Hypothetical protein DUF194, DegV family	COG1272_Experimental	Experimental Subsystems	
Lipase/Acylhydrolase with GDSL-like motif	COG1272_Experimental	Experimental Subsystems	
FIG041762: hypothetical protein	Mycobacterium_virulence_operon_with_Esat6-like_proteins	Virulence	
ESAT-6-like protein EsxK	Mycobacterium_virulence_operon_with_Esat6-like_proteins	Virulence	
ESAT-6-like protein EsxL	Mycobacterium_virulence_operon_with_Esat6-like_proteins	Virulence	
Coenzyme B synthesis from 2-oxoglutarate: steps 4, 7, 8, 11, and 12 [large subunit]	A_module_for_synthesis_of_coenzyme_B_from_2-oxoglutarate	Experimental Subsystems	
Coenzyme B synthesis from 2-oxoglutarate: steps 1, 6, and 10	A_module_for_synthesis_of_coenzyme_B_from_2-oxoglutarate	Experimental Subsystems	
Coenzyme B synthesis from 2-oxoglutarate: steps 4, 7, 8, 11, and 12 [small subunit]	A_module_for_synthesis_of_coenzyme_B_from_2-oxoglutarate	Experimental Subsystems	
Coenzyme B synthesis from 2-oxoglutarate: steps 5, 9, and 13	A_module_for_synthesis_of_coenzyme_B_from_2-oxoglutarate	Experimental Subsystems	
Squalene--hopene cyclase (EC 5.4.99.17)	CBSS-320388.3.peg.3759	Clustering-based subsystems	Carotenoid biosynthesis
Phytoene synthase (EC 2.5.1.32)	CBSS-320388.3.peg.3759	Clustering-based subsystems	Carotenoid biosynthesis
S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	CBSS-320388.3.peg.3759	Clustering-based subsystems	Carotenoid biosynthesis
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	CBSS-320388.3.peg.3759	Clustering-based subsystems	Carotenoid biosynthesis
Phytoene desaturase (EC 1.14.99.-)	CBSS-320388.3.peg.3759	Clustering-based subsystems	Carotenoid biosynthesis
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	ZZ_rdo_scratch	Experimental Subsystems	
Mediator of hyperadherence YidE	Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region	Virulence, Disease and Defense	Adhesion
16 kDa heat shock protein B	Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region	Virulence, Disease and Defense	Adhesion
16 kDa heat shock protein A	Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region	Virulence, Disease and Defense	Adhesion
Uncharacterized protein YidR	Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region	Virulence, Disease and Defense	Adhesion
Outer membrane lipoprotein YidQ	Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region	Virulence, Disease and Defense	Adhesion
Uncharacterized protein YidS	Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region	Virulence, Disease and Defense	Adhesion
HTH-type transcriptional regulator YidP	Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region	Virulence, Disease and Defense	Adhesion
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Pterin_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Pterin_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	Pterin_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Pterin_metabolism	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phytoene synthase (EC 2.5.1.32)	At3g61080_homolog	Experimental Subsystems	
Chemotaxis protein CheC -- inhibitor of MCP methylation	At3g61080_homolog	Experimental Subsystems	
Fructosamine kinase family protein, At3g61080 homolog	At3g61080_homolog	Experimental Subsystems	
Phytoene dehydrogenase (EC 1.14.99.-)	At3g61080_homolog	Experimental Subsystems	
Putative methyl-accepting chemotaxis protein VC1535	At3g61080_homolog	Experimental Subsystems	
Mitochondrial processing peptidase-like protein (EC 3.4.24.64)	At3g61080_homolog	Experimental Subsystems	
Neurosporene desaturase (EC 1.-.-.-)	At3g61080_homolog	Experimental Subsystems	
Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-)	At3g61080_homolog	Experimental Subsystems	
Hypothetical membrane protein, PMM1568 homolog	At3g61080_homolog	Experimental Subsystems	
Metal-dependent protease of the PAD1/JAB1 superfamily	At3g61080_homolog	Experimental Subsystems	
Multifunctional mycocerosic acid synthase membrane-associated mas (Multi-functional membrane-associated mycocerosic acid synthase mas)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative lipoprotein LppX precursor	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative membrane protein MmpL7	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Glycosyltransferase PglI (EC 2.4.1.-)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative conserved polyketide synthase-associated protein PapA5	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative uncharacterized protein BCG_1584c	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
PROBABLE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1533	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
POSSIBLE RHAMNOSYL TRANSFERASE WBBL2	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Probable alcohol dehydrogenase Adh (EC 1.1.1.1)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative uncharacterized protein BCG_1583	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
hypothetical protein Rv1517	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative uncharacterized protein BCG_1587	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Uncharacterized protein Rv1520/MT1570	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative uncharacterized protein BCG_1585	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Fatty-acid-CoA ligase FadD24	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Uncharacterized protein Rv1526c/MT1577	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative fatty-acid--CoA ligase fadD25 (EC 6.2.1.-) (Acyl-CoA synthetase)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
ISMt3 transposase B2	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
hypothetical protein Rv1516c	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Acyl-CoA synthetase	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Probable polyketide synthase Pks5	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Polyketide synthase Pks5	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Polyketide synthase	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative glycosyltransferase	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Polyketide synthase associated protein PapA1	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Probable fatty-acid-CoA ligase FadD23 (EC 6.2.1.-)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative membrane protein	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Probable methyltransferase (EC 2.1.1.-)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative membrane protein MmpL12	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Polyketide synthase Pks1	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Uncharacterized glycosyltransferase Rv1524/MT1575 (EC 2.-.-.-)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative fatty-acid--CoA ligase fadD28 (EC 6.2.1.-) (Acyl-CoA synthetase)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
POSSIBLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA2	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Putative membrane protein MmpL10	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
Transporter, MMPL family	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
PROBABLE POLYKETIDE SYNTHASE PKS1	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
MmpL4_5	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
putative polyketide synthase	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
acyl-CoA synthetase	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
PROBABLE MULTIFUNCTIONAL MYCOCEROSIC ACID SYNTHASE MEMBRANE-ASSOCIATED MAS	CBSS-83332.1.peg.1531	Clustering-based subsystems	Mycocerosic acid and related Polyketides biosynthesis clusters
FUPA31 P-type ATPase	Family_31_FUPA31_P-type_ATPase		
Protein involved in catabolism of external DNA, possilbe methyltransferase activity	Family_31_FUPA31_P-type_ATPase		
Calcium/proton exchanger	Family_31_FUPA31_P-type_ATPase		
S-adenosylmethionine synthetase (EC 2.5.1.6)	Family_31_FUPA31_P-type_ATPase		
Exopolysaccharide synthesis, ExoD	Family_31_FUPA31_P-type_ATPase		
aspartate/glutamate/uridylate kinase	Family_31_FUPA31_P-type_ATPase		
Purine nucleotide synthesis repressor	Purine_nucleotide_synthesis_regulator	Nucleosides and Nucleotides	Purines
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reductase transcriptional regulator NrdR	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Ribonucleotide reduction protein NrdI	Ribonucleotide_reduction	Nucleosides and Nucleotides	
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	Ribonucleotide_reduction	Nucleosides and Nucleotides	
DedA family inner membrane protein YdjZ	DedA_family_of_inner_membrane_proteins		
DedA protein	DedA_family_of_inner_membrane_proteins		
DedA family protein paralog	DedA_family_of_inner_membrane_proteins		
DedA family inner membrane protein YghB	DedA_family_of_inner_membrane_proteins		
DedA family inner membrane protein YqjA	DedA_family_of_inner_membrane_proteins		
DedA family inner membrane protein YabI	DedA_family_of_inner_membrane_proteins		
DedA family inner membrane protein YohD	DedA_family_of_inner_membrane_proteins		
DedA family inner membrane protein YdjX	DedA_family_of_inner_membrane_proteins		
DedA family membrane protein	DedA_family_of_inner_membrane_proteins		
Achromobactin biosynthesis protein AcsA	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Achromobactin biosynthesis protein AcsB, HpcH/HpaI aldolase family	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Achromobactin biosynthesis protein AcsD	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Achromobactin biosynthesis protein AcsE, Orn/DAP/Arg decarboxylase family	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Achromobactin biosynthesis protein AcsF	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Permease of the major facilitator superfamily in achromobactin biosynthesis operon	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Putative achromobactin biosynthesis protein, related to 2-demethylmenaquinone methyltransferase	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Siderophore achromobactin ABC transporter, ATPase component	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Siderophore achromobactin ABC transporter, permease protein	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Siderophore achromobactin ABC transporter, substrate-binding protein	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
TonB-dependent ferric achromobactin receptor protein	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Uncharacterized Fe-S protein in siderophore biosynthesis operon	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Uncharacterized siderophore S biosynthesis protein, AcsC-like	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Outer membrane receptor proteins, likely involved in siderophore uptake	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Permease of the major facilitator superfamily in uncharacterized siderophore S biosynthesis operon	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Probable Lysine n(6)-hydroxylase associated with siderophore S biosynthesis (EC 1.14.13.59)	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Putative siderophore biosynthesis protein, related to 2-demethylmenaquinone methyltransferase	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Uncharacterized siderophore S biosynthesis AcsA-like protein	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Uncharacterized siderophore S biosynthesis protein, AcsD-like	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
Achromobactin biosynthesis protein AcsC	Siderophore_Achromobactin	Iron acquisition and metabolism	Siderophores
FIG146262: hypothetical protein	CBSS-349161.4.peg.2417	Clustering-based subsystems	
Putative tRNA-m1A22 methylase	CBSS-349161.4.peg.2417	Clustering-based subsystems	
DNA primase (EC 2.7.7.-)	CBSS-349161.4.peg.2417	Clustering-based subsystems	
RNA polymerase sigma factor RpoD	CBSS-349161.4.peg.2417	Clustering-based subsystems	
Stationary phase secreted protein TasA, major protein component of biofilm matrix	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
YqxM protein, required for localization of TasA to extracellular matrix	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
SinI protein, antagonist of SinR	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Slr, positive regulator of the extracellular matrix biosynthesis operon yqxM-sipW-tasA	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Secreted and spore coat-associated protein 1, similar to biofilm matrix component TasA and to camelysin	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Secreted and spore coat-associated protein 2, similar to biofilm matrix component TasA and to camelysin	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Immune inhibitor A metalloprotease	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Sporulation-associated protease N-terminal domain protein	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
PlcR activating protein PapR, quorum-sensing effector	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Subtilase family domain protein	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Cell envelope-bound metalloprotease, Camelysin (EC 3.4.24.-)	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Hypothetical protein in cluster with SinR and SinI	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Transcriptional activator PlcR	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin	Bacillus_biofilm_matrix_protein_component_TasA_and_homologs	Dormancy and Sporulation	
Salicylate hydroxylase (EC 1.14.13.1)	Salicylate_ester_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
AreA (Esterase for aryl ester catabolic pathway) (EC 3.1.1.-)	Salicylate_ester_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
AreB (Aryl-alcohol dehydrogenase) (EC 1.1.1.90)	Salicylate_ester_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
putative facilitator of salicylate uptake	Salicylate_ester_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
regulator protein,AreR	Salicylate_ester_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
regulator protein,SalR	Salicylate_ester_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
salicylate esterase	Salicylate_ester_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Chemotaxis protein CheC -- inhibitor of MCP methylation	CBSS-323850.3.peg.3142	Clustering-based subsystems	Chemotaxis, response regulators
diguanylate cyclase (GGDEF domain) with PAS/PAC sensor	CBSS-323850.3.peg.3142	Clustering-based subsystems	Chemotaxis, response regulators
Light-harvesting LHI, alpha subunit	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Light-harvesting LHI, beta subunit	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Photosynthetic reaction center L subunit	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Photosynthetic reaction center M subunit	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Photosynthetic reaction center H subunit	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Putative photosynthetic complex assembly protein	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Photosynthetic reaction center cytochrome c subunit	Photosystem_II-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Kappa-fimbriae usher protein	&#954;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Kappa-fimbriae chaperone protein	&#954;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Kappa-fimbriae major subunit	&#954;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Kappa-fimbriae probable subunit	&#954;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Kappa-fimbriae regulatory protein	&#954;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Monooxygenase component A	Predicted_mycobacterial_monooxygenase	Clustering-based subsystems	Carbohydrates
Monooxygenase, FAD- and [2Fe-2S]-containing component B	Predicted_mycobacterial_monooxygenase	Clustering-based subsystems	Carbohydrates
Monooxygenase component C	Predicted_mycobacterial_monooxygenase	Clustering-based subsystems	Carbohydrates
Vibrioferrin ligase/carboxylase protein PvsA	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Vibrioferrin amide bond forming protein PvsB	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Vibrioferrin membrane-spanning transport protein PvsC	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Vibrioferrin amide bond forming protein PvsD	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Vibrioferrin decarboxylase protein PvsE	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Vibrioferrin receptor PvuA	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Ferric siderophore receptor PsuA	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Ferrichrome ABC transporter, periplasmic iron-binding protein PvuB	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Ferrichrome ABC transporter (permease) PvuC	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Ferrichrome ABC transporter (permease) PvuD	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Ferrichrome ABC transporter (ATP binding subunit) PvuE	Vibrioferrin_synthesis	Iron acquisition and metabolism	Siderophores
Tricarboxylate transport protein TctC	TC_IRG1	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	TC_IRG1	Experimental Subsystems	
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)	TC_IRG1	Experimental Subsystems	
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)	TC_IRG1	Experimental Subsystems	
Niacin transporter NiaP	TC_IRG1	Experimental Subsystems	
Immune-responsive protein 1	TC_IRG1	Experimental Subsystems	
Predicted regulator PutR for proline utilization, GntR family	TC_IRG1	Experimental Subsystems	
ABC transporter in pyoverdin gene cluster, ATP-binding component	TC_IRG1	Experimental Subsystems	
Amidase clustered with urea ABC transporter and nitrile hydratase functions	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Urea ABC transporter, urea binding protein	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Urea ABC transporter, permease protein UrtB	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Urea ABC transporter, permease protein UrtC	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Urea ABC transporter, ATPase protein UrtD	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Urea ABC transporter, ATPase protein UrtE	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Cobalt-containing nitrile hydratase subunit alpha (EC 4.2.1.84)	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Cobalt-containing nitrile hydratase subunit beta (EC 4.2.1.84)	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Aliphatic amidase amiE (EC 3.5.1.4)	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Putative nitrile hydratase regulator clustered with urea transport	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Formamidase (EC 3.5.1.49)	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Urea channel UreI	Amidase_clustered_with_urea_and_nitrile_hydratase_functions	Nitrogen Metabolism	
Dipicolinate synthase subunit A (EC 4.2.1.52)	Dipicolinate_Synthesis	Dormancy and Sporulation	Spore DNA protection
Dipicolinate synthase subunit B	Dipicolinate_Synthesis	Dormancy and Sporulation	Spore DNA protection
Tricarboxylate transport membrane protein TctA	Tricarboxylate_transport_system	Membrane Transport	
Tricarboxylate transport protein TctB	Tricarboxylate_transport_system	Membrane Transport	
Tricarboxylate transport protein TctC	Tricarboxylate_transport_system	Membrane Transport	
Tricarboxylate transport transcriptional regulator TctD	Tricarboxylate_transport_system	Membrane Transport	
Tricarboxylate transport sensor protein TctE	Tricarboxylate_transport_system	Membrane Transport	
Ammonia monooxygenase	Tricarboxylate_transport_system	Membrane Transport	
Tricarboxylate porin OpdH	Tricarboxylate_transport_system	Membrane Transport	
Aspartate carbamoyltransferase (EC 2.1.3.2)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Dihydroorotase (EC 3.5.2.3)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Orotate phosphoribosyltransferase (EC 2.4.2.10)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Pyrimidine operon regulatory protein PyrR	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Uracil permease	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Uracil phosphoribosyltransferase (EC 2.4.2.9)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Aspartate carbamoyltransferase regulatory chain (PyrI)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Dihydroorotate dehydrogenase (EC 1.3.3.1)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Carbamoyl-phosphate synthase large chain A (EC 6.3.5.5)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Carbamoyl-phosphate synthase large chain B (EC 6.3.5.5)	De_Novo_Pyrimidine_Synthesis	Nucleosides and Nucleotides	Pyrimidines
Methane/phenol/toluene hydroxylase	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
Heat shock protein 60 family chaperone GroEL	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
Methane monooxygenase component A alpha chain (EC 1.14.13.25)	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
methane monooxygenase component C( EC:1.14.13.25 )	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
Predicted metal-dependent hydrolase of the TIM-barrel fold	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
Methane monooxygenase regulatory protein B	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
blr3675	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
putative alcohol dehydrogenase (EC 1.1.1.1)	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
Diguanylate cyclase	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
blr3682	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
Transcriptional activator of acetoin/glycerol metabolism	CBSS-246196.1.peg.1974	Clustering-based subsystems	methane monooxygenase cluster (? can be phenol-monoox in some organisms?)
Transposase for insertion sequence-like element IS431mec	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein 1A/1B (PBP1)	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin binding protein PBP4	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
tRNA-dependent lipid II--glycine ligase (FmhB)	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemA, factor essential for methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemB, factor involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemC, factor involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemD, factor involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
LytH protein involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrA protein involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrB protein involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtA protein involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtC (MrpF) protein involved in methicillin resistance	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhA protein of FemAB family	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhC protein of FemAB family	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanyl transfer protein DltB	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Poly(glycerophosphate chain) D-alanine transfer protein DltD	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RNA polymerase sigma factor SigB	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance repressor MecI	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase regulatory sensor-transducer BlaR1	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase repressor BlaI	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HTH domain protein SA1665, binds to mecA promoter region	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtB (Mrp) protein involved in methicillin resistance and cell wall biosynthesis	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1, truncated	Methicillin_resistance_in_Staphylococci	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytoplasmic, CoA-independent, aldehyde dehydrogenase (EC 1.2.1.3)	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Lipoprotein, ToxR-activated gene, TagA	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
TCP pilin signal peptidase, TcpA processing	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
TCP pilus virulence regulatory protein ToxT, transcription activator	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilin A	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein B	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein C, outer membrane protein	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein D	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein E, anchors TcpT to membrane	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein F, putative outer membrane channel for TcpA extrusion	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein H, transcriptional activator of ToxT promoter	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein I, chemoreceptor, negative regulator of TcpA	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein P, transcriptional activator of ToxT promoter	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein Q	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein R	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein S	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Toxin co-regulated pilus biosynthesis protein T, putative ATP-binding translocase of TcpA	Vibrio_pathogenicity_island	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
FUPA27 P-type ATPase	Family_27_FUPA27_P-type_ATPase		
Type cbb3 cytochrome oxidase biogenesis protein CcoH	Family_27_FUPA27_P-type_ATPase		
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation	Family_27_FUPA27_P-type_ATPase		
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Family_27_FUPA27_P-type_ATPase		
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Family_27_FUPA27_P-type_ATPase		
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Family_27_FUPA27_P-type_ATPase		
putative cytochrome c oxidase, subunit I	Family_27_FUPA27_P-type_ATPase		
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Family_27_FUPA27_P-type_ATPase		
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion	Family_27_FUPA27_P-type_ATPase		
Putative analog of CcoH, COG3198	Family_27_FUPA27_P-type_ATPase		
membrane-bounded cytochrome biogenesis DsbD/cycZ-like domain	Family_27_FUPA27_P-type_ATPase		
Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein	Family_27_FUPA27_P-type_ATPase		
Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	Lipoprotein_Biosynthesis	Protein Metabolism	Protein processing and modification
Lipoprotein signal peptidase (EC 3.4.23.36)	Lipoprotein_Biosynthesis	Protein Metabolism	Protein processing and modification
Apolipoprotein N-acyltransferase (EC 2.3.1.-)	Lipoprotein_Biosynthesis	Protein Metabolism	Protein processing and modification
Mycofactocin precursor	mycofactocin_system	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mycofactocin system small protein	mycofactocin_system	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mycofactocin radical SAM maturase	mycofactocin_system	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mycofactocin system glycosyltransferase	mycofactocin_system	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mycofactocin system transcriptional regulator	mycofactocin_system	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mycofactocin system heme/flavin dehydrogenase	mycofactocin_system	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	CBSS-306254.1.peg.1508	Clustering-based subsystems	Probably Pyrimidine biosynthesis-related
Hypothetical protein probably associated with Carbamoyl-phosphate synthase	CBSS-306254.1.peg.1508	Clustering-based subsystems	Probably Pyrimidine biosynthesis-related
GTP cyclohydrolase II homolog	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Uracil phosphoribosyltransferase (EC 2.4.2.9)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Possible pyrimidine-degrading protein DUF1688	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Uridine kinase (EC 2.7.1.48)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Urease alpha subunit (EC 3.5.1.5)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Urease beta subunit (EC 3.5.1.5)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Urea carboxylase (EC 6.3.4.6)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Allophanate hydrolase (EC 3.5.1.54)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Possible pyrimidine regulator in Saccharomyces kluyveri	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Urease gamma subunit (EC 3.5.1.5)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Dihydropyrimidinase (EC 3.5.2.2)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Beta-ureidopropionase (EC 3.5.1.6)	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Possible malonate-semialdehyde dehydrogenase in pyrimidine catabolism	Novel_non-oxidative_pathway_of_Uracil_catabolism	Nucleosides and Nucleotides	Pyrimidines
Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like	PFGI-1-like_cluster_1	Clustering-based subsystems	
DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
FIG004780: hypothetical protein in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
FIG141694: hypothetical protein in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
FIG141751: hypothetical protein in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
Protein with ParB-like nuclease domain in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
Replicative DNA helicase (EC 3.6.1.-) in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
FIG034647: hypothetical protein in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
FIG041388: hypothetical protein in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
Integrase regulator R	PFGI-1-like_cluster_1	Clustering-based subsystems	
Single-stranded DNA-binding protein in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
Transcriptional regulator in PFGI-1-like cluster	PFGI-1-like_cluster_1	Clustering-based subsystems	
Hypothetical protein USSDB1A	USS-DB-1	Clustering-based subsystems	
Sugar ABC transporter, periplasmic sugar-binding protein USSDB1B	USS-DB-1	Clustering-based subsystems	
Sugar ABC transporter, sugar permease protein 1 USSDB1C	USS-DB-1	Clustering-based subsystems	
Sugar ABC transporter, sugar permease protein 2 USSDB1D	USS-DB-1	Clustering-based subsystems	
Hypothetical protein USSDB1E	USS-DB-1	Clustering-based subsystems	
Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)	CBSS-393124.3.peg.2657	Clustering-based subsystems	
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	CBSS-393124.3.peg.2657	Clustering-based subsystems	
ADA regulatory protein	CBSS-393124.3.peg.2657	Clustering-based subsystems	
Transaldolase (EC 2.2.1.2)	Phage_carbon_metabolism	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
6-phosphogluconate dehydrogenase, 6PGDH (EC 1.1.1.44)	Phage_carbon_metabolism	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cyanophage-encoded transaldolase, TalC	Phage_carbon_metabolism	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
PQQ-dependent oxidoreductase, gdhB family	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Coenzyme PQQ synthesis protein E	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Cytochrome c550, associated with quino(hemo)protein alcohol dehydrogenase (EC 1.1.99.8)	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Methanol dehydrogenase large subunit protein (EC 1.1.99.8)	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-)	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Cytochrome c553i	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Putative cytochrome c, associated with quino(hemo)protein alcohol dehydrogenase	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Uncharacterized dehydrogenase [pyrroloquinoline-quinone]	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Methanol dehydrogenase, small subunit (EC 1.1.99.8)	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldA	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldB	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Quinohemoprotein alcohol dehydrogenase, type III (EC:1.1.99.8), large subunit	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Quinohemoprotein alcohol dehydrogenase, type III (EC:1.1.99.8), triheme cytochrome c subunit	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Quinohemoprotein alcohol dehydrogenase, type III (EC:1.1.99.8), 15 kDa subunit	PQQ-dependent_quinoprotein_dehydrogenases	Experimental Subsystems	
Outer spore coat protein E	Exosporium	Dormancy and Sporulation	
Exosporium protein B @ Spore coat protein G	Exosporium	Dormancy and Sporulation	
Exosporium protein C	Exosporium	Dormancy and Sporulation	
Exosporium protein D-like protein	Exosporium	Dormancy and Sporulation	
Exosporium protein D	Exosporium	Dormancy and Sporulation	
Exosporium protein E	Exosporium	Dormancy and Sporulation	
Exosporium protein F	Exosporium	Dormancy and Sporulation	
Exosporium protein G	Exosporium	Dormancy and Sporulation	
Exosporium protein J	Exosporium	Dormancy and Sporulation	
BclA protein	Exosporium	Dormancy and Sporulation	
Exosporium protein K	Exosporium	Dormancy and Sporulation	
Alanine racemase (EC 5.1.1.1) in exosporium	Exosporium	Dormancy and Sporulation	
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) in exosporium	Exosporium	Dormancy and Sporulation	
Exosporium protein Y	Exosporium	Dormancy and Sporulation	
Exosporium protein A	Exosporium	Dormancy and Sporulation	
Exosporium SOD	Exosporium	Dormancy and Sporulation	
2,4-diaminopentanoate dehydrogenase (EC 1.4.1.12)	Anaerobic_Oxidative_Degradation_of_L-Ornithine	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
2-amino-4-ketopentanoate thiolase, alpha subunit	Anaerobic_Oxidative_Degradation_of_L-Ornithine	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
2-amino-4-ketopentanoate thiolase, beta subunit	Anaerobic_Oxidative_Degradation_of_L-Ornithine	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
D-Ornithine 4,5-aminomutase S subunit (EC 5.4.3.5)	Anaerobic_Oxidative_Degradation_of_L-Ornithine	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
D-Ornithine 4,5-aminomutase E subunit (EC 5.4.3.5)	Anaerobic_Oxidative_Degradation_of_L-Ornithine	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Probable reactivating factor for D-ornithine aminomutase	Anaerobic_Oxidative_Degradation_of_L-Ornithine	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine racemase (EC 5.1.1.12)	Anaerobic_Oxidative_Degradation_of_L-Ornithine	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Translation elongation factor Ts	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation elongation factor Tu	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation elongation factor G	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation elongation factor P	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation elongation factor LepA	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation elongation factor G-related protein	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation elongation factor P-related protein	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
Translation elongation factor G paralog	Translation_elongation_factors_bacterial	Protein Metabolism	Protein biosynthesis
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Aerobactin siderophore receptor IutA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Amide synthase component of siderophore synthetase	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Bacterioferritin	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Bacterioferritin-associated ferredoxin	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Catechol siderophore ABC transporter, substrate-binding protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric aerobactin ABC transporter, ATPase component	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric aerobactin ABC transporter, periplasmic substrate binding protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric aerobactin ABC transporter, permease component	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric iron ABC transporter, ATP-binding protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric iron ABC transporter, iron-binding protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric iron ABC transporter, permease protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric uptake regulation protein FUR	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vulnibactin receptor VuuA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferrous iron transport protein A	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferrous iron transport protein B	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferrous iron transport protein C	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Hemin ABC transporter, permease protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Hypothetical protein in aerobactin uptake cluster	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Hypothetical protein in cluster with HutR, VCA0066 homolog	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Hypothetical protein in cluster with HutR, VCA0067 homolog	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Isochorismate pyruvate-lyase of siderophore biosynthesis	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Non-ribosomal peptide synthetase modules, siderophore biosynthesis	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Phosphopantetheinyl transferase component of siderophore synthetase (EC 2.7.8.-)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Protease II (EC 3.4.21.83)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Putative heme iron utilization protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
TonB-dependent heme and hemoglobin receptor HutA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
TonB-dependent heme receptor HutR	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
TonB-dependent receptor	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Transcriptional repressor of aerobactin receptor iutR	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Vulnibactin utilization protein VuuB	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Enterobactin receptor IrgA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Enterobactin receptor VctA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin receptor ViuA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, ATP-binding protein (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, ATP-binding protein ViuC (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein ViuD (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein ViuG (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, substrate-binding protein VctP (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, substrate-binding protein ViuP (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferrichrome-iron receptor	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Hypothetical protein colocalized with Enterobactin receptor VctA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Iron-regulated virulence regulatory protein irgB	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Putative TonB-dependent heme receptor HasR	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Transcriptional regulator near Vibriobactin biosynthetic gene custer	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Transcriptional regulator, VCA0231 ortholog	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Vibriobactin utilization protein ViuB	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Catechol siderophore ABC transporter, ATP-binding component	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Catechol siderophore ABC transporter, permease component	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Utilization protein for unknown catechol-siderophore X	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein VctD (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6)	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Regulatory small RNA involved in iron homeostasis RyhB	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Ferric hydroxamate outer membrane receptor FhuA	Iron_acquisition_in_Vibrio	Iron acquisition and metabolism	
Iron-sulfur cluster regulator IscR	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Rrf2 family transcriptional regulator	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Rrf2 family transcriptional regulator, group III	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Nitrite-sensitive transcriptional repressor NsrR	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Predicted transcriptional regulator of sulfate transport, Rrf2 family	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Iron-responsive repressor RirA	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Predicted transcriptional regulator of cysteine synthase, Rrf2 family	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Hmc operon transcriptional regulator Rrf2	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Predicted transcriptional regulator of 4-carboxymuconolactone decarboxylase, Rrf2 family	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
Predicted transcriptional regulator of NADH dehydrogenase, Rrf2 family	Rrf2_family_transcriptional_regulators	RNA Metabolism	Transcription
clavaldehyde dehydrogenase	Clavulanic_acid_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
P-hydroxybenzoate hydroxylase (EC 1.14.13.2)	CBSS-223283.1.peg.1869	Experimental Subsystems	
Transcriptional regulator PobR, AraC family	CBSS-223283.1.peg.1869	Experimental Subsystems	
4-hydroxybenzoate transporter	CBSS-223283.1.peg.1869	Experimental Subsystems	
Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism	CBSS-479435.4.peg.2736	Clustering-based subsystems	Related to ribose or hydroxymethylpyrimidine metabolism
GLUCOSE-FRUCTOSE OXIDOREDUCTASE (EC 1.1.99.28)	CBSS-479435.4.peg.2736	Clustering-based subsystems	Related to ribose or hydroxymethylpyrimidine metabolism
Inner membrane protein translocase component YidC, OxaA protein	Divergent_RNA_modification_related_clusters	Clustering-based subsystems	
Predicted nucleoside phosphatase	Divergent_RNA_modification_related_clusters	Clustering-based subsystems	
FIG005935: membrane protein	Divergent_RNA_modification_related_clusters	Clustering-based subsystems	
FIG005986: HD family hydrolase	Divergent_RNA_modification_related_clusters	Clustering-based subsystems	
FIG011178: rRNA methylase	Divergent_RNA_modification_related_clusters	Clustering-based subsystems	
FIG011684: hypothetical protein	Divergent_RNA_modification_related_clusters	Clustering-based subsystems	
Accessory colonization factor AcfA	Accessory_colonization_factor	Virulence, Disease and Defense	Adhesion
Accessory colonization factor AcfB	Accessory_colonization_factor	Virulence, Disease and Defense	Adhesion
Accessory colonization factor AcfC	Accessory_colonization_factor	Virulence, Disease and Defense	Adhesion
Accessory colonization factor AcfD precursor	Accessory_colonization_factor	Virulence, Disease and Defense	Adhesion
TagE protein	Accessory_colonization_factor	Virulence, Disease and Defense	Adhesion
Septation ring formation regulator EzrA	CBSS-393130.3.peg.794	Clustering-based subsystems	Cell Division
CDS_ID OB2202	CBSS-393130.3.peg.794	Clustering-based subsystems	Cell Division
SSU ribosomal protein S4p (S9e)	CBSS-393130.3.peg.794	Clustering-based subsystems	Cell Division
Cysteine desulfurase (EC 2.8.1.7)	CBSS-393130.3.peg.794	Clustering-based subsystems	Cell Division
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	CBSS-393130.3.peg.794	Clustering-based subsystems	Cell Division
Thiamine biosynthesis protein ThiI	CBSS-393130.3.peg.794	Clustering-based subsystems	Cell Division
Transcriptional regulator LuxZ	Control_of_Swarming_in_Vibrio_and_Shewanella_species	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Aminotransferase ScrA	Control_of_Swarming_in_Vibrio_and_Shewanella_species	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Extracellular solute binding protein ScrB	Control_of_Swarming_in_Vibrio_and_Shewanella_species	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Sensory box/GGDEF family protein ScrC (involved in swarmer cell regulation)	Control_of_Swarming_in_Vibrio_and_Shewanella_species	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
DNA-binding protein H-NS	Nucleoid-associated_proteins_in_Bacteria	DNA Metabolism	
Haemolysin expression modulating protein	Nucleoid-associated_proteins_in_Bacteria	DNA Metabolism	
DNA-binding protein stpA	Nucleoid-associated_proteins_in_Bacteria	DNA Metabolism	
Cnu protein	Nucleoid-associated_proteins_in_Bacteria	DNA Metabolism	
Haemolysin expression modulating protein paralog	Nucleoid-associated_proteins_in_Bacteria	DNA Metabolism	
Inner membrane component of tripartite multidrug resistance system	Multidrug_Resistance,_Tripartite_Systems_Found_in_Gram_Negative_Bacteria	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Membrane fusion component of tripartite multidrug resistance system	Multidrug_Resistance,_Tripartite_Systems_Found_in_Gram_Negative_Bacteria	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Outer membrane component of tripartite multidrug resistance system	Multidrug_Resistance,_Tripartite_Systems_Found_in_Gram_Negative_Bacteria	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Gene Transfer Agent (GTA) ORFG06	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Gene Transfer Agent (GTA) ORFG07	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Gene Transfer Agent (GTA) ORFG08	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Gene Transfer Agent (GTA) ORFG09	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Gene Transfer Agent (GTA) ORFG10	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Gene Transfer Agent (GTA) ORFG11	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Gene Transfer Agent (GTA) ORFG12	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Gene Transfer Agent (GTA) ORFG15	Gene_Transfer_Agent_(GTA)_Genes	Phages, Prophages, Transposable elements	
Siderophore [Alcaligin] biosynthetic enzyme (EC 1.14.13.59)	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Siderophore [Alcaligin] biosynthesis complex, short chain	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Siderophore [Alcaligin] biosynthesis complex, long chain	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Putative iron reductase in siderophore [Alcaligin] cluster	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Iron-sulfur protein in siderophore [Alcaligin] cluster	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Transcriptional regulator AlcR in siderophore [Alcaligin] cluster	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Siderophore [Alcaligin] translocase AlcS	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Iron-siderophore [Alcaligin] receptor	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Membrane efflux protein associated with [Alcaligin] siderophore cluster	Alcaligin_Siderophore	Iron acquisition and metabolism	Siderophores
Lipase chaperone	Lipase_chaperone	Experimental Subsystems	
Lipase (EC 3.1.1.3)	Lipase_chaperone	Experimental Subsystems	
Bacteriorhodopsin	Bacteriorhodopsin	Photosynthesis	
Transcription regulator Bat, regulates bacteriorhodopsin synthesis	Bacteriorhodopsin	Photosynthesis	
Bacteriorhodopsin related protein Brp, likely catalyses oxidative cleavage of betacarotene to retinal	Bacteriorhodopsin	Photosynthesis	
Bacteriorhodopsin related protein Blp	Bacteriorhodopsin	Photosynthesis	
Protein CrtB1 involved in bacteriorhodopsin synthesis	Bacteriorhodopsin	Photosynthesis	
Brp-like protein	Bacteriorhodopsin	Photosynthesis	
Geranylgeranyl-diphosphate geranylgeranyl-transferase	Bacteriorhodopsin	Photosynthesis	
LacI family transcriptional regulator, row 218	Unknown_oligosaccharide_utilization_Sde_1396	Carbohydrates	Di- and oligosaccharides
Family 1 glycosyl hydrolase, row 954	Unknown_oligosaccharide_utilization_Sde_1396	Carbohydrates	Di- and oligosaccharides
1st GPH family transporter in unknown oligosaccharide utilization Sde 1396	Unknown_oligosaccharide_utilization_Sde_1396	Carbohydrates	Di- and oligosaccharides
Family 3 glycosyl hydrolase in unknown oligosaccharide utilization Sde 1396	Unknown_oligosaccharide_utilization_Sde_1396	Carbohydrates	Di- and oligosaccharides
TonB-dependent receptor in unknown oligosaccharide utilization Sde 1396	Unknown_oligosaccharide_utilization_Sde_1396	Carbohydrates	Di- and oligosaccharides
2nd GPH family transporter in unknown oligosaccharide utilization Sde 1396	Unknown_oligosaccharide_utilization_Sde_1396	Carbohydrates	Di- and oligosaccharides
TRAP transporter solute receptor, unknown substrate 7	TRAP_Transporter_unknown_substrate_7	Experimental Subsystems	
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 7	TRAP_Transporter_unknown_substrate_7	Experimental Subsystems	
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 7	TRAP_Transporter_unknown_substrate_7	Experimental Subsystems	
Beta-lactamase (EC 3.5.2.6)	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1, truncated	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Copper-translocating P-type ATPase (EC 3.6.3.4)	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Beta-lactamase repressor BlaI	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Beta-lactamase regulatory sensor-transducer BlaR1	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Methicillin resistance repressor MecI	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Probable beta-lactamase ybxI precursor (EC 3.5.2.6)	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Regulatory protein BlaR1	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Transcriptional repressor, BlaI/MecI family	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Regulatory sensor-transducer, BlaR1/MecR1 family	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Transcriptional regulator, MecI family	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Beta-lactamase class A	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Negative transcriptional regulator-copper transport operon	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Peptidase M48, Ste24p precursor	BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation	Virulence	Resistance to antibiotics and toxic compounds
Phage DNA binding ATPase	Phage_Dual_Exonuclease_Exclusion	Phages, Prophages, Transposable elements	Superinfection Exclusion
Phage DNA binding protein HkaK	Phage_Dual_Exonuclease_Exclusion	Phages, Prophages, Transposable elements	Superinfection Exclusion
Exodeoxyribonuclease X (EC 3.1.11.-)	Phage_Dual_Exonuclease_Exclusion	Phages, Prophages, Transposable elements	Superinfection Exclusion
Predicted 3'-5' exonuclease related to the exonuclease domain of PolB	Phage_Dual_Exonuclease_Exclusion	Phages, Prophages, Transposable elements	Superinfection Exclusion
Phage DNA and RNA binding protein	Phage_Dual_Exonuclease_Exclusion	Phages, Prophages, Transposable elements	Superinfection Exclusion
Phage resistance protein	Phage_Dual_Exonuclease_Exclusion	Phages, Prophages, Transposable elements	Superinfection Exclusion
Phage DNA repair protein	Phage_Dual_Exonuclease_Exclusion	Phages, Prophages, Transposable elements	Superinfection Exclusion
Creatinine amidohydrolase (EC 3.5.2.10)	Experimental_-Creatinine_degradation	Experimental Subsystems	
Cytosine deaminase (EC 3.5.4.1)	Experimental_-Creatinine_degradation	Experimental Subsystems	
Creatinase (EC 3.5.3.3)	Experimental_-Creatinine_degradation	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	Experimental_-Creatinine_degradation	Experimental Subsystems	
Sarcosine oxidase beta subunit (EC 1.5.3.1)	Experimental_-Creatinine_degradation	Experimental Subsystems	
Sarcosine oxidase alpha subunit (EC 1.5.3.1)	Experimental_-Creatinine_degradation	Experimental Subsystems	
Glycosyl transferase, group 2 family protein	CBSS-190486.1.peg.2083	Experimental Subsystems	
LmbE-like protein	CBSS-190486.1.peg.2083	Experimental Subsystems	
Acyl-CoA dehydrogenase/oxidase domain protein	CBSS-190486.1.peg.2083	Experimental Subsystems	
Methyltransferase type 12	CBSS-190486.1.peg.2083	Experimental Subsystems	
Heme-degrading oxygenase, IsdG-like	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
FIG078613: hypothetical protein in iron scavenging cluster	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
Heme ABC transporter, permease protein HmuU	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
Heme ABC transporter, cell surface heme and hemoprotein receptor HmuT	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
Heme ABC transporter, ATPase component HmuV	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
hypothetical protein in Thermus iron scavenging cluster	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites	Iron_Scavenging_cluster_in_Thermus	Iron acquisition and metabolism	
Transcriptional (co)regulator CytR	CytR_regulation	Regulation and Cell signaling	
Cyclic AMP receptor protein	CytR_regulation	Regulation and Cell signaling	
Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16)	N-heterocyclic_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)	N-heterocyclic_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase	N-heterocyclic_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
RNA:NAD 2'-phosphotransferase	tRNA_splicing	RNA Metabolism	RNA processing and modification
tRNA-intron endonuclease (EC 3.1.27.9)	tRNA_splicing	RNA Metabolism	RNA processing and modification
ADP-ribose 1"-phosphate phophatase	tRNA_splicing	RNA Metabolism	RNA processing and modification
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	Allophanate_hydrolase_2_and_Biotin_carboxylase_cluster	Clustering-based subsystems	
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	Allophanate_hydrolase_2_and_Biotin_carboxylase_cluster	Clustering-based subsystems	
Biotin carboxyl carrier protein	Allophanate_hydrolase_2_and_Biotin_carboxylase_cluster	Clustering-based subsystems	
Biotin carboxylase (EC 6.3.4.14)	Allophanate_hydrolase_2_and_Biotin_carboxylase_cluster	Clustering-based subsystems	
Lactam utilization protein LamB	Allophanate_hydrolase_2_and_Biotin_carboxylase_cluster	Clustering-based subsystems	
Mn2+/Fe2+ transporter, NRAMP family	Allophanate_hydrolase_2_and_Biotin_carboxylase_cluster	Clustering-based subsystems	
FIG005080: Possible exported protein	Nit1_MVDC	Experimental Subsystems	
Omega amidase (Nit2 homolog)	Nit1_MVDC	Experimental Subsystems	
FIG003879: Predicted amidohydrolase; Nit	Nit1_MVDC	Experimental Subsystems	
TldD protein, part of TldE/TldD proteolytic complex	Nit1_MVDC	Experimental Subsystems	
hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase	A_predicted_deacylase_that_co-occurs_with_Ribosomal_protein_S6_glutaminyl_transferase	Clustering-based subsystems	
Ribosomal protein S6 glutaminyl transferase	A_predicted_deacylase_that_co-occurs_with_Ribosomal_protein_S6_glutaminyl_transferase	Clustering-based subsystems	
FIG003737: Predicted deacylase	A_predicted_deacylase_that_co-occurs_with_Ribosomal_protein_S6_glutaminyl_transferase	Clustering-based subsystems	
Glycerate kinase (EC 2.7.1.31)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
D-glycerate transporter (predicted)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Sugar diacid utilization regulator SdaR	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
D-galactarate dehydratase (EC 4.2.1.42)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
D-glucarate permease	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Glucarate dehydratase (EC 4.2.1.40)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Predicted 5-dehydro-4-deoxyglucarate regulator YcbG	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
D-glycerate 2-kinase (EC 2.7.1.-)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
D-galactarate permease	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Glucarate dehydratase related protein YgcY	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
mandelate racemase family protein Pfl_3283	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Predicted D-glucarate or D-galactorate regulator, GntR family	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Predicted D-glucarate or D-galactorate regulator, IclR family	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Glycerate-2-kinase (EC 2.7.1.165)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	Carbohydrates	Monosaccharides
Proline 2-methylase for pyrrolysine biosynthesis	Pyrrolysine	Protein Metabolism	Protein biosynthesis
Proline reductase for pyrrolysine biosynthesis	Pyrrolysine	Protein Metabolism	Protein biosynthesis
Pyrrolysine synthetase	Pyrrolysine	Protein Metabolism	Protein biosynthesis
Pyrrolysyl-tRNA synthetase (EC 6.1.1.26)	Pyrrolysine	Protein Metabolism	Protein biosynthesis
pyrrolysine-containing	Pyrrolysine	Protein Metabolism	Protein biosynthesis
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	Glutaredoxins	Stress Response	Oxidative stress
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Glutaredoxins	Stress Response	Oxidative stress
Peptide chain release factor 1	Glutaredoxins	Stress Response	Oxidative stress
Riboflavin kinase (EC 2.7.1.26)	Glutaredoxins	Stress Response	Oxidative stress
tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	Glutaredoxins	Stress Response	Oxidative stress
Rhodanese-like domain protein	Glutaredoxins	Stress Response	Oxidative stress
Cell wall endopeptidase, family M23/M37	Glutaredoxins	Stress Response	Oxidative stress
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	Glutaredoxins	Stress Response	Oxidative stress
Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-)	Glutaredoxins	Stress Response	Oxidative stress
23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-)	Glutaredoxins	Stress Response	Oxidative stress
Cell division protein BolA	Glutaredoxins	Stress Response	Oxidative stress
Chaperone protein HscA	Glutaredoxins	Stress Response	Oxidative stress
Chaperone protein HscB	Glutaredoxins	Stress Response	Oxidative stress
Competence protein F homolog, phosphoribosyltransferase domain	Glutaredoxins	Stress Response	Oxidative stress
FIG136845: Rhodanese-related sulfurtransferase	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin 1	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin 2	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin-related protein	Glutaredoxins	Stress Response	Oxidative stress
Glutathione synthetase (EC 6.3.2.3)	Glutaredoxins	Stress Response	Oxidative stress
Phosphocarrier protein, nitrogen regulation associated	Glutaredoxins	Stress Response	Oxidative stress
Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state)	Glutaredoxins	Stress Response	Oxidative stress
TrkA, Potassium channel-family protein	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin 3 (Grx2)	Glutaredoxins	Stress Response	Oxidative stress
Uncharacterized monothiol glutaredoxin ycf64-like	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin 3 (Grx1)	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin 3 (Grx3)	Glutaredoxins	Stress Response	Oxidative stress
Glutaredoxin 3	Glutaredoxins	Stress Response	Oxidative stress
Thiol-disulfide isomerase	Glutaredoxins	Stress Response	Oxidative stress
Probable monothiol glutaredoxin GrlA	Glutaredoxins	Stress Response	Oxidative stress
Multidrug resistance protein Atm1	Glutaredoxins	Stress Response	Oxidative stress
ATP/GTP-binding site motif A (P-loop) :BolA-like protein	Glutaredoxins	Stress Response	Oxidative stress
ATP/GTP-binding protein, SA1392 homolog	SA_hypothetical	Experimental Subsystems	
GTP-binding protein Era	SA_hypothetical	Experimental Subsystems	
DNA repair protein recO	SA_hypothetical	Experimental Subsystems	
DNA primase (EC 2.7.7.-)	SA_hypothetical	Experimental Subsystems	
RNA polymerase sigma factor RpoD	SA_hypothetical	Experimental Subsystems	
Pyruvate,phosphate dikinase (EC 2.7.9.1)	SA_hypothetical	Experimental Subsystems	
CBS domain protein, lmo1865 homolog	SA_hypothetical	Experimental Subsystems	
FIG002060: uncharacterized protein YggL	CBSS-83333.1.peg.2911	Clustering-based subsystems	hypthetical clustered with tRNA modification
tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	CBSS-83333.1.peg.2911	Clustering-based subsystems	hypthetical clustered with tRNA modification
Peptidase B (EC 3.4.11.23)	CBSS-292414.1.peg.69	Clustering-based subsystems	
Carbonic anhydrase (EC 4.2.1.1)	CBSS-292414.1.peg.69	Clustering-based subsystems	
FIG095838: hypothetical protein	CBSS-292414.1.peg.69	Clustering-based subsystems	
CBSS-292414.1.peg.69: NLP/P60 family protein	CBSS-292414.1.peg.69	Clustering-based subsystems	
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12)	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
Thiol:disulfide oxidoreductase associated with MetSO reductase	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
Two-component sensor kinase yesM (EC 2.7.3.-), associated with MetSO reductase	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
Two-component response regulator yesN, associated with MetSO reductase	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
Selenoprotein O and cysteine-containing homologs	Peptide_methionine_sulfoxide_reductase	Protein Metabolism	Protein processing and modification
FIG011155: Zinc carboxypeptidase-related protein	An_M14_metallocarboxypeptidase_and_a_probable_hydrolase_cluster	Clustering-based subsystems	M14 metallocarboxypeptidases
FIG084569: hydrolase, alpha/beta fold family	An_M14_metallocarboxypeptidase_and_a_probable_hydrolase_cluster	Clustering-based subsystems	M14 metallocarboxypeptidases
Coenzyme B synthesis from 2-oxoglutarate: steps 1, 6, and 10	Coenzyme_B_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme B
Coenzyme B synthesis from 2-oxoglutarate: steps 4, 7, 8, 11, and 12 [large subunit]	Coenzyme_B_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme B
Coenzyme B synthesis from 2-oxoglutarate: steps 4, 7, 8, 11, and 12 [small subunit]	Coenzyme_B_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme B
Coenzyme B synthesis from 2-oxoglutarate: steps 5, 9, and 13	Coenzyme_B_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme B
Signal peptidase I (EC 3.4.21.89)	Signal_peptidase	Protein Metabolism	Protein processing and modification
Lipoprotein signal peptidase (EC 3.4.23.36)	Signal_peptidase	Protein Metabolism	Protein processing and modification
Signal peptidase, type IV - prepilin/preflagellin	Signal_peptidase	Protein Metabolism	Protein processing and modification
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	PhoR-PhoB_two-component_regulatory_system	Clustering-based subsystems	Phosphate metabolism
Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	PhoR-PhoB_two-component_regulatory_system	Clustering-based subsystems	Phosphate metabolism
Phosphate regulon transcriptional regulatory protein PhoB (SphR)	PhoR-PhoB_two-component_regulatory_system	Clustering-based subsystems	Phosphate metabolism
Phosphate regulon metal ion transporter containing CBS domains	PhoR-PhoB_two-component_regulatory_system	Clustering-based subsystems	Phosphate metabolism
Heterocyst formation inhibiting signaling peptide PatS	Heterocyst_formation_in_cyanobacteria	Cell Division and Cell Cycle	
Protein FraG required for filament integrity and heterocyst maturation	Heterocyst_formation_in_cyanobacteria	Cell Division and Cell Cycle	
Main regulator of heterocyst differentiation HetR	Heterocyst_formation_in_cyanobacteria	Cell Division and Cell Cycle	
Nitrogen-responsive response regulator NrrA	Heterocyst_formation_in_cyanobacteria	Cell Division and Cell Cycle	
Global nitrogen regulatory protein, CRP family of transcriptional regulators	Heterocyst_formation_in_cyanobacteria	Cell Division and Cell Cycle	
Heterocyst differentiation protein HetP	Heterocyst_formation_in_cyanobacteria	Cell Division and Cell Cycle	
Heterocyst differentiation protein HetC	Heterocyst_formation_in_cyanobacteria	Cell Division and Cell Cycle	
Phosphoglycerate kinase (EC 2.7.2.3)	CBSS-316056.14.peg.4707	Clustering-based subsystems	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	CBSS-316056.14.peg.4707	Clustering-based subsystems	
Transketolase (EC 2.2.1.1)	CBSS-316056.14.peg.4707	Clustering-based subsystems	
FIG026765: hypothetical protein	CBSS-316056.14.peg.4707	Clustering-based subsystems	
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	CBSS-316056.14.peg.4707	Clustering-based subsystems	
Teicoplanin resistance associated membrane protein TcaA	Teicoplanin-resistance_in_Staphylococcus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Teicoplanin resistance associated membrane protein TcaB	Teicoplanin-resistance_in_Staphylococcus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Teicoplanin-resistance associated HTH-type transcriptional regulator TcaR	Teicoplanin-resistance_in_Staphylococcus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Similar to Teicoplanin resistance associated membrane protein TcaA	Teicoplanin-resistance_in_Staphylococcus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-fimbriae usher protein	&#946;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Beta-fimbriae probable major subunit	&#946;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Beta-fimbriae chaperone protein	&#946;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
FIG015287: Zinc protease	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
Cell division protein FtsX	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
RNA polymerase sigma factor RpoH	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
FIG146452: Zinc protease	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
FIG146397: peptidase, M16 family	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
FIG146458: peptidase, M16 family	Heat_shock_Cell_division_Proteases_and_a_Methyltransferase	Clustering-based subsystems	heat shock, cell division, proteases, and a methyltransferase
SSU ribosomal protein S2p (SAe), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S3p (S3e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S4p (S9e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S7p (S5e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S8p (S15Ae), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S11p (S14e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S12p (S23e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S14p (S29e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S15p (S13e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S16p, chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S18p, chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S19p (S15e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S20p, chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S1p, chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S5p (S2e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S6p, chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S9p (S16e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S10p (S20e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S13p (S18e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S17p (S11e), chloroplast	Ribosome_SSU_chloroplast	Protein Metabolism	Protein biosynthesis
HCOMODA decarboxylase	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cumate dioxygenase small subunit (CmtAc)	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cumate dioxygenase large subunit (CmtAb)	p-cymene_degradation	Metabolism of Aromatic Compounds	
2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC)	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cumate dioxygenase ferredoxin reductase subunit (CmtAa)	p-cymene_degradation	Metabolism of Aromatic Compounds	
P-cymene methyl hydroxylase	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cymene monooxygenase, hydroxylase subunit(CymAa)	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cumic aldehyde dehydrogenase (CymC) [EC:1.2.1.3]	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cumic alcohol dehydrogenase (CymB)	p-cymene_degradation	Metabolism of Aromatic Compounds	
P-cymene monooxygenase, reductase subunit(CymAb) (EC 1.17.1.-)	p-cymene_degradation	Metabolism of Aromatic Compounds	
2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase(CmtB) (EC 1.1.1.100)	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cumate dioxygenase ferredoxin	p-cymene_degradation	Metabolism of Aromatic Compounds	
p-cymene degradation operon transcriptional regulator	p-cymene_degradation	Metabolism of Aromatic Compounds	
2-hydroxypenta-2,4-dienoate hydratase (CmtF) (EC 4.2.1.-)	p-cymene_degradation	Metabolism of Aromatic Compounds	
HOMODA hydrolase (CmtE) (EC 3.7.1.-)	p-cymene_degradation	Metabolism of Aromatic Compounds	
Inducible Fructanase (EC 3.2.1.80), FruB	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
PTS system, fructose- and mannose-inducible IIA component (EC 2.7.1.69)	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
PTS system, fructose- and mannose-inducible IIB component (EC 2.7.1.69)	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
PTS system, fructose- and mannose-inducible IIC component (EC 2.7.1.69)	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
PTS system, fructose- and mannose-inducible IID component (EC 2.7.1.69)	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
PTS system, fructose- and mannose-inducible putative EII component	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Phosphocarrier protein of PTS system	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
fructose response regulator of fruA and EII fructose/mannose	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
fructose sensor histidine kinase	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
periplasmic fructose-binding protein component of signal transduction system LevQ	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
periplasmic fructose-binding protein component of signal transduction system LevT	Fructose_and_Mannose_Inducible_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Phosphonopyruvate hydrolase (EC 3.11.1.3)	Phosphonoalanine_utilization	Amino Acids and Derivatives	
Phosphonoalanine aminotransferase	Phosphonoalanine_utilization	Amino Acids and Derivatives	
Phosphonoalanine and/or phosphonopyruvate ABC transporter permease protein	Phosphonoalanine_utilization	Amino Acids and Derivatives	
Phosphonoalanine and/or phosphonopyruvate ABC transporter ATP-binding protein	Phosphonoalanine_utilization	Amino Acids and Derivatives	
Phosphonoalanine and/or phosphonopyruvate ABC transporter periplasmic binding component	Phosphonoalanine_utilization	Amino Acids and Derivatives	
Phosphonoalanine and phosphonopyruvate utilization regulatory protein, LysR family	Phosphonoalanine_utilization	Amino Acids and Derivatives	
D-glycerate 2-kinase (EC 2.7.1.-)	Glycerate_metabolism	Carbohydrates	Organic acids
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Glycerate_metabolism	Carbohydrates	Organic acids
Hydroxypyruvate reductase (EC 1.1.1.81)	Glycerate_metabolism	Carbohydrates	Organic acids
Tartrate decarboxylase (EC 4.1.1.73)	Glycerate_metabolism	Carbohydrates	Organic acids
Glyoxylate carboligase (EC 4.1.1.47)	Glycerate_metabolism	Carbohydrates	Organic acids
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	Glycerate_metabolism	Carbohydrates	Organic acids
Hydroxypyruvate isomerase (EC 5.3.1.22)	Glycerate_metabolism	Carbohydrates	Organic acids
Pyruvate kinase (EC 2.7.1.40)	Glycerate_metabolism	Carbohydrates	Organic acids
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)	Glycerate_metabolism	Carbohydrates	Organic acids
Glycerate kinase (EC 2.7.1.31)	Glycerate_metabolism	Carbohydrates	Organic acids
D-glycerate transporter (predicted)	Glycerate_metabolism	Carbohydrates	Organic acids
D-glycerate 3-kinase (EC 2.7.1.31), plant type	Glycerate_metabolism	Carbohydrates	Organic acids
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	CBSS-349161.4.peg.2427	Clustering-based subsystems	
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	CBSS-349161.4.peg.2427	Clustering-based subsystems	
Pyruvate,phosphate dikinase (EC 2.7.9.1)	CBSS-349161.4.peg.2427	Clustering-based subsystems	
CBS domain protein, lmo1865 homolog	CBSS-349161.4.peg.2427	Clustering-based subsystems	
ATP/GTP-binding protein, SA1392 homolog	CBSS-349161.4.peg.2427	Clustering-based subsystems	
Glycyl-tRNA synthetase (EC 6.1.1.14)	CBSS-349161.4.peg.2427	Clustering-based subsystems	
RNA polymerase sigma-70 factor	CBSS-313593.3.peg.2729	Clustering-based subsystems	
FIG111991: hypothetical protein	CBSS-313593.3.peg.2729	Clustering-based subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	Lux_Enoyl-CoA_CL	Experimental Subsystems	
3-methylmercaptopropionyl-CoA ligase (DmdB)	Lux_Enoyl-CoA_CL	Experimental Subsystems	
LarA: implicated in lactate racemization	Lactate_Racemization	Miscellaneous	Lactate racemization
LarB: implicated in lactate racemization	Lactate_Racemization	Miscellaneous	Lactate racemization
LarC1: implicated in lactate racemization	Lactate_Racemization	Miscellaneous	Lactate racemization
LarC2: implicated in lactate racemization	Lactate_Racemization	Miscellaneous	Lactate racemization
GlpF1: implicated in lactate racemization	Lactate_Racemization	Miscellaneous	Lactate racemization
LarE: implicated in lactate racemization	Lactate_Racemization	Miscellaneous	Lactate racemization
FIG001881: hydrolase of alkaline phosphatase superfamily	CBSS-211586.1.peg.1979	Clustering-based subsystems	
FIG002927: hypothetical protein	CBSS-211586.1.peg.1979	Clustering-based subsystems	
Nucleoid-associated protein NdpA	CBSS-211586.1.peg.1979	Clustering-based subsystems	
Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Methylmalonyl-CoA epimerase (EC 5.1.99.1)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Methylmalonyl-CoA mutase (EC 5.4.99.2)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Methylmalonyl-CoA decarboxylase, alpha chain (EC 4.1.1.41)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Methylmalonyl-CoA decarboxylase, beta chain (EC 4.1.1.41)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Biotin carboxylase of Propionyl-CoA carboxylase (EC 6.3.4.14)	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Biotin carboxyl carrier protein of Propionyl-CoA carboxylase	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Na+/H+-dicarboxylate symporters	Propionyl-CoA_to_Succinyl-CoA_Module	Carbohydrates	Organic acids
Putative aminomethyl transferase domain	CBSS-395492.8.peg.316	Clustering-based subsystems	
Quinone-dependent oxidoreductase domain	CBSS-395492.8.peg.316	Clustering-based subsystems	
Sulfur carrier protein adenylyltransferase ThiF	Gra	Experimental Subsystems	
Transcriptional regulator, MarR family	Gra	Experimental Subsystems	
MarR family transcriptional regulator	Gra	Experimental Subsystems	
Enolase (EC 4.2.1.11)	Gra	Experimental Subsystems	
Cobalt-zinc-cadmium resistance protein	Gra	Experimental Subsystems	
FIG107367: tRNA-binding protein	Gra	Experimental Subsystems	
Transcriptional regulator YetL, MarR family	Gra	Experimental Subsystems	
TstR	Gra	Experimental Subsystems	
Tst	Gra	Experimental Subsystems	
DNA sulfur modification protein DndD	DNA_phosphorothioation	DNA Metabolism	
DNA sulfur modification protein DndB	DNA_phosphorothioation	DNA Metabolism	
3'-phosphoadenosine 5'-phosphosulfate sulfurtransferase DndC	DNA_phosphorothioation	DNA Metabolism	
DNA sulfur modification protein DndE	DNA_phosphorothioation	DNA Metabolism	
NifS-like cysteine desulfurase DndA	DNA_phosphorothioation	DNA Metabolism	
Spore coat protein A	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein B	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein C	Bsub-Spore-Coat	Dormancy and Sporulation	
Inner spore coat protein D	Bsub-Spore-Coat	Dormancy and Sporulation	
Outer spore coat protein E	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein F	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein G	Bsub-Spore-Coat	Dormancy and Sporulation	
Inner spore coat protein H	Bsub-Spore-Coat	Dormancy and Sporulation	
Polypeptide composition of the spore coat; required for the assembly of CotJC	Bsub-Spore-Coat	Dormancy and Sporulation	
Polypeptide composition of the spore coat protein CotJC	Bsub-Spore-Coat	Dormancy and Sporulation	
Small, acid-soluble spore protein O	Bsub-Spore-Coat	Dormancy and Sporulation	
Small, acid-soluble spore protein P	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein M	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein S	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein T precursor	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein V	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein W	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein X	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein Y	Bsub-Spore-Coat	Dormancy and Sporulation	
Spore coat protein Z	Bsub-Spore-Coat	Dormancy and Sporulation	
Stage IV sporulation protein A	Bsub-Spore-Coat	Dormancy and Sporulation	
Stage VI sporulation protein D	Bsub-Spore-Coat	Dormancy and Sporulation	
Manganese superoxide dismutase (EC 1.15.1.1)	Bsub-Spore-Coat	Dormancy and Sporulation	
Polypeptide composition of the spore coat protein CotJB	Bsub-Spore-Coat	Dormancy and Sporulation	
DinG family ATP-dependent helicase YoaA	DNA_repair,_bacterial_DinG_and_relatives	DNA Metabolism	DNA repair
DinG family ATP-dependent helicase YpvA	DNA_repair,_bacterial_DinG_and_relatives	DNA Metabolism	DNA repair
DinG family ATP-dependent helicase CPE1197	DNA_repair,_bacterial_DinG_and_relatives	DNA Metabolism	DNA repair
ATP-dependent helicase DinG/Rad3	DNA_repair,_bacterial_DinG_and_relatives	DNA Metabolism	DNA repair
Twin-arginine translocation protein TatA	Twin-arginine_translocation_system	Membrane Transport	Protein translocation across cytoplasmic membrane
Twin-arginine translocation protein TatC	Twin-arginine_translocation_system	Membrane Transport	Protein translocation across cytoplasmic membrane
Twin-arginine translocation protein TatB	Twin-arginine_translocation_system	Membrane Transport	Protein translocation across cytoplasmic membrane
Twin-arginine translocation protein TatE	Twin-arginine_translocation_system	Membrane Transport	Protein translocation across cytoplasmic membrane
Deoxyribonuclease TatD	Twin-arginine_translocation_system	Membrane Transport	Protein translocation across cytoplasmic membrane
F420-dependent sulfite reductase	F420-dependent_sulfite_reductase	Sulfur Metabolism	Inorganic sulfur assimilation
Sulfite reductase-related protein	F420-dependent_sulfite_reductase	Sulfur Metabolism	Inorganic sulfur assimilation
Coenzyme F420-dependent oxidoreductase	F420-dependent_sulfite_reductase	Sulfur Metabolism	Inorganic sulfur assimilation
Siderophore synthetase large component, acetyltransferase	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore synthetase small component, acetyltransferase	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore synthetase component, ligase	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore biosynthesis protein, monooxygenase	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
TonB-dependent siderophore receptor	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Hemin transport protein HmuS	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
TonB-dependent hemin , ferrichrome receptor	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76)	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore transport protein	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore biosynthesis non-ribosomal peptide synthetase modules	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
ABC-type Fe3+-siderophore transport system, permease component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
ABC-type Fe3+-siderophore transport system, ATPase component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
ABC-type Fe3+-siderophore transport system, periplasmic iron-binding component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
ABC-type Fe3+-siderophore transport system, permease 2 component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Siderophore related permease	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Ferric reductase (1.6.99.14)	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Hemin ABC transporter, permease protein	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
ABC-type hemin transport system, ATPase component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Periplasmic hemin-binding protein	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Iron-siderophore transport system, transmembran component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Iron-siderophore transport system, permease component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Iron-siderophore transport system, ATP-binding component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Long-chain-fatty-acid--CoA ligase of siderophore biosynthesis	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate outer membrane receptor FhuA	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Iron-siderophore transport system, substrate-binding component	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
TonB-dependent hemin receptor	Siderophore_assembly_kit	Iron acquisition and metabolism	Siderophores
Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-)	CBSS-204773.3.peg.746	Clustering-based subsystems	
ATPase associated with various cellular activities, AAA_5	CBSS-204773.3.peg.746	Clustering-based subsystems	
VWA containing CoxE family protein	CBSS-204773.3.peg.746	Clustering-based subsystems	
Competence protein F homolog, phosphoribosyltransferase domain	Glutaredoxin_3_containing_cluster_2	Clustering-based subsystems	
FIG147869: Carbon-nitrogen hydrolase	Glutaredoxin_3_containing_cluster_2	Clustering-based subsystems	
Glutaredoxin 3 (Grx2)	Glutaredoxin_3_containing_cluster_2	Clustering-based subsystems	
SAM-dependent methyltransferase, BioC-like	Glutaredoxin_3_containing_cluster_2	Clustering-based subsystems	
Glutaredoxin 3	Glutaredoxin_3_containing_cluster_2	Clustering-based subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	Adaptation_to_d-cysteine	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cystine ABC transporter, permease protein	Adaptation_to_d-cysteine	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cystine ABC transporter, ATP-binding protein	Adaptation_to_d-cysteine	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
L-Cystine ABC transporter, periplasmic cystine-binding protein	Adaptation_to_d-cysteine	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Glutamine synthetase type I (EC 6.3.1.2)	Gln_synthetase_and_NAD_synthetase	Experimental Subsystems	Phages, Prophages, Transposable elements
NAD synthetase (EC 6.3.1.5)	Gln_synthetase_and_NAD_synthetase	Experimental Subsystems	Phages, Prophages, Transposable elements
Glutamine amidotransferase chain of NAD synthetase	Gln_synthetase_and_NAD_synthetase	Experimental Subsystems	Phages, Prophages, Transposable elements
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Gln_synthetase_and_NAD_synthetase	Experimental Subsystems	Phages, Prophages, Transposable elements
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Gln_synthetase_and_NAD_synthetase	Experimental Subsystems	Phages, Prophages, Transposable elements
NMN synthetase (EC 6.3.1.-)	Gln_synthetase_and_NAD_synthetase	Experimental Subsystems	Phages, Prophages, Transposable elements
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Gln_synthetase_and_NAD_synthetase	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA topoisomerase, phage-associated	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
DNA ligase, phage-associated	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Thymidine kinase (EC 2.7.1.21)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage capsid vertex protein	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage double-stranded DNA binding protein	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge initiator (T4-like gp7)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Deoxynucleotide monophosphate kinase (EC 2.7.4.13)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge tail fiber connector (T4-like gp9)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage DNA topoisomerase large subunit (EC 5.99.1.3)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC1630	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage ribonuclease H (EC 3.1.26.4)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit and tail pin (T4-like gp11)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage short tail fiber protein	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
3'-phosphatase, 5'-polynucleotide kinase, phage-associated	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
DNA helicase (EC 3.6.1.-), phage-associated	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Glutaredoxin, phage-associated	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC1491	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysis inhibitor	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit and tail pin (T4-like gp10)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage neck whiskers	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage DNA helicase loader	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage endonuclease	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
RNA ligase, phage-associated	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC1559	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage capsid assembly chaperone	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage long tail fiber proximal subunit	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC1542	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate-tail tube initiator (T4-like gp54)	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC1584	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage thioredoxin	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
T4-like phage protein, T4 GC2721	T4-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine aminotransferase (EC 2.6.1.82)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine importer	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine utilization regulator	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putative symporter in putrescine utilization cluster	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putative oxidoreductase in putrescine utilization cluster	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Uncharacterized protein in putrescine utilization cluster	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Monoamine/putrescine oxidase (EC 1.4.3.10)	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Similar to gamma-glutamyl-putrescine oxidase	Putrescine_utilization_pathways	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
SMT0608 replicon stabilization toxin	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
SMT0609 replicon stabilization protein (antitoxin to SMT0608)	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
StbD replicon stabilization protein (antitoxin to StbE)	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
StbE replicon stabilization toxin	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelB protein (antitoxin to RelE)	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelE antibacterial toxin protein	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
TTE0858 replicon stabilization protein (antitoxin to TTE0859)	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
TTE0859 replicon stabilization toxin	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelF inactive antibacterial toxin protein	Toxin-antitoxin_replicon_stabilization_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
D-Lactate dehydrogenase (EC 1.1.2.5)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Glycerol dehydrogenase (EC 1.1.1.6)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
L-lactate dehydrogenase (EC 1.1.2.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
NADH dehydrogenase (EC 1.6.99.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
D-amino acid dehydrogenase large subunit (EC 1.4.99.1)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Methylamine dehydrogenase heavy chain precursor (EC 1.4.99.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Methylamine dehydrogenase light chain precursor (EC 1.4.99.3)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Methanol dehydrogenase large subunit protein (EC 1.1.99.8)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
quinoprotein alcohol dehydrogenase	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
putative Fe-S, FMN containing oxidoreductase	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Sn-glycerol-3-phosphate dehydrogenase (Aerobic) (Aerobic glycerol-3-phosphate dehydrogenase)(EC 1.1.99.5)	Respiratory_dehydrogenases_1	Respiration	Electron donating reactions
Global nitrogen regulatory protein, CRP family of transcriptional regulators	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Ferredoxin--nitrite reductase (EC 1.7.7.1)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Nitrogen regulatory protein P-II	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Glutamine synthetase type I (EC 6.3.1.2)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Ammonium transporter family	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
photosystem II protein D1 (PsbA)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Serine acetyltransferase (EC 2.3.1.30)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
NADH dehydrogenase (EC 1.6.99.3)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Ubiquinone biosynthesis monooxygenase UbiB	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
DNA polymerase I (EC 2.7.7.7)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Nitrogen assimilation transcriptional activator NtcB	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Glutamine synthetase inactivating factor IF7	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Cyanobacteria-specific RpoD-like sigma factor, type-1	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Heterocyst specific ABC transporter ATP-binding protein	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Heterocyst specific ABC transporter permease protein	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Heterocyst specific ABC transporter substrate-binding protein	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Nitrogen-responsive response regulator NrrA	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Heterocyst differentiation protein HetC	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Glutamine synthetase inactivating factor IF17	NtcA_regulon	Experimental Subsystems	Nitrogen fixation and assimilation
Hypothetical protein VC0266 (sugar utilization related?)	VC0266	Carbohydrates	
L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)	CL_IRG1	Experimental Subsystems	
Citrate lyase beta chain (EC 4.1.3.6)	CL_IRG1	Experimental Subsystems	
Probable acyl-CoA dehydrogenase (EC 1.3.99.3)	CL_IRG1	Experimental Subsystems	
Immune-responsive protein 1	CL_IRG1	Experimental Subsystems	
CAIB/BAIF family protein	CL_IRG1	Experimental Subsystems	
HlyD family secretion protein	CBSS-36873.1.peg.6699	Clustering-based subsystems	
RND efflux system, outer membrane lipoprotein, NodT	CBSS-36873.1.peg.6699	Clustering-based subsystems	
FIG093377: FHA domain-containing protein	CBSS-36873.1.peg.6699	Clustering-based subsystems	
Sigma-54 dependent DNA-binding response regulator	CBSS-36873.1.peg.6699	Clustering-based subsystems	
Parvulin-like peptidyl-prolyl isomerase	CBSS-36873.1.peg.6699	Clustering-based subsystems	
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain	CBSS-36873.1.peg.6699	Clustering-based subsystems	
FIG002842: hypothetical protein	CBSS-562.2.peg.633	Membrane Transport	Protein secretion system, Type II
Dephospho-CoA kinase (EC 2.7.1.24)	CBSS-562.2.peg.633	Membrane Transport	Protein secretion system, Type II
Type IV fimbrial assembly protein PilC	CBSS-562.2.peg.633	Membrane Transport	Protein secretion system, Type II
Type IV fimbrial assembly, ATPase PilB	CBSS-562.2.peg.633	Membrane Transport	Protein secretion system, Type II
FIG003276: zinc-binding protein	CBSS-562.2.peg.633	Membrane Transport	Protein secretion system, Type II
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)	CBSS-562.2.peg.633	Membrane Transport	Protein secretion system, Type II
TniB NTP-binding protein	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
TniA putative transposase	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Mll9366 protein	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
ComM-related protein	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
MG(2+) CHELATASE FAMILY PROTEIN	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Segregation and condensation protein B	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Resolvase/Integrase TinR protein	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
TniQ	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
FIGfam050825	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
ISPsy4, transposition helper protein	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Plasmid replication protein RepA	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Integrase/recombinase clustered with segregation and condensation protein B	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
protein of unknown function DUF1612	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
protein of unknown function DUF1403	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Transposase OrfAB, subunit B	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
FIGfam110555	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
ISPsy4, transposase	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
Predicted nucleotidyltransferases	CBSS-203122.12.peg.188	Phages, Prophages, Transposable elements, Plasmids	Transposable elements
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	ZZ_gjo_scratch	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	ZZ_gjo_scratch	Experimental Subsystems	
Phosphate:acyl-ACP acyltransferase PlsX	ZZ_gjo_scratch	Experimental Subsystems	
IMP cyclohydrolase (EC 3.5.4.10)	ZZ_gjo_scratch	Experimental Subsystems	
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	ZZ_gjo_scratch	Experimental Subsystems	
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY	ZZ_gjo_scratch	Experimental Subsystems	
Heat-inducible transcription repressor HrcA	ZZ_gjo_scratch	Experimental Subsystems	
Plastocyanin	ZZ_gjo_scratch	Experimental Subsystems	
Methionyl-tRNA formyltransferase-like protein 2	ZZ_gjo_scratch	Experimental Subsystems	
Ava_C0101 and related proteins	ZZ_gjo_scratch	Experimental Subsystems	
Formyl transferase domain protein	ZZ_gjo_scratch	Experimental Subsystems	
Energy-conserving [NiFe] hydrogenase (ferredoxin) beta subunit	ZZ_gjo_scratch	Experimental Subsystems	
Peptide deformylase related protein	ZZ_gjo_scratch	Experimental Subsystems	
All3116 protein	CBSS-84588.1.peg.1247	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Cysteine desulfurase (EC 2.8.1.7)	CBSS-84588.1.peg.1247	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	CBSS-84588.1.peg.1247	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Diaminopimelate epimerase (EC 5.1.1.7)	CBSS-84588.1.peg.1247	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Tlr0729 protein	CBSS-84588.1.peg.1247	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	CBSS-84588.1.peg.1247	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Aminotransferase ScrA	CBSS-84588.1.peg.1247	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Sporulation kinase A (EC 2.7.13.3)	Sporulation_gene_orphans	Dormancy and Sporulation	
KapD, inhibitor of KinA pathway to sporulation	Sporulation_gene_orphans	Dormancy and Sporulation	
KapB, lipoprotein required for KinB pathway to sporulation	Sporulation_gene_orphans	Dormancy and Sporulation	
Sporulation kinase C (EC 2.7.13.3)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage 0 sporulation two-component response regulator (Spo0A)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage IV sporulation protein B	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage II sporulation protein M (SpoIIM)	Sporulation_gene_orphans	Dormancy and Sporulation	
Sporulation initiation phosphotransferase B (Spo0B)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage IV sporulation protein FA (SpoIVFA)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage IV sporulation pro-sigma-K processing enzyme (SpoIVFB)	Sporulation_gene_orphans	Dormancy and Sporulation	
Sporulation initiation phosphotransferase (Spo0F)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage II sporulation protein B	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage II sporulation protein D (SpoIID)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage II sporulation protein related to metaloproteases (SpoIIQ)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein D	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE)	Sporulation_gene_orphans	Dormancy and Sporulation	
Sporulation sigma-E factor processing peptidase (SpoIIGA)	Sporulation_gene_orphans	Dormancy and Sporulation	
RNA polymerase sporulation specific sigma factor SigE	Sporulation_gene_orphans	Dormancy and Sporulation	
RNA polymerase sporulation specific sigma factor SigG	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage II sporulation protein P	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AA	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AB	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AC	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AD	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AE	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AF	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AG	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage III sporulation protein AH	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage IV sporulation protein A	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein AA (SpoVAA)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein AB (SpoVAB)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein AC (SpoVAC)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein AD (SpoVAD)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein AE (SpoVAE)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein AF (SpoVAF)	Sporulation_gene_orphans	Dormancy and Sporulation	
RNA polymerase sporulation specific sigma factor SigF	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein B	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein T, AbrB family transcriptional regulator (SpoVT)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein D (Sporulation-specific penicillin-binding protein)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein E	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein whose disruption leads to the production of immature spores (SpoVK)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein required for normal spore cortex and coat synthesis (SpoVM)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein involved in spore cortex synthesis (SpoVR)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)	Sporulation_gene_orphans	Dormancy and Sporulation	
Stage VI sporulation protein D	Sporulation_gene_orphans	Dormancy and Sporulation	
RNA polymerase sporulation specific sigma factor SigK	Sporulation_gene_orphans	Dormancy and Sporulation	
Sporulation kinase B (EC 2.7.13.3)	Sporulation_gene_orphans	Dormancy and Sporulation	
Acyl-CoA thioesterase II (EC 3.1.2.-)	Acyl-CoA_thioesterase_II	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
TesB-like acyl-CoA thioesterase 3	Acyl-CoA_thioesterase_II	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
TesB-like acyl-CoA thioesterase 1	Acyl-CoA_thioesterase_II	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
TesB-like acyl-CoA thioesterase 2	Acyl-CoA_thioesterase_II	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
TesB-like acyl-CoA thioesterase 5	Acyl-CoA_thioesterase_II	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
TesB-like acyl-CoA thioesterase 4	Acyl-CoA_thioesterase_II	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Ku domain protein	Nonhomologous_End-Joining_in_Bacteria	DNA Metabolism	DNA repair
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD	Nonhomologous_End-Joining_in_Bacteria	DNA Metabolism	DNA repair
ATP-dependent DNA ligase (EC 6.5.1.1) LigC	Nonhomologous_End-Joining_in_Bacteria	DNA Metabolism	DNA repair
Nucleoside diphosphate kinase (EC 2.7.4.6)	CBSS-498211.3.peg.1415	Clustering-based subsystems	
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	CBSS-498211.3.peg.1415	Clustering-based subsystems	
Type IV pilus biogenesis protein PilF	CBSS-498211.3.peg.1415	Clustering-based subsystems	
FIG021952: putative membrane protein	CBSS-498211.3.peg.1415	Clustering-based subsystems	
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	CBSS-498211.3.peg.1415	Clustering-based subsystems	
Histidyl-tRNA synthetase (EC 6.1.1.21)	CBSS-498211.3.peg.1415	Clustering-based subsystems	
FIG001046: putative membrane protein	CBSS-498211.3.peg.1415	Clustering-based subsystems	
Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)	CBSS-498211.3.peg.1415	Clustering-based subsystems	
GTP-binding protein EngA	CBSS-498211.3.peg.1415	Clustering-based subsystems	
Protein GerPA, required for proper assembly of spore coat, mutations lead to super-dormant spore	Spore_germination	Dormancy and Sporulation	
Protein GerPB, required for proper assembly of spore coat, mutations lead to super-dormant spore	Spore_germination	Dormancy and Sporulation	
Protein GerPC, required for proper assembly of spore coat, mutations lead to super-dormant spore	Spore_germination	Dormancy and Sporulation	
Protein GerPD, required for proper assembly of spore coat, mutations lead to super-dormant spore	Spore_germination	Dormancy and Sporulation	
Protein GerPE, required for proper assembly of spore coat, mutations lead to super-dormant spore	Spore_germination	Dormancy and Sporulation	
Protein GerPF, required for proper assembly of spore coat, mutations lead to super-dormant spore	Spore_germination	Dormancy and Sporulation	
Similar to proteins GerPF and GerPA	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerAA, germination response to L-alanine and related amino acids (earliest stage)	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerAB, germination response to L-alanine and related amino acids (earliest stage)	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerAC, germination response to L-alanine and related amino acids (earliest stage)	Spore_germination	Dormancy and Sporulation	
Uncharacterized spore germination protein YndD	Spore_germination	Dormancy and Sporulation	
Uncharacterized spore germination protein YndE	Spore_germination	Dormancy and Sporulation	
Uncharacterized spore germination protein YndF	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerKA	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerKB	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerKC	Spore_germination	Dormancy and Sporulation	
Spore cortex-lytic enzyme, lytic transglycosylase SleB	Spore_germination	Dormancy and Sporulation	
Spore germination protein YpeB	Spore_germination	Dormancy and Sporulation	
Spore cortex-lytic enzyme CwlJ	Spore_germination	Dormancy and Sporulation	
Spore cortex-lytic enzyme, N-acetylglucosaminidase SleL (EC 3.2.1.-)	Spore_germination	Dormancy and Sporulation	
Spore protein YdhD, not involved in spore germination	Spore_germination	Dormancy and Sporulation	
Uncharacterized protein YkvT, NOT involved in spore germination	Spore_germination	Dormancy and Sporulation	
Germination-specific N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), cell wall hydrolase CwlD	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerD	Spore_germination	Dormancy and Sporulation	
Spo0E-like putative sporulation regulatory protein in grePA-PF operon	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerLA	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerLB	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerLC	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerN (inosine-dependent germination), Na+/H+ antiporter	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerXA (on pXO1)	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerXB (on pXO1)	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerXC (on pXO1)	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerSA	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerSB	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerSC	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerYA	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerYB	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerYC	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerHA/GerIA	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerHB/GerIB	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerHC/GerIC	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerQA	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerQB	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerQC	Spore_germination	Dormancy and Sporulation	
Putative peptidoglycan hydrolase YvbX, NOT involved in spore germination	Spore_germination	Dormancy and Sporulation	
Putative spore germination protein, GerB family	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerBA, germination response to combination of glucose, fructose, L-asparagine, and K+ (earliest stage)	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerBB, germination response to combination of glucose, fructose, L-asparagine, and K+ (earliest stage)	Spore_germination	Dormancy and Sporulation	
Spore germination protein GerBC, germination response to combination of glucose, fructose, L-asparagine, and K+ (earliest stage)	Spore_germination	Dormancy and Sporulation	
Glutamine synthetase type I (EC 6.3.1.2)	Glutamine_synthetases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Glutamine_synthetases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
glutamine synthetase family protein	Glutamine_synthetases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2)	Glutamine_synthetases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Glutamine_synthetases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase (EC 6.3.1.2), putative	Glutamine_synthetases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Glutamine_synthetases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
FIG137864: putative endonuclease containing a URI domain	CBSS-214092.1.peg.3450	Clustering-based subsystems	
FIG002208: Acetyltransferase (EC 2.3.1.-)	CBSS-214092.1.peg.3450	Clustering-based subsystems	
FIG139552: Putative protease	CBSS-214092.1.peg.3450	Clustering-based subsystems	
FIG138517: Putative lipid carrier protein	CBSS-214092.1.peg.3450	Clustering-based subsystems	
FIG139928: Putative protease	CBSS-214092.1.peg.3450	Clustering-based subsystems	
[FeFe]-hydrogenase maturation GTPase HydF	FeFe_hydrogenase_maturation	Protein Metabolism	Protein processing and modification
[FeFe]-hydrogenase maturation protein HydE	FeFe_hydrogenase_maturation	Protein Metabolism	Protein processing and modification
[FeFe]-hydrogenase maturation protein HydG	FeFe_hydrogenase_maturation	Protein Metabolism	Protein processing and modification
Putative N-carbamyl-L-cysteine amidohydrolase	L-2-amino-thiazoline-4-carboxylic_acid-Lcysteine_conversion	Amino Acids and Derivatives	
Beta-ureidopropionase (EC 3.5.1.6)	L-2-amino-thiazoline-4-carboxylic_acid-Lcysteine_conversion	Amino Acids and Derivatives	
L-2-amino-thiazoline-4-carboxylic acid hydrolase (EC 3.5.2.-)	L-2-amino-thiazoline-4-carboxylic_acid-Lcysteine_conversion	Amino Acids and Derivatives	
Phage major tail protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage minor tail protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail length tape-measure protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage major tail shaft protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail length tape-measure protein 1	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail tube protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail completion protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly chaperone	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly protein I	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail/DNA circulation protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tape measure protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail assembly	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage major tail sheath protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail protein involved in host-recognition	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage major tail tube protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail tube monomer	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail sheath monomer	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail connector protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail sheath protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail shaft protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail spike protein	Phage_tail_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Folate_transporters	Membrane Transport	
Folate transporter 3	Folate_transporters	Membrane Transport	
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	Folate_transporters	Membrane Transport	
Transmembrane component of general energizing module of ECF transporters	Folate_transporters	Membrane Transport	
ATPase component of general energizing module of ECF transporters	Folate_transporters	Membrane Transport	
Dihydrofolate synthase (EC 6.3.2.12) / Folylpolyglutamate synthase (EC 6.3.2.17)	Folate_transporters	Membrane Transport	
Aminobenzoyl-glutamate transport protein	Folate_transporters	Membrane Transport	
Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A	Folate_transporters	Membrane Transport	
Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit B	Folate_transporters	Membrane Transport	
Regulatory protein (induces abgABT, used to catabolize p-aminobenzoyl-glutamate)	Folate_transporters	Membrane Transport	
Substrate-specific component FolT of folate ECF transporter	Folate_transporters	Membrane Transport	
FIG011895: hypothetical protein	CBSS-158878.1.peg.567	Clustering-based subsystems	
FIG013761: LmbE family protein	CBSS-158878.1.peg.567	Clustering-based subsystems	
Heavy-Metal transporting ATPase	Family_06_HM_P-type_ATPase		
Energy conserving hydrogenase Ehb protein A	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein B	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein C	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein D	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb transmembrane protein E	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb anchor subunit F	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein G	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein H	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein I	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein J	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb polyferredoxin (protein K)	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb ferredoxin-containing protein L	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb small subunit (protein M)	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb large subunit (protein N)	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb integral membrane protein O	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein P	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein Q	Energy_conserving_hydrogenase_b,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
DotA protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
DotB protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
DotC protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
DotD	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmS protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmT protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmV protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmW protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmQ protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmB (DotO) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmK (DotH) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmJ (DotN) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmC (DotE) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmE (DotG) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmD (DotP) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmG protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmX protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmO (DotL) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmP (DotM) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmL (DotI) protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmR protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
IcmF protein	Dot-Icm_type_IV_secretion_system	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)	Dimethylarginine_metabolism	Stress Response	
Ornithine aminotransferase (EC 2.6.1.13)	Dimethylarginine_metabolism	Stress Response	
protein arginine methyltransferase type 2 (SDMA formation)	Dimethylarginine_metabolism	Stress Response	
Protein arginine N-methyltransferase 1 (EC 2.1.1.-)	Dimethylarginine_metabolism	Stress Response	
Putative N-acetylgalactosaminyl-diphosphoundecaprenol glucuronosyltransferase	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
UDP-glucose dehydrogenase (EC 1.1.1.22)	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Putative teichuronic acid biosynthesis glycosyl transferase TuaC	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Putative teichuronic acid biosynthesis glycosyl transferase TuaH	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichuronic acid biosynthesis protein TuaB	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichuronic acid biosynthesis protein TuaE, putative secreted polysaccharide polymerase	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichuronic acid biosynthesis protein TuaF	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)	Predicted_carbohydrate_hydrolases	Carbohydrates	Glycoside hydrolases
COG1649 predicted glycoside hydrolase	Predicted_carbohydrate_hydrolases	Carbohydrates	Glycoside hydrolases
Polysaccharide deacetylase	Predicted_carbohydrate_hydrolases	Carbohydrates	Glycoside hydrolases
COG2152 predicted glycoside hydrolase	Predicted_carbohydrate_hydrolases	Carbohydrates	Glycoside hydrolases
COG1306 predicted glycoside hydrolase	Predicted_carbohydrate_hydrolases	Carbohydrates	Glycoside hydrolases
Carbohydrate Esterase Family 4	Predicted_carbohydrate_hydrolases	Carbohydrates	Glycoside hydrolases
Polysaccharide intercellular adhesin (PIA) biosynthesis deacetylase IcaB (EC 3.-.-.-)	Predicted_carbohydrate_hydrolases	Carbohydrates	Glycoside hydrolases
Photosystem P840 reaction center large subunit PscA	Photosystem_I-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Photosystem P840 reaction center iron-sulfur subunit PscB	Photosystem_I-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Photosystem P840 reaction center subunit PscC, cytochrome c-551	Photosystem_I-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
Photosystem P840 reaction center subunit PscD	Photosystem_I-type_photosynthetic_reaction_center	Photosynthesis	Electron transport and photophosphorylation
(3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-)	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60)	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[ACP] reductase (EC 1.1.1.100)	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[ACP] synthase	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl carrier protein (ACP1)	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl carrier protein (ACP2)	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG017861: hypothetical protein	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG021862: membrane protein, exporter	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG027190: Putative transmembrane protein	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG085779: Lipoprotein	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41)	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG143263: Glycosyl transferase	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Lysophospholipid acyltransferase	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG035331: hypothetical protein	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG022199: FAD-binding protein	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG025233: SAM-dependent methyltransferases	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Putative histidine ammonia-lyase protein	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG064705: cation/hydrogen antiporter	Phospholipid_and_Fatty_acid_biosynthesis_related_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Mn-dependent transcriptional regulator MntR	Transport_of_Manganese	Membrane Transport	
Manganese transport protein MntH	Transport_of_Manganese	Membrane Transport	
Manganese ABC transporter, periplasmic-binding protein SitA	Transport_of_Manganese	Membrane Transport	
Manganese ABC transporter, ATP-binding protein SitB	Transport_of_Manganese	Membrane Transport	
Manganese ABC transporter, inner membrane permease protein SitD	Transport_of_Manganese	Membrane Transport	
Manganese ABC transporter, inner membrane permease protein SitC	Transport_of_Manganese	Membrane Transport	
Predicted manganese transporter, 11 TMS	Transport_of_Manganese	Membrane Transport	
Manganese uptake regulation protein MUR	Transport_of_Manganese	Membrane Transport	
Flagellin	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FlhA	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FlhB	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellum-specific ATP synthase FliI	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FliR	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body rod modification protein FlgD	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar L-ring protein FlgH	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor rotation protein MotA	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor rotation protein MotB	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor switch protein FliM	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar motor switch protein FliN	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar synthesis regulator FleN	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar biosynthesis protein FlhF	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Signal transduction histidine kinase CheA (EC 2.7.3.-)	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Chemotaxis protein CheV (EC 2.7.3.-)	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
RNA polymerase sigma factor for flagellar operon	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
RNA polymerase sigma-54 factor RpoN	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Motility integral membrane protein	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Predicted signal transduction protein	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Signal transduction protein CetA, mediates an energy taxis response	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Signal transduction protein CetB, mediates an energy taxis response	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Rrf2 family transcriptional regulator	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Putative lipoprotein required for motility	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Motility accessory factor	Flagellar_motility	Motility and Chemotaxis	Flagellar motility in Prokaryota
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Thiamin biosynthesis lipoprotein ApbE	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Probable exported or periplasmic protein in ApbE locus	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Electron transport complex protein RnfA	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Electron transport complex protein RnfB	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Electron transport complex protein RnfC	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Electron transport complex protein RnfD	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Electron transport complex protein RnfE	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Electron transport complex protein RnfG	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
probable exported protein YPO3233	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
Hypothetical protein in ApbE locus	Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	Respiration	Electron donating reactions
FIG131328: Predicted ATP-dependent endonuclease of the OLD family	CBSS-1496.1.peg.2937	Clustering-based subsystems	
FIG116849: hypothetical protein	CBSS-1496.1.peg.2937	Clustering-based subsystems	
Phage holin, class II	T7-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Phage lysin, N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	T7-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Host RNA polymerase inhibitor, T7-like gp2	T7-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
DNA packaging protein A, T7-like gp18	T7-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Host protein H-NS-interacting protein, T7-like gp5.5-5.7	T7-like_non-cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
RecD-like DNA helicase YrrC	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
Exodeoxyribonuclease V beta chain (EC 3.1.11.5)	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
ATP-dependent DNA helicase SCO5183	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
ATP-dependent DNA helicase SCO5184	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
Protease III precursor (EC 3.4.24.55)	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
RecD-like DNA helicase Atu2026	DNA_repair,_bacterial_RecBCD_pathway	DNA Metabolism	DNA repair
P-hydroxybenzaldehyde dehydrogenase	Cresol_degradation	Metabolism of Aromatic Compounds	
4-cresol dehydrogenase [hydroxylating] cytochrome c subunit precursor	Cresol_degradation	Metabolism of Aromatic Compounds	
4-cresol dehydrogenase [hydroxylating] flavoprotein subunit (EC 1.17.99.1)	Cresol_degradation	Metabolism of Aromatic Compounds	
benzyl alcohol dehydrogenase	Cresol_degradation	Metabolism of Aromatic Compounds	
Protein involved in meta-pathway of phenol degradation	Cresol_degradation	Metabolism of Aromatic Compounds	
Ferrous iron transport permease EfeU	Ferrous_iron_transporter_EfeUOB,_low-pH-induced	Iron acquisition and metabolism	
Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain	Ferrous_iron_transporter_EfeUOB,_low-pH-induced	Iron acquisition and metabolism	
Ferrous iron transport peroxidase EfeB	Ferrous_iron_transporter_EfeUOB,_low-pH-induced	Iron acquisition and metabolism	
Ferrous iron transport permease EfeU, N-terminal extended	Ferrous_iron_transporter_EfeUOB,_low-pH-induced	Iron acquisition and metabolism	
sulfur oxidation protein SoxA	Sulfur_oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxB	Sulfur_oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxX	Sulfur_oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxY	Sulfur_oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxZ	Sulfur_oxidation	Sulfur Metabolism	
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor (EC 1.8.2.-)	Sulfur_oxidation	Sulfur Metabolism	
Thiol:disulfide interchange protein, thioredoxin family	Sulfur_oxidation	Sulfur Metabolism	
Sulfite dehydrogenase cytochrome subunit SoxD	Sulfur_oxidation	Sulfur Metabolism	
Lipocalin-related protein and Bos/Can/Equ allergen	Sulfur_oxidation	Sulfur Metabolism	
Sulfur oxidation molybdopterin C protein	Sulfur_oxidation	Sulfur Metabolism	
transcriptional regulator SoxR	Sulfur_oxidation	Sulfur Metabolism	
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	Sulfur_oxidation	Sulfur Metabolism	
Regulatory protein SoxS	Sulfur_oxidation	Sulfur Metabolism	
thioredoxin SoxW	Sulfur_oxidation	Sulfur Metabolism	
Blr3520 protein homolog, hypothetical protein	Sulfur_oxidation	Sulfur Metabolism	
cytochrome c subunit of flavocytochrome c sulfide dehydrogenase	Sulfur_oxidation	Sulfur Metabolism	
SoxH protein, homolog	Sulfur_oxidation	Sulfur Metabolism	
Sulfite oxidase	Sulfur_oxidation	Sulfur Metabolism	
Mercuric ion reductase (EC 1.16.1.1)	Mercuric_reductase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase	Mercuric_reductase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Enterotoxin, A subunit (NAD(+)--diphthamide ADP- ribosyltransferase) (EC 2.4.2.36)	Cholera_toxin	Virulence, Disease and Defense	Toxins and superantigens
Enterotoxin, B subunit	Cholera_toxin	Virulence, Disease and Defense	Toxins and superantigens
Accessory cholera enterotoxin	Cholera_toxin	Virulence, Disease and Defense	Toxins and superantigens
Zona occludens toxin	Cholera_toxin	Virulence, Disease and Defense	Toxins and superantigens
TCP pilus virulence regulatory protein ToxT, transcription activator	Cholera_toxin	Virulence, Disease and Defense	Toxins and superantigens
Transcriptional activator ToxR	Cholera_toxin	Virulence, Disease and Defense	Toxins and superantigens
Transmembrane regulatory protein ToxS	Cholera_toxin	Virulence, Disease and Defense	Toxins and superantigens
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Nodulation protein nolO (EC 2.1.3.-)	Nodulation_in_Rhizobia	Experimental Subsystems	
Nodulation ABC transporter, NodI	Nodulation_in_Rhizobia	Experimental Subsystems	
Nodulation protein J	Nodulation_in_Rhizobia	Experimental Subsystems	
N-methyl transferase nodS	Nodulation_in_Rhizobia	Experimental Subsystems	
Nodulation protein C	Nodulation_in_Rhizobia	Experimental Subsystems	
Nodulation protein B	Nodulation_in_Rhizobia	Experimental Subsystems	
Nodulation protein A	Nodulation_in_Rhizobia	Experimental Subsystems	
Nodulation protein D (transcriptional regulator, LysR family)	Nodulation_in_Rhizobia	Experimental Subsystems	
Nodulation protein nolL	Nodulation_in_Rhizobia	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	Aconitase	Experimental Subsystems	
Immune-responsive protein 1	Aconitase	Experimental Subsystems	
Acetylornithine aminotransferase (EC 2.6.1.11)	A_hypothetical_that_clusters_with_arginine_and_ornithine_degradation	Clustering-based subsystems	
Arginine N-succinyltransferase (EC 2.3.1.109)	A_hypothetical_that_clusters_with_arginine_and_ornithine_degradation	Clustering-based subsystems	
FIG008480: hypothetical protein	A_hypothetical_that_clusters_with_arginine_and_ornithine_degradation	Clustering-based subsystems	
N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	A_hypothetical_that_clusters_with_arginine_and_ornithine_degradation	Clustering-based subsystems	
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)	A_hypothetical_that_clusters_with_arginine_and_ornithine_degradation	Clustering-based subsystems	
Succinylornithine transaminase (EC 2.6.1.81)	A_hypothetical_that_clusters_with_arginine_and_ornithine_degradation	Clustering-based subsystems	
Chaperone protein DnaJ	Protein_chaperones	Protein Metabolism	Protein folding
Chaperone protein DnaK	Protein_chaperones	Protein Metabolism	Protein folding
Heat shock protein GrpE	Protein_chaperones	Protein Metabolism	Protein folding
Chaperone protein HtpG	Protein_chaperones	Protein Metabolism	Protein folding
ClpB protein	Protein_chaperones	Protein Metabolism	Protein folding
Chaperone protein HscA	Protein_chaperones	Protein Metabolism	Protein folding
Chaperone protein HscB	Protein_chaperones	Protein Metabolism	Protein folding
DnaJ-class molecular chaperone CbpA	Protein_chaperones	Protein Metabolism	Protein folding
HspR, transcriptional repressor of DnaK operon	Protein_chaperones	Protein Metabolism	Protein folding
Chaperone-modulator protein CbpM	Protein_chaperones	Protein Metabolism	Protein folding
Choline-glycine betaine transporter	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Choline monooxygenase, alpha subunit (EC 1.14.15.7)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Putative dioxygenase, alpha subunit (EC 1.-.-.-)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Putative dioxygenase, beta subunit (EC 1.-.-.-)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Choline monooxygenase, beta subunit (EC 1.14.15.7)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
D-malic enzyme (EC 1.1.1.83)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Tartrate dehydrogenase (EC 1.1.1.93)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Tartrate decarboxylase (EC 4.1.1.73)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	CBSS-344610.3.peg.2335	Clustering-based subsystems	Choline bitartrate degradation, putative
Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Aspartate/ornithine carbamoyltransferase family protein protein YgeW	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Uncharacterized sigma-54-dependent transcriptional regulator YgeV	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Putative deacetylase YgeY	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Carbamate kinase-like protein YqeA	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Uncharacterized protein YqeB	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Uncharacterized protein YqeC	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Hypothetical hydrolase YgeZ (EC 3.-.-.-)	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Uncharacterized lipoprotein YgeR precursor	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
CTP:molybdopterin cytidylyltransferase	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Uncharacterized protein YgeP	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Uncharacterized protein YgfM	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Uncharacterized protein YgfQ	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Putative purine permease YgfO	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
SsnA protein	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Predicted oxidoreductase, Fe-S subunit	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Possible hypoxanthine oxidase XdhD (EC 1.-.-.-)	Putative_diaminopropionate_ammonia-lyase_cluster	Clustering-based subsystems	Clustering-based subsystems
Outer membrane fibronectin-binding protein	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Surface-exposed lipoprotein JlpA	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Major cell-binding factor precursor PebA	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Amino-acid ABC transporter ATP-binding protein PebC	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Putative ABC-type amino-acid transporter permease protein	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Putative fibronectin domain-containing lipoprotein	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Fibronectin/fibrinogen-binding protein	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Filamentous haemagglutinin domain protein	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Flagellin C	Adhesion_of_Campylobacter	Virulence, Disease and Defense	Adhesion
Prevent host death protein, Phd antitoxin	Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Death on curing protein, Doc toxin	Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death antitoxin MazE like	Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death toxin MazF like	Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death toxin YdcE	Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Programmed cell death antitoxin YdcD	Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Major facilitator superfamily (MFS) transporter	CBSS-292415.3.peg.2341	Clustering-based subsystems	Clustering-based subsystems
Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	CBSS-292415.3.peg.2341	Clustering-based subsystems	Clustering-based subsystems
Rhodanese-related sulfurtransferase	CBSS-292415.3.peg.2341	Clustering-based subsystems	Clustering-based subsystems
D-serine dehydratase transcriptional activator	CBSS-292415.3.peg.2341	Clustering-based subsystems	Clustering-based subsystems
Integron integrase IntI4	Integrons	Phages, Prophages, Transposable elements, Plasmids	
Integron integrase IntI1	Integrons	Phages, Prophages, Transposable elements, Plasmids	
Integron integrase IntIPac	Integrons	Phages, Prophages, Transposable elements, Plasmids	
Integron integrase	Integrons	Phages, Prophages, Transposable elements, Plasmids	
Integron integrase IntI2	Integrons	Phages, Prophages, Transposable elements, Plasmids	
Small acid-soluble spore protein, alpha/beta family, SASP_6	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, beta-type SASP	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, gamma-type SASP	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Endopeptidase spore protease Gpr (EC 3.4.24.78)	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, alpha/beta family, SASP_1	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, alpha/beta family, SASP_2	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, alpha/beta family, SASP_3	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, alpha/beta family, SASP_4	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, alpha/beta family, SASP_5	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Small acid-soluble spore protein, alpha-type SASP	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	Spore DNA protection
Carbamate kinase (EC 2.7.2.2)	MLST	Virulence, Disease and Defense	Detection
Shikimate 5-dehydrogenase (EC 1.1.1.25)	MLST	Virulence, Disease and Defense	Detection
Glycerol kinase (EC 2.7.1.30)	MLST	Virulence, Disease and Defense	Detection
Guanylate kinase (EC 2.7.4.8)	MLST	Virulence, Disease and Defense	Detection
Phosphate acetyltransferase (EC 2.3.1.8)	MLST	Virulence, Disease and Defense	Detection
Triosephosphate isomerase (EC 5.3.1.1)	MLST	Virulence, Disease and Defense	Detection
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	MLST	Virulence, Disease and Defense	Detection
Phage major capsid protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage head-to-tail joining protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage capsid scaffolding protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage capsid protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage capsid and scaffold	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Capsid scaffolding protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage minor capsid protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Major capsid protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage capsid vertex	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage capsid vertex assembly chaperone	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage head completion protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Prohead core scaffold protein and protease	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage prohead core protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage capsid assembly	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Phage capsid assembly protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Minor capsid protein	Phage_capsid_proteins	Phages, Prophages, Transposable elements	Bacteriophage structural proteins
Inositol-1-phosphate synthase (EC 5.5.1.4)	Di-Inositol-Phosphate_biosynthesis	Carbohydrates	Sugar alcohols
Inositol-1-monophosphatase (EC 3.1.3.25)	Di-Inositol-Phosphate_biosynthesis	Carbohydrates	Sugar alcohols
CTP:Inositol-1-phosphate cytidylyltransferase (2.7.7.-)	Di-Inositol-Phosphate_biosynthesis	Carbohydrates	Sugar alcohols
Phospho-di-inositol-1-phosphate synthase (EC 2.7.8.-)	Di-Inositol-Phosphate_biosynthesis	Carbohydrates	Sugar alcohols
Na+,K+ P-type ATPase	Family_01_Na+,K+_P-type_ATPase	Clustering-based subsystems	
Trk system potassium uptake protein TrkA	Family_01_Na+,K+_P-type_ATPase	Clustering-based subsystems	
Universal stress protein UspA and related nucleotide-binding proteins	Family_01_Na+,K+_P-type_ATPase	Clustering-based subsystems	
Fibronectin/fibrinogen-binding protein	Family_01_Na+,K+_P-type_ATPase	Clustering-based subsystems	
diguanylate cyclase (GGDEF domain)	Family_01_Na+,K+_P-type_ATPase	Clustering-based subsystems	
DERPC	CBSS-9606.3.peg.12467		
Hyaluronan synthase 3 (EC 2.4.1.212)	CBSS-9606.3.peg.12467		
Beta-2-syntrophin	CBSS-9606.3.peg.12467		
basic beta 2 syntrophin isoform b	CBSS-9606.3.peg.12467		
hypothetical protein	CBSS-9606.3.peg.12467		
Hyaluronan synthase 2 (EC 2.4.1.212)	CBSS-9606.3.peg.12467		
LysR-type transcriptional regulator for nopaline catabolism NocR	Agrobacterium_opine_transport	Membrane Transport	
Nopaline transporter ATP-binding protein NocP	Agrobacterium_opine_transport	Membrane Transport	
Nopaline transporter periplasmic substrate-binding protein NocT	Agrobacterium_opine_transport	Membrane Transport	
Nopaline transporter permease protein NocM	Agrobacterium_opine_transport	Membrane Transport	
Nopaline transporter permease protein NocQ	Agrobacterium_opine_transport	Membrane Transport	
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron binding protein SufA for iron-sulfur cluster assembly	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufB	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster assembly ATPase protein SufC	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufD	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Sulfur acceptor protein SufE for iron-sulfur cluster assembly	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron binding protein IscA for iron-sulfur cluster assembly	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Chaperone protein HscA	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Chaperone protein HscB	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Ferredoxin, 2Fe-2S	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster regulator IscR	Iron-sulfur_cluster_assembly	Experimental Subsystems	
probable iron binding protein from the HesB_IscA_SufA family	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE	Iron-sulfur_cluster_assembly	Experimental Subsystems	
NfuA Fe-S protein maturation	Iron-sulfur_cluster_assembly	Experimental Subsystems	
UPF0269 protein yggX	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Thiamin biosynthesis lipoprotein ApbE	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Nitric oxide-dependent regulator DnrN or NorA	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Ferritin-like protein 2	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Believed to be involved in assembly of Fe-S clusters	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2	Iron-sulfur_cluster_assembly	Experimental Subsystems	
PaaD-like protein involved in Fe-S cluster assembly	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	Iron-sulfur_cluster_assembly	Experimental Subsystems	
DUF1794	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster regulator SufR	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein NifU	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU/NifU-like	Iron-sulfur_cluster_assembly	Experimental Subsystems	
Iron-sulfur cluster assembly/repair protein ApbC	Iron-sulfur_cluster_assembly	Experimental Subsystems	
RNA polymerase sigma factor RpoD	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma-54 factor RpoN	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor RpoS	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor for flagellar operon	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor SigB	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sporulation specific sigma factor SigE	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sporulation specific sigma factor SigF	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sporulation specific sigma factor SigG	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sporulation specific sigma factor SigH	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase heat shock sigma factor SigI	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sporulation specific sigma factor SigK	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor SigZ	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor SigW	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor SigV	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor RpoH	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor RpoE	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
Sigma factor RpoE negative regulatory protein RseB precursor	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
Serine protease precursor MucD/AlgY associated with sigma factor RpoE	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor RpoH-related protein RpoH2	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor RpoH-related protein RpoH3	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma-70 factor	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor RpoH-related protein	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
Sigma factor RpoE negative regulatory protein RseA	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
Sigma factor RpoE regulatory protein RseC	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase principal sigma factor HrdA	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase principal sigma factor HrdD	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
RNA polymerase principal sigma factor HrdC	Transcription_initiation,_bacterial_sigma_factors	RNA Metabolism	Transcription
Protein of unknown function DUF541	CBSS-316407.3.peg.2816	Clustering-based subsystems	
Protein involved in stability of MscS mechanosensitive channel	CBSS-316407.3.peg.2816	Clustering-based subsystems	
Arginine exporter protein ArgO	CBSS-316407.3.peg.2816	Clustering-based subsystems	
Lysine efflux permease	CBSS-316407.3.peg.2816	Clustering-based subsystems	
FIG006045: Sigma factor, ECF subfamily	Iron_siderophore_sensor_&_receptor_system	Iron acquisition and metabolism	Siderophores
Iron siderophore sensor protein	Iron_siderophore_sensor_&_receptor_system	Iron acquisition and metabolism	Siderophores
Iron siderophore receptor protein	Iron_siderophore_sensor_&_receptor_system	Iron acquisition and metabolism	Siderophores
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Glutamate_dehydrogenases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form	Glutamate_dehydrogenases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2)	Glutamate_dehydrogenases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2), eukaryotic type	Glutamate_dehydrogenases	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Ribokinase (EC 2.7.1.15)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose operon repressor	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17)	D-ribose_utilization	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein	D-ribose_utilization	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, permease 1 component	D-ribose_utilization	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, permease 2 component	D-ribose_utilization	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, ATP-binding component	D-ribose_utilization	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, substrate-binding component	D-ribose_utilization	Carbohydrates	Monosaccharides
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	D-ribose_utilization	Carbohydrates	Monosaccharides
Predicted regulator of ribose utilization, LacI family	D-ribose_utilization	Carbohydrates	Monosaccharides
Antitoxin YafN	A_toxin-antitoxin_module_cotranscribed_with_DinB	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Toxin YafO	A_toxin-antitoxin_module_cotranscribed_with_DinB	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Uncharacterized acetyltransferase YafP (EC 2.3.1.-)	A_toxin-antitoxin_module_cotranscribed_with_DinB	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Cytosine deaminase (EC 3.5.4.1)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
Cytosine permease	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
N-carbamoylsarcosine amidase (EC 3.5.1.59)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
Creatinine amidohydrolase (EC 3.5.2.10)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
Creatinase (EC 3.5.3.3)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
N-methylhydantoinase A (EC 3.5.2.14)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
N-methylhydantoinase B (EC 3.5.2.14)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
Sarcosine dehydrogenase (EC 1.5.99.1)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
N-methylhydantoinase (ATP-hydrolyzing) (EC 3.5.2.14)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
Dimethylglycine dehydrogenase (EC 1.5.99.2)	Creatine_and_Creatinine_Degradation	Amino Acids and Derivatives	
ComF operon protein A, DNA transporter ATPase	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
ComF operon protein C	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Competence protein CoiA	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComC, processing protease	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComEA, DNA receptor	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComEC, DNA transport	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGA, access of DNA to ComEA	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGB, access of DNA to ComEA	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Negative regulator of genetic competence MecA	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
DNA-entry nuclease (Competence-specific nuclease) (EC 3.1.30.-)	Gram_Positive_Competence	DNA Metabolism	DNA uptake, competence
Alpha-fimbriae chaperone protein	&#945;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-fimbriae major subunit	&#945;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-fimbriae usher protein	&#945;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Alpha-fimbriae tip adhesin	&#945;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
Uncharacterized protein YtfM precursor	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
UPF0131 protein YtfP	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
Uncharacterized protein YtfN	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, permease protein YtfT	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, permease protein YjfF	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)	Putative_sugar_ABC_transporter_(ytf_cluster)	Clustering-based subsystems	Carbohydrates
hypothetical protein SKA53_09994	CBSS-89187.3.peg.2957	Clustering-based subsystems	tRNA sulfuration
Peptide deformylase (EC 3.5.1.88)	CBSS-89187.3.peg.2957	Clustering-based subsystems	tRNA sulfuration
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	CBSS-89187.3.peg.2957	Clustering-based subsystems	tRNA sulfuration
Glutathione S-transferase domain protein	CBSS-89187.3.peg.2957	Clustering-based subsystems	tRNA sulfuration
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	CBSS-89187.3.peg.2957	Clustering-based subsystems	tRNA sulfuration
Glutathione S-transferase, omega (EC 2.5.1.18)	CBSS-89187.3.peg.2957	Clustering-based subsystems	tRNA sulfuration
Transposase	Transposases	Experimental Subsystems	Transposable elements
Transposase and inactivated derivatives	Transposases	Experimental Subsystems	Transposable elements
transposase	Transposases	Experimental Subsystems	Transposable elements
Transposase and inactivated derivatives, IS30 family	Transposases	Experimental Subsystems	Transposable elements
Transposase and inactivated derivatives, IS5 family	Transposases	Experimental Subsystems	Transposable elements
Transposase and inactivated derivative	Transposases	Experimental Subsystems	Transposable elements
TRANSPOSASE	Transposases	Experimental Subsystems	Transposable elements
Bacteriocin prepeptide or inducing factor for bacteriocin synthesis	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Prebacteriocin	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Three-component quorum-sensing regulatory system, sensor histidine kinase	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Three-component quorum-sensing regulatory system, response regulator	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin ABC-transporter, ATP-binding and permease component	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin ABC-transporter, putative component	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin immunity protein (putative), membrane-bound protease CAAX family	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Three-component quorum-sensing regulatory system, inducing peptide for bacteriocin biosynthesis	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin ABC-transporter, auxillary protein	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin immunity protein	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
immunity protein PlnP, membrane-bound protease CAAX family	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
bacteriocin precursor peptide PlnE (putative)	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
plantaricin biosynthesis protein PlnS	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
integral membrane protein plnV, membrane-bound protease CAAX family	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
integral membrane protein PlnW, membrane-bound protease CAAX family	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
plantaricin biosynthesis protein PlnX (putative)	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
plantaricin biosynthesis protein PlnY (putative)	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
plantaricin biosynthesis protein PlnR	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
immunity protein PlnL	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
bacteriocin precursor peptide PlnK (putative)	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
bacteriocin precursor peptide PlnJ (putative)	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
immunity protein PlnM	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
bacteriocin precursor peptide PlnN (putative)	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
plantaricin biosynthesis protein PlnO	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
plantaricin biosynthesis protein PlnQ	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
bacteriocin precursor peptide PlnF (putative)	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
integral membrane protein PlnT, membrane-bound protease CAAX family	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
integral membrane protein PlnU, membrane-bound protease CAAX family	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin gassericin K7 B	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin gassericin K7 B complemental factor, putative	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin gassericin K7 B immunity protein, putative	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin ABP-118, alpha peptide precursor	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Bacteriocin ABP-118, beta peptide precursor	Bacteriocins_in_Lactobacilli	Virulence, Disease and Defense	Bacteriocins, ribosomally synthesized antibacterial peptides
Allantoinase (EC 3.5.2.5)	Allantoin_Utilization	Nitrogen Metabolism	
Allantoate amidohydrolase (EC 3.5.3.9)	Allantoin_Utilization	Nitrogen Metabolism	
Ureidoglycolate dehydrogenase (EC 1.1.1.154)	Allantoin_Utilization	Nitrogen Metabolism	
Ureidoglycolate hydrolase (EC 3.5.3.19)	Allantoin_Utilization	Nitrogen Metabolism	
Glyoxylate carboligase (EC 4.1.1.47)	Allantoin_Utilization	Nitrogen Metabolism	
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	Allantoin_Utilization	Nitrogen Metabolism	
Glycerate kinase (EC 2.7.1.31)	Allantoin_Utilization	Nitrogen Metabolism	
Negative regulator of allantoin and glyoxylate utilization operons	Allantoin_Utilization	Nitrogen Metabolism	
DNA-binding transcriptional activator of the allD operon	Allantoin_Utilization	Nitrogen Metabolism	
Allantoin permease	Allantoin_Utilization	Nitrogen Metabolism	
Allantoicase (EC 3.5.3.4)	Allantoin_Utilization	Nitrogen Metabolism	
Flagellar motor switch protein FliM	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar motor switch protein FliN	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FliP	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FliR	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar motor switch protein FliG	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellum-specific ATP synthase FliI	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FlhB	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar M-ring protein FliF	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar hook-length control protein FliK	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FliQ	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FlhA	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FlhF	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar assembly protein FliH	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FliL	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar basal-body rod protein FlgF	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar motor rotation protein MotA	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar basal-body rod protein FlgG	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
Flagellar biosynthesis protein FliO	Flagellum-CBSS-483179.3.peg.2258	Experimental Subsystems	
UPF0129 protein MJ1474	Methanogenesis_strays	Respiration	
Uncharacterized HTH-type transcriptional regulator MJ0272	Methanogenesis_strays	Respiration	
Methyl coenzyme M reductase system component A2	Methanogenesis_strays	Respiration	
Methyl coenzyme M reductase system component A2 homolog	Methanogenesis_strays	Respiration	
Ni2+-binding GTPase involved in regulation of expression and maturation of hydrogenase	Methanogenesis_strays	Respiration	
Selenophosphate synthetase-related protein MJ0640	Methanogenesis_strays	Respiration	
UPF0288 protein MJ1412	Methanogenesis_strays	Respiration	
Uncharacterized ABC transporter ATP-binding protein MJ0121	Methanogenesis_strays	Respiration	
Uncharacterized ferredoxin MJ0099	Methanogenesis_strays	Respiration	
Uncharacterized ferredoxin oxidoreductase MJ0100	Methanogenesis_strays	Respiration	
Uncharacterized protein MA3991	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0054	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0065	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0094	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0119	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0404	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0405	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0498	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0800	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0802	Methanogenesis_strays	Respiration	
Putative coenzyme F420-dependent oxidoreductase MJ1349	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0157	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0164	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0241	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0114	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0163	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0235	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0239	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0248	Methanogenesis_strays	Respiration	
Uncharacterized protein MJ0259	Methanogenesis_strays	Respiration	
Flagellar protein FlgT	Additional_flagellar_genes_in_Vibrionales	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar protein FlgP	Additional_flagellar_genes_in_Vibrionales	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar protein FlgO	Additional_flagellar_genes_in_Vibrionales	Motility and Chemotaxis	Flagellar motility in Prokaryota
Membrane bound hydrogenase, MbhC subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhA subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhF subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhH subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhB subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhG subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, NiFe-hydrogenase small subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, 4Fe-4S cluster-binding subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhI subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhM subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Membrane bound hydrogenase, MbhE subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Mbh11 membrane bound hydrogenase beta	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Energy-conserving [NiFe] hydrogenase (ferredoxin) beta subunit	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	CBSS-69014.3.peg.2094	Clustering-based subsystems	Membrane-bound hydrogenase
Alkanesulfonates-binding protein	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Alkanesulfonate monooxygenase (EC 1.14.14.5)	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Alkanesulfonates ABC transporter ATP-binding protein	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Organosulfonate utilization protein SsuF	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
FMN reductase (EC 1.5.1.29)	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Alkanesulfonates transport system permease protein	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
sulfonate monooxygenase	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
probable dibenzothiophene desulfurization enzyme	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Arylsulfatase (EC 3.1.6.1)	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Dibenzothiophene desulfurization enzyme B	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Sulfate ester binding protein	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Putative alkylsulfatase (EC 1.14.11.17)	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Putative arylsulfatase regulatory protein	Alkanesulfonate_assimilation	Sulfur Metabolism	Organic sulfur assimilation
Dimeric dUTPase (EC 3.6.1.23)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
5'-nucleotidase YjjG (EC 3.1.3.5)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
5-nucleotidase SurE (EC 3.1.3.5)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Nucleotidase YfbR, HD superfamily	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Inosine/xanthosine triphosphatase (EC 3.6.1.-)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Putative HTH-type transcriptional regulator ybaO	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Putative phosphatase YigL, haloacid dehalogenase-like phosphatase family	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Lysophospholipase L2 (EC 3.1.1.5)	Housecleaning_nucleoside_triphosphate_pyrophosphatases	Nucleosides and Nucleotides	Detoxification
Ribonuclease BN (EC 3.1.-.-)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Sensor histidine kinase VraS	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Acyl-CoA hydrolase (EC 3.1.2.20)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Hypothetical protein SAV1869	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Hypothetical protein SAV1877	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Hypothetical protein FIG009695	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Hypothetical protein YfkK	CBSS-176280.1.peg.1561	Clustering-based subsystems	
A/G-specific adenine glycosylase (EC 3.2.2.-)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
ThiJ/PfpI family protein	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
FIG133424: Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Two component transcriptional regulator VraR	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Teichoic acid translocation permease protein TagG	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Transporter associated with VraSR	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)	CBSS-176280.1.peg.1561	Clustering-based subsystems	
FIG010063: hypothetical protein	CBSS-176280.1.peg.1561	Clustering-based subsystems	
Transcription regulator CDS_ID OB0894	CBSS-176280.1.peg.1561	Clustering-based subsystems	
CBSS-74546.3.peg.720: hypothetical protein	CBSS-74546.3.peg.720	Clustering-based subsystems	
FIG023675: hypothetical protein	CBSS-74546.3.peg.720	Clustering-based subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	CBSS-74546.3.peg.720	Clustering-based subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	CBSS-74546.3.peg.720	Clustering-based subsystems	
Spore coat protein A	Spore_Coat	Clustering-based subsystems	
Spore coat protein B	Spore_Coat	Clustering-based subsystems	
Spore coat protein C	Spore_Coat	Clustering-based subsystems	
Inner spore coat protein D	Spore_Coat	Clustering-based subsystems	
Outer spore coat protein E	Spore_Coat	Clustering-based subsystems	
Spore coat protein F	Spore_Coat	Clustering-based subsystems	
Spore coat protein G	Spore_Coat	Clustering-based subsystems	
Inner spore coat protein H	Spore_Coat	Clustering-based subsystems	
Polypeptide composition of the spore coat; required for the assembly of CotJC	Spore_Coat	Clustering-based subsystems	
Polypeptide composition of the spore coat protein CotJC	Spore_Coat	Clustering-based subsystems	
Small, acid-soluble spore protein O	Spore_Coat	Clustering-based subsystems	
Small, acid-soluble spore protein P	Spore_Coat	Clustering-based subsystems	
Spore coat protein M	Spore_Coat	Clustering-based subsystems	
Spore coat protein S	Spore_Coat	Clustering-based subsystems	
Spore coat protein T precursor	Spore_Coat	Clustering-based subsystems	
Spore coat protein V	Spore_Coat	Clustering-based subsystems	
Spore coat protein W	Spore_Coat	Clustering-based subsystems	
Spore coat protein X	Spore_Coat	Clustering-based subsystems	
Spore coat protein Y	Spore_Coat	Clustering-based subsystems	
Spore coat protein Z	Spore_Coat	Clustering-based subsystems	
Stage IV sporulation protein A	Spore_Coat	Clustering-based subsystems	
Stage VI sporulation protein D	Spore_Coat	Clustering-based subsystems	
Manganese superoxide dismutase (EC 1.15.1.1)	Spore_Coat	Clustering-based subsystems	
Polypeptide composition of the spore coat protein CotJB	Spore_Coat	Clustering-based subsystems	
Major transcriptional regulator of spore coat formation GerE	Spore_Coat	Clustering-based subsystems	
Glutaredoxin 3 (Grx1)	Glutaredoxin_3_and_Glutathione_synthetase_cluster	Clustering-based subsystems	
Glutathione synthetase (EC 6.3.2.3)	Glutaredoxin_3_and_Glutathione_synthetase_cluster	Clustering-based subsystems	
Glutaredoxin 3	Glutaredoxin_3_and_Glutathione_synthetase_cluster	Clustering-based subsystems	
Serine acetyltransferase (EC 2.3.1.30)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase (EC 2.5.1.47)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase B (EC 2.5.1.47)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Adenylylsulfate kinase (EC 2.7.1.25)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transport system permease protein CysT	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transport system permease protein CysW	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate and thiosulfate binding protein CysP	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transporter, CysZ-type	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cys regulon transcriptional activator CysB	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate permease	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-lyase (EC 4.4.1.1)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-synthase (EC 4.2.1.22)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate permease, Trk-type	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase A (EC 2.5.1.47)	Cysteine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Ferredoxin, 2Fe-2S	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Copper metallochaperone, bacterial analog of Cox17 protein	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Putative Dyp-type peroxidase, associated with bacterial analog of Cox17 protein	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Sco1/SenC/PrrC protein family	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Hypotehtical protein in Cytochrome oxidase biogenesis cluster	Biogenesis_of_cytochrome_c_oxidases	Respiration	
Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-)	CBSS-243277.1.peg.4359	Clustering-based subsystems	
Protein YcgL	CBSS-243277.1.peg.4359	Clustering-based subsystems	
FIG094199: Fumarylacetoacetate hydrolase	CBSS-243277.1.peg.4359	Clustering-based subsystems	
YcgN (Fragment)	CBSS-243277.1.peg.4359	Clustering-based subsystems	
DNA-directed RNA polymerase gamma subunit (EC 2.7.7.6), chloroplast	RNA_polymerase_chloroplast	RNA Metabolism	Transcription
DNA-directed RNA polymerase delta (= beta'') subunit (EC 2.7.7.6), chloroplast	RNA_polymerase_chloroplast	RNA Metabolism	Transcription
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6), chloroplast	RNA_polymerase_chloroplast	RNA Metabolism	Transcription
DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), chloroplast	RNA_polymerase_chloroplast	RNA Metabolism	Transcription
DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), chloroplast	RNA_polymerase_chloroplast	RNA Metabolism	Transcription
Methanophenazine hydrogenase large subunit (EC 1.12.98.3)	Methanophenazine_hydrogenase	Respiration	Electron donating reactions
Methanophenazine hydrogenase small subunit precursor (EC 1.12.98.3)	Methanophenazine_hydrogenase	Respiration	Electron donating reactions
Methanophenazine hydrogenase cytochrome b subunit (EC 1.12.98.3)	Methanophenazine_hydrogenase	Respiration	Electron donating reactions
Methanophenazine hydrogenase maturation protease (EC 3.4.24.-)	Methanophenazine_hydrogenase	Respiration	Electron donating reactions
tRNA-guanine transglycosylase (EC 2.4.2.29)	preQ1_salvage	Experimental Subsystems	
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	preQ1_salvage	Experimental Subsystems	
Putative preQ0 transporter	preQ1_salvage	Experimental Subsystems	
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	preQ1_salvage	Experimental Subsystems	
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	preQ1_salvage	Experimental Subsystems	
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	preQ1_salvage	Experimental Subsystems	
Transmembrane component STY3231 of energizing module of queuosine-regulated ECF transporter	preQ1_salvage	Experimental Subsystems	
ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter	preQ1_salvage	Experimental Subsystems	
ATPase component STY3233 of energizing module of queuosine-regulated ECF transporter	preQ1_salvage	Experimental Subsystems	
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	preQ1_salvage	Experimental Subsystems	
N-3-oxooctanoyl-L-homoserine lactone synthase	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-3-oxohexanoyl-L-homoserine lactone synthase	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
Quorum-sensing transcriptional activator YspR	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
Homoserine lactone synthase YpeI	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
Quorum-sensing transcriptional activator YpeR	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-3-oxooctanoyl-L-homoserine lactone quorum-sensing transcriptional activator	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-butyryl-L-homoserine lactone quorum-sensing transcriptional activator	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-3-oxododecanoyl-L-homoserine lactone quorum-sensing transcriptional activator	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
N-acyl homoserine lactone hydrolase	Quorum_sensing_in_Yersinia	Regulation and Cell signaling	Quorum sensing and biofilm formation
SSU ribosomal protein S14e (S11p)	Nucleolar_protein_complex	Protein Metabolism	Protein biosynthesis
Collagen alpha 1(I) chain precursor	Nucleolar_protein_complex	Protein Metabolism	Protein biosynthesis
Secretion system effector SseB	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system effector SseC	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system regulator: Sensor component (EC 2.7.3.-) (EC 2.7.1.40)	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system chaparone SscA	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaD	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaC	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaJ	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system regulator of DegU/UvrY/BvgA type	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system chaparone SscB	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaK	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaL	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaG	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system effector SseG	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaH	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system effector SseD	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system effector SseF	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system effector SsaE	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system effector SseE	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaI	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system effector SseA	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Putative pathogenicity island protein	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus SsaB	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Secretion system apparatus protein SsaM	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid)	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
COG0840: Methyl-accepting chemotaxis protein	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Putative type III secretion apparatus	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Putative pathogenicity island effector protein	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Putative Secretion system (TypeIII) protein	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
hypothetical protein SG1285	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Putative type III secretion apparatus precursor	CBSS-343509.6.peg.2644	Clustering-based subsystems	Type III secretion system related
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	ABC transporters
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	ABC transporters
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	ABC transporters
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	ABC transporters
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	ABC transporters
NTD biosynthesis operon protein NtdA	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	Aminosugars
NTD biosynthesis operon putative hydrolase NtdB (EC 3.-.-.-)	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	Aminosugars
NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	Aminosugars
NTD biosynthesis operon regulator NtdR	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	Aminosugars
Surface presentation of antigens protein SpaO	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Surface presentation of antigens protein SpaN (Invasion protein InvJ)	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
cell invasion protein SipB	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Invasion protein InvA	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Surface presentation of antigens protein SpaQ	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Cell invasion protein sipC (Effector protein SipC)	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Surface presentation of antigens protein SpaK (Invasion protein InvB)	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Surface presentation of antigens protein SpaS	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Probable ATP synthase SpaL (EC 3.6.3.14) (Invasion protein InvC)	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Chaperone protein SicA (Salmonella invasin chaperone)	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Invasion protein InvE	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Cell invasion protein SipD (Salmonella invasion protein D)	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Surface presentation of antigens protein SpaP	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Surface presentation of antigens protein SpaR	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Protein InvG precursor	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Surface presentation of antigens protein SpaM	Salmonella_invasion_locus	Virulence, Disease and Defense	Invasion and intracellular resistance
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	Carboxysome_FM_working_copy	Experimental Subsystems	
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	Carboxysome_FM_working_copy	Experimental Subsystems	
Carboxysome protein CcmN	Carboxysome_FM_working_copy	Experimental Subsystems	
Carboxysome protein CcmM	Carboxysome_FM_working_copy	Experimental Subsystems	
Carboxysome protein CcmL	Carboxysome_FM_working_copy	Experimental Subsystems	
carboxysome shell protein CsoS1	Carboxysome_FM_working_copy	Experimental Subsystems	
carboxysome shell protein CsoS2	Carboxysome_FM_working_copy	Experimental Subsystems	
carboxysome shell protein CsoS3	Carboxysome_FM_working_copy	Experimental Subsystems	
putative carboxysome peptide A	Carboxysome_FM_working_copy	Experimental Subsystems	
putative carboxysome peptide B	Carboxysome_FM_working_copy	Experimental Subsystems	
mRNA 3-end processing factor	CBSS-313593.3.peg.1152	Clustering-based subsystems	
ATP-dependent DNA ligase (EC 6.5.1.1) LigC	CBSS-313593.3.peg.1152	Clustering-based subsystems	
FIG003033: Helicase domain protein	CBSS-313593.3.peg.1152	Clustering-based subsystems	
FIG006285: hypothetical protein	CBSS-313593.3.peg.1152	Clustering-based subsystems	
Penicillin-binding protein AmpH	Peptidoglycan_Crosslinking_of_Peptide_Stems	Cell Wall and Capsule	
L,D-transpeptidase YcfS	Peptidoglycan_Crosslinking_of_Peptide_Stems	Cell Wall and Capsule	
L,D-transpeptidase ErfK	Peptidoglycan_Crosslinking_of_Peptide_Stems	Cell Wall and Capsule	
L,D-transpeptidase YbiS	Peptidoglycan_Crosslinking_of_Peptide_Stems	Cell Wall and Capsule	
L,D-transpeptidase YcbB	Peptidoglycan_Crosslinking_of_Peptide_Stems	Cell Wall and Capsule	
L,D-transpeptidase YnhG	Peptidoglycan_Crosslinking_of_Peptide_Stems	Cell Wall and Capsule	
Sulfate permease	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Adenylylsulfate kinase (EC 2.7.1.25)	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Serine acetyltransferase (EC 2.3.1.30)	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
Cys regulon transcriptional activator CysB	Superpathway_of_cysteine_biosynthesis	Experimental Subsystems	
diptheria toxin resistance protein required for diphthamide biosynthesis (Saccharomyces)-like 1	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Diphthamide biosynthesis protein 2 (Diphtheria toxin resistance protein 2)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Diphthamide biosynthesis protein 3 (Kluyveromyces lactis toxin-insensitive protein 11)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Diphthamide biosynthesis protein 4 (J protein type 3)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Diphthine synthase (EC 2.1.1.98)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Duf71: Diphthamide synthesis Dph6	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Translation elongation factor 2	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Porphobilinogen deaminase (EC 2.5.1.61)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
S-adenosylhomocysteine deaminase (EC 3.5.4.28)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Endoribonuclease L-PSP	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Asparagine synthetase (EC 6.3.5.4)	Diphthamide_biosynthesis	Protein Metabolism	Protein processing and modification
Chromosomal replication initiator protein DnaA	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
Chromosome (plasmid) partitioning protein ParA	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
Chromosome (plasmid) partitioning protein ParB	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
DNA gyrase subunit A (EC 5.99.1.3)	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
DNA gyrase subunit B (EC 5.99.1.3)	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
DNA polymerase III beta subunit (EC 2.7.7.7)	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
DNA recombination and repair protein RecF	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
GTPase and tRNA-U34 5-formylation enzyme TrmE	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
Inner membrane protein translocase component YidC, long form	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
LSU ribosomal protein L34p	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
Protein YidD	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
Ribonuclease P protein component (EC 3.1.26.5)	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
rRNA small subunit methyltransferase, glucose inhibited division protein GidB	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
RNA-binding protein Jag	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
Inner membrane protein translocase component YidC, short form OxaI-like	Cell_Division_Subsystem_including_YidCD	Clustering-based subsystems	Cell Division
P-hydroxybenzoate hydroxylase (EC 1.14.13.2)	p-Hydroxybenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
4-hydroxybenzoate transporter	p-Hydroxybenzoate_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
UPF0234 protein YajQ	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
YbbM seven transmembrane helix protein	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
UPF0434 protein YcaR	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
YpfJ protein, zinc metalloprotease superfamily	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
Putative oxidoreductase YncB	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
YciL protein	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
Cell division protein BolA	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
YrbA protein	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
UPF0265 protein YeeX	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
YbbL ABC transporter ATP-binding protein	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
DUF1022 domain-containing protein	Broadly_distributed_proteins_not_in_subsystems	Miscellaneous	
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	Isobutyryl-CoA_to_Propionyl-CoA_Module	Carbohydrates	Organic acids
Plasmid replication protein RepA	Plasmid_replication	DNA Metabolism	DNA replication
Plasmid replication protein RepB	Plasmid_replication	DNA Metabolism	DNA replication
Chromosome (plasmid) partitioning protein ParA	Plasmid_replication	DNA Metabolism	DNA replication
Chromosome (plasmid) partitioning protein ParB	Plasmid_replication	DNA Metabolism	DNA replication
Plasmid replication protein RepC	Plasmid_replication	DNA Metabolism	DNA replication
ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component	ABC_transporter_[iron.B12.siderophore.hemin]	Iron acquisition and metabolism	
ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component	ABC_transporter_[iron.B12.siderophore.hemin]	Iron acquisition and metabolism	
ABC transporter (iron.B12.siderophore.hemin) , permease component	ABC_transporter_[iron.B12.siderophore.hemin]	Iron acquisition and metabolism	
Outer membrane (iron.B12.siderophore.hemin) receptor	ABC_transporter_[iron.B12.siderophore.hemin]	Iron acquisition and metabolism	
BatA (Bacteroides aerotolerance operon)	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
MoxR-like ATPase in aerotolerance operon	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
TPR domain protein in aerotolerance operon	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
hypothetical protein PA3071	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
BatB	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
BatC	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
BatD	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
BatE	Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	Clustering-based subsystems	
Stage III sporulation protein AE	SpoVS_protein_family	Dormancy and Sporulation	
Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)	SpoVS_protein_family	Dormancy and Sporulation	
SpoVS-related protein, type 4	SpoVS_protein_family	Dormancy and Sporulation	
SpoVS-related protein, type 5	SpoVS_protein_family	Dormancy and Sporulation	
SpoVS-related protein, type 1	SpoVS_protein_family	Dormancy and Sporulation	
SpoVS-related protein, type 2	SpoVS_protein_family	Dormancy and Sporulation	
SpoVS-related protein, type 3	SpoVS_protein_family	Dormancy and Sporulation	
Pyrophosphatase Na(+) K(+) translocating	Na_dependent_energetics	Experimental Subsystems	
NADPH:quinone oxidoreductase	Na_dependent_energetics	Experimental Subsystems	
Malonate decarboxylase alpha subunit	Na_dependent_energetics	Experimental Subsystems	
Malonate decarboxylase beta subunit	Na_dependent_energetics	Experimental Subsystems	
Malonate decarboxylase gamma subunit	Na_dependent_energetics	Experimental Subsystems	
Malonate decarboxylase delta subunit	Na_dependent_energetics	Experimental Subsystems	
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Streptococcal_Hyaluronic_Acid_Capsule	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hyaluronan synthase (EC 2.4.1.212)	Streptococcal_Hyaluronic_Acid_Capsule	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-glucose dehydrogenase (EC 1.1.1.22)	Streptococcal_Hyaluronic_Acid_Capsule	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)	A_Glutathione-dependent_Thiol_Reductase_Associated_with_a_Step_in_Lysine_Biosynthesis	Clustering-based subsystems	Lysine Biosynthesis
FIG138056: a glutathione-dependent thiol reductase	A_Glutathione-dependent_Thiol_Reductase_Associated_with_a_Step_in_Lysine_Biosynthesis	Clustering-based subsystems	Lysine Biosynthesis
FIG002188: hypothetical protein	CBSS-211586.1.peg.2352	Clustering-based subsystems	
FIG002465: BNR repeat protein	CBSS-211586.1.peg.2352	Clustering-based subsystems	
FIG005548: transport protein	CBSS-211586.1.peg.2352	Clustering-based subsystems	
FIG067310: hypothetical protein	CBSS-211586.1.peg.2352	Clustering-based subsystems	
ABC-type polysaccharide/polyol phosphate export systems, permease component	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide ABC transporter, permease protein KpsM	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis/export periplasmic protein WcbA	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system inner membrane protein KpsE	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system protein KpsC	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsule polysaccharide export protein	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
O-antigen export system permease protein RfbD	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-glucose 4-epimerase (EC 5.1.3.2)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase (EC 2.4.1.-)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L- rhamnosyltransferase (EC 2.4.1.-)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
ABC-transporter (ATP-binding protein) -possibly involved in cell wall localization and side chain formation of rhamnose-glucose polysaccharide	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Heteropolysaccharide repeat unit export protein	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
putative glycosyltransferase - possibly involved in cell wall localization and side chain formation of rhamnose-glucose polysaccharide	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
rhamnose-containing polysacharide translocation permease	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Teichoic acid translocation permease protein TagG	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
O-antigen export system, permease protein	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
capsular polysaccharide biosynthesis protein	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsule polysaccharide export inner-membrane protein	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysialic acid transport protein KpsM	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide ABC transporter, ATP-binding protein	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
ABC transporter of LPS O-antigen, Wzm	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
polysaccharide ABC transporter, permease protein (RfbA-1)	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysialic acid transport protein KpsD precursor	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsule polysaccharide modification protein LipA	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
putative polysialic acid transport protein	Rhamnose_containing_glycans	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Dihydrofolate reductase, phage-associated	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
Thioredoxin, phage-associated	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
3'-phosphatase, 5'-polynucleotide kinase, phage-associated	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
Glutaredoxin	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
Thymidine kinase	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA adenine methyltransferase, phage-associated	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
dTMP thymidylate synthase	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA methyl transferase, phage-associated	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
Adenine DNA methyltransferase, phage-associated	Phage_DNA_synthesis	Experimental Subsystems	Phages, Prophages, Transposable elements
Butyrate kinase (EC 2.7.2.7)	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
hypothetical protein TM1757	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
phosphotransbutyrylase (EC 2.3.1.19)	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
uncharacterized secreted protein, YBBR Bacillus subtilis homolog	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
Pyruvate synthase subunit porB (EC 1.2.7.1)	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
thiamine pyrophosphate enzyme domain protein TPP-binding	CBSS-335541.4.peg.1350	Clustering-based subsystems	2-oxoglutarate oxidoreductase cluster in Clostridia
L-carnitine/gamma-butyrobetaine antiporter	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Carnitinyl-CoA dehydratase (EC 4.2.1.-)	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Carnitine racemase (EC 5.-.-.-)	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Carnitine operon protein CaiE	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Transcriptional activatory protein CaiF	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Electron transfer flavoprotein, beta subunit FixA	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Electron transfer flavoprotein, alpha subunit FixB	Carnitine_Metabolism_in_Microorganisms	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
NRPS loading module Thr-PG-PG-Thr	Nonribosomal_peptide_synthetases_(NRPS)_in_Frankia_sp._Ccl3	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
NRPS module 2 PG-PG-Asn	Nonribosomal_peptide_synthetases_(NRPS)_in_Frankia_sp._Ccl3	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
NRPS module 3 PG-PG	Nonribosomal_peptide_synthetases_(NRPS)_in_Frankia_sp._Ccl3	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
NRPS module 4 PG-Ser-Gly-Thr	Nonribosomal_peptide_synthetases_(NRPS)_in_Frankia_sp._Ccl3	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Type II, 5-methyl-cytosine DNA methyltransferase	Phage_DNA_methyltransferases	Phages, Prophages, Transposable elements	Phages, Prophages
Type II, N6M-methyladenine DNA methyltransferase (group beta)	Phage_DNA_methyltransferases	Phages, Prophages, Transposable elements	Phages, Prophages
Type II, N-methyl DNA methyltransferase (group alpha)	Phage_DNA_methyltransferases	Phages, Prophages, Transposable elements	Phages, Prophages
Type II, N4M-methylcytosine DNA methyltransferase (group beta)	Phage_DNA_methyltransferases	Phages, Prophages, Transposable elements	Phages, Prophages
Excinuclease ABC subunit A	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC subunit B	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC subunit C	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC subunit A paralog of unknown function	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC subunit A paralog in greater Bacteroides group	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC subunit A, dimeric form	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC subunit A domain protein	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC subunit C domain protein	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease ABC, C subunit-like	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
Excinuclease cho (excinuclease ABC alternative C subunit)	DNA_repair,_UvrABC_system	DNA Metabolism	DNA repair
tRNA-Ala	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Arg	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Asn	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Asp	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Cys	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Gln	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Glu	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Gly	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-His	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ile	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Leu	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Lys	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Met	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Phe	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Pro	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ser	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Thr	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Trp	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Tyr	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Val	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ala-CGC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ala-GGC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Arg-ACG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Arg-CCG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Cys-GCA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Gly-CCC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Gly-GCC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Leu-CAA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Leu-CAG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Leu-GAG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Phe-GAA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Pro-CGG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Pro-GGG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ser-CGA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ser-GGA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Trp-CCA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Val-CAC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Val-GAC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Arg-GCG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Unknown	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-SeC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ala-UGC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Arg-UCU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Asn-GUU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Asp-GUC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Gln-UUG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Glu-UUC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Gly-UCC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-His-GUG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ile-GAU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Leu-UAA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Leu-UAG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Lys-UUU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Met-CAU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Pro-UGG	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ser-GCU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Ser-UGA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Thr-CGU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Thr-GGU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Thr-UGU	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Tyr-GUA	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Val-UAC	tRNAs	Protein Metabolism	Protein biosynthesis
tRNA-Asx	tRNAs	Protein Metabolism	Protein biosynthesis
Ferric iron ABC transporter, ATP-binding protein	Transport_of_Iron	Iron acquisition and metabolism	
Ferric iron ABC transporter, iron-binding protein	Transport_of_Iron	Iron acquisition and metabolism	
Ferric iron ABC transporter, permease protein	Transport_of_Iron	Iron acquisition and metabolism	
Ferric uptake regulation protein FUR	Transport_of_Iron	Iron acquisition and metabolism	
Ferrichrome-iron receptor	Transport_of_Iron	Iron acquisition and metabolism	
Ferrous iron transport protein A	Transport_of_Iron	Iron acquisition and metabolism	
Ferrous iron transport protein B	Transport_of_Iron	Iron acquisition and metabolism	
Iron-regulated protein A precursor	Transport_of_Iron	Iron acquisition and metabolism	
Iron-uptake factor PiuB	Transport_of_Iron	Iron acquisition and metabolism	
Ferrous iron-sensisng transcriptional regulator FeoC	Transport_of_Iron	Iron acquisition and metabolism	
Periplasmic protein p19 involved in high-affinity Fe2+ transport	Transport_of_Iron	Iron acquisition and metabolism	
Putative high-affinity iron permease	Transport_of_Iron	Iron acquisition and metabolism	
Chlorophyll a(b) binding protein, photosystem II CP43 protein (PsbC) homolog	Transport_of_Iron	Iron acquisition and metabolism	
Iron-uptake factor PiuC	Transport_of_Iron	Iron acquisition and metabolism	
Iron-responsive regulator Irr	Transport_of_Iron	Iron acquisition and metabolism	
Iron-dependent repressor IdeR/DtxR	Transport_of_Iron	Iron acquisition and metabolism	
Unknown carbohydrate transporter from TRAP family, substrate-binding component UctP	Unknown_carbohydrate_utilization	Experimental Subsystems	
Unknown carbohydrate transporter from TRAP family, small transmembrane component UctM	Unknown_carbohydrate_utilization	Experimental Subsystems	
Unknown carbohydrate transporter from TRAP family, large transmembrane component UctQ	Unknown_carbohydrate_utilization	Experimental Subsystems	
Unknown carbohydrate utilization transcriptional regulator UctR, RpiR family	Unknown_carbohydrate_utilization	Experimental Subsystems	
Phosphoglycerate dehydrogenase TM0327, putative	Unknown_carbohydrate_utilization	Experimental Subsystems	
Predicted sugar dehydrogenase TM0325	Unknown_carbohydrate_utilization	Experimental Subsystems	
Preprotein translocase subunit SecG (TC 3.A.5.1.1)	CBSS-331978.3.peg.2915	Clustering-based subsystems	
Triosephosphate isomerase (EC 5.3.1.1)	CBSS-331978.3.peg.2915	Clustering-based subsystems	
2-isopropylmalate synthase (EC 2.3.3.13)	Leucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Leucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Leucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Leucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Leucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Probable transcriptional activator for leuABCD operon	Leucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Leu operon leader peptide	Leucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
GTP-binding and nucleic acid-binding protein YchF	EGS_prediction	Experimental Subsystems	Metagenomics
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S12p (S23e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S7p (S5e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S2p (SAe)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L11p (L12e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L1p (L10Ae)	EGS_prediction	Experimental Subsystems	Metagenomics
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L3p (L3e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L4p (L1e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L2p (L8e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L22p (L17e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S3p (S3e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L14p (L23e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L5p (L11e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S8p (S15Ae)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L6p (L9e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S5p (S2e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S13p (S18e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S11p (S14e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L13p (L13Ae)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S9p (S16e)	EGS_prediction	Experimental Subsystems	Metagenomics
Histidyl-tRNA synthetase (EC 6.1.1.21)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S15p (S13e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S19p (S15e)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S17p (S11e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L16p (L10e)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L15p (L27Ae)	EGS_prediction	Experimental Subsystems	Metagenomics
Preprotein translocase secY subunit (TC 3.A.5.1.1)	EGS_prediction	Experimental Subsystems	Metagenomics
LSU ribosomal protein L18p (L5e)	EGS_prediction	Experimental Subsystems	Metagenomics
Leucyl-tRNA synthetase (EC 6.1.1.4)	EGS_prediction	Experimental Subsystems	Metagenomics
SSU ribosomal protein S4p (S9e)	EGS_prediction	Experimental Subsystems	Metagenomics
Valyl-tRNA synthetase (EC 6.1.1.9)	EGS_prediction	Experimental Subsystems	Metagenomics
Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	EGS_prediction	Experimental Subsystems	Metagenomics
RNA binding methyltransferase FtsJ like	CBSS-446462.5.peg.2987	Clustering-based subsystems	
NAD kinase (EC 2.7.1.23)	CBSS-446462.5.peg.2987	Clustering-based subsystems	
DNA repair protein RecN	CBSS-446462.5.peg.2987	Clustering-based subsystems	
FIG005773: conserved membrane protein ML1361	CBSS-446462.5.peg.2987	Clustering-based subsystems	
FIG007481: hypothetical protein	CBSS-446462.5.peg.2987	Clustering-based subsystems	
Foldase clustered with pyrimidine conversion	CBSS-176279.3.peg.1262	Clustering-based subsystems	
Histidine triad (HIT) nucleotide-binding protein, similarity with At5g48545 and yeast YDL125C (HNT1)	CBSS-176279.3.peg.1262	Clustering-based subsystems	
Hypothetical protein SAV1839	CBSS-176279.3.peg.1262	Clustering-based subsystems	
Hypothetical protein SAV1840	CBSS-176279.3.peg.1262	Clustering-based subsystems	
FIG003620: Proteophosphoglycan precursor (Fragment)	CBSS-52598.3.peg.2843	Clustering-based subsystems	alpha-proteobacterial cluster of hypotheticals
FIG017823: ATPase, MoxR family	CBSS-52598.3.peg.2843	Clustering-based subsystems	alpha-proteobacterial cluster of hypotheticals
FIG139612: Possible conserved membrane protein	CBSS-52598.3.peg.2843	Clustering-based subsystems	alpha-proteobacterial cluster of hypotheticals
FIG003603: membrane protein, putative	CBSS-52598.3.peg.2843	Clustering-based subsystems	alpha-proteobacterial cluster of hypotheticals
FIG003492: Threonine dehydrogenase and related Zn-dependent dehydrogenases	CBSS-52598.3.peg.2843	Clustering-based subsystems	alpha-proteobacterial cluster of hypotheticals
Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)	Type_I_Restriction-Modification	DNA Metabolism	
Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)	Type_I_Restriction-Modification	DNA Metabolism	
Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)	Type_I_Restriction-Modification	DNA Metabolism	
repetative hypothetical protein , fig|282458.1.peg.574 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1)	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
hypothetical fig|282458.1.peg.573 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Oxidoreductase ion channel	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
hypothetical fig|282458.1.peg.581 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
hypothetical fig|282458.1.peg.578 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
hypothetical fig|282458.1.peg.572 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
hypothetical fig|282458.1.peg.579 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
hypothetical fig|418127.4.peg.560 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Probable pyridine nucleotide-disulfide oxidoreductase YkgC	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Mercuric reductase (EC 1.16.1.1)	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Alcohol dehydrogenase (EC 1.1.1.1)	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Diphosphomevalonate decarboxylase (EC 4.1.1.33)	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Phosphomevalonate kinase (EC 2.7.4.2)	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
hypothetical fig|282458.1.peg.583 homolog	Staphylococcus_aureus_hypothetical_repetitive_gene_loci	Clustering-based subsystems	
Xylose isomerase (EC 5.3.1.5)	Xylose_utilization	Carbohydrates	Monosaccharides
Xylulose kinase (EC 2.7.1.17)	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose activator XylR (AraC family)	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose ABC transporter, periplasmic xylose-binding protein XylF	Xylose_utilization	Carbohydrates	Monosaccharides
D-xylose transport ATP-binding protein XylG	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose ABC transporter, permease protein XylH	Xylose_utilization	Carbohydrates	Monosaccharides
D-xylose proton-symporter XylE	Xylose_utilization	Carbohydrates	Monosaccharides
D-xylose-specific 1-epimerase (mutarotase)	Xylose_utilization	Carbohydrates	Monosaccharides
Alpha-xylosidase (EC 3.2.1.-)	Xylose_utilization	Carbohydrates	Monosaccharides
Beta-xylosidase (EC 3.2.1.37)	Xylose_utilization	Carbohydrates	Monosaccharides
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)	Xylose_utilization	Carbohydrates	Monosaccharides
Xyloside transporter XynT	Xylose_utilization	Carbohydrates	Monosaccharides
Putative xylulose kinase (EC 2.7.1.17)	Xylose_utilization	Carbohydrates	Monosaccharides
Novel Xylose regulator from LacI family	Xylose_utilization	Carbohydrates	Monosaccharides
Xylonate dehydratase (EC 4.2.1.82)	Xylose_utilization	Carbohydrates	Monosaccharides
predicted 2-keto-3-deoxyxylonate dehydratase	Xylose_utilization	Carbohydrates	Monosaccharides
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Xylose_utilization	Carbohydrates	Monosaccharides
D-xylose 1-dehydrogenase (EC 1.1.1.175)	Xylose_utilization	Carbohydrates	Monosaccharides
Xylonolactonase (EC 3.1.1.68)	Xylose_utilization	Carbohydrates	Monosaccharides
predicted xylose isomerase	Xylose_utilization	Carbohydrates	Monosaccharides
Phosphotransferase system for xylose-containing disaccharide, EIIA component	Xylose_utilization	Carbohydrates	Monosaccharides
Phosphotransferase system for xylose-containing disaccharide, EIIB component	Xylose_utilization	Carbohydrates	Monosaccharides
Phosphotransferase system for xylose-containing disaccharide, EIIC component	Xylose_utilization	Carbohydrates	Monosaccharides
Phosphotransferase system for xylose-containing disaccharide, EIID component	Xylose_utilization	Carbohydrates	Monosaccharides
Xylanase	Xylose_utilization	Carbohydrates	Monosaccharides
D-xylose proton-symporter XylT	Xylose_utilization	Carbohydrates	Monosaccharides
Possible alpha-xyloside ABC transporter, substrate-binding component	Xylose_utilization	Carbohydrates	Monosaccharides
Possible alpha-xyloside ABC transporter, permease component	Xylose_utilization	Carbohydrates	Monosaccharides
Possible alpha-xyloside ABC transporter, ATP-binding component	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose-responsive transcription regulator, ROK family	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose ABC transporter, substrate-binding component	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose ABC transporter, permease component	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose ABC transporter, ATP-binding component	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose oligosaccharides ABC transporter, sugar-binding protein	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose oligosaccharides ABC transporter, permease protein 1	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose oligosaccharides ABC transporter, permease protein 2	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose oligosaccharides ABC transporter, ATP-binding protein 1	Xylose_utilization	Carbohydrates	Monosaccharides
Xylose oligosaccharides ABC transporter, ATP-binding protein 2	Xylose_utilization	Carbohydrates	Monosaccharides
Acetyl xylan esterase (EC 3.1.1.41)	Xylose_utilization	Carbohydrates	Monosaccharides
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )	Xylose_utilization	Carbohydrates	Monosaccharides
Predicted xylose oligosaccharide ABC transporter, substrate-binding component	Xylose_utilization	Carbohydrates	Monosaccharides
Acetyl xylan esterase XylU (EC 3.1.1.41)	Xylose_utilization	Carbohydrates	Monosaccharides
Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8)	Xylose_utilization	Carbohydrates	Monosaccharides
LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
LptA, protein essential for LPS transport across the periplasm	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide ABC transporter, ATP-binding protein LptB	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane lipoprotein carrier protein LolA	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane lipoprotein LolB precursor	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB)	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein Imp, required for envelope biogenesis	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL)	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein assembly factor YaeT precursor	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Uncharacterized ABC transporter, periplasmic component YrbD	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Uncharacterized ABC transporter, ATP-binding protein YrbF	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Uncharacterized ABC transporter, permease component YrbE	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Uncharacterized ABC transporter, auxiliary component YrbC	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Uncharacterized protein YrbK clustered with lipopolysaccharide transporters	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Lipoprotein releasing system transmembrane protein LolC	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Lipoprotein releasing system ATP-binding protein LolD	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Lipoprotein releasing system transmembrane protein LolE	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane chaperone Skp (OmpH) precursor	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
HtrA protease/chaperone protein	Lipopolysaccharide_assembly	Cell Wall and Capsule	Gram-Negative cell wall components
Fructokinase (EC 2.7.1.4)	Sucrose_utilization_Shewanella	Carbohydrates	Di- and oligosaccharides
Sucrose phosphorylase (EC 2.4.1.7)	Sucrose_utilization_Shewanella	Carbohydrates	Di- and oligosaccharides
Predicted sucrose permease, MFS family, FucP subfamily	Sucrose_utilization_Shewanella	Carbohydrates	Di- and oligosaccharides
Predicted sucrose-specific TonB-dependent receptor	Sucrose_utilization_Shewanella	Carbohydrates	Di- and oligosaccharides
Sucrose repressor, LacI family, Shewanella subfamily	Sucrose_utilization_Shewanella	Carbohydrates	Di- and oligosaccharides
Coenzyme F420 hydrogenase alpha subunit (FruA) (EC 1.12.98.1)	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase beta subunit (FruB) (EC 1.12.98.1)	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase gamma subunit (FruG) (EC 1.12.98.1)	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-)	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Putative coenzyme F420-dependent oxidoreductase MJ1349	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase alpha subunit (FrcA) (EC 1.12.98.1)	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase beta subunit (FrcB) (EC 1.12.98.1)	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Coenzyme F420 hydrogenase gamma subunit (FrcG) (EC 1.12.98.1)	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
coenzyme F420-reducing hydrogenase, beta subunit homolog	Coenzyme_F420_hydrogenase	Respiration	Electron donating reactions
Hypothetical protein, bax gene locus	SS_from_gene_cluster:_Bax_gene_locus	Clustering-based subsystems	
Putative Bax protein	SS_from_gene_cluster:_Bax_gene_locus	Clustering-based subsystems	
Probable proline and glycine rich transmembrane protein gene in bax	SS_from_gene_cluster:_Bax_gene_locus	Clustering-based subsystems	
UPF0118 membrane protein YrrI	CBSS-269801.1.peg.2186	Clustering-based subsystems	DNA metabolism
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)	CBSS-269801.1.peg.2186	Clustering-based subsystems	DNA metabolism
Streptolysin S precursor (SagA)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin S biosynthesis protein B (SagB)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin S biosynthesis protein C (SagC)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin S biosynthesis protein D (SagD)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin S self-immunity protein (SagE)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin S biosynthesis protein (SagF)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Export ABC transporter ATP-binding protein	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin S export transmembrane permease (SagH)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin S export transmembrane permease (SagI)	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Asparagine-rich ORFan next to Sag operon	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
Export ABC transporter permease	Streptolysin_S_Biosynthesis_and_Transport	Virulence, Disease and Defense	Toxins and superantigens
SSU ribosomal protein S5p (S2e)	Ribosomal_protein_S5p_acylation	Protein Metabolism	Protein processing and modification
Ribosomal-protein-S5p-alanine acetyltransferase	Ribosomal_protein_S5p_acylation	Protein Metabolism	Protein processing and modification
Ribosomal-protein-L7p-serine acetyltransferase	Ribosomal_protein_S5p_acylation	Protein Metabolism	Protein processing and modification
Spermidine N1-acetyltransferase (EC 2.3.1.57)	Ribosomal_protein_S5p_acylation	Protein Metabolism	Protein processing and modification
Ribosomal-protein-S5p-alanine acetyltransferase related protein	Ribosomal_protein_S5p_acylation	Protein Metabolism	Protein processing and modification
Type III secretion injected virulence protein (YopP,YopJ, induces apoptosis, prevents cytokine induction, inhibits NFkb activation)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion injected virulence protein (YopH,tyrosine phosphatase of FAK and p130cas, prevents phagocytosis)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion negative regulator of effector production protein (LcrQ,YscM, YscM1 and YscM2)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion cytoplasmic protein (YscL)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion cytoplasmic protein (YscK)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion cytoplasmic protein (YscI)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion spans bacterial envelope protein (YscG)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion cytoplasmic protein (YscF)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion protein (YscE)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion inner membrane protein (YscD,homologous to flagellar export components)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion chaperone protein for YopN (SycN,YscB)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion protein (YscA)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion transporter lipoprotein (YscW,VirG)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion inner membrane protein (YscS,homologous to flagellar export components)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion protein (YscP)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion spans bacterial envelope protein (YscO)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion outermembrane contact sensing protein( yopN,Yop4b,LcrE)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion outermembrane negative regulator of secretion (TyeA)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion low calcium response protein (LcrR)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion cytoplasmic plug protein (LcrG)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion cytoplasmic LcrG inhibitor (LcrV,secretion and targeting control protein, V antigen)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion chaperone protein for YopD (SycD)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion host injection protein (YopB)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion host injection and negative regulator protein (YopD)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion possible injected virulence protein (YopM)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion injected virulence protein (EC 3.4.22.-,YopT,cysteine protease,depolymerizes actin filaments of cytoskeleton,causes cytotoxicity)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion negative modulator of injection (YopK,YopQ,controls size of translocator pore)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion injected virulence protein (YopE)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion chaperone protein for YopE (SycE)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion chaperone protein for YopH (SycH)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion chaperone protein for YopT (SycT)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion injected virulence protein (YopO,YpkA,serine-threonine kinase)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
Type III secretion effector protein (YopR, encoded by YscH)	Type_III_secretion_system	Membrane Transport	Protein secretion system, Type III
S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)	Glutathione-dependent_pathway_of_formaldehyde_detoxification	Stress Response	Detoxification
S-formylglutathione hydrolase (EC 3.1.2.12)	Glutathione-dependent_pathway_of_formaldehyde_detoxification	Stress Response	Detoxification
Uncharacterized protein YaiN in in formaldehyde detoxification operon	Glutathione-dependent_pathway_of_formaldehyde_detoxification	Stress Response	Detoxification
Transcriptional regulator, LysR family, in formaldehyde detoxification operon	Glutathione-dependent_pathway_of_formaldehyde_detoxification	Stress Response	Detoxification
Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22)	Glutathione-dependent_pathway_of_formaldehyde_detoxification	Stress Response	Detoxification
Energy conserving hydrogenase Eha associated gene 2	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated polyferredoxin	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha ferredoxin (protein P2)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha large subunit homolog (protein O)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin (protein P3)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha protein M	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha proton-sodium antiporter homolog protein H	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha small subunit homolog (protein N)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein A	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein B	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein C	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein D	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein E	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein F	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein G	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein I2	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein J	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein K2	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein L	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha-associated regulator	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb anchor subunit F	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb ferredoxin-containing protein L	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb integral membrane protein O	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb large subunit (protein N)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb polyferredoxin (protein K)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein A	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein B	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein C	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein D	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein G	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein H	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein I	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein J	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein P	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb protein Q	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb small subunit (protein M)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Ehb transmembrane protein E	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein (protein R)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein (protein S)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein, ribokinase homolog (protein T)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin (protein P)	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin domain (protein P')	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein I	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein K	Mebrane_bound_hydrogenases	Respiration	Reverse electron transport
Attachment invasion locus protein precursor	Flavohaemoglobin	Stress Response	
Chaperone protein HscB	Flavohaemoglobin	Stress Response	
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Flavohaemoglobin	Stress Response	
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Flavohaemoglobin	Stress Response	
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Flavohaemoglobin	Stress Response	
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)	Flavohaemoglobin	Stress Response	
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	Flavohaemoglobin	Stress Response	
H(+)/Cl(-) exchange transporter ClcA	Flavohaemoglobin	Stress Response	
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	Flavohaemoglobin	Stress Response	
Inositol-1-monophosphatase (EC 3.1.3.25)	Flavohaemoglobin	Stress Response	
Iron binding protein IscA for iron-sulfur cluster assembly	Flavohaemoglobin	Stress Response	
Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1)	Flavohaemoglobin	Stress Response	
Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)	Flavohaemoglobin	Stress Response	
Iron-sulfur cluster assembly scaffold protein IscU	Flavohaemoglobin	Stress Response	
Iron-sulfur cluster regulator IscR	Flavohaemoglobin	Stress Response	
Nitric oxide-dependent regulator DnrN or NorA	Flavohaemoglobin	Stress Response	
Nitrite-sensitive transcriptional repressor NsrR	Flavohaemoglobin	Stress Response	
Nitrogen regulatory protein P-II	Flavohaemoglobin	Stress Response	
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation	Flavohaemoglobin	Stress Response	
Probable 3-phenylpropionic acid transporter	Flavohaemoglobin	Stress Response	
Serine hydroxymethyltransferase (EC 2.1.2.1)	Flavohaemoglobin	Stress Response	
tRNA:Cm32/Um32 methyltransferase	Flavohaemoglobin	Stress Response	
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Flavohaemoglobin	Stress Response	
ABC-type Fe3+-siderophore transport system, permease 2 component	Flavohaemoglobin	Stress Response	
Electron transport protein HydN	Flavohaemoglobin	Stress Response	
Membrane protein, suppressor for copper-sensitivity ScsD	Flavohaemoglobin	Stress Response	
Stationary phase inducible protein CsiE	Flavohaemoglobin	Stress Response	
Heme ABC type transporter HtsABC, heme-binding protein	Flavohaemoglobin	Stress Response	
Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)	Flavohaemoglobin	Stress Response	
Nitric oxide reductase activation protein NorD	Flavohaemoglobin	Stress Response	
Nitric oxide reductase activation protein NorQ	Flavohaemoglobin	Stress Response	
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	Flavohaemoglobin	Stress Response	
Anaerobic nitric oxide reductase flavorubredoxin	Flavohaemoglobin	Stress Response	
Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR	Flavohaemoglobin	Stress Response	
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)	Flavohaemoglobin	Stress Response	
FKBP-type peptidyl-prolyl cis-trans isomerase	Flavohaemoglobin	Stress Response	
Glutaredoxin	Flavohaemoglobin	Stress Response	
Macrophage infectivity potentiator	Flavohaemoglobin	Stress Response	
NnrS protein involved in response to NO	Flavohaemoglobin	Stress Response	
Protein F-related protein	Flavohaemoglobin	Stress Response	
Thiol-disulfide isomerase	Flavohaemoglobin	Stress Response	
Iron-sulfur cluster-binding protein, Rieske family	Flavohaemoglobin	Stress Response	
Heme transporter analogous to IsdDEF, ATP-binding protein	Flavohaemoglobin	Stress Response	
Nitrous oxide reductase maturation protein NosF (ATPase)	Flavohaemoglobin	Stress Response	
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Flavohaemoglobin	Stress Response	
Nitrous oxide reductase maturation transmembrane protein NosY	Flavohaemoglobin	Stress Response	
RNA methyltransferase, TrmH family, group 1	Flavohaemoglobin	Stress Response	
Iron compound ABC uptake transporter ATP-binding protein	Flavohaemoglobin	Stress Response	
Nitrous oxide reductase maturation periplasmic protein NosX	Flavohaemoglobin	Stress Response	
2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-)	Flavohaemoglobin	Stress Response	
3-phenylpropionate dioxygenase ferredoxin subunit	Flavohaemoglobin	Stress Response	
3-phenylpropionate dioxygenase, alpha subunit (EC 1.14.12.19)	Flavohaemoglobin	Stress Response	
3-phenylpropionate dioxygenase, beta subunit (EC 1.14.12.19)	Flavohaemoglobin	Stress Response	
Anaerobic sulfite reductase subunit A	Flavohaemoglobin	Stress Response	
Anaerobic sulfite reductase subunit B	Flavohaemoglobin	Stress Response	
Inner membrane thiol:disulfide oxidoreductase, DsbB-like	Flavohaemoglobin	Stress Response	
3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component (EC 1.18.1.3)	Flavohaemoglobin	Stress Response	
3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-)	Flavohaemoglobin	Stress Response	
3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-)	Flavohaemoglobin	Stress Response	
Conserved protein YngD	Flavohaemoglobin	Stress Response	
3-phenylpropionic acid transporter	Flavohaemoglobin	Stress Response	
FIG013268: hypothetical protein	CBSS-279010.5.peg.3166	Clustering-based subsystems	
Putative symporter YjcG	CBSS-279010.5.peg.3166	Clustering-based subsystems	
Leucyl-tRNA synthetase (EC 6.1.1.4)	CBSS-208964.1.peg.3988	Clustering-based subsystems	
LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)	CBSS-208964.1.peg.3988	Clustering-based subsystems	
DNA polymerase III delta subunit (EC 2.7.7.7)	CBSS-208964.1.peg.3988	Clustering-based subsystems	
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)	Purine_conversions	Nucleosides and Nucleotides	Purines
5'-nucleotidase (EC 3.1.3.5)	Purine_conversions	Nucleosides and Nucleotides	Purines
AMP nucleosidase (EC 3.2.2.4)	Purine_conversions	Nucleosides and Nucleotides	Purines
Adenine deaminase (EC 3.5.4.2)	Purine_conversions	Nucleosides and Nucleotides	Purines
Adenine phosphoribosyltransferase (EC 2.4.2.7)	Purine_conversions	Nucleosides and Nucleotides	Purines
Adenosine deaminase (EC 3.5.4.4)	Purine_conversions	Nucleosides and Nucleotides	Purines
Adenylate kinase (EC 2.7.4.3)	Purine_conversions	Nucleosides and Nucleotides	Purines
Adenylosuccinate lyase (EC 4.3.2.2)	Purine_conversions	Nucleosides and Nucleotides	Purines
Adenylosuccinate synthetase (EC 6.3.4.4)	Purine_conversions	Nucleosides and Nucleotides	Purines
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1)	Purine_conversions	Nucleosides and Nucleotides	Purines
GMP reductase (EC 1.7.1.7)	Purine_conversions	Nucleosides and Nucleotides	Purines
GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)	Purine_conversions	Nucleosides and Nucleotides	Purines
Guanine deaminase (EC 3.5.4.3)	Purine_conversions	Nucleosides and Nucleotides	Purines
Guanylate kinase (EC 2.7.4.8)	Purine_conversions	Nucleosides and Nucleotides	Purines
Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Purine_conversions	Nucleosides and Nucleotides	Purines
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Purine_conversions	Nucleosides and Nucleotides	Purines
Inosine-guanosine kinase (EC 2.7.1.73)	Purine_conversions	Nucleosides and Nucleotides	Purines
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Purine_conversions	Nucleosides and Nucleotides	Purines
Nucleoside diphosphate kinase (EC 2.7.4.6)	Purine_conversions	Nucleosides and Nucleotides	Purines
Polyphosphate kinase (EC 2.7.4.1)	Purine_conversions	Nucleosides and Nucleotides	Purines
Possible hypoxanthine oxidase XdhD (EC 1.-.-.-)	Purine_conversions	Nucleosides and Nucleotides	Purines
Purine nucleoside phosphorylase (EC 2.4.2.1)	Purine_conversions	Nucleosides and Nucleotides	Purines
Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)	Purine_conversions	Nucleosides and Nucleotides	Purines
Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Purine_conversions	Nucleosides and Nucleotides	Purines
5'-nucleotidase family protein in cluster with NagD-like phosphatase	Purine_conversions	Nucleosides and Nucleotides	Purines
Deoxyadenosine kinase (EC 2.7.1.76)	Purine_conversions	Nucleosides and Nucleotides	Purines
Deoxyguanosine kinase (EC 2.7.1.113)	Purine_conversions	Nucleosides and Nucleotides	Purines
Nucleotide pyrophosphatase (EC 3.6.1.9)	Purine_conversions	Nucleosides and Nucleotides	Purines
Xanthine oxidase (EC 1.17.3.2)	Purine_conversions	Nucleosides and Nucleotides	Purines
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Purine_conversions	Nucleosides and Nucleotides	Purines
Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6)	Purine_conversions	Nucleosides and Nucleotides	Purines
Adenosine kinase (EC 2.7.1.20)	Purine_conversions	Nucleosides and Nucleotides	Purines
putative Adenosine kinase (EC 2.7.1.20)	Purine_conversions	Nucleosides and Nucleotides	Purines
IMP dehydrogenase related 1 (EC 1.1.1.205)	Purine_conversions	Nucleosides and Nucleotides	Purines
IMP dehydrogenase related 2 (EC 1.7.1.7)	Purine_conversions	Nucleosides and Nucleotides	Purines
dATP pyrophosphohydrolase NudB (EC 3.6.1.-)	Purine_conversions	Nucleosides and Nucleotides	Purines
GMP reductase	Purine_conversions	Nucleosides and Nucleotides	Purines
PTS system, galactitol-specific IIA component (EC 2.7.1.69)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
PTS system, galactitol-specific IIB component (EC 2.7.1.69)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
PTS system, galactitol-specific IIC component (EC 2.7.1.69)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
Galactitol utilization operon repressor	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
6-phosphofructokinase (EC 2.7.1.11)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
PTS system, tagatose-specific IIA-TPr component (EC 2.7.1.69)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
PTS system, tagatose-specific IIBC component (EC 2.7.1.69)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
Tagatose-1-phosphate kinase TagK	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
Tagatose-6-phosphate kinase (EC 2.7.1.144)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
Predicted galactitol operon regulator (Transcriptional antiterminator), BglG family	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
D-tagatose 3-epimerase (EC 5.3.1.-)	D-Tagatose_and_Galactitol_Utilization	Carbohydrates	Monosaccharides
RstA phage-related replication protein	Prophage-encoded_Rst_operon	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
RstB phage-related integrase	Prophage-encoded_Rst_operon	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
RstC phage-related antirepressor	Prophage-encoded_Rst_operon	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
RstR phage-related transcriptional repressor	Prophage-encoded_Rst_operon	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
RstA phage-related replication protein, truncated	Prophage-encoded_Rst_operon	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
RstA phage-related replication protein, frameshift	Prophage-encoded_Rst_operon	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15)	Aromatic_Amin_Catabolism	Metabolism of Aromatic Compounds	
4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)	Aromatic_Amin_Catabolism	Metabolism of Aromatic Compounds	
4-hydroxyphenylacetate 3-monooxygenase, reductase component (EC 1.6.8.-)	Aromatic_Amin_Catabolism	Metabolism of Aromatic Compounds	
Phenylacetaldehyde dehydrogenase (EC 1.2.1.39)	Aromatic_Amin_Catabolism	Metabolism of Aromatic Compounds	
Nitrilotriacetate monooxygenase component B (EC 1.14.13.-)	Aromatic_Amin_Catabolism	Metabolism of Aromatic Compounds	
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Aromatic_Amin_Catabolism	Metabolism of Aromatic Compounds	
Monoamine oxidase (1.4.3.4)	Aromatic_Amin_Catabolism	Metabolism of Aromatic Compounds	
Exopolysaccharide II synthesis transcriptional activator expG	Galactoglucan_Biosynthesis_in_Sinorhizobium	Experimental Subsystems	
ExpC (Putative glycosyltransferase, forming alpha-glycosyl linkages protein)	Galactoglucan_Biosynthesis_in_Sinorhizobium	Experimental Subsystems	
FIG001767: L-rhamnose operon transcriptional activator RhaR	CBSS-211586.1.peg.1606	Clustering-based subsystems	
FIG006238: AzlC family protein	CBSS-211586.1.peg.1606	Clustering-based subsystems	
FIG023406: hypothetical protein	CBSS-211586.1.peg.1606	Clustering-based subsystems	
Flagellar basal-body rod protein FlgB	Flagellum_in_Campylobacter	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar basal-body rod protein FlgC	Flagellum_in_Campylobacter	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook subunit protein	Flagellum_in_Campylobacter	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellar hook-basal body complex protein FliE	Flagellum_in_Campylobacter	Motility and Chemotaxis	Flagellar motility in Prokaryota
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	Flagellum_in_Campylobacter	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaA	Flagellum_in_Campylobacter	Motility and Chemotaxis	Flagellar motility in Prokaryota
Flagellin protein FlaB	Flagellum_in_Campylobacter	Motility and Chemotaxis	Flagellar motility in Prokaryota
Transcriptional regulator NfxB	MexC-MexD-OprJ_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FIG019278: hypothetical protein	CBSS-498211.3.peg.291	Clustering-based subsystems	
FIG017670: hypothetical protein	CBSS-498211.3.peg.291	Clustering-based subsystems	
Universal stress protein family	Universal_stress_protein_family	Stress Response	
Universal stress protein family 7	Universal_stress_protein_family	Stress Response	
Universal stress protein family COG0589	Universal_stress_protein_family	Stress Response	
Universal stress protein family 5	Universal_stress_protein_family	Stress Response	
Universal stress protein family 4	Universal_stress_protein_family	Stress Response	
Universal stress protein family 1	Universal_stress_protein_family	Stress Response	
Universal stress protein A	Universal_stress_protein_family	Stress Response	
Universal stress protein B	Universal_stress_protein_family	Stress Response	
Universal stress protein E	Universal_stress_protein_family	Stress Response	
Universal stress protein family 3	Universal_stress_protein_family	Stress Response	
Universal stress protein C	Universal_stress_protein_family	Stress Response	
Universal stress protein D	Universal_stress_protein_family	Stress Response	
Universal stress protein F	Universal_stress_protein_family	Stress Response	
Universal stress protein G	Universal_stress_protein_family	Stress Response	
Universal stress protein family 2	Universal_stress_protein_family	Stress Response	
Universal stress protein family 8	Universal_stress_protein_family	Stress Response	
Universal stress protein family 6	Universal_stress_protein_family	Stress Response	
Shikimate kinase I (EC 2.7.1.71)	Shikimate_kinase_containing_cluster	Clustering-based subsystems	
3-dehydroquinate synthase (EC 4.2.3.4)	Shikimate_kinase_containing_cluster	Clustering-based subsystems	
DamX, an inner membrane protein involved in bile resistance	Shikimate_kinase_containing_cluster	Clustering-based subsystems	
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72)	Shikimate_kinase_containing_cluster	Clustering-based subsystems	
Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
L-alanine-DL-glutamate epimerase	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
AmpG permease	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
Gamma-D-Glutamyl-meso-Diaminopimelate Amidase	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
Periplasmic Murein Peptide-Binding Protein MppA	Recycling_of_Peptidoglycan_Amino_Acids	Cell Wall and Capsule	
Transposase YfcI	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase YhgA	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase ECW_P1m0012	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase STM0479	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase STM3767	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase STY4875	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase STM474_p1058	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase YPO0076	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase YE1924	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase YE3497	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase KP1_0723	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase KP1_0766	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase CIT292_00810	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase KPN_00447	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase KPN_00596	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase CKO_02684	Transposase_in_enterics	Phages, Prophages, Transposable elements	
Transposase ROD_07081	Transposase_in_enterics	Phages, Prophages, Transposable elements	
2,3-butanediol dehydrogenase, S-alcohol forming, (R)-acetoin-specific (EC 1.1.1.4)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
2,3-butanediol dehydrogenase, S-alcohol forming, (S)-acetoin-specific (EC 1.1.1.76)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetoin (diacetyl) reductase (EC 1.1.1.5)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetolactate synthase large subunit (EC 2.2.1.6)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetolactate synthase small subunit (EC 2.2.1.6)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetolactate synthase, catabolic (EC 2.2.1.6)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Alpha-acetolactate decarboxylase (EC 4.1.1.5)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Transcriptional activator of acetoin dehydrogenase operon AcoR	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
COG0028: Thiamine pyrophosphate-requiring enzymes	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetolactate synthase small subunit (EC 2.2.1.6), predicted	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase (EC 4.2.1.-)	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
TPP-requiring enzyme co-localized with putative O-antigen rfb gene cluster	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetohydroxy acid synthase	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetoin catabolism protein X	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Short-chain alcohol dehydrogenase associated with acetoin utilization	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
TPP-requiring enzyme co-localized with fatty acid metabolic genes	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetolactate synthase small subunit (EC 2.2.1.6), predicted, Archaeal type	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
Acetolactate synthase small subunit (EC 2.2.1.6), predicted, Archaeal type 2	Acetoin,_butanediol_metabolism	Carbohydrates	Fermentation
LysR family regulatory protein CidR	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Holin-like protein CidA	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
CidA-associated membrane protein CidB	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Pyruvate oxidase, CidC	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Autolysis histidine kinase LytS	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Autolysis response regulater LytR	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Antiholin-like protein LrgA	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
LrgA-associated membrane protein LrgB	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Cytidine deaminase (EC 3.5.4.5)	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Preprotein translocase subunit SecG (TC 3.A.5.1.1)	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Acetolactate synthase, catabolic (EC 2.2.1.6)	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Alpha-acetolactate decarboxylase (EC 4.1.1.5)	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Truncated cell surface protein map-w	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Holin-like protein 2	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Holin associated membrane protein 2	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Holin-like protein 1	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Holin associated membrane protein 1	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Holin associated hypothetical protein	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
S-layer protein Sap	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
S-layer protein EA1	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
tRNA-dihydrouridine synthase C (EC 1.-.-.-)	Murein_hydrolase_regulation_and_cell_death	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	2-oxoisovalerate_to_2-isopropyl-3-oxosuccinate_module	Experimental Subsystems	
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	2-oxoisovalerate_to_2-isopropyl-3-oxosuccinate_module	Experimental Subsystems	
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	2-oxoisovalerate_to_2-isopropyl-3-oxosuccinate_module	Experimental Subsystems	
2-isopropylmalate synthase (EC 2.3.3.13)	2-oxoisovalerate_to_2-isopropyl-3-oxosuccinate_module	Experimental Subsystems	
Putative CoA-transferase subunit beta Rv3552/MT3656 (EC 2.8.3.-)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Putative CoA-transferase subunit alpha Rv3551/MT3655 (EC 2.8.3.-)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Probable enoyl-CoA hydratase EchA20 (EC 4.2.1.17)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
2-nitropropane dioxygenase (EC 1.13.11.32)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Probable acetyl-CoA acetyltransferase FadA5 (EC 2.3.1.9)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Putative uncharacterized protein (Hypothetical short-chain type dehydrogenase/reductase)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Probable acyl-CoA dehydrogenase FadE29 (EC 1.3.99.-)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Putative cytochrome P450 125 (EC 1.14.-.-)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Transcriptional factor in putative operon for degradation of branched-chain alkanes, nitroalkanes and may be also cyclic ketones, alkenoic acids	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Probable acyl-CoA dehydrogenase FadE28 (EC 1.3.99.-)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Putative uncharacterized protein BCG_3611	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Probable acetyl-CoA acetyltransferase FadA6 (EC 2.3.1.9)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Possible electron transfer protein FdxB (EC 1.-.-.-)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Putative uncharacterized protein BCG_3619c	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
PPE family protein	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
CysQ, putative	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Short-chain dehydrogenase/reductase SDR	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
FadE30	CBSS-164757.7.peg.5020	Clustering-based subsystems	metabolism of linear and branched-chain alkanes, nitroalkanes and may be cyclic ketones, alkenoic acids
Anti-sigma F factor (EC 2.7.11.1)	SigmaB_stress_responce_regulation	Stress Response	
Phosphoserine phosphatase rsbX (EC 3.1.3.3)	SigmaB_stress_responce_regulation	Stress Response	
RNA polymerase sigma factor SigB	SigmaB_stress_responce_regulation	Stress Response	
RNA polymerase sporulation specific sigma factor SigF	SigmaB_stress_responce_regulation	Stress Response	
RNA polymerase sporulation specific sigma factor SigG	SigmaB_stress_responce_regulation	Stress Response	
RsbR, positive regulator of sigma-B	SigmaB_stress_responce_regulation	Stress Response	
RsbS, negative regulator of sigma-B	SigmaB_stress_responce_regulation	Stress Response	
Serine phosphatase RsbU, regulator of sigma subunit	SigmaB_stress_responce_regulation	Stress Response	
Serine-protein kinase rsbW (EC 2.7.11.1)	SigmaB_stress_responce_regulation	Stress Response	
anti sigma b factor antagonist RsbV	SigmaB_stress_responce_regulation	Stress Response	
anti-sigma B factor RsbT	SigmaB_stress_responce_regulation	Stress Response	
anti-sigma F factor antagonist (spoIIAA-2)	SigmaB_stress_responce_regulation	Stress Response	
RNA polymerase sigma-70 factor	SigmaB_stress_responce_regulation	Stress Response	
putative RNA polymerase sigma factor	SigmaB_stress_responce_regulation	Stress Response	
Putative SigmaB asociated two-component system sensor protein	SigmaB_stress_responce_regulation	Stress Response	
transcriptional regulator, PemK family	SigmaB_stress_responce_regulation	Stress Response	
Putative TEGT family carrier/transport protein	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-)	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
LSU m5C1962 methyltransferase RlmI	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
tRNA 5-methylaminomethyl-2-thiouridine synthase TusC	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
tRNA 5-methylaminomethyl-2-thiouridine synthase TusD	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
Seryl-tRNA synthetase (EC 6.1.1.11)	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
Hypothetical lysR-family transcriptional regulator YdhB	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
tRNA(Cytosine32)-2-thiocytidine synthetase	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
DNA-3-methyladenine glycosylase (EC 3.2.2.20)	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
Cytosine deaminase (EC 3.5.4.1)	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
RNA polymerase associated protein RapA (EC 3.6.1.-)	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
ABC-type polar amino acid transport system, ATPase component	CBSS-326442.4.peg.1852	Clustering-based subsystems	Translation
Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	LMPTP_YfkJ_cluster	Clustering-based subsystems	
Hypothetical protein YfkI	LMPTP_YfkJ_cluster	Clustering-based subsystems	
Ribonuclease BN (EC 3.1.-.-)	LMPTP_YfkJ_cluster	Clustering-based subsystems	
Hypothetical protein YfkK	LMPTP_YfkJ_cluster	Clustering-based subsystems	
Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Protein-export membrane protein SecD (TC 3.A.5.1.1)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Preprotein translocase subunit SecE (TC 3.A.5.1.1)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Protein-export membrane protein SecF (TC 3.A.5.1.1)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Preprotein translocase subunit SecG (TC 3.A.5.1.1)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Preprotein translocase secY subunit (TC 3.A.5.1.1)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Peptidylproline cis-trans-isomerase (EC 5.2.1.8)	HtrA_and_Sec_secretion	Membrane Transport	Protein translocation across cytoplasmic membrane
Multidrug efflux membrane fusion protein MexA	MexA-MexB-OprM_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug efflux transporter MexB	MexA-MexB-OprM_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Outer membrane protein OprM	MexA-MexB-OprM_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcriptional regulator MexR	MexA-MexB-OprM_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Maltodextrin phosphorylase (EC 2.4.1.1)	Glycogen_metabolism	Carbohydrates	Polysaccharides
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Alpha-amylase (EC 3.2.1.1)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen debranching enzyme (EC 3.2.1.-)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen phosphorylase (EC 2.4.1.1)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Periplasmic alpha-amylase (EC 3.2.1.1)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Cytoplasmic alpha-amylase (EC 3.2.1.1)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen biosynthesis protein GlgD, glucose-1-phosphate adenylyltransferase family	Glycogen_metabolism	Carbohydrates	Polysaccharides
Malto-oligosyltrehalose synthase (EC 5.4.99.15)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen branching enzyme, GH-57-type, archaeal (EC 2.4.1.18)	Glycogen_metabolism	Carbohydrates	Polysaccharides
Predicted glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), Actinobacterial type	Glycogen_metabolism	Carbohydrates	Polysaccharides
glycogen debranching enzyme-related protein	Glycogen_metabolism	Carbohydrates	Polysaccharides
Putative glycogen debranching enzyme, archaeal type, TIGR01561	Glycogen_metabolism	Carbohydrates	Polysaccharides
Alpha-glucosidase, family 31 of glycosyl hydrolases, COG1501	Glycogen_metabolism	Carbohydrates	Polysaccharides
Membrane-type matrix metallopeptidase-1	MT1-MMP_Pericellular_Network	Regulation and Cell signaling	Proteolytic pathway
Matrix metallopeptidase-2	MT1-MMP_Pericellular_Network	Regulation and Cell signaling	Proteolytic pathway
CD44 antigen precursor	MT1-MMP_Pericellular_Network	Regulation and Cell signaling	Proteolytic pathway
Syndecan-1 precursor	MT1-MMP_Pericellular_Network	Regulation and Cell signaling	Proteolytic pathway
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	CBSS-272943.3.peg.1367	Clustering-based subsystems	
DNA topoisomerase I (EC 5.99.1.2)	CBSS-272943.3.peg.1367	Clustering-based subsystems	
Phage lysin	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage holin	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysin, N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysin, glycosyl hydrolase	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage-associated cell wall hydrolase	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysin (EC 3.2.1.17)	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage outer membrane lytic protein Rz	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage outer membrane lipoprotein Rz1	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage endolysin	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage spanin Rz	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage endopeptidase (EC 3.4.-.-) Rz	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage peptidoglycan hydrolase	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysin, L-alanyl-D-glutamate peptidase (EC 3.4.-.-)	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage holin, class II	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Truncated phage lysin, N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lysozyme (EC 3.2.1.17)	Phage_Lysis_Modules	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
CDP-glycerol: N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenyl glycerophosphotransferase	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
CDP-ribitol:poly(ribitol phosphate) ribitol phosphotransferase	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
D-alanyl transfer protein DltB	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
N-acetylmannosaminyltransferase (EC 2.4.1.187)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Poly(glycerol-phosphate) alpha-glucosyltransferase (EC 2.4.1.52)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Poly(glycerophosphate chain) D-alanine transfer protein DltD	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Putative glycosyl/glycerophosphate transferase in teichoic acid biosynthesis	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Putative major teichoic acid biosynthesis protein C	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Putative polyribitolphosphotransferase	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichoic acid biosynthesis protein X	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichoic acid translocation permease protein TagG	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Undecaprenyl-diphosphatase (EC 3.6.1.27)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
diglucosyldiacylglycerol synthase (LTA membrane anchor synthesis)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
ribitol-5-phosphate cytidylyltransferase (EC 2.7.7.40)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Minor teichoic acid biosynthesis protein GgaB	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipopolysaccharide cholinephosphotransferase LicD1 (EC 2.7.8.-)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Regulation of D-alanyl-lipoteichoic acid biosynthesis, DltR	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Regulation of D-alanyl-lipoteichoic acid biosynthesis, sensor histidine kinase	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipopolysaccharide cholinephosphotransferase LicD3 (EC 2.7.8.-)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Membrane protein CarB involved in the export of O-antigen and teichoic acid, Streptococci specific	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Putative CDP-glycerol:glycerophosphate glycerophosphotransferase (EC 2.7.8.-)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
COG1887: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Putative CDP-glycosylpolyol phosphate:glycosylpolyol glycosylpolyolphosphotransferase	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichoic acid biosynthesis protein	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
DltD protein	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Minor teichoic acid biosynthesis protein GgaA	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
galactosamine-containing minor teichoic acid biosynthesis protein	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Glycosyl transferase involved in teichoic acid biosynthesis	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Monogalactosyldiacylglycerol synthase (EC 2.4.1.46)	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Monogalactosyldiacylglycerol synthase precursor	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Teichoic acid glycosylation protein	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Hypohetical Teichoic Acid Biosynthesis Protein	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
SSU ribosomal protein S12p (S23e)	Virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)		
SSU ribosomal protein S7p (S5e)	Virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)		
Translation elongation factor G	Virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)		
Translation elongation factor Tu	Virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)		
FIG025093: Probable membrane protein	Virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)		
Choline ABC transporter permease protein	Choline_Transport	Membrane Transport	
Choline ABC transporter ATP-binding protein	Choline_Transport	Membrane Transport	
Choline-binding lipoprotein	Choline_Transport	Membrane Transport	
Choline-sulfatase (EC 3.1.6.6)	Choline_Transport	Membrane Transport	
Sodium-Choline Symporter	Choline_Transport	Membrane Transport	
Transcriptional regulator, TetR (AcrR) family [USSDB4A]	USS-DB-4	Clustering-based subsystems	
Efflux system membrane fusion protein [USSDB4B]	USS-DB-4	Clustering-based subsystems	
Multidrug efflux transporter [USSDB4C]	USS-DB-4	Clustering-based subsystems	
TRAP transporter solute receptor, unknown substrate 1	A_TRAP_transporter_and_a_hypothetical	Membrane Transport	TRAP transporters
TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1	A_TRAP_transporter_and_a_hypothetical	Membrane Transport	TRAP transporters
DUF1850 domain-containing protein	A_TRAP_transporter_and_a_hypothetical	Membrane Transport	TRAP transporters
General secretion pathway protein C	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
General secretion pathway protein D	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
General secretion pathway protein E	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
General secretion pathway protein F	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
General secretion pathway protein G	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
General secretion pathway protein H	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
General secretion pathway protein I	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
General secretion pathway protein J	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
Hpa2 protein	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
Type II secretion cytoplasmic ATP binding protein (PulE, ATPase)	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
Type II secretion outermembrane pore forming protein (PulD)	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
Type II secretory pathway, component PulF	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
Putative IpgF protein	CBSS-350701.3.peg.3277	Clustering-based subsystems	General secretion system/Phosphate-binding DING proteins cluster
Fatty acid desaturase occurring in virulence cluster	Mycobacterium_virulence_operon_involved_in_lipid_metabolism	Virulence	
tRNA dihydrouridine synthase B (EC 1.-.-.-)	Mycobacterium_virulence_operon_involved_in_lipid_metabolism	Virulence	
Capsular polysaccharide ABC transporter, permease protein KpsM	Capsular_Polysaccharide_(CPS)_of_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide ABC transporter, ATP-binding protein KpsT	Capsular_Polysaccharide_(CPS)_of_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system inner membrane protein KpsE	Capsular_Polysaccharide_(CPS)_of_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system periplasmic protein KpsD	Capsular_Polysaccharide_(CPS)_of_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system protein KpsF	Capsular_Polysaccharide_(CPS)_of_Campylobacter	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hydroxyaromatic non-oxidative decarboxylase protein B (EC 4.1.1.-)	Hydroxyaromatic_decarboxylase_family	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Hydroxyaromatic non-oxidative decarboxylase protein C (EC 4.1.1.-)	Hydroxyaromatic_decarboxylase_family	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Hydroxyaromatic non-oxidative decarboxylase protein D (EC 4.1.1.-)	Hydroxyaromatic_decarboxylase_family	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
RNA polymerase sporulation specific sigma factor SigE	CBSS-279010.5.peg.1697	Clustering-based subsystems	
RNA polymerase sporulation specific sigma factor SigG	CBSS-279010.5.peg.1697	Clustering-based subsystems	
FIG011856: hypothetical protein	CBSS-279010.5.peg.1697	Clustering-based subsystems	
Transcription accessory protein (S1 RNA-binding domain)	CBSS-243265.1.peg.198	Clustering-based subsystems	Translation
Transcription elongation factor GreB	CBSS-243265.1.peg.198	Clustering-based subsystems	Translation
Ribonuclease III (EC 3.1.26.3)	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
3'-to-5' exoribonuclease RNase R	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
3'-to-5' oligoribonuclease B, Bacillus type	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
Ribosome-binding factor A	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
Exoribonuclease II (EC 3.1.13.1)	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
Ribonuclease E (EC 3.1.26.12)	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
Ribonuclease E inhibitor RraA	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
Ribonuclease E inhibitor RraB	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
3'-to-5' oligoribonuclease (orn)	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
Ribonuclease I precursor (EC 3.1.27.6)	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
FIG146085: 3-to-5 oligoribonuclease A, Bacillus type	RNA_processing_and_degradation,_bacterial	RNA Metabolism	RNA processing and modification
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 8	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
TRAP-type C4-dicarboxylate transport system, large permease component	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
TRAP-type C4-dicarboxylate transport system, periplasmic component	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
TRAP-type uncharacterized transport system, fused permease component	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
Tricarboxylate transport membrane protein TctA	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
Putative tricarboxylic transport TctC	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
COG5591: Uncharacterized conserved protein	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
tricarboxylate transport protein TctB, putative	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
Tricarboxylate transport membrane protein TctB	CBSS-49338.1.peg.459	Clustering-based subsystems	Tricarboxylate transporter
Toluene-4-monooxygenase, subunit TmoA	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
Toluene-4-monooxygenase, subunit TmoB	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
Toluene-4-monooxygenase, subunit TmoC	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
Toluene-4-monooxygenase, subunit TmoD	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
Toluene-4-monooxygenase, subunit TmoE	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
Toluene-4-monooxygenase, subunit TmoF	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
Toluene-4-monooxygenase, subunit TmoA alpha	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
Toluene-4-monooxygenase, subunit TmoA beta	Toluene_4-monooxygenase_(T4MO)	Metabolism of Aromatic Compounds	
AA3-600 quinol oxidase subunit I	Terminal_AA3-600_quinol_oxidase	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit II	Terminal_AA3-600_quinol_oxidase	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IIII	Terminal_AA3-600_quinol_oxidase	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IV	Terminal_AA3-600_quinol_oxidase	Respiration	Electron accepting reactions
S-adenosylhomocysteine deaminase (EC 3.5.4.28)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
Methylthioadenosine deaminase	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
Adenosylhomocysteinase (EC 3.3.1.1)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
Inosylhomocysteinase (EC 3.3.1.-)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
S-adenosylmethionine synthetase (EC 2.5.1.6)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
5'-methylthioadenosine phosphorylase (EC 2.4.2.28)	S-Adenosylhomocysteine_and_S-Methylthioadenosine_metabolism	Experimental Subsystems	
Alcohol dehydrogenase (EC 1.1.1.1)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
NADH-dependent butanol dehydrogenase A (EC 1.1.1.-)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Electron transfer flavoprotein, alpha subunit	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Electron transfer flavoprotein, beta subunit	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Acetoacetate decarboxylase (EC 4.1.1.4)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
NADH-dependent butanol dehydrogenase B (EC 1.1.1.-)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
NADH-dependent butanol dehydrogenase (EC 1.1.1.-)	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Acetoacetate metabolism regulatory protein AtoC	Acetone_Butanol_Ethanol_Synthesis	Carbohydrates	Fermentation
Flavanone-3-hydroxylase (EC 1.14.13.21)	Biflavanoid_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Flavanone-3-hydroxylase (EC 1.14.11.9)	Biflavanoid_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Dihydroflavonol-4-reductase (EC 1.1.1.219)	Biflavanoid_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Quercetin 3-O-methyltransferase 1 (EC 2.1.1.76)	Biflavanoid_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Alpha-galactosidase (EC 3.2.1.22)	Melibiose_Utilization	Carbohydrates	Di- and oligosaccharides
Melibiose carrier protein, Na+/melibiose symporter	Melibiose_Utilization	Carbohydrates	Di- and oligosaccharides
Melibiose operon regulatory protein	Melibiose_Utilization	Carbohydrates	Di- and oligosaccharides
Ubiquinol-cytochrome C chaperone	CBSS-176299.3.peg.2475	Clustering-based subsystems	Ubiquinol-cytochrome C chaperone locus
Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate transporter	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol uptake operon antiterminator regulatory protein	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol uptake facilitator protein	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol kinase (EC 2.7.1.30)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol dehydrogenase (EC 1.1.1.6)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
GlpG protein (membrane protein of glp regulon)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Putative translation initiation inhibitor, yjgF family	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate regulon repressor, DeoR family	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Alpha-glycerophosphate oxidase (EC 1.1.3.21)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
NADH peroxidase (EC 1.11.1.1)	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
Probable glycerol transport protein	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	Sugar alcohols
vacuolating cytotoxin	Helicobacter_vacuolating_cytotoxin	Virulence, Disease and Defense	Toxins and superantigens
Integrase	Phage_integrases		
Phage integrase	Phage_integrases		
Phage integrase: site-specific recombinase	Phage_integrases		
Site-specific recombinase	Phage_integrases		
Phage integrase, site-specific serine recombinase	Phage_integrases		
Phage integrase, site-specific tyrosine recombinase	Phage_integrases		
Phage P4-like integrase	Phage_integrases		
Site-specific recombinase, phage integrase	Phage_integrases		
FIG006126: DNA helicase, restriction/modification system component YeeB	CBSS-316273.3.peg.2378	Clustering-based subsystems	
FIG045374: Type II restriction enzyme, methylase subunit YeeA	CBSS-316273.3.peg.2378	Clustering-based subsystems	
YeeC-like protein	CBSS-316273.3.peg.2378	Clustering-based subsystems	
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Cytochrome c-type protein NapC	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Cytochrome c-type protein NrfB precursor	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Cytochrome c552 precursor (EC 1.7.2.2)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Ferredoxin-type protein NapF (periplasmic nitrate reductase)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrate reductase cytochrome c550-type subunit	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrate/nitrite response regulator protein	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrate/nitrite sensor protein (EC 2.7.3.-)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
NrfC protein	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
NrfD protein	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Periplasmic nitrate reductase component NapD	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Polyferredoxin NapH (periplasmic nitrate reductase)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Respiratory nitrate reductase delta chain (EC 1.7.99.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrate/nitrite transporter	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Ferredoxin--nitrite reductase (EC 1.7.7.1)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrate ABC transporter, nitrate-binding protein	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Response regulator NasT	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Cytochrome c nitrite reductase, small subunit NrfH	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Periplasmic nitrate reductase component NapE	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrate ABC transporter, ATP-binding protein	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrate ABC transporter, permease protein	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrite transporter from formate/nitrite family	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Periplasmic nitrate reductase component NapL	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Nitrite transporter NirC	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly	Nitrate_and_nitrite_ammonification	Nitrogen Metabolism	
KH domain RNA binding protein YlqC	KH_domain_RNA_binding_protein_YlqC	Clustering-based subsystems	
SSU ribosomal protein S16p	KH_domain_RNA_binding_protein_YlqC	Clustering-based subsystems	
16S rRNA processing protein RimM	KH_domain_RNA_binding_protein_YlqC	Clustering-based subsystems	
DNA polymerase X family	CBSS-198094.1.peg.4426	Clustering-based subsystems	Recombination related cluster
Recombination inhibitory protein MutS2	CBSS-198094.1.peg.4426	Clustering-based subsystems	Recombination related cluster
Possible colicin V production protein	CBSS-198094.1.peg.4426	Clustering-based subsystems	Recombination related cluster
Ribonuclease HIII (EC 3.1.26.4)	CBSS-198094.1.peg.4426	Clustering-based subsystems	Recombination related cluster
Quinolinate synthetase (EC 2.5.1.72)	Mycobacterium_virulence_operon_possibly_involved_in_quinolinate_biosynthesis	Virulence	
L-aspartate oxidase (EC 1.4.3.16)	Mycobacterium_virulence_operon_possibly_involved_in_quinolinate_biosynthesis	Virulence	
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Mycobacterium_virulence_operon_possibly_involved_in_quinolinate_biosynthesis	Virulence	
FIG00740931: hypothetical protein	CBSS-89187.6.peg.2182:_a_Degradation_cluster	Clustering-based subsystems	A degradation cluster
Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)	CBSS-89187.6.peg.2182:_a_Degradation_cluster	Clustering-based subsystems	A degradation cluster
Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)	CBSS-89187.6.peg.2182:_a_Degradation_cluster	Clustering-based subsystems	A degradation cluster
4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	CBSS-89187.6.peg.2182:_a_Degradation_cluster	Clustering-based subsystems	A degradation cluster
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)	CBSS-89187.6.peg.2182:_a_Degradation_cluster	Clustering-based subsystems	A degradation cluster
3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)	CBSS-89187.6.peg.2182:_a_Degradation_cluster	Clustering-based subsystems	A degradation cluster
P-hydroxybenzoate hydroxylase (EC 1.14.13.2)	CBSS-89187.6.peg.2182:_a_Degradation_cluster	Clustering-based subsystems	A degradation cluster
Manganese superoxide dismutase (EC 1.15.1.1)	Protection_from_Reactive_Oxygen_Species	Stress Response	Oxidative stress
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	Protection_from_Reactive_Oxygen_Species	Stress Response	Oxidative stress
Catalase (EC 1.11.1.6)	Protection_from_Reactive_Oxygen_Species	Stress Response	Oxidative stress
Superoxide dismutase [Fe] (EC 1.15.1.1)	Protection_from_Reactive_Oxygen_Species	Stress Response	Oxidative stress
Peroxidase (EC 1.11.1.7)	Protection_from_Reactive_Oxygen_Species	Stress Response	Oxidative stress
Cytochrome c551 peroxidase (EC 1.11.1.5)	Protection_from_Reactive_Oxygen_Species	Stress Response	Oxidative stress
Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C)	CBSS-83333.1.peg.2748	Clustering-based subsystems	
Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C)	CBSS-83333.1.peg.2748	Clustering-based subsystems	
tRNA pseudouridine synthase C (EC 4.2.1.70)	CBSS-83333.1.peg.2748	Clustering-based subsystems	
Glucose ABC transport system, periplasmic sugar-binding protein	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
Glucose ABC transport system, inner membrane component 1	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-)	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
Glucose ABC transport system, inner membrane component 2	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
Glucokinase (EC 2.7.1.2)	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
DNA-binding response regulator GltR, controls specific porins for the entry of glucose	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
Glucose-selective porin OprB	Peripheral_Glucose_Catabolism_Pathways	Carbohydrates	Central carbohydrate metabolism
Sporulation killing factor A SkfA	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
Antimicrobial protein SkfB	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
Antimicrobial protein SkfC	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
Amino terminal CAAX family protease SkfD	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
ABC transporter SkfE	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
ABC transporter ATP-binding protein SkfF	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
Protein SkfG	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
Protein SkfH	Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster	Dormancy and Sporulation	
Regulatory protein AsnC	CBSS-262728.1.peg.1737	Clustering-based subsystems	
Aspartate--ammonia ligase (EC 6.3.1.1)	CBSS-262728.1.peg.1737	Clustering-based subsystems	
Cyanobacteria-specific RpoD-like sigma factor, type-12	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-13	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-14	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-6	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-7	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
RNA polymerase sigma factor RpoD	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-1	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-2	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-3	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-4	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-5	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-9	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Cyanobacteria-specific RpoD-like sigma factor, type-11	Transcription_factors_cyanobacterial_RpoD-like_sigma_factors	RNA Metabolism	Transcription
Isoflavone reductase homolog P3 (EC 1.3.1.-)	Apigenin_derivatives	Secondary Metabolism	Biosynthesis of phenylpropanoids
Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30)	Cyanophycin_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Cyanophycinase (EC 3.4.15.6)	Cyanophycin_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Cyanophycin_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Cyanophycin synthase II	Cyanophycin_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate--cysteine ligase (EC 6.3.2.2)	Cyanophycin_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Cyanophycinase (EC 3.4.15.6) dimer	Cyanophycin_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Cyanophycinase 2 (EC 3.4.15.6)	Cyanophycin_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	ABC transporters
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	ABC transporters
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	ABC transporters
Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	ABC transporters
Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	ABC transporters
Aromatic-ring-hydroxylating dioxygenase, beta subunit	CBSS-392499.4.peg.4257	Clustering-based subsystems	Hypothetical aromatic compound degradation cluster
Ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein (EC 1.14.12.18)	CBSS-392499.4.peg.4257	Clustering-based subsystems	Hypothetical aromatic compound degradation cluster
LysR-type transcriptional regulator NahR	CBSS-392499.4.peg.4257	Clustering-based subsystems	Hypothetical aromatic compound degradation cluster
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	CBSS-392499.4.peg.4257	Clustering-based subsystems	Hypothetical aromatic compound degradation cluster
TRAP-type C4-dicarboxylate transport system, periplasmic component	TRAP_Transporter_collection	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, small permease component	TRAP_Transporter_collection	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, large permease component	TRAP_Transporter_collection	Experimental Subsystems	
TrapT dctQ-M fusion permease, dicarboxylate transport	TRAP_Transporter_collection	Experimental Subsystems	
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Aconitate hydratase (EC 4.2.1.3)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Citrate synthase (si) (EC 2.3.3.1)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Enolase (EC 4.2.1.11)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
GDSL-like lipase/acylhydrolase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Glyoxalase family protein	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Malate dehydrogenase (EC 1.1.1.37)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Malate synthase G (EC 2.3.3.9)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Malyl-CoA lyase (EC 4.1.3.24)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Methylmalonyl-CoA mutase (EC 5.4.99.2)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Serine hydroxymethyltransferase (EC 2.1.2.1)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Glycerate kinase (EC 2.7.1.31)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Isocitrate lyase (EC 4.1.3.1)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
cytosolic long-chain acyl-CoA thioester hydrolase family protein	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
crotonyl-CoA reductase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Phosphoenolpyruvate carboxylase, archaeal (EC 4.1.1.31)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Malate synthase (EC 2.3.3.9)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Malate synthase-related protein	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Serine--pyruvate aminotransferase (EC 2.6.1.51)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
putative isobutyryl-CoA mutase, chain B	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
isobutyryl-CoA dehydrogenase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
polyhydroxyalkanoate synthesis repressor PhaR	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Phosphoglyceromutase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
low-specificity D-threonine aldolase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Citrate synthase (EC 2.3.3.1)	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
decarboxylase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
putative glycerate kinase	Serine-glyoxylate_cycle	Carbohydrates	One-carbon Metabolism
FIG001014_Response regulator of the LytR/AlgR family	Two-component_sensor_regulator_linked_to_Carbon_Starvation_Protein_A	Regulation and Cell signaling	
Autolysin sensor kinase (EC 2.7.3.-)	Two-component_sensor_regulator_linked_to_Carbon_Starvation_Protein_A	Regulation and Cell signaling	
Carbon starvation protein A	Two-component_sensor_regulator_linked_to_Carbon_Starvation_Protein_A	Regulation and Cell signaling	
Alginate biosynthesis protein Alg8	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Alginate biosynthesis protein AlgX	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Alginate biosynthesis transcriptional activator	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Alginate lyase precursor (EC 4.2.2.3)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
GDP-mannose 6-dehydrogenase (EC 1.1.1.132)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hexuronate transporter	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannose-6-phosphate isomerase (EC 5.3.1.8)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Phosphomannomutase (EC 5.4.2.8)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Poly(beta-D-mannuronate) C5 epimerase precursor (EC 5.1.3.-)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
RNA polymerase sigma-H factor AlgT	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
alginate biosynthesis protein AlgJ	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
alginate o-acetyltransferase AlgF	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
outer membrane protein AlgE	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
poly(beta-D-mannuronate) lyase (EC 4.2.2.3)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Acetoin(diacetyl) reductase	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Alginate lyase (EC 4.2.2.3)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Pectin degradation protein KdgF	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Acetoin (diacetyl) reductase (EC 1.1.1.5)	Alginate_metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Ribonuclease P protein component 1 (EC 3.1.26.5)	Ribonuclease_P_archaeal_and_eukaryal	RNA Metabolism	RNA processing and modification
Ribonuclease P protein component 2 (EC 3.1.26.5)	Ribonuclease_P_archaeal_and_eukaryal	RNA Metabolism	RNA processing and modification
Ribonuclease P protein component 4 (EC 3.1.26.5)	Ribonuclease_P_archaeal_and_eukaryal	RNA Metabolism	RNA processing and modification
Ribonuclease P protein component 3 (EC 3.1.26.5)	Ribonuclease_P_archaeal_and_eukaryal	RNA Metabolism	RNA processing and modification
Pyruvate:ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.1)	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Pyruvate:ferredoxin oxidoreductase, beta subunit (EC 1.2.7.1)	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Pyruvate:ferredoxin oxidoreductase, delta subunit (EC 1.2.7.1)	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Pyruvate:ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.1)	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Pyruvate:ferredoxin oxidoreductase, porE subunit (EC 1.2.7.1)	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Pyruvate:ferredoxin oxidoreductase, porF subunit (EC 1.2.7.1)	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Putative dihydropyrimidine dehydrogenase [NADP+], similar to dihydroorotate dehydrogenase	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Pyridine nucleotide-disulphide oxidoreductase family protein associated with PFOR	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
NADPH-dependent oxidoreductase with 4Fe-4S binding domain, in cluster with PFOR	Pyruvate:ferredoxin_oxidoreductase	Carbohydrates	Central carbohydrate metabolism
Beta-propeller domains of methanol dehydrogenase type	CBSS-205922.3.peg.630	Experimental Subsystems	
LemA family protein	CBSS-205922.3.peg.630	Experimental Subsystems	
FIG004694: Hypothetical protein	CBSS-205922.3.peg.630	Experimental Subsystems	
Chaperonin (heat shock protein 33)	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Collagen-binding adhesin	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Fibronectin-binding protein	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Fibronectin-binding protein 2	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Multiple sugar metabolism regulator	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Serum opacity factor	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Transcriptional regulator, RofA	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Negative transcriptional regulator	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Sortase	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
Signal peptidase I	Streptococcus_pyogenes_recombinatorial_zone	Virulence, Disease and Defense	Adhesion
FIG036183: Transcriptional regulator, XRE family	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG046480: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG035400: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG032362: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG031049: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG043360: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
Epoxide hydrolase (EC 3.3.2.9)	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG030803: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG069748: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
FIG064496: Hypothetical protein	CBSS-410289.13.peg.3174	Clustering-based subsystems	
Copper-containing nitrite reductase (EC 1.7.2.1)	Denitrification	Nitrogen Metabolism	
Nitric oxide reductase activation protein NorD	Denitrification	Nitrogen Metabolism	
Nitric oxide reductase activation protein NorQ	Denitrification	Nitrogen Metabolism	
Nitric-oxide reductase subunit B (EC 1.7.99.7)	Denitrification	Nitrogen Metabolism	
Nitric-oxide reductase subunit C (EC 1.7.99.7)	Denitrification	Nitrogen Metabolism	
Nitric oxide -responding transcriptional regulator NnrR (Crp/Fnr family)	Denitrification	Nitrogen Metabolism	
Nitric oxide reductase activation protein NorE	Denitrification	Nitrogen Metabolism	
Nitrite reductase accessory protein NirV	Denitrification	Nitrogen Metabolism	
Nitrous oxide reductase maturation periplasmic protein NosX	Denitrification	Nitrogen Metabolism	
Nitrous oxide reductase maturation protein NosD	Denitrification	Nitrogen Metabolism	
Nitrous oxide reductase maturation protein NosF (ATPase)	Denitrification	Nitrogen Metabolism	
Nitrous oxide reductase maturation protein NosR	Denitrification	Nitrogen Metabolism	
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Denitrification	Nitrogen Metabolism	
Nitrous oxide reductase maturation transmembrane protein NosY	Denitrification	Nitrogen Metabolism	
Nitrous-oxide reductase (EC 1.7.99.6)	Denitrification	Nitrogen Metabolism	
NnrS protein involved in response to NO	Denitrification	Nitrogen Metabolism	
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Denitrification	Nitrogen Metabolism	
Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)	Denitrification	Nitrogen Metabolism	
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	Denitrification	Nitrogen Metabolism	
Cytochrome cd1 nitrite reductase (EC:1.7.2.1)	Denitrification	Nitrogen Metabolism	
NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Denitrification	Nitrogen Metabolism	
Psp operon transcriptional activator	Phage_shock_protein_(psp)_operon	Stress Response	
Phage shock protein A	Phage_shock_protein_(psp)_operon	Stress Response	
Phage shock protein B	Phage_shock_protein_(psp)_operon	Stress Response	
Phage shock protein C	Phage_shock_protein_(psp)_operon	Stress Response	
Phage shock protein E	Phage_shock_protein_(psp)_operon	Stress Response	
Phage shock protein D	Phage_shock_protein_(psp)_operon	Stress Response	
Phage shock protein E precursor	Phage_shock_protein_(psp)_operon	Stress Response	
LysR-family transcriptional regulator clustered with PA0057	PA0057_cluster	Clustering-based subsystems	
Metallo-beta-lactamase superfamily protein PA0057	PA0057_cluster	Clustering-based subsystems	
Thioredoxin-like protein clustered with PA0057	PA0057_cluster	Clustering-based subsystems	
Dinucleotide-utilizing enzyme, Rv2032/acg (acr-coregulated gene)	Mycobacterium_virulence_operon_involved_with_a_dormancy_regulon	Virulence	
14 kDa antigen (16 kDa antigen) (HSP 16.3)	Mycobacterium_virulence_operon_involved_with_a_dormancy_regulon	Virulence	
Erythromycin esterase homolog	Mycobacterium_virulence_operon_involved_with_a_dormancy_regulon	Virulence	
1-phosphofructokinase (EC 2.7.1.56)	Mycobacterium_virulence_operon_involved_with_a_dormancy_regulon	Virulence	
FIG036825: Universal stress protein family	Mycobacterium_virulence_operon_involved_with_a_dormancy_regulon	Virulence	
Energy-conserving hydrogenase (ferredoxin), subunit A	Energy-conserving_hydrogenase_(ferredoxin)	Respiration	Electron donating reactions
Energy-conserving hydrogenase (ferredoxin), subunit B	Energy-conserving_hydrogenase_(ferredoxin)	Respiration	Electron donating reactions
Energy-conserving hydrogenase (ferredoxin), subunit C	Energy-conserving_hydrogenase_(ferredoxin)	Respiration	Electron donating reactions
Energy-conserving hydrogenase (ferredoxin), subunit D	Energy-conserving_hydrogenase_(ferredoxin)	Respiration	Electron donating reactions
Energy-conserving hydrogenase (ferredoxin), subunit E	Energy-conserving_hydrogenase_(ferredoxin)	Respiration	Electron donating reactions
Energy-conserving hydrogenase (ferredoxin), subunit F	Energy-conserving_hydrogenase_(ferredoxin)	Respiration	Electron donating reactions
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Experimental-PTPS	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	Experimental-PTPS	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	Experimental-PTPS	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	Experimental-PTPS	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	Experimental-PTPS	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Experimental-PTPS	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	Experimental-PTPS	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Experimental-PTPS	Experimental Subsystems	
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Experimental-PTPS	Experimental Subsystems	
COG1565: Uncharacterized conserved protein	Experimental-PTPS	Experimental Subsystems	
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	Experimental-PTPS	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	Experimental-PTPS	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	Experimental-PTPS	Experimental Subsystems	
Dihydroneopterin triphosphate epimerase	Experimental-PTPS	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	Experimental-PTPS	Experimental Subsystems	
Sepiapterin reductase (EC 1.1.1.153)	Experimental-PTPS	Experimental Subsystems	
6-pyruvoyl-tetrahydropterin synthase related protein	Experimental-PTPS	Experimental Subsystems	
PTPS-like type 4	Experimental-PTPS	Experimental Subsystems	
PTPS-V	Experimental-PTPS	Experimental Subsystems	
PTPS-VI	Experimental-PTPS	Experimental Subsystems	
Exopolysaccharide biosynthesis transcriptional activator EpsA	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Tyrosine-protein phosphatase CpsB (EC 3.1.3.48)	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Tyrosine-protein kinase transmembrane modulator EpsC	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Tyrosine-protein kinase EpsD (EC 2.7.10.2)	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide biosynthesis protein CpsM(V)	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Galactosyl transferase CpsE (EC 2.7.8.-)	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glycosyl transferase CpsG	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide repeating-unit polymerase CpsH	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Membrane protein CarB involved in the export of O-antigen and teichoic acid, Streptococci specific	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide biosynthesis protein CpsF	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis protein Cps4E	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide biosynthesis protein CpsH(V)	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide repeat unit transporter CpsL	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis protein CpsK(V)	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide biosynthesis glycosyl transferase CpsN	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide biosynthesis glycosyl transferase CpsJ	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide biosynthesis glycosyl transferase CpsO	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosythesis protein CpsI	Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative ski2-type helicase MJ1124	Archaeal_signature_proteins	Experimental Subsystems	
Archaea-specific Superfamily II helicase MJ1401	Archaeal_signature_proteins	Experimental Subsystems	
Small nuclear ribonucleoprotein F	Archaeal_signature_proteins	Experimental Subsystems	
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Transport_of_Molybdenum	Membrane Transport	
Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)	Transport_of_Molybdenum	Membrane Transport	
Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)	Transport_of_Molybdenum	Membrane Transport	
DNA-binding domain of ModE	Transport_of_Molybdenum	Membrane Transport	
Molybdate-binding domain of ModE	Transport_of_Molybdenum	Membrane Transport	
Molybdenum transport system protein ModD	Transport_of_Molybdenum	Membrane Transport	
Predicted molybdate-responsive regulator YvgK in bacilli	Transport_of_Molybdenum	Membrane Transport	
Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)	CBSS-314260.3.peg.2133	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	CBSS-314260.3.peg.2133	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)	CBSS-314260.3.peg.2133	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	CBSS-314260.3.peg.2133	Nucleosides and Nucleotides	Purines
FIG040666: hypothetical protein perhaps implicated in de Novo purine biosynthesis	CBSS-314260.3.peg.2133	Nucleosides and Nucleotides	Purines
Adenylosuccinate lyase (EC 4.3.2.2)	CBSS-314260.3.peg.2133	Nucleosides and Nucleotides	Purines
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Uncharacterized protein YtfM precursor	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
UPF0131 protein YtfP	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Uncharacterized protein YtfN	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, permease protein YtfT	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, permease protein YjfF	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Putative sugar transporter	Cluster_Ytf_and_putative_sugar_transporter	Clustering-based subsystems	Carbohydrates
Adenylate cyclase (EC 4.6.1.1)	CBSS-222523.1.peg.1311	Clustering-based subsystems	Nucleotidyl-phosphate metabolic cluster
NAD kinase (EC 2.7.1.23)	CBSS-222523.1.peg.1311	Clustering-based subsystems	Nucleotidyl-phosphate metabolic cluster
GTP pyrophosphokinase (EC 2.7.6.5)	CBSS-222523.1.peg.1311	Clustering-based subsystems	Nucleotidyl-phosphate metabolic cluster
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type	CBSS-222523.1.peg.1311	Clustering-based subsystems	Nucleotidyl-phosphate metabolic cluster
YjbH-like, GTP pyrophosphokinase domain	CBSS-222523.1.peg.1311	Clustering-based subsystems	Nucleotidyl-phosphate metabolic cluster
GTP pyrophosphokinase	CBSS-222523.1.peg.1311	Clustering-based subsystems	Nucleotidyl-phosphate metabolic cluster
putative GTP pyrophosphokinase	CBSS-222523.1.peg.1311	Clustering-based subsystems	Nucleotidyl-phosphate metabolic cluster
Lipid A acylation protein PagP, palmitoyltransferase	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Sensor protein PhoQ (EC 2.7.13.3)	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Transcriptional regulatory protein PhoP	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Transcriptional regulatory protein basR/pmrA	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Sensor protein basS/pmrB (EC 2.7.3.-)	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Phosphoethanolamine transferase EptA specific for the 1 phosphate group of core-lipid A	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Phosphoethanolamine transferase specific for the outer Kdo residue of lipopolysaccharide	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid A 3-O-deacylase	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO	Lipid_A_modifications	Cell Wall and Capsule	Gram-Negative cell wall components
Decorin binding protein B	Decorin_binding_proteins_of_Borrelia	Virulence, Disease and Defense	Adhesion
Decorin binding protein A	Decorin_binding_proteins_of_Borrelia	Virulence, Disease and Defense	Adhesion
TP53-induced glycolysis and apoptosis regulator	CR_clusters_Euk_4	Experimental Subsystems	
Fibroblast growth factor-23 precursor	CR_clusters_Euk_4	Experimental Subsystems	
Fibroblast growth factor 4 precursor	CR_clusters_Euk_4	Experimental Subsystems	
G1/S-specific cyclin-D2	CR_clusters_Euk_4	Experimental Subsystems	
Dual-specificity tyrosine-phosphorylation regulated kinase 1A (EC 2.7.1.-)	CR_clusters_Euk_4	Experimental Subsystems	
RAD51-associated protein 1	CR_clusters_Euk_4	Experimental Subsystems	
A kinase (PRKA) anchor protein 3	CR_clusters_Euk_4	Experimental Subsystems	
Transcriptional regulator, RofA	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
Transmembrane histidine kinase CsrS	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
Response regulator CsrR	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
Multiple sugar metabolism regulator	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
RofA-like transcriptional regulator	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
Proteinase maturation protein (RopA)	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
RopB	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
M protein trans-acting positive regulator (Mga)	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
Transcriptional regulator, RofA-like Protein (RALP)	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
Negative transcriptional regulator	Streptococcus_pyogenes_virulence_regulators	Regulation and Cell signaling	Regulation of virulence
Phage protein inside capsid A	Phage_virion_particles_involved_in_DNA_ejection	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage protein inside capsid B	Phage_virion_particles_involved_in_DNA_ejection	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage protein inside capsid C	Phage_virion_particles_involved_in_DNA_ejection	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage protein inside capsid D	Phage_virion_particles_involved_in_DNA_ejection	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	lux_LCFA_EM	Experimental Subsystems	
Isochorismatase (EC 3.3.2.1)	lux_LCFA_EM	Experimental Subsystems	
putative cytochrome P450 hydroxylase	lux_LCFA_EM	Experimental Subsystems	
Cytolethal distending toxin subunit A	Cytolethal_distending_toxin_of_Campylobacter_jejuni	Virulence, Disease and Defense	Toxins and superantigens
Cytolethal distending toxin subunit B	Cytolethal_distending_toxin_of_Campylobacter_jejuni	Virulence, Disease and Defense	Toxins and superantigens
Cytolethal distending toxin subunit C	Cytolethal_distending_toxin_of_Campylobacter_jejuni	Virulence, Disease and Defense	Toxins and superantigens
Phenolic acid decarboxylase (EC 4.1.1.-)	CBSS-1352.1.peg.856	Clustering-based subsystems	
Negative regulator of phenolic acid metabolism PadR	CBSS-1352.1.peg.856	Clustering-based subsystems	
Transcriptional regulator, PadR family	CBSS-1352.1.peg.856	Clustering-based subsystems	
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit I	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit II	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IIII	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IV	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Transport ATP-binding protein CydC	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Transport ATP-binding protein CydD	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
putative Cytochrome bd2, subunit I	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
putative Cytochrome bd2, subunit II	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Transport ATP-binding protein CydCD	Terminal_cytochrome_oxidases	Respiration	Electron accepting reactions
Phage major capsid protein	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Single-stranded DNA-binding protein	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage protein	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage portal protein	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage lysin	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage antirepressor protein	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage terminase small subunit	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage terminase large subunit	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage head completion-stabilization protein	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage endopeptidase	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Holin	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage holin	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
HNH homing endonuclease	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Single-stranded DNA-binding protein (prophage associated)	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage terminase large subunit, PBSX family	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage lysin, L-alanyl-D-glutamate peptidase (EC 3.4.-.-)	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Single-stranded DNA-binding protein, phage associated	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage lysin, N-acetylmuramoyl-L-alanine amidase	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage lysin, 1,4-beta-N-acetylmuramidase	Phage_experimental	Experimental Subsystems	Phages, Prophages, Transposable elements
Iron-sulfur cluster assembly protein SufB	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Integrase [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
CI-like repressor [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Cro-like repressor [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Antirepressor [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PVL orf39 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf16 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf19 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf 20 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAB1742c homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
DNA helicase [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf24 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf22 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf23 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PVL orf50 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PVL orf51 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PVL orf52 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAB1734c homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Putative major teichoic acid biosynthesis protein C	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Excisionase [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0849 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf10 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf12 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0860 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0877 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0880 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Integrase regulator RinB [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Integrase regulator RinA [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, small subunit [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage terminase, large subunit [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf31 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf32 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf33 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage head protein [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf35 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf36 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf37 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf38 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf39 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf40 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf41 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Tape measure protein [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
phi 11 orf43 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf55 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf42 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf58 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SLT orf99 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Autolysin [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Tail fiber protein [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf63 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Holin [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Lytic enzyme, amidase [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0876 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SLT orf81b homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0852 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf3 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, PV83 orf4 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf17 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Ssb protein [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
DNA binding protein [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Hypothetical protein, phi-ETA orf33 homolog [SA bacteriophages 11, Mu50B]	Staphylococcal_phi-Mu50B-like_prophages	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Fumarylacetoacetase (EC 3.7.1.2)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Fumarylacetoacetate hydrolase family protein	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Gentisate 1,2-dioxygenase (EC 1.13.11.4)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Maleate cis-trans isomerase (EC 5.2.1.1)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Maleylacetoacetate isomerase (EC 5.2.1.2)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxybenzoate transporter	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Putative n-hydroxybenzoate hydroxylase	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Salicylate hydroxylase (EC 1.14.13.1)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
AreA (Esterase for aryl ester catabolic pathway) (EC 3.1.1.-)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
AreB (Aryl-alcohol dehydrogenase) (EC 1.1.1.90)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
putative 4-hydroxybenzoyl-CoA thioesterase	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
putative facilitator of salicylate uptake	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
regulator protein,AreR	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
regulator protein,SalR	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
salicylate esterase	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.5)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Fumarylacetoacetate (FAA) hydrolase (EC 4.1.1.68)	Salicylate_and_gentisate_catabolism	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
DNA repair and recombination protein RadA	DNA_recombination,_archaeal	DNA Metabolism	DNA recombination
DNA repair and recombination protein RadB	DNA_recombination,_archaeal	DNA Metabolism	DNA recombination
Helicase PriA essential for oriC/DnaA-independent DNA replication	slr0575	Experimental Subsystems	
Acetylglutamate kinase (EC 2.7.2.8)	slr0575	Experimental Subsystems	
Cyanobacterial protein slr0575	slr0575	Experimental Subsystems	
Single-stranded DNA-binding protein	slr0575	Experimental Subsystems	
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	slr0575	Experimental Subsystems	
Fructokinase (EC 2.7.1.4)	slr0575	Experimental Subsystems	
Photosystem II protein Psb27	slr0575	Experimental Subsystems	
Prolyl-tRNA synthetase (EC 6.1.1.15)	slr0575	Experimental Subsystems	
Aliphatic amidase amiE (EC 3.5.1.4)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Formamidase amiF (EC 3.5.1.49)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Arginase (EC 3.5.3.1)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Urease beta subunit (EC 3.5.1.5) / Urease gamma subunit (EC 3.5.1.5)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
L-asparaginase (EC 3.5.1.1)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Gamma-glutamyltranspeptidase (EC 2.3.2.2)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.-); Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.-); Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.-)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.-); Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.-)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Aminodeoxychorismate lyase (EC 4.1.3.38)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Glutamine synthetase type I (EC 6.3.1.2)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Para-aminobenzoate synthase, amidotransferase component like (EC 6.3.5.8)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Glutaminyl-tRNA synthetase (EC 6.1.1.18)	Ammonium_metabolism_H._pylori	Experimental Subsystems	
Phosphoserine phosphatase (EC 3.1.3.3)	CBSS-336982.3.peg.3874	Clustering-based subsystems	
Septum site-determining protein MinD	CBSS-336982.3.peg.3874	Clustering-based subsystems	
Flp pilus assembly protein, ATPase CpaF	CBSS-336982.3.peg.3874	Clustering-based subsystems	
FIG016317: Probable conserved transmembrane protein	CBSS-336982.3.peg.3874	Clustering-based subsystems	
FIG054221: Possible conserved alanine rich membrane protein	CBSS-336982.3.peg.3874	Clustering-based subsystems	
FIG043778: hypothetical protein	CBSS-336982.3.peg.3874	Clustering-based subsystems	
Glycerol uptake facilitator protein	Osmoregulation	Stress Response	Osmotic stress
Aquaporin Z	Osmoregulation	Stress Response	Osmotic stress
Outer membrane protein A precursor	Osmoregulation	Stress Response	Osmotic stress
Osmotically inducible protein OsmY	Osmoregulation	Stress Response	Osmotic stress
Propanediol diffusion facilitator	Osmoregulation	Stress Response	Osmotic stress
Hexokinase-2 (EC 2.7.1.1)	CR_clusters_Euk_5_hexokinase2	Experimental Subsystems	
Adenine-specific methyltransferase (EC 2.1.1.72)	CBSS-257314.1.peg.752	Clustering-based subsystems	
Acetate kinase (EC 2.7.2.1)	CBSS-257314.1.peg.752	Clustering-based subsystems	
Thiol peroxidase, Tpx-type (EC 1.11.1.15)	CBSS-257314.1.peg.752	Clustering-based subsystems	
Putative lipase in cluster with Phosphatidate cytidylyltransferase	CBSS-316407.3.peg.1371	Clustering-based subsystems	Hypothetical lipase related to Phosphatidate metabolism
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	CBSS-316407.3.peg.1371	Clustering-based subsystems	Hypothetical lipase related to Phosphatidate metabolism
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	CBSS-316407.3.peg.1371	Clustering-based subsystems	Hypothetical lipase related to Phosphatidate metabolism
Ser/Thr and Tyr protein phosphatase (dual specificity)	CBSS-316407.3.peg.1371	Clustering-based subsystems	Hypothetical lipase related to Phosphatidate metabolism
Iron(III) dicitrate transport protein FecA	Iron(III)_dicitrate_transport_system_Fec	Iron acquisition and metabolism	
Iron(III) dicitrate transmembrane sensor protein FecR	Iron(III)_dicitrate_transport_system_Fec	Iron acquisition and metabolism	
Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1)	Iron(III)_dicitrate_transport_system_Fec	Iron acquisition and metabolism	
Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)	Iron(III)_dicitrate_transport_system_Fec	Iron acquisition and metabolism	
RNA polymerase sigma factor FecI	Iron(III)_dicitrate_transport_system_Fec	Iron acquisition and metabolism	
Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)	Iron(III)_dicitrate_transport_system_Fec	Iron acquisition and metabolism	
Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1)	Iron(III)_dicitrate_transport_system_Fec	Iron acquisition and metabolism	
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	Dabb	Experimental Subsystems	
Dabb	Dabb	Experimental Subsystems	
Phosphoglucomutase (EC 5.4.2.2)	SeqA_and_Co-occurring_Genes	Clustering-based subsystems	Chromosome Replication
SeqA protein, negative modulator of initiation of replication	SeqA_and_Co-occurring_Genes	Clustering-based subsystems	Chromosome Replication
Esterase ybfF (EC 3.1.-.-)	SeqA_and_Co-occurring_Genes	Clustering-based subsystems	Chromosome Replication
Uncharacterized protein ybfE	SeqA_and_Co-occurring_Genes	Clustering-based subsystems	Chromosome Replication
Outer membrane protein W precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein A precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein H precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Two-component system response regulator OmpR	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Osmolarity sensory histidine kinase EnvZ	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein X precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Nucleoside-specific channel-forming protein Tsx precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein OmpU	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein OmpV	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein OmpT	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein OmpK	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein C precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Attachment invasion locus protein precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Protease VII (Omptin) precursor (EC 3.4.23.49)	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein N precursor	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Integral membrane protein YfiB	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein Lom	Major_Outer_Membrane_Proteins	Cell Wall and Capsule	Gram-Negative cell wall components
FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type	CBSS-138119.3.peg.2719	Clustering-based subsystems	
Translation initiation factor 2	CBSS-138119.3.peg.2719	Clustering-based subsystems	
tRNA pseudouridine synthase B (EC 4.2.1.70)	CBSS-138119.3.peg.2719	Clustering-based subsystems	
Ribosome-binding factor A	CBSS-138119.3.peg.2719	Clustering-based subsystems	
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoA	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoB	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoC	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoD	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoH	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoI	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoJ	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoJ2	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoK	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoL	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoM	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoN	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoO	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoF	Coenzyme_F420-H2_dehydrogenase_(methanophenazine)	Respiration	Electron donating reactions
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Terminal_cytochrome_O_ubiquinol_oxidase	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Terminal_cytochrome_O_ubiquinol_oxidase	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Terminal_cytochrome_O_ubiquinol_oxidase	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Terminal_cytochrome_O_ubiquinol_oxidase	Respiration	Electron accepting reactions
FIG002261: Cytochrome c family protein	A_cytochrome_c_family_cluster_of_two_genes	Clustering-based subsystems	Cytochrome biogenesis
FIG135464: Cytochrome c4	A_cytochrome_c_family_cluster_of_two_genes	Clustering-based subsystems	Cytochrome biogenesis
Sporulation regulatory protein WhiB	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
Glycosyl transferase, family 2	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
FIG083739: Putative secreted protein	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
Lactyl (2) diphospho-(5')guanosine:7,8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
Sporulation regulatory protein WhiD	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
WhiB-type transcription regulator	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
WhiB-like transcription regulator	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
Signal transduction histidine kinase, subgroup 2	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
WhiB-family transcriptional regulator	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
ATP-dependent DNA helicase UvrD/PcrA, actinomycete paralog	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
Ferredoxin--sulfite reductase, actinobacterial type (EC 1.8.7.1)	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
WhiB-type transcriptional regulator	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
WhiB-like transcriptional regulator	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL	WhiB_and_WhiB-type_regulatory_proteins_	Regulation and Cell signaling	
hypothetical protein PA3071	CBSS-345072.3.peg.1318	Clustering-based subsystems	
BatA (Bacteroides aerotolerance operon)	CBSS-345072.3.peg.1318	Clustering-based subsystems	
MoxR-like ATPase in aerotolerance operon	CBSS-345072.3.peg.1318	Clustering-based subsystems	
TPR domain protein in aerotolerance operon	CBSS-345072.3.peg.1318	Clustering-based subsystems	
BatD	CBSS-345072.3.peg.1318	Clustering-based subsystems	
BatB	CBSS-345072.3.peg.1318	Clustering-based subsystems	
BatC	CBSS-345072.3.peg.1318	Clustering-based subsystems	
BatE	CBSS-345072.3.peg.1318	Clustering-based subsystems	
ATP-dependent Clp protease adaptor protein ClpS Cyano2	ClpS_cluster_with_hypothetical_protein_in_Cyanos	Clustering-based subsystems	
FIG113347: hypothetical protein	ClpS_cluster_with_hypothetical_protein_in_Cyanos	Clustering-based subsystems	
Carbon monoxide-induced hydrogenase membrane protein CooM	Carbon_monoxide_induced_hydrogenase	Respiration	
Carbon monoxide-induced hydrogenase proton translocating subunit CooK	Carbon_monoxide_induced_hydrogenase	Respiration	
Carbon monoxide-induced hydrogenase small subunit CooL	Carbon_monoxide_induced_hydrogenase	Respiration	
Carbon monoxide-induced hydrogenase iron-sulfur protein CooX	Carbon_monoxide_induced_hydrogenase	Respiration	
Carbon monoxide-induced hydrogenase NuoC-like protein CooU	Carbon_monoxide_induced_hydrogenase	Respiration	
Carbon monoxide-induced hydrogenase large subunit CooH	Carbon_monoxide_induced_hydrogenase	Respiration	
Carbon monoxide-responsive transcriptional activator CooA	Carbon_monoxide_induced_hydrogenase	Respiration	
Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase iron-sulfur protein CooF (EC 1.2.99.2)	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase accessory protein CooC (nickel insertion)	Carbon_monoxide_induced_hydrogenase	Respiration	
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	Carbon_monoxide_induced_hydrogenase	Respiration	
CooT	Carbon_monoxide_induced_hydrogenase	Respiration	
CooJ	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase/acetyl-CoA synthase, acetyl-CoA synthase subunit (EC 2.3.1.169)	Carbon_monoxide_induced_hydrogenase	Respiration	
Acetyl-CoA synthase corrinoid iron-sulfur protein, large subunit	Carbon_monoxide_induced_hydrogenase	Respiration	
Acetyl-CoA synthase corrinoid iron-sulfur protein, small subunit	Carbon_monoxide_induced_hydrogenase	Respiration	
5-methyltetrahydrofolate:corrinoid iron-sulfur protein methyltransferase	Carbon_monoxide_induced_hydrogenase	Respiration	
Similar to carbon monoxide dehydrogenase CooS subunit	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase/acetyl-CoA synthase, CO dehydrogenase subunit (EC 1.2.99.2)	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase/acetyl-CoA synthase subunit alpha, CO dehydrogenase subcomplex (EC 1.2.99.2)	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase/acetyl-CoA synthase subunit beta, acetyl-CoA synthase (EC 2.3.1.169)	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase/acetyl-CoA synthase subunit gamma, corrinoid iron-sulfur subcomplex large subunit	Carbon_monoxide_induced_hydrogenase	Respiration	
5-tetrahydromethanopterin:corrinoid iron-sulfur protein methyltransferase	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase/acetyl-CoA synthase subunit delta, corrinoid iron-sulfur subcomplex small subunit	Carbon_monoxide_induced_hydrogenase	Respiration	
CO dehydrogenase/acetyl-CoA synthase subunit epsilon, CO dehydrogenase subcomplex (EC 1.2.99.2)	Carbon_monoxide_induced_hydrogenase	Respiration	
Iron-sulfur protein clustered with CO dehydrogenase/acetyl-CoA synthase	Carbon_monoxide_induced_hydrogenase	Respiration	
Similar to carbon monoxide dehydrogenase corrinoid/iron-sulfur protein	Carbon_monoxide_induced_hydrogenase	Respiration	
Nicotine adenine dinucleotide glycohydrolase (NADGH) (EC 3.2.2.5)	SLO-NADGH_Locus	Virulence, Disease and Defense	Toxins and superantigens
Streptolysin O	SLO-NADGH_Locus	Virulence, Disease and Defense	Toxins and superantigens
Alkyl hydroperoxide reductase subunit C-like protein	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Thiol peroxidase, Bcp-type (EC 1.11.1.15)	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Thioredoxin reductase (EC 1.8.1.9)	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Alkylhydroperoxidase protein D	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Hydrogen peroxide-inducible genes activator	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Thiol peroxidase, Tpx-type (EC 1.11.1.15)	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)	Thioredoxin-disulfide_reductase	Sulfur Metabolism	
Integration host factor alpha subunit	DNA_structural_proteins,_bacterial	DNA Metabolism	
Integration host factor beta subunit	DNA_structural_proteins,_bacterial	DNA Metabolism	
DNA-binding protein HU	DNA_structural_proteins,_bacterial	DNA Metabolism	
DNA-binding protein HU-beta	DNA_structural_proteins,_bacterial	DNA Metabolism	
DNA-binding protein HU-alpha	DNA_structural_proteins,_bacterial	DNA Metabolism	
DNA-binding protein HBsu	DNA_structural_proteins,_bacterial	DNA Metabolism	
DNA-binding protein Fis	DNA_structural_proteins,_bacterial	DNA Metabolism	
Chromosome partition protein MukB	DNA_structural_proteins,_bacterial	DNA Metabolism	
Chromosome partition protein MukE	DNA_structural_proteins,_bacterial	DNA Metabolism	
Chromosome partition protein MukF	DNA_structural_proteins,_bacterial	DNA Metabolism	
FUPA26 P-type ATPase	Family_26_FUPA26_P-type_ATPase		
Porphobilinogen synthase (EC 4.2.1.24)	Family_26_FUPA26_P-type_ATPase		
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)	Family_26_FUPA26_P-type_ATPase		
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Family_26_FUPA26_P-type_ATPase		
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Family_26_FUPA26_P-type_ATPase		
Oxidoreductase, aldo/keto reductase family	CBSS-364106.7.peg.3211	Clustering-based subsystems	
2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40)	CBSS-364106.7.peg.3211	Clustering-based subsystems	
Lysophospholipid transporter LplT	CBSS-364106.7.peg.3211	Clustering-based subsystems	
Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20)	CBSS-364106.7.peg.3211	Clustering-based subsystems	
DNA mismatch repair endonuclease MutH	CBSS-364106.7.peg.3211	Clustering-based subsystems	
FIG003462: membrane protein	CBSS-364106.7.peg.3211	Clustering-based subsystems	
Hypothetical lipoprotein ygdR precursor	CBSS-364106.7.peg.3211	Clustering-based subsystems	
Cytolysin and hemolysin, HlyA, Pore-forming toxin	Cytolysin_and_Lipase_operon_in_Vibrio	Virulence, Disease and Defense	Invasion and intracellular resistance
Methyl-accepting chemotaxis protein, hemolysin secretion protein HylB	Cytolysin_and_Lipase_operon_in_Vibrio	Virulence, Disease and Defense	Invasion and intracellular resistance
Lipase precursor (EC 3.1.1.3)	Cytolysin_and_Lipase_operon_in_Vibrio	Virulence, Disease and Defense	Invasion and intracellular resistance
Lipase activator protein, Lipase-specific foldase	Cytolysin_and_Lipase_operon_in_Vibrio	Virulence, Disease and Defense	Invasion and intracellular resistance
Metalloprotease, putative zinc-binding domain	Cytolysin_and_Lipase_operon_in_Vibrio	Virulence, Disease and Defense	Invasion and intracellular resistance
Adhesin of unknown specificity SdrC	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Adhesin of unknown specificity SdrD	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Adhesin of unknown specificity SdrE, similar to bone sialoprotein-binding protein Bbp	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Antiadhesin Pls, binding to squamous nasal epithelial cells	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Bifunctional autolysin Atl	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Clumping factor ClfA, fibrinogen-binding protein	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Clumping factor ClfB, fibrinogen binding protein	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Elastin binding protein EbpS	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Extracellular ECM and plasma binding protein Emp	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Extracellular adherence protein of broad specificity Eap/Map	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Extracellular fibrinogen-binding protein Efb	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Fibronectin binding protein FnbA	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Fibronectin binding protein FnbB	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Hypothetical protein, similarity with fibrinogen-binding protein Efb	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Hypothetical protein, similarity with von Willebrand factor-binding VWbp	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Predicted cell-wall-anchored protein SasA (LPXTG motif)	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Predicted cell-wall-anchored protein SasC (LPXTG motif)	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Predicted cell-wall-anchored protein SasD (LPXAG motif)	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Predicted cell-wall-anchored protein SasF (LPXAG motif)	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Protein A, von Willebrand factor binding protein Spa	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Secreted von Willebrand factor-binding protein VWbp	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Staphylocoagulase	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Virulence-associated cell-wall-anchored protein SasG (LPXTG motif), binding to squamous nasal epithelial cells	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Virulence-associated cell-wall-anchored protein SasH (LPXTG motif)	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Collagen binding protein Cna	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Predicted cell-wall-anchored protein SasK (LPXTG motif)	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
Accumulation-associated protein AAP	Adhesins_in_Staphylococcus	Virulence, Disease and Defense	Adhesion
TRAP transporter solute receptor, unknown substrate 4	TRAP_Transporter_unknown_substrate_4	Experimental Subsystems	
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4	TRAP_Transporter_unknown_substrate_4	Experimental Subsystems	
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4	TRAP_Transporter_unknown_substrate_4	Experimental Subsystems	
Streptodornase B	Gram-Positive_Extracellular_Nucleases	Virulence, Disease and Defense	Invasion and intracellular resistance
Streptococcal extracellular nuclease 2	Gram-Positive_Extracellular_Nucleases	Virulence, Disease and Defense	Invasion and intracellular resistance
Streptococcal extracellular nuclease 3	Gram-Positive_Extracellular_Nucleases	Virulence, Disease and Defense	Invasion and intracellular resistance
DNA-entry nuclease (Competence-specific nuclease) (EC 3.1.30.-)	Gram-Positive_Extracellular_Nucleases	Virulence, Disease and Defense	Invasion and intracellular resistance
Streptococcal extracellular nuclease 4	Gram-Positive_Extracellular_Nucleases	Virulence, Disease and Defense	Invasion and intracellular resistance
Streptodornase D	Gram-Positive_Extracellular_Nucleases	Virulence, Disease and Defense	Invasion and intracellular resistance
Cell division protein BolA	CBSS-339671.5.peg.589	Clustering-based subsystems	
Hypothetical lipoprotein YajG precursor	CBSS-339671.5.peg.589	Clustering-based subsystems	
Predicted iron-dependent peroxidase, Dyp-type family	Conserved_cluster_around_acetyltransferase_YpeA_in_Enterobacteria	Clustering-based subsystems	
Predicted outer membrane lipoprotein YfeY	Conserved_cluster_around_acetyltransferase_YpeA_in_Enterobacteria	Clustering-based subsystems	
Inner membrane protein YfeZ	Conserved_cluster_around_acetyltransferase_YpeA_in_Enterobacteria	Clustering-based subsystems	
Acetyltransferase YpeA	Conserved_cluster_around_acetyltransferase_YpeA_in_Enterobacteria	Clustering-based subsystems	
MotA/TolQ/ExbB proton channel family protein, probably associated with flagella	CBSS-323098.3.peg.2823	Clustering-based subsystems	Flagella protein?
Flagellar motor rotation protein MotB	CBSS-323098.3.peg.2823	Clustering-based subsystems	Flagella protein?
Inhibitor of vertebrate lysozyme precursor	Lysozyme_inhibitors	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Membrane-bound lysozyme inhibitor of c-type lysozyme	Lysozyme_inhibitors	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Per-activated serine protease autotransporter enterotoxin EspC	Lysozyme_inhibitors	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Periplasmic lysozyme inhibitor of c-type lysozyme	Lysozyme_inhibitors	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Biotin carboxyl carrier protein of oxaloacetate decarboxylase	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Biotin carboxyl carrier protein	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Methylmalonyl-CoA decarboxylase, beta chain (EC 4.1.1.41)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Glutaconyl-CoA decarboxylase alpha chain (EC 4.1.1.70)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Glutaconyl-CoA decarboxylase beta chain (EC 4.1.1.70)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Glutaconyl-CoA decarboxylase delta chain (EC 4.1.1.70)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Biotin carboxyl carrier protein of glutaconyl-CoA decarboxylase	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Methylmalonyl-CoA decarboxylase, alpha chain (EC 4.1.1.41)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Membrane protein associated with methylmalonyl-CoA decarboxylase	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Methylmalonyl-CoA:Pyruvate transcarboxylase 12S subunit (EC 2.1.3.1)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Methylmalonyl-CoA:Pyruvate transcarboxylase 5S subunit (EC 2.1.3.1)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Biotin carboxyl carrier protein of methylmalonyl-CoA:Pyruvate transcarboxylase	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Pyruvate:Oxaloacetate transcarboxylase domain protein	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Membrane protein associated with oxaloacetate decarboxylase	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Methylmalonyl-CoA decarboxylase, gamma chain (EC 4.1.1.41)	Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Respiration	Sodium Ion-Coupled Energetics
Enoyl-CoA hydratase (EC 4.2.1.17)	Butyrate_metabolism_cluster	Clustering-based subsystems	
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Butyrate_metabolism_cluster	Clustering-based subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Butyrate_metabolism_cluster	Clustering-based subsystems	
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)	ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)	Membrane Transport	ABC transporters
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)	ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)	Membrane Transport	ABC transporters
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)	ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)	Membrane Transport	ABC transporters
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)	ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)	Membrane Transport	ABC transporters
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)	ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)	Membrane Transport	ABC transporters
High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1)	ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)	Membrane Transport	ABC transporters
2-hydroxychromene-2-carboxylate isomerase	Naphtalene_and_antracene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Dihydrodiol dehydrogenase (EC 1.3.1.56)	Naphtalene_and_antracene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
1,2-dihydroxynaphthalene dioxygenase	Naphtalene_and_antracene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-)	Naphtalene_and_antracene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Salicylaldehyde dehydrogenase (EC 1.2.1.65)	Naphtalene_and_antracene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Naphthalene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component (EC 1.18.1.3)	Naphtalene_and_antracene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
naphthalene dioxygenase ferredoxin	Naphtalene_and_antracene_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
tRNA 5-methylaminomethyl-2-thiouridine synthase TusA	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
tRNA 5-methylaminomethyl-2-thiouridine synthase TusC	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
tRNA 5-methylaminomethyl-2-thiouridine synthase TusD	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
GTPase and tRNA-U34 5-formylation enzyme TrmE	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
5-methylaminomethyl-2-thiouridine-forming enzyme mnmC	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7)	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	mnm5U34_biosynthesis_bacteria	RNA Metabolism	RNA processing and modification
DedA family inner membrane protein YqjA	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Uncharacterized protein YqjB	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Periplasmic protein YqjC	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Uncharacterized membrane protein YqjD	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Inner membrane protein YqjE	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Inner membrane protein YqjK	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Inner membrane protein YqjF	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Glutathione S-transferase, omega (EC 2.5.1.18)	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
LysR-family transcriptional regulator YhaJ	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Pirin-like protein YhaK	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Uncharacterized protein YhaL	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Inner membrane protein YhaH	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
Inner membrane protein YhaI	Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein	Clustering-based subsystems	
tRNA-dependent lipid II--L-alanine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-Ala--L-alanine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II--amino acid ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II--glycine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-Gly--glycine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II--glycine ligase (FmhB)	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-GlyGly--glycine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-GlyGlyGly--glycine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-GlyGlyGlyGly--glycine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-AlaAla--L-alanine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II--L-serine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-Ser--L-alanine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-Ala--L-serine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
tRNA-dependent lipid II-AlaAla--L-serine ligase	tRNA-dependent_amino_acid_transfers	Cell Wall and Capsule	
Vancomycin response regulator VanR	Resistance_to_Vancomycin	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Vancomycin resistance protein VanH	Resistance_to_Vancomycin	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Vancomycin Teicoplanin A-type resistance protein VanA	Resistance_to_Vancomycin	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Vancomycin B-type resistance protein VanX	Resistance_to_Vancomycin	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Vancomycin B-type resistance protein VanW	Resistance_to_Vancomycin	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Sensor histidine kinase VanS (EC 2.7.3.-)	Resistance_to_Vancomycin	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Protein VanZ	Resistance_to_Vancomycin	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1	Coenzyme_F420_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2	Coenzyme_F420_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Coenzyme F420-0:L-glutamate ligase	Coenzyme_F420_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Coenzyme F420-1:L-glutamate ligase	Coenzyme_F420_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Lactyl (2) diphospho-(5')guanosine:7,8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase	Coenzyme_F420_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Coenzyme gamma-F420-2:L-glutamate ligase	Coenzyme_F420_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
putative L-glutamate ligase	Coenzyme_F420_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Xanthosine phosphorylase (EC 2.4.2.1)	Xanthosine_utilization_(xap_region)	Nucleosides and Nucleotides	Purines
Xanthosine permease	Xanthosine_utilization_(xap_region)	Nucleosides and Nucleotides	Purines
Xanthosine operon regulatory protein XapR, LysR family	Xanthosine_utilization_(xap_region)	Nucleosides and Nucleotides	Purines
Xanthosine permease pseudogene caused by IS154 insertion	Xanthosine_utilization_(xap_region)	Nucleosides and Nucleotides	Purines
Xanthosine permease, C-terminus	Xanthosine_utilization_(xap_region)	Nucleosides and Nucleotides	Purines
Putative xanthosine permease	Xanthosine_utilization_(xap_region)	Nucleosides and Nucleotides	Purines
Nucleotidyltransferase associated with HEPN-containing protein	Two_clustered_nucleotidyltransferase_genes_(maybe_subunits?)	Clustering-based subsystems	Possible nucleotidyltransferase
HEPN domain-containing nucleotidyltransferase	Two_clustered_nucleotidyltransferase_genes_(maybe_subunits?)	Clustering-based subsystems	Possible nucleotidyltransferase
Metal-dependent hydrolases of the beta-lactamase superfamily I	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase (EC 3.5.2.6)	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase repressor BlaI	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase class C and other penicillin binding proteins	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase (Cephalosporinase) (EC 3.5.2.6)	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Metal-dependent hydrolases of the beta-lactamase superfamily III	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase class A	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase class D	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Probable beta-lactamase ybxI precursor (EC 3.5.2.6)	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Negative regulator of beta-lactamase expression	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Metal-dependent hydrolases of the beta-lactamase superfamily II	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase AmpS	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Regulatory protein BlaR1	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase PSE-2 precursor (EC 3.5.2.6)	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase CTX-M-16	Beta-lactamase	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Uroporphyrinogen-III synthase (EC 4.2.1.75)	A_Heme_Biosynthetic_Cluster	Clustering-based subsystems	
FIG006581: hypothetical protein	A_Heme_Biosynthetic_Cluster	Clustering-based subsystems	
FIG000868: Homolog of E. coli HemY protein	A_Heme_Biosynthetic_Cluster	Clustering-based subsystems	
Uracil-DNA glycosylase, family 1	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
Uracil-DNA glycosylase, family 5	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
G:T/U mismatch-specific uracil/thymine DNA-glycosylase	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
Domain often clustered or fused with uracil-DNA glycosylase	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
Uracil-DNA glycosylase, putative family 6	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
Uracil-DNA glycosylase, family 4	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
Uracil DNA glycosylase superfamily protein	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
Uracil-DNA glycosylase, family 3	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
Uracil-DNA glycosylase family protein, clostridial type	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
U/G & T/G mismatch specific glycosylase (Pa-MIG)	Uracil-DNA_glycosylase	DNA Metabolism	DNA repair
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	CBSS-87626.3.peg.3639	Clustering-based subsystems	
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	CBSS-87626.3.peg.3639	Clustering-based subsystems	
Xaa-Pro aminopeptidase (EC 3.4.11.9)	CBSS-87626.3.peg.3639	Clustering-based subsystems	
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	CBSS-87626.3.peg.3639	Clustering-based subsystems	
FIG001590: Putative conserved exported protein precursor	CBSS-87626.3.peg.3639	Clustering-based subsystems	
FIG034376: Hypothetical protein	CBSS-316273.3.peg.2709	Clustering-based subsystems	
FIG036757: Plasmid-related protein	CBSS-316273.3.peg.2709	Clustering-based subsystems	
FIG041301: Hypothetical protein	CBSS-316273.3.peg.2709	Clustering-based subsystems	
FIG046709: Hypothetical protein	CBSS-316273.3.peg.2709	Clustering-based subsystems	
FIG049434: Periplasmic protein TonB, links inner and outer membranes	CBSS-316273.3.peg.2709	Clustering-based subsystems	
FIG076210: Hypothetical protein	CBSS-316273.3.peg.2709	Clustering-based subsystems	
FIG076676: Hypothetical protein	CBSS-316273.3.peg.2709	Clustering-based subsystems	
Superfamily II DNA/RNA helicases, SNF2 family	CBSS-316273.3.peg.2709	Clustering-based subsystems	
Inner membrane protein YhjD	Inner_membrane_protein_YhjD_and_conserved_cluster_involved_in_LPS_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
LysR family transcriptional regulator YhjC	Inner_membrane_protein_YhjD_and_conserved_cluster_involved_in_LPS_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Inner membrane metabolite transport protein YhjE	Inner_membrane_protein_YhjD_and_conserved_cluster_involved_in_LPS_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Uncharacterized protein YhjG	Inner_membrane_protein_YhjD_and_conserved_cluster_involved_in_LPS_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
GGDEF/EAL domain protein YhjH	Inner_membrane_protein_YhjD_and_conserved_cluster_involved_in_LPS_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Protein YhjJ, putative peptidase	Inner_membrane_protein_YhjD_and_conserved_cluster_involved_in_LPS_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Ferric iron ABC transporter, permease protein	COG0523_and_iron	Experimental Subsystems	
Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)	COG0523_and_iron	Experimental Subsystems	
COG0523: Putative GTPases (G3E family)	COG0523_and_iron	Experimental Subsystems	
Ferredoxin	COG0523_and_iron	Experimental Subsystems	
Oxidoreductase	COG0523_and_iron	Experimental Subsystems	
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis	COG0523_and_iron	Experimental Subsystems	
D-mannonate oxidoreductase (EC 1.1.1.57)	COG0523_and_iron	Experimental Subsystems	
Cobalt-containing nitrile hydratase subunit beta (EC 4.2.1.84)	COG0523_and_iron	Experimental Subsystems	
Cobalt-containing nitrile hydratase subunit alpha (EC 4.2.1.84)	COG0523_and_iron	Experimental Subsystems	
NADH:ubiquinone oxidoreductase 49 kD subunit 7	COG0523_and_iron	Experimental Subsystems	
Similar to ferrous iron transporter protein B	COG0523_and_iron	Experimental Subsystems	
Uroporphyrinogen decarboxylase (URO-D)	COG0523_and_iron	Experimental Subsystems	
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	Bacterial_hemoglobins	Stress Response	
Hemoglobin-like protein HbO	Bacterial_hemoglobins	Stress Response	
Putative bacterial haemoglobin	Bacterial_hemoglobins	Stress Response	
Cyanoglobin	Bacterial_hemoglobins	Stress Response	
Hypothetical protein in Cyanoglobin locus	Bacterial_hemoglobins	Stress Response	
Protein containing plastocyanin/azurin family domain	Bacterial_hemoglobins	Stress Response	
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)	Bacterial_hemoglobins	Stress Response	
FUPA30 P-type ATPase	Family_30_FUPA30_P-type_ATPase		
Molybdenum cofactor biosynthesis protein MoaC	Family_30_FUPA30_P-type_ATPase		
Molybdopterin biosynthesis protein MoeA	Family_30_FUPA30_P-type_ATPase		
Diacylglycerol kinase (EC 2.7.1.107)	Family_30_FUPA30_P-type_ATPase		
Rhodanese-related sulfurtransferase	Family_30_FUPA30_P-type_ATPase		
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Family_30_FUPA30_P-type_ATPase		
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Family_30_FUPA30_P-type_ATPase		
Peptidyl-prolyl cis-trans isomerase ppiD (EC 5.2.1.8)	Family_30_FUPA30_P-type_ATPase		
Thiamin biosynthesis lipoprotein ApbE	Family_30_FUPA30_P-type_ATPase		
ABC-type sugar transport systems ATPase components	Family_30_FUPA30_P-type_ATPase		
Molecular chaperone (small heat shock protein)	Family_30_FUPA30_P-type_ATPase		
Metal-dependent phosphohydrolase, HD subdomain	Family_30_FUPA30_P-type_ATPase		
NiFe-hydrogenase I cytochrome b subunit	Family_30_FUPA30_P-type_ATPase		
putative DNA polymerase epsilon subunit	Family_30_FUPA30_P-type_ATPase		
Tetracycline resistance element mobilization regulatory protein rteC	Family_30_FUPA30_P-type_ATPase		
nodulin 21-related protein	Family_30_FUPA30_P-type_ATPase		
PAP2 superfamily protein	Family_30_FUPA30_P-type_ATPase		
Thioredoxin Disulfide Isomerase	Family_30_FUPA30_P-type_ATPase		
Sulfatase family protein	Family_30_FUPA30_P-type_ATPase		
Two-component Sensor Histidine Kinase	Family_30_FUPA30_P-type_ATPase		
Phosphoesterase, DHH family protein	SA:14-24	Clustering-based subsystems	
LSU ribosomal protein L9p	SA:14-24	Clustering-based subsystems	
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]	SA:14-24	Clustering-based subsystems	
Adenylosuccinate synthetase (EC 6.3.4.4)	SA:14-24	Clustering-based subsystems	
Two-component response regulator SA14-24	SA:14-24	Clustering-based subsystems	
Two-component sensor kinase SA14-24	SA:14-24	Clustering-based subsystems	
FIG011501: YycH protein	SA:14-24	Clustering-based subsystems	
hypothetical protein SA_21	SA:14-24	Clustering-based subsystems	
Zn-dependent hydrolase (beta-lactamase superfamily)	SA:14-24	Clustering-based subsystems	
Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)	SA:14-24	Clustering-based subsystems	
Virulence-associated cell-wall-anchored protein SasH (LPXTG motif)	SA:14-24	Clustering-based subsystems	
LSU m3Psi1915 methyltransferase RlmH	SA:14-24	Clustering-based subsystems	
Archaeosortase C	Archaeosortase_C_system	Protein Metabolism	Protein processing and modification
PEF-CTERM protein	Archaeosortase_C_system	Protein Metabolism	Protein processing and modification
Acetolactate synthase, catabolic (EC 2.2.1.6)	Alpha-acetolactate_operon	Carbohydrates	Organic acids
Alpha-acetolactate decarboxylase (EC 4.1.1.5)	Alpha-acetolactate_operon	Carbohydrates	Organic acids
Na+/H+ antiporter NhaA type	Na(+)_H(+)_antiporter	Membrane Transport	Uni- Sym- and Antiporters
Na+/H+ antiporter NhaD type	Na(+)_H(+)_antiporter	Membrane Transport	Uni- Sym- and Antiporters
Multidrug resistance protein [function not yet clear]	Multidrug_Resistance,_2-protein_version_Found_in_Gram-positive_bacteria	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Membrane component of multidrug resistance system	Multidrug_Resistance,_2-protein_version_Found_in_Gram-positive_bacteria	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
TetR family regulatory protein of MDR cluster	Multidrug_Resistance,_2-protein_version_Found_in_Gram-positive_bacteria	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Predicted iron-dependent peroxidase, Dyp-type family	Heme_deferrochelatase	Clustering-based subsystems	
Predicted outer membrane lipoprotein YfeY	Heme_deferrochelatase	Clustering-based subsystems	
Inner membrane protein YfeZ	Heme_deferrochelatase	Clustering-based subsystems	
Acetyltransferase YpeA	Heme_deferrochelatase	Clustering-based subsystems	
Cyanide insensitive terminal oxidase, subunit I	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Cyanide insensitive terminal oxidase, subunit II	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Cyanide insensitive terminal oxidase, putative subunit III	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Phosphatidylserine decarboxylase (EC 4.1.1.65)	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Carbonic anhydrase (EC 4.2.1.1)	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Sulfate transporter family protein in cluster with carbonic anhydrase	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Rhodanese-related sulfurtransferase	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Hydrogen cyanide synthase HcnA	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Hydrogen cyanide synthase HcnB	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Hydrogen cyanide synthase HcnC	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Formate dehydrogenase O alpha subunit (EC 1.2.1.2)	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Formate dehydrogenase O beta subunit (EC 1.2.1.2)	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
Formate dehydrogenase O gamma subunit (EC 1.2.1.2)	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
formate dehydrogenase formation protein FdhE	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
NADH peroxidase Npx (EC 1.11.1.1)	Aspergillus_nidulans_cyanide	Virulence, Disease and Defense	
ATP-dependent DNA helicase UvrD/PcrA, actinomycete paralog	WhiB_and_WhiB-type_regulatory_proteins		
FIG083739: Putative secreted protein	WhiB_and_WhiB-type_regulatory_proteins		
Ferredoxin--sulfite reductase, actinobacterial type (EC 1.8.7.1)	WhiB_and_WhiB-type_regulatory_proteins		
Glycosyl transferase, family 2	WhiB_and_WhiB-type_regulatory_proteins		
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	WhiB_and_WhiB-type_regulatory_proteins		
Lactyl (2) diphospho-(5')guanosine:7,8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase	WhiB_and_WhiB-type_regulatory_proteins		
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	WhiB_and_WhiB-type_regulatory_proteins		
Signal transduction histidine kinase, subgroup 2	WhiB_and_WhiB-type_regulatory_proteins		
Sporulation regulatory protein WhiB	WhiB_and_WhiB-type_regulatory_proteins		
Sporulation regulatory protein WhiD	WhiB_and_WhiB-type_regulatory_proteins		
WhiB-family transcriptional regulator	WhiB_and_WhiB-type_regulatory_proteins		
WhiB-like transcription regulator	WhiB_and_WhiB-type_regulatory_proteins		
WhiB-type transcription regulator	WhiB_and_WhiB-type_regulatory_proteins		
WhiB-type transcriptional regulator	WhiB_and_WhiB-type_regulatory_proteins		
dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL	WhiB_and_WhiB-type_regulatory_proteins		
WhiB-like transcriptional regulator	WhiB_and_WhiB-type_regulatory_proteins		
Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)	CBSS-335543.6.peg.1659	Clustering-based subsystems	
FIG017108: hypothetical protein	CBSS-335543.6.peg.1659	Clustering-based subsystems	
FIG092679: Fe-S oxidoreductase	CBSS-335543.6.peg.1659	Clustering-based subsystems	
3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Pca regulon regulatory protein PcaR	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
PhaK-like protein	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
dicarboxylic acid transporter PcaT	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase	Protocatechuate_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Lipopolysaccharide biosynthesis chain length determinant protein	Cell_wall_related_cluster	Clustering-based subsystems	
Protein-tyrosine kinase (EC 2.7.1.112)	Cell_wall_related_cluster	Clustering-based subsystems	
FIG022606: AAA ATPase	Cell_wall_related_cluster	Clustering-based subsystems	
FIG070318: hypothetical protein	Cell_wall_related_cluster	Clustering-based subsystems	
FIG004655: Polysaccharide deacetylase	Cell_wall_related_cluster	Clustering-based subsystems	
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnH	Cell_wall_related_cluster	Clustering-based subsystems	
Eight transmembrane protein EpsH	Cell_wall_related_cluster	Clustering-based subsystems	
EpsI protein	Cell_wall_related_cluster	Clustering-based subsystems	
FIG123464: Polysaccharide export protein	Cell_wall_related_cluster	Clustering-based subsystems	
Glycine-rich cell wall structural protein precursor	Cell_wall_related_cluster	Clustering-based subsystems	
FIG040338: Glycosyl transferase	Cell_wall_related_cluster	Clustering-based subsystems	
FIG137776: Glycosyltransferase	Cell_wall_related_cluster	Clustering-based subsystems	
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) 2	Cell_wall_related_cluster	Clustering-based subsystems	
FIG071646: Sugar transferase	Cell_wall_related_cluster	Clustering-based subsystems	
FIG140336: TPR domain protein	Cell_wall_related_cluster	Clustering-based subsystems	
Phage tail fibers	Phage_tail_fiber_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail fiber protein	Phage_tail_fiber_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail fiber assembly protein	Phage_tail_fiber_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Tail fiber protein [SA bacteriophages 11, Mu50B]	Phage_tail_fiber_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage long tail fiber proximal subunit	Phage_tail_fiber_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage tail fibers chaperone	Phage_tail_fiber_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage long tail fiber proximal connector	Phage_tail_fiber_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Enoyl-CoA hydratase (EC 4.2.1.17)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Transcriptional regulator BkdR of isoleucine and valine catabolism operon	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Butyrate kinase (EC 2.7.2.7)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
phosphotransbutyrylase (EC 2.3.1.19)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Probable acyl-CoA dehydrogenase (EC 1.3.99.3)	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Predicted transcriptional regulator of leucine degradation pathway, MerR family	Isoleucine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Manganese ABC transporter, ATP-binding protein SitB	TroA_Manganese_Transport_System		
Manganese ABC transporter, inner membrane permease protein SitC	TroA_Manganese_Transport_System		
Manganese ABC transporter, inner membrane permease protein SitD	TroA_Manganese_Transport_System		
Manganese ABC transporter, periplasmic-binding protein SitA	TroA_Manganese_Transport_System		
Adenosylcobinamide kinase (EC 2.7.1.156)	A_Cluster-Based_Subsystem_that_is_Probably_a_Salvage_Pathway_Containing_Thiamin_Kinase	Clustering-based subsystems	A cluster-based salvage pathway
Beta N-acetyl-glucosaminidase (EC 3.2.1.52)	A_Cluster-Based_Subsystem_that_is_Probably_a_Salvage_Pathway_Containing_Thiamin_Kinase	Clustering-based subsystems	A cluster-based salvage pathway
Lipoprotein YcfM, part of a salvage pathway of unknown substrate	A_Cluster-Based_Subsystem_that_is_Probably_a_Salvage_Pathway_Containing_Thiamin_Kinase	Clustering-based subsystems	A cluster-based salvage pathway
Thiamine kinase (EC 2.7.1.89)	A_Cluster-Based_Subsystem_that_is_Probably_a_Salvage_Pathway_Containing_Thiamin_Kinase	Clustering-based subsystems	A cluster-based salvage pathway
YcfF/hinT protein: a purine nucleoside phosphoramidase	A_Cluster-Based_Subsystem_that_is_Probably_a_Salvage_Pathway_Containing_Thiamin_Kinase	Clustering-based subsystems	A cluster-based salvage pathway
YcfL protein: an outer membrane lipoprotein that is part of a salvage cluster	A_Cluster-Based_Subsystem_that_is_Probably_a_Salvage_Pathway_Containing_Thiamin_Kinase	Clustering-based subsystems	A cluster-based salvage pathway
YcfP protein: probably an esterase that is part of a salvage cluster	A_Cluster-Based_Subsystem_that_is_Probably_a_Salvage_Pathway_Containing_Thiamin_Kinase	Clustering-based subsystems	A cluster-based salvage pathway
Phage EaA protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage EaC protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage EaE protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage EaG protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage EaI protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage EaA2 protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage EaD protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage EaF protein	Phage_Ea_cluster	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Transcriptional regulator CsgD for 2nd curli operon	Curli_production	Membrane Transport	Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP)
Major curlin subunit precursor CsgA	Curli_production	Membrane Transport	Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP)
Minor curlin subunit CsgB, nucleation component of curlin monomers	Curli_production	Membrane Transport	Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP)
Curli production assembly/transport component CsgE	Curli_production	Membrane Transport	Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP)
Curli production assembly/transport component CsgF	Curli_production	Membrane Transport	Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP)
Curli production assembly/transport component CsgG	Curli_production	Membrane Transport	Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP)
Putative curli production protein CsgC	Curli_production	Membrane Transport	Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP)
Pyruvate formate-lyase (EC 2.3.1.54)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Formate efflux transporter (TC 2.A.44 family)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Phosphate acetyltransferase (EC 2.3.1.8)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Acetate kinase (EC 2.7.2.1)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Alcohol dehydrogenase (EC 1.1.1.1)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Sugar/maltose fermentation stimulation protein homolog	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
D-lactate dehydrogenase (EC 1.1.1.28)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Pyruvate kinase (EC 2.7.1.40)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase, ethanolamine utilization cluster	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
CoA-acylating propionaldehyde dehydrogenase	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
L-lactate dehydrogenase (EC 1.1.1.27)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Phosphoenolpyruvate carboxylase, archaeal (EC 4.1.1.31)	Fermentations:_Mixed_acid	Carbohydrates	Fermentation
Cu+ P-type ATPase	Family_05_Cu+_P-type_ATPase		
Thioredoxin	Family_05_Cu+_P-type_ATPase		
Zinc ABC transporter, ATP-binding protein ZnuC	Family_05_Cu+_P-type_ATPase		
Putative activity regulator of membrane protease YbbK	Family_05_Cu+_P-type_ATPase		
Valyl-tRNA synthetase (EC 6.1.1.9)	Family_05_Cu+_P-type_ATPase		
possible Copper-sensing transcriptional repressor csoR Copper-sensitive operon repressor	Family_05_Cu+_P-type_ATPase		
Negative transcriptional regulator-copper transport operon	Family_05_Cu+_P-type_ATPase		
HTH-type transcriptional regulator cueR	Family_05_Cu+_P-type_ATPase		
Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein	Family_05_Cu+_P-type_ATPase		
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Family_05_Cu+_P-type_ATPase		
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Family_05_Cu+_P-type_ATPase		
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Family_05_Cu+_P-type_ATPase		
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation	Family_05_Cu+_P-type_ATPase		
Putative analog of CcoH, COG3198	Family_05_Cu+_P-type_ATPase		
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion	Family_05_Cu+_P-type_ATPase		
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Family_05_Cu+_P-type_ATPase		
alpha-1,6-rhamnosyltransferase	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
alpha-1,3-rhamnosyltransferase	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
alpha-1,6-rhamnosyltransferase paralog	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
Glycosyl transferase in large core OS assembly cluster	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
Hypothetical protein FIG015671 in large core OS assembly cluster	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
Probable transcription regulator Mig-14	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
Carbamoyltransferase in large core OS assembly cluster	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
Glycosyltransferase (EC 2.4.1.-) in large core OS assembly cluster	Core_Oligosaccharide_Glycosylation_in_Pseudomonas	Cell Wall and Capsule	Gram-Negative cell wall components
Alkaline proteinase inhibitor precursor	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
ABC-type protease exporter, ATP-binding component PrtD/AprD	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
ABC-type protease exporter, outer membrane component PrtF/AprF	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
Secreted alkaline metalloproteinase (EC 3.4.24.-), PrtA/B/C/G homolog	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
Hemophore HasA	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
Hemophore HasA outer membrane receptor HasR	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
ABC exporter for hemopore HasA, ATP-binding component HasD	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
ABC exporter for hemopore HasA, membrane fusion protein (MFP) family component HasE	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
ABC exporter for hemopore HasA, outer membrane component HasF	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
Probable transmembrane heme sensor	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
Putative tonB protein	Protein_secretion_by_ABC-type_exporters	Protein Metabolism	Secretion
Arsenate reductase (EC 1.20.4.1)	Arsenic_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Arsenic efflux pump protein	Arsenic_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Arsenical resistance operon repressor	Arsenic_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Arsenical-resistance protein ACR3	Arsenic_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Arsenical pump-driving ATPase (EC 3.6.3.16)	Arsenic_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Arsenical resistance operon trans-acting repressor ArsD	Arsenic_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Arsenic resistance protein ArsH	Arsenic_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Bacteriophage protein GP46	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Bacteriophage tail sheath protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG003269: Prophage tail protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG111678: IS, phage, Tn	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG121501: Prophage tail protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Mu-like prophage FluMu protein GP38	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Phage FluMu protein gp47	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Phage tail length tape-measure protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Phage tail tube protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Phage tail/DNA circulation protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Prophage baseplate assembly protein V	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Prophage tail fiber protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG032563: Phage tail protein D	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG101079: Lytic enzyme	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG027828: Putative bacteriophage protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG017723: Putative cI prophage repressor protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Prophage long tail fiber protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Putative tail fiber assembly protein p37	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Mu-like prophage FluMu protein gp37	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Mu-like prophage FluMu protein gp41	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Mu-like prophage FluMu protein gp42	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Mu-like prophage protein GP36	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
prophage MuSo2, virion morphogenesis protein, putative	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG035595: Phage protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG069533: Putative bacteriophage protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
Mu-like prophage FluMu I protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG094335: Putative phage protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG117822: Putative phage protein	Prophage_cluster_in_the_proteobacteria	Clustering-based subsystems	Prophage
FIG073159: hypothetical protein	A_cluster_relating_to_a_Transcriptional_regulator,_LysR_family	Clustering-based subsystems	
FIG123062: hypothetical protein	A_cluster_relating_to_a_Transcriptional_regulator,_LysR_family	Clustering-based subsystems	
FIG032225: Transcriptional regulator, LysR family	A_cluster_relating_to_a_Transcriptional_regulator,_LysR_family	Clustering-based subsystems	
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
D-alanine--D-alanine ligase (EC 6.3.2.4)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Glutamate racemase (EC 5.1.1.3)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Glutamine synthetase type I (EC 6.3.1.2)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Rare lipoprotein A precursor	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
D-alanine--D-alanine ligase B (EC 6.3.2.4)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Penicillin-binding protein 2 (PBP-2)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Rod shape-determining protein RodA	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
D-alanine--D-alanine ligase A (EC 6.3.2.4)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Murein-DD-endopeptidase (EC 3.4.99.-)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2)	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Penicillin-binding protein 4 precursor	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	Peptidoglycan_Biosynthesis	Cell Wall and Capsule	
Protein involved in stability of MscS mechanosensitive channel	Mechanosensitive_channels	Experimental Subsystems	
Large-conductance mechanosensitive channel	Mechanosensitive_channels	Experimental Subsystems	
H(+)/Cl(-) exchange transporter ClcA	Mechanosensitive_channels	Experimental Subsystems	
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Glutamate_and_Aspartate_uptake_in_Bacteria	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4)	Glutamate_and_Aspartate_uptake_in_Bacteria	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4)	Glutamate_and_Aspartate_uptake_in_Bacteria	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)	Glutamate_and_Aspartate_uptake_in_Bacteria	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)	Glutamate_and_Aspartate_uptake_in_Bacteria	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aminoglycoside N6'-acetyltransferase (EC 2.3.1.82)	Aminoglycoside_adenylyltransferases	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Spectinomycin 9-O-adenylyltransferase	Aminoglycoside_adenylyltransferases	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Streptomycin 3''-O-adenylyltransferase (EC 2.7.7.47)	Aminoglycoside_adenylyltransferases	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Glycosyltransferase IroB	Salmochelin-mediated_Iron_Acquisition	Iron acquisition and metabolism	Siderophores
ABC transporter protein IroC	Salmochelin-mediated_Iron_Acquisition	Iron acquisition and metabolism	Siderophores
Trilactone hydrolase IroD	Salmochelin-mediated_Iron_Acquisition	Iron acquisition and metabolism	Siderophores
Periplasmic esterase IroE	Salmochelin-mediated_Iron_Acquisition	Iron acquisition and metabolism	Siderophores
Outer Membrane Siderophore Receptor IroN	Salmochelin-mediated_Iron_Acquisition	Iron acquisition and metabolism	Siderophores
Dihydropyrimidinase (EC 3.5.2.2)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Beta-ureidopropionase (EC 3.5.1.6)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Hydantoin permease	Hydantoin_metabolism	Nucleosides and Nucleotides	
Urocanate hydratase (EC 4.2.1.49)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Hydantoin racemase (EC 5.1.99.-)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Cytosine/purine/uracil/thiamine/allantoin permease family protein	Hydantoin_metabolism	Nucleosides and Nucleotides	
N-methylhydantoinase B (EC 3.5.2.14)	Hydantoin_metabolism	Nucleosides and Nucleotides	
N-methylhydantoinase A (EC 3.5.2.14)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization	Hydantoin_metabolism	Nucleosides and Nucleotides	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	Hydantoin_metabolism	Nucleosides and Nucleotides	
N-methylhydantoinase (ATP-hydrolyzing) (EC 3.5.2.14)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Allantoinase (EC 3.5.2.5)	Hydantoin_metabolism	Nucleosides and Nucleotides	
hydantoin racemase	Hydantoin_metabolism	Nucleosides and Nucleotides	
Hypothetical protein probably related to hydantoin metabolism	Hydantoin_metabolism	Nucleosides and Nucleotides	
D-hydantoinase (EC 3.5.2.2)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Deacetylases, including yeast histone deacetylase and acetoin utilization protein	Hydantoin_metabolism	Nucleosides and Nucleotides	
Hydantoinase	Hydantoin_metabolism	Nucleosides and Nucleotides	
Hydantoinase/oxoprolinase family protein	Hydantoin_metabolism	Nucleosides and Nucleotides	
Hydantoin utilization protein A	Hydantoin_metabolism	Nucleosides and Nucleotides	
Putative Histidine ammonia-lyase (EC 4.3.1.3)	Hydantoin_metabolism	Nucleosides and Nucleotides	
Putative Allantokinase	Hydantoin_metabolism	Nucleosides and Nucleotides	
Extracellular Matrix protein PelA	Extracellular_matrix_proteins_(PEL)_involved_in_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelB	Extracellular_matrix_proteins_(PEL)_involved_in_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelC	Extracellular_matrix_proteins_(PEL)_involved_in_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelD	Extracellular_matrix_proteins_(PEL)_involved_in_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelE	Extracellular_matrix_proteins_(PEL)_involved_in_biofilm_formation_in_Pseudomonas		
Extracellular matrix protein PelF, glycosyltransferase, group 1	Extracellular_matrix_proteins_(PEL)_involved_in_biofilm_formation_in_Pseudomonas		
Extracellular Matrix protein PelG	Extracellular_matrix_proteins_(PEL)_involved_in_biofilm_formation_in_Pseudomonas		
Outer membrane stress sensor protease DegS	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
Membrane-associated zinc metalloprotease	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
Sigma factor RpoE negative regulatory protein RseA	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
Outer membrane protein H precursor	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
HtrA protease/chaperone protein	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
Outer membrane stress sensor protease DegQ, serine protease	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
Sigma factor RpoE negative regulatory protein RseB precursor	Periplasmic_Stress_Response	Stress Response	Periplasmic Stress
Formate dehydrogenase subunit or accessory protein	A_protein_believed_to_be_a_subunit_or_accessory_protein_of_the_formate_dehydrogenase	Clustering-based subsystems	
Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	A_protein_believed_to_be_a_subunit_or_accessory_protein_of_the_formate_dehydrogenase	Clustering-based subsystems	
HlyD family secretion protein	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
TetR family transcriptional regulator probably coupled to RND multidrug efflux transporter	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Adenine phosphoribosyltransferase (EC 2.4.2.7)	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Acriflavin resistance protein	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Probable RND efflux membrane fusion protein	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Primosomal replication protein N prime prime	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
tRNA-dependent lipid II--glycine ligase (FmhB)	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Efflux transporter, RND family, MFP subunit, AcrA/E family	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Outer membrane protein, RND efflux system precursor	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Potential AcrEF/EnvCD operon repressor	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
Potential AcrAB operon repressor	Acriflavin_resistance_cluster	Experimental Subsystems	Resistance to antibiotics and toxic compounds
terpene synthase/cyclase family protein / go_process: terpenoid biosynthesis [goid 0016114]	Terpen_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
cytochrome P450, putative / go_function: cytochrome P450 activity [goid 0015034]; go_function: oxygen binding [goid 0019825]	Terpen_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
UDP-glucoronosyl/UDP-glucosyl transferase family protein / contains similarity to glucosyltransferases; go_function: UDP-glycosyltransferase activity [goid 0008194]; go_function: transferase activity, transferring glycosyl groups [goid 0016757]	Terpen_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Ribonuclease HII (EC 3.1.26.4)	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Ribonuclease HIII (EC 3.1.26.4)	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Ribonuclease HI-related protein 3	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Ribonuclease HI (EC 3.1.26.4)	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Ribonuclease HI, Vibrio paralog	Ribonuclease_H	RNA Metabolism	RNA processing and modification
hypothetical protein ssl1918	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Ribonuclease HI-related protein	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Ribonuclease HI-related protein 2	Ribonuclease_H	RNA Metabolism	RNA processing and modification
Flagellar regulatory protein FleQ	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar motor switch protein FliM	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar assembly protein FliH	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellum-specific ATP synthase FliI	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar motor switch protein FliN	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FlhB	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar motor switch protein FliG	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FliR	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FliQ	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar sensor histidine kinase FleS	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FliL	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar hook-length control protein FliK	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar M-ring protein FliF	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FliP	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar hook-basal body complex protein FliE	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FlhA	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FlhF	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar protein FliJ	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar biosynthesis protein FliO	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Flagellar synthesis regulator FleN	Flagellum-CBSS-351745.7.peg.1335	Experimental Subsystems	
Origin of replication recognition protein	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Cell division control protein 6	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
DNA replication helicase protein MCM	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Replication factor A (ssDNA-binding protein)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
DNA primase small subunit (EC 2.7.7.-)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
DNA primase large subunit (EC 2.7.7.-)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Replication factor C large subunit	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Replication factor C small subunit	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
DNA polymerase sliding clamp protein PCNA	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Archaeal DNA polymerase I (EC 2.7.7.7)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Archaeal DNA polymerase II large subunit (EC 2.7.7.7)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Archaeal DNA polymerase II small subunit (EC 2.7.7.7)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Ribonuclease HII (EC 3.1.26.4)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
ATP-dependent DNA ligase (EC 6.5.1.1)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Flap structure-specific endonuclease (EC 3.-.-.-)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Replication protein A (two OB fold, one zinc finger)	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
Dna2 helicase involved in Okazaki fragment processing	DNA_replication,_archaeal_Isaac	Experimental Subsystems	
CcdA protein (antitoxin to CcdB)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB protein (antitoxin to VapC)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YoeB toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YefM protein (antitoxin to YoeB)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YkfI toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YafW protein (antitoxin to YkfI)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
ParE toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
ParD protein (antitoxin to ParE)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YafQ toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
DNA-damage-inducible protein J	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
HigB toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
HigA protein (antitoxin to HigB)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
CcdB toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YeeV toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YeeU protein (antitoxin to YeeV)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Toxin mRNA interferase YgiU	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Antitoxin YgiT	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YpjF toxin protein	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
YfjZ protein (antitoxin to YpjF)	Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF)	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
3-dehydroquinate dehydratase II (EC 4.2.1.10)	CBSS-221988.1.peg.1679	Clustering-based subsystems	
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	CBSS-221988.1.peg.1679	Clustering-based subsystems	
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	CBSS-221988.1.peg.1679	Clustering-based subsystems	
FIG003021: Membrane protein	CBSS-221988.1.peg.1679	Clustering-based subsystems	
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	CBSS-221988.1.peg.1679	Clustering-based subsystems	
Transcription accessory protein (S1 RNA-binding domain)	CBSS-393131.3.peg.612	Clustering-based subsystems	
Putative metallopeptidase (Zinc) SprT family	CBSS-393131.3.peg.612	Clustering-based subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Q-derivative	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	Q-derivative	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	Q-derivative	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	Q-derivative	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	Q-derivative	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	Q-derivative	Experimental Subsystems	
tgtA5 cluster protein 1	Q-derivative	Experimental Subsystems	
tgtA5 cluster protein 2	Q-derivative	Experimental Subsystems	
Lhr-like helicases	Q-derivative	Experimental Subsystems	
COG0419: ATPase involved in DNA repair	Q-derivative	Experimental Subsystems	
ATP-dependent DNA helicase RecQ	Q-derivative	Experimental Subsystems	
COG0553: Superfamily II DNA/RNA helicases, SNF2 family	Q-derivative	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Q-derivative	Experimental Subsystems	
Putative preQ0 transporter	Q-derivative	Experimental Subsystems	
tgtA5 cluster protein 3	Q-derivative	Experimental Subsystems	
Exonuclease SbcC	Q-derivative	Experimental Subsystems	
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	CBSS-292414.1.peg.563	Clustering-based subsystems	
FIG119243: hypothetical protein	CBSS-292414.1.peg.563	Clustering-based subsystems	
RNA polymerase sigma factor RpoH	CBSS-292414.1.peg.563	Clustering-based subsystems	
3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100) in cluster with unspecified monosaccharide transporter	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
ACT domain protein	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Cell division protein FtsK	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
FIG001621: Zinc protease	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
FIG009210: peptidase, M16 family	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Transcriptional regulator in cluster with Zn-dependent hydrolase	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Transcriptional regulator in cluster with unspecified monosaccharide ABC transport system	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Unspecified monosaccharide ABC transport system, ATP-binding protein	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Unspecified monosaccharide ABC transport system, permease component 2	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Unspecified monosaccharide ABC transport system, permease component Ia (FIG025991)	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Unspecified monosaccharide ABC transport system, substrate-binding component	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
FIG007042: hypothetical protein	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
FIG003568: hypothetical protein	Unspecified_monosaccharide_transport_cluster	Clustering-based subsystems	Monosaccharides
Aldehyde dehydrogenase A (EC 1.2.1.22)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Aldehyde dehydrogenase B (EC 1.2.1.22)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Hypothetical protein YaeR with similarity to glyoxylase family	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Lactoylglutathione lyase (EC 4.4.1.5)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Methylglyoxal synthase (EC 4.2.3.3)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Aldehyde dehydrogenase (EC 1.2.1.3)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
NADPH-dependent methylglyoxal reductase (D-lactaldehyde dehydrogenase)	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Glyoxylase family protein	Methylglyoxal_Metabolism	Carbohydrates	Central carbohydrate metabolism
Pertussis toxin subunit 1 precursor (NAD-dependent ADP-ribosyltransferase) (EC 2.4.2.-)	Pertussis_toxin	Virulence, Disease and Defense	Toxins and superantigens
Pertussis toxin subunit 2 precursor (PTX S2)	Pertussis_toxin	Virulence, Disease and Defense	Toxins and superantigens
Pertussis toxin subunit 3 precursor (PTX S3)	Pertussis_toxin	Virulence, Disease and Defense	Toxins and superantigens
Pertussis toxin subunit 4 precursor (PTX S4)	Pertussis_toxin	Virulence, Disease and Defense	Toxins and superantigens
Pertussis toxin subunit 5 precursor (PTX S5)	Pertussis_toxin	Virulence, Disease and Defense	Toxins and superantigens
Major pilus subunit of type IV secretion complex (VirB2)	Pertussis_toxin	Virulence, Disease and Defense	Toxins and superantigens
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase (EC 6.3.2.7)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
D-alanine--D-alanine ligase (EC 6.3.2.4)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
D-alanine--D-alanine ligase B (EC 6.3.2.4)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate ligase	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
D-alanine--D-alanine ligase A (EC 6.3.2.4)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoylalanyl-D-glutamate--L-diaminobutyrate ligase	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	Peptidoglycan_biosynthesis--gjo	Cell Wall and Capsule	
Transcriptional activator protein LuxR	Luciferases	Miscellaneous	
Autoinducer synthesis protein LuxI	Luciferases	Miscellaneous	
LuxC, acyl-CoA reductase (EC 1.2.1.50)	Luciferases	Miscellaneous	
LuxD. acyl transferase (EC 2.3.1.-)	Luciferases	Miscellaneous	
LuxA, luciferase alpha chain (EC 1.14.14.3)	Luciferases	Miscellaneous	
LuxB, luciferase beta chain (EC 1.14.14.3)	Luciferases	Miscellaneous	
LuxE, long-chain-fatty-acid ligase (EC 6.2.1.19)	Luciferases	Miscellaneous	
LuxG, NAD(P)H-dependent FMN reductase (EC 1.5.1.29)	Luciferases	Miscellaneous	
NAD-dependent protein deacetylase of SIR2 family	Protein_Acetylation_and_Deacetylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Protein acetyltransferase	Protein_Acetylation_and_Deacetylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Protein_Acetylation_and_Deacetylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Propionate--CoA ligase (EC 6.2.1.17)	Protein_Acetylation_and_Deacetylation_in_Bacteria	Protein Metabolism	Protein processing and modification
Acetate permease ActP (cation/acetate symporter)	Protein_Acetylation_and_Deacetylation_in_Bacteria	Protein Metabolism	Protein processing and modification
ATP-dependent Clp protease ATP-binding subunit ClpA	ClpAS_cluster	Clustering-based subsystems	
ATP-dependent Clp protease adaptor protein ClpS	ClpAS_cluster	Clustering-based subsystems	
Methylamine dehydrogenase light chain precursor (EC 1.4.99.3)	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Methylamine dehydrogenase heavy chain precursor (EC 1.4.99.3)	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Methylamine utilization protein MauD	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Aldehyde dehydrogenase in Methylamine utilization cluster	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Cytochrome c in methylamine utilization cluster	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Methylamine utilization protein MauE	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Methylamine operon regulatory protein	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
Bacillolysin (EC 3.4.24.28)	CBSS-265072.7.peg.546	Clustering-based subsystems	Methylamine utilization
FIG107367: tRNA-binding protein	tRNA_aminoacylation_and_proline_metabolism_related_cluster	Clustering-based subsystems	
Phenylalanyl-tRNA synthetase domain protein (Bsu YtpR)	tRNA_aminoacylation_and_proline_metabolism_related_cluster	Clustering-based subsystems	
FIG009688: Thioredoxin	tRNA_aminoacylation_and_proline_metabolism_related_cluster	Clustering-based subsystems	
FIG014356: hypothetical protein	tRNA_aminoacylation_and_proline_metabolism_related_cluster	Clustering-based subsystems	
Glutamyl aminopeptidase (EC 3.4.11.7)	tRNA_aminoacylation_and_proline_metabolism_related_cluster	Clustering-based subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	tRNA_aminoacylation_and_proline_metabolism_related_cluster	Clustering-based subsystems	
FIG107367: Single-stranded DNA-binding protein	tRNA_aminoacylation_and_proline_metabolism_related_cluster	Clustering-based subsystems	
COG2041: Sulfite oxidase and related enzymes	CBSS-316057.3.peg.880	Clustering-based subsystems	
Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)	CBSS-316057.3.peg.880	Clustering-based subsystems	
ATP phosphoribosyltransferase (EC 2.4.2.17)	XXBOB	Experimental Subsystems	
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	XXBOB	Experimental Subsystems	
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	XXBOB	Experimental Subsystems	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	XXBOB	Experimental Subsystems	
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	XXBOB	Experimental Subsystems	
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	XXBOB	Experimental Subsystems	
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	XXBOB	Experimental Subsystems	
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	XXBOB	Experimental Subsystems	
Histidinol-phosphatase (EC 3.1.3.15)	XXBOB	Experimental Subsystems	
Histidinol dehydrogenase (EC 1.1.1.23)	XXBOB	Experimental Subsystems	
Bacilysin biosynthesis protein BacA	Bacilysin_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Bacilysin biosynthesis protein BacB	Bacilysin_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Bacilysin biosynthesis oxidoreductase BacC	Bacilysin_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Alanine-anticapsin ligase BacD	Bacilysin_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Bacilysin exporter protein BacE	Bacilysin_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Glycerol kinase (EC 2.7.1.30)	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Glycerol uptake facilitator protein	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
DHA-specific IIA component	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
DHA-specific phosphocarrier protein HPr	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
DHA-specific EI component	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
dihydroxyacetone kinase family protein	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Hypothetical protein in cluster with dihydroxyacetone kinase in Rhizobia	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Dihydroxyacetone ABC transport system, ATP-binding protein	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Dihydroxyacetone ABC transport system, permease protein	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Dihydroxyacetone ABC transport system, permease protein 2	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Dihydroxyacetone ABC transport system, substrate-binding protein	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29)	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Sorbitol dehydrogenase (EC 1.1.1.14)	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Putative dihydroxyacetone kinase (EC 2.7.1.29), dihydroxyacetone binding subunit	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Putative dihydroxyacetone kinase (EC 2.7.1.29), ADP-binding subunit	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase operon regulatory protein DhaR	Dihydroxyacetone_kinases	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate transport system transcriptional regulatory protein PgtA	Phosphoglycerate_transport_system	Membrane Transport	
Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-)	Phosphoglycerate_transport_system	Membrane Transport	
Phosphoglycerate transport regulatory protein PgtC	Phosphoglycerate_transport_system	Membrane Transport	
Phosphoglycerate transporter protein PgtP	Phosphoglycerate_transport_system	Membrane Transport	
FIGfam013899: ABC transporter substrate-binding protein	Phosphoglycerate_transport_system	Membrane Transport	
FIGfam012970: transmembrane protein	Phosphoglycerate_transport_system	Membrane Transport	
FIGfam010146: Two component system histidine kinase	Phosphoglycerate_transport_system	Membrane Transport	
FIGfam009438: Two-component system DNA-binding response regulator	Phosphoglycerate_transport_system	Membrane Transport	
A/G-specific adenine glycosylase (EC 3.2.2.-)	CBSS-316056.14.peg.4315	Clustering-based subsystems	
FIG124007: hypothetical protein	CBSS-316056.14.peg.4315	Clustering-based subsystems	
Periplasmic thiol:disulfide interchange protein DsbA	CBSS-316056.14.peg.4315	Clustering-based subsystems	
Glycosyltransferase LafA, responsible for the formation of Glc-DAG	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Glycosyltransferase LafB, responsible for the formation of Gal-Glc-DAG	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Integral membrane protein LafC, accessory function in glycolipid and LTA synthesis	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid primase LtaP	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type Ia	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IIa	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IIb	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IIIa	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type Ib	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IIc	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IIIb1	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IIIb2	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IVa	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Lipoteichoic acid synthase LtaS Type IVb	Polyglycerolphosphate_lipoteichoic_acid_biosynthesis	Cell Wall and Capsule	Gram-Positive cell wall components
Beta hemolysin CylE	Streptococcus_agalactiae_hemolysin_operon	Virulence	Toxins and superantigens
CylF	Streptococcus_agalactiae_hemolysin_operon	Virulence	Toxins and superantigens
CylX	Streptococcus_agalactiae_hemolysin_operon	Virulence	Toxins and superantigens
CylD	Streptococcus_agalactiae_hemolysin_operon	Virulence	Toxins and superantigens
FIG005495: hypothetical protein	Hypothetical_Related_to_Dihydroorotate_dehydrogenase	Clustering-based subsystems	Hypothetical Related to Dihydroorate Dehydrogenase
Dihydroorotate dehydrogenase (EC 1.3.3.1)	Hypothetical_Related_to_Dihydroorotate_dehydrogenase	Clustering-based subsystems	Hypothetical Related to Dihydroorate Dehydrogenase
Insertion element IS1 protein insA	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Insertion element IS1 protein insB	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide biosynthesis protein tviA	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide biosynthesis protein tviC	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide biosynthesis protein tviD	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide biosynthesis protein tviE	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide export ATP-binding protein vexC	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide export inner-membrane protein vexB	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide export inner-membrane protein vexD	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Vi polysaccharide export protein vexE	Capsular_surface_virulence_antigen_loci	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Siderophore [Alcaligin-like] biosynthetic enzyme (EC 1.14.13.59)	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Siderophore [Alcaligin-like] biosynthesis complex, short chain	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Siderophore [Alcaligin-like] biosynthesis complex, long chain	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Iron-siderophore [Alcaligin-like] receptor	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Siderophore [Alcaligin-like] biosynthesis complex, medium chain	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Siderophore [Alcaligin-like] decarboxylase (EC 4.1.1.-)	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Iron-siderophore [Alcaligin-like] transport system, ATP-binding component	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Iron-siderophore [Alcaligin-like] transport system, permease component	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Iron-siderophore [Alcaligin-like] transport system, transmembran component	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Iron-siderophore [Alcaligin-like] transport system, substrate-binding component	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
Iron-siderophore [Alcaligin-like] ferric reductase (1.6.99.14)	Siderophore_[Alcaligin-like]	Iron acquisition and metabolism	Siderophores
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	Sporulation-related_Hypotheticals	Clustering-based subsystems	Clustering-based subsystems
Stage II sporulation protein related to metaloproteases (SpoIIQ)	Sporulation-related_Hypotheticals	Clustering-based subsystems	Clustering-based subsystems
Stage III sporulation protein D	Sporulation-related_Hypotheticals	Clustering-based subsystems	Clustering-based subsystems
MreB-like protein (Mbl protein)	Sporulation-related_Hypotheticals	Clustering-based subsystems	Clustering-based subsystems
FIG013354: hypothetical protein	Sporulation-related_Hypotheticals	Clustering-based subsystems	Clustering-based subsystems
Stage II sporulation protein D	Sporulation-related_Hypotheticals	Clustering-based subsystems	Clustering-based subsystems
Putative esterase, FIGfam005057	CBSS-342610.3.peg.1794	Clustering-based subsystems	
3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)	CBSS-342610.3.peg.1794	Clustering-based subsystems	
Topoisomerase IV subunit B (EC 5.99.1.-)	CBSS-342610.3.peg.1794	Clustering-based subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	CBSS-342610.3.peg.1794	Clustering-based subsystems	
DNA polymerase IV (EC 2.7.7.7)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Endonuclease IV (EC 3.1.21.2)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Endonuclease V (EC 3.1.21.7)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Exodeoxyribonuclease III (EC 3.1.11.2)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Exonuclease SbcC	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA recombination protein RmuC	DNA_repair,_bacterial	DNA Metabolism	DNA repair
RecA protein	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA repair protein RadA	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
SOS-response repressor and protease LexA (EC 3.4.21.88)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA polymerase-like protein PA0670	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Single-stranded DNA-binding protein	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Alkylated DNA repair protein AlkB	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA repair protein RecN	DNA_repair,_bacterial	DNA Metabolism	DNA repair
A/G-specific adenine glycosylase (EC 3.2.2.-)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
G:T/U mismatch-specific uracil/thymine DNA-glycosylase	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA polymerase-like protein MT3142	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Exonuclease SbcD	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA repair protein RadC	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Recombinational DNA repair protein RecT (prophage associated)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA-damage-inducible protein J	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Very-short-patch mismatch repair endonuclease (G-T specific)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA repair exonuclease family protein YhaO	DNA_repair,_bacterial	DNA Metabolism	DNA repair
ADA regulatory protein	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA recombination-dependent growth factor C	DNA_repair,_bacterial	DNA Metabolism	DNA repair
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72)	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA mismatch repair endonuclease MutH	DNA_repair,_bacterial	DNA Metabolism	DNA repair
DNA-damage-inducible protein I	DNA_repair,_bacterial	DNA Metabolism	DNA repair
iron aquisition yersiniabactin synthesis enzyme (Irp1,polyketide synthetase)	Siderophore_Yersiniabactin_Biosynthesis	Iron acquisition and metabolism	Siderophores
iron aquisition yersiniabactin synthesis enzyme (Irp2)	Siderophore_Yersiniabactin_Biosynthesis	Iron acquisition and metabolism	Siderophores
iron aquisition yersiniabactin synthesis enzyme (Irp3)	Siderophore_Yersiniabactin_Biosynthesis	Iron acquisition and metabolism	Siderophores
iron aquisition yersiniabactin synthesis enzyme (YbtT,resembles thioesterases)	Siderophore_Yersiniabactin_Biosynthesis	Iron acquisition and metabolism	Siderophores
iron aquisition 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58,Irp5)	Siderophore_Yersiniabactin_Biosynthesis	Iron acquisition and metabolism	Siderophores
iron aquisition outermembrane yersiniabactin receptor (FyuA,Psn,pesticin receptor)	Siderophore_Yersiniabactin_Biosynthesis	Iron acquisition and metabolism	Siderophores
iron aquisition regulator (YbtA,AraC-like,required for transcription of FyuA/psn,Irp2)	Siderophore_Yersiniabactin_Biosynthesis	Iron acquisition and metabolism	Siderophores
Transcriptional regulator for fatty acid degradation FadR, GntR family	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty acid transport protein	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-CoA hydratase (EC 4.2.1.17)	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acid degradation regulator YsiA, TetR family	Fatty_acid_degradation_regulons	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Enoyl-CoA hydratase (EC 4.2.1.17)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Transcriptional regulator BkdR of isoleucine and valine catabolism operon	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Butyrate kinase (EC 2.7.2.7)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
phosphotransbutyrylase (EC 2.3.1.19)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Probable acyl-CoA dehydrogenase (EC 1.3.99.3)	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
Predicted transcriptional regulator of leucine degradation pathway, MerR family	Valine_degradation	Amino Acids and Derivatives	Branched-chain amino acids
H+ P-type ATPase	Family_03_H+_P-type_ATPase		
ABC transporter, ATP-binding protein	Family_03_H+_P-type_ATPase		
related to methyl-accepting chemotaxis protein	Family_03_H+_P-type_ATPase		
Vitamin B12 ABC transporter, ATPase component BtuD	Family_03_H+_P-type_ATPase		
Amino acid permease	Family_03_H+_P-type_ATPase		
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD29	Mycobacterium_virulence_operon_involved_in_lipid_degradation	Virulence	
Chorismate--pyruvate lyase (EC 4.1.3.40)	Mycobacterium_virulence_operon_involved_in_lipid_degradation	Virulence	
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22	Mycobacterium_virulence_operon_involved_in_lipid_degradation	Virulence	
D-allose kinase (EC 2.7.1.55)	D-allose_utilization	Carbohydrates	Monosaccharides
D-allose-6-phosphate isomerase (EC 5.3.1.-)	D-allose_utilization	Carbohydrates	Monosaccharides
D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-), row_id 1016	D-allose_utilization	Carbohydrates	Monosaccharides
D-allose ABC transporter, substrate-binding component	D-allose_utilization	Carbohydrates	Monosaccharides
D-allose ABC transporter, ATPase component	D-allose_utilization	Carbohydrates	Monosaccharides
D-allose ABC transporter, permease component	D-allose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of D-allose utilization, RpiR family	D-allose_utilization	Carbohydrates	Monosaccharides
D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-), row_id 846	D-allose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of D-allose utilization, LacI family	D-allose_utilization	Carbohydrates	Monosaccharides
PTS system, D-allose-specific IIB component (EC 2.7.1.69)	D-allose_utilization	Carbohydrates	Monosaccharides
PTS system, D-allose-specific IIC component (EC 2.7.1.69)	D-allose_utilization	Carbohydrates	Monosaccharides
PTS system, D-allose-specific IIA component (EC 2.7.1.69)	D-allose_utilization	Carbohydrates	Monosaccharides
T4-like phage protein, T4 GC0927	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded transaldolase, TalC	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded carbon metabolic regulator, CP12	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
6-phosphogluconate dehydrogenase, 6PGDH (EC 1.1.1.44)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0201	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage T4-like protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage-encoded plastoquinol terminal oxidase, PTOX	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0884	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0876	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage T4-like structural protein, T4 GC0119	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0924	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0152	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0922	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0881	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0250	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0142	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0835	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0942	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0744	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
photosystem II protein D1 (PsbA)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded cytidylyltransferase (EC 2.7.7.-)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0313	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0919	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0838	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0900	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded tryptophan halogenase (EC 1.14.14.7), PrnA	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded plastocyanin	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0943	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage heat shock protein Hsp20	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage structural protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0112	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Possible methylamine utilization protein, T4-like	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0937	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded pyrophosphatase, MazG	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage DUF1825 domain-containing protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
photosystem II protein D2 (PsbD)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage-encoded high light-inducible protein, HliP	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0923	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0918	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded porphyrin biosynthetic protein, CobS	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0948	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein with DUF1583 domain,	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage peptidase	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0198	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0945	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0931	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0312	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phosphate starvation-inducible protein PhoH, predicted ATPase	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
2-Oxoglutarate/Fe(II)-dependent oxygenase (EC 1.14.11)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0176	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein with ferrochetalase domain	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0321	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage tail fiber protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0903	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage T4-like structural protein, T4 GC0015	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phytanoyl-CoA dioxygenase (EC 1.14.11.18)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0810	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded photosynthetic antenna protein, CpeT	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0901	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0958	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0987	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0387	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0437	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0285	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded carboxylesterase	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0496	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded heme oxygenase (EC 1.14.99.3), Ho1	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0542	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0751	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage T4-like CP12, carbon metabolic regulator	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC01010	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cyanophage-encoded phosphoribosylaminoimidazole-succinocarboxamide synthase protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage proteinT4 GC0112	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0423	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0957	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage-encoded ferredoxin, PetF	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0596	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like cyanophage S-layer domain protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage ferredoxin oxidoreductase, PcyA	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0163	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage-encoded hemagglutinin domain-containing protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0224	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
15,16-dihydrobiliverdin:ferredoxin oxidoreductase PebA (EC 1.3.7.2); Phycoerythrobilin	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC01011	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage alkaline phosphatase	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0391	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0443	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0466	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Cynophage-encoded carbamoyltransferase (EC 2.1.3.-)	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage carbamoyltransferase	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0864	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Phage short tail fiber protein	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0755	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0959	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0953	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
T4-like phage protein, T4 GC0956	Phage_cyanophage	Phages, Prophages, Transposable elements	Phage family-specific subsystems
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Carbonate_Biomineralization	Miscellaneous	
Transcriptional regulator, TetR family	Carbonate_Biomineralization	Miscellaneous	
Enoyl-CoA hydratase (EC 4.2.1.17)	Carbonate_Biomineralization	Miscellaneous	
Electron transfer flavoprotein, beta subunit	Carbonate_Biomineralization	Miscellaneous	
Electron transfer flavoprotein, alpha subunit	Carbonate_Biomineralization	Miscellaneous	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
NAD-dependent protein deacetylase of SIR2 family	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
Nicotinamidase (EC 3.5.1.19)	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
NAD-dependent deacetylase (EC 3.5.1.-)	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
Poly [ADP-ribose] polymerase-1 (EC 2.4.2.30)	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH)	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
NAD-dependent deacetylase	Redox-dependent_regulation_of_nucleus_processes	Stress Response	Oxidative stress
Transcriptional activator of the alkB cluster	Alkane_Utilization	Experimental Subsystems	
Alkane-1 monooxygenase (EC 1.14.15.3)	Alkane_Utilization	Experimental Subsystems	
Rubredoxin 1	Alkane_Utilization	Experimental Subsystems	
Aldehyde dehydrogenase AlkH (EC 1.2.1.3)	Alkane_Utilization	Experimental Subsystems	
Alcohol dehydrogenase AlkJ (EC 1.1.99.-)	Alkane_Utilization	Experimental Subsystems	
Rubrerythrin	Rubrerythrin	Stress Response	Oxidative stress
Superoxide reductase (EC 1.15.1.2)	Rubrerythrin	Stress Response	Oxidative stress
Rubredoxin	Rubrerythrin	Stress Response	Oxidative stress
Alkyl hydroperoxide reductase subunit C-like protein	Rubrerythrin	Stress Response	Oxidative stress
rubredoxin-oxygen oxidoreductase	Rubrerythrin	Stress Response	Oxidative stress
Rubredoxin-NAD(+) reductase (EC 1.18.1.1)	Rubrerythrin	Stress Response	Oxidative stress
Probable peroxiredoxin (EC 1.11.1.15)	Rubrerythrin	Stress Response	Oxidative stress
Hypothetical protein i Rubrerythrin cluster	Rubrerythrin	Stress Response	Oxidative stress
Fe-S oxidoreductase-like protein in Rubrerythrin cluster	Rubrerythrin	Stress Response	Oxidative stress
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	DNA_repair,_bacterial_photolyase	DNA Metabolism	DNA repair
Deoxyribodipyrimidine photolyase, type II (EC 4.1.99.3)	DNA_repair,_bacterial_photolyase	DNA Metabolism	DNA repair
Cryptochrome	DNA_repair,_bacterial_photolyase	DNA Metabolism	DNA repair
Deoxyribodipyrimidine photolyase, single-strand-specific	DNA_repair,_bacterial_photolyase	DNA Metabolism	DNA repair
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	IleS		
Lipoprotein signal peptidase (EC 3.4.23.36)	IleS		
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	IleS		
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)	IleS		
Cell division protein FtsZ (EC 3.4.24.-)	IleS		
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	IleS		
Serine hydroxymethyltransferase (EC 2.1.2.1)	IleS		
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	IleS		
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	IleS		
Orotate phosphoribosyltransferase (EC 2.4.2.10)	IleS		
Cell division protein YlmG/Ycf19 (putative), YggT family	IleS		
FIG001583: hypothetical protein, contains S4-like RNA binding domain	IleS		
Serine-type D-Ala-D-Ala carboxypeptidase( EC:3.4.16.4 )	IleS		
Inner membrane transport protein YeiM, in cluster with pseudouridine metabolism operon	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Probable pyrimidine nucleoside transport protein associated with pseudouridine catabolism	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Pseudouridine 5'-phosphate glycosidase	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Pseudouridine kinase (EC 2.7.1.83)	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Uncharacterized sugar kinase YeiI	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Hypothetical sugar kinase in cluster with indigoidine synthase indA , PfkB family of kinases	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Indigoidine synthase A-like protein, uncharacterized enzyme involved in pigment biosynthesis	Pseudouridine_Metabolism	Nucleosides and Nucleotides	
Two-component system histidine kinase RacS	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Two-component system response regulator RacR	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Two-component system histidine kinase DccS	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Two-component system response regulator DccR	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Flagellar sensory histidine kinase FlgS	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Signal-transduction regulatory protein FlgR	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Signal transduction histidine kinase CheA (EC 2.7.3.-)	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Positive regulator of CheA protein activity (CheW)	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Two-component system histidine kinase	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Two-component system response regulator	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Putative two-component sensor histidine kinase	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
Putative two-component response regulator	Two-component_regulatory_systems_in_Campylobacter	Regulation and Cell signaling	
related to transesterase [MIPS]	Fungal_cytostatics	Experimental Subsystems	Proposed Subsystem
Sigma-fimbriae uncharacterized paralogous subunit	&#963;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Sigma-fimbriae uncharacterized subunit	&#963;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Sigma-fimbriae chaperone protein	&#963;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Sigma-fimbriae usher protein	&#963;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
Sigma-fimbriae tip adhesin	&#963;-Fimbriae	Virulence	Fimbriae of the Chaperone/Usher Assembly Pathway
ATP-dependent Clp protease adaptor protein ClpS	ClpS__and_metallo-protease_cluster_in_Cyanos	Clustering-based subsystems	
Metal-dependent membrane protease, abortive infection protein	ClpS__and_metallo-protease_cluster_in_Cyanos	Clustering-based subsystems	
SAM radical protein, elongator protein	ClpS__and_metallo-protease_cluster_in_Cyanos	Clustering-based subsystems	
Aerobactin siderophore receptor IutA	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Citrate:6-N-acetyl-6-N-hydroxy-L-lysine ligase, alpha subunit (EC 6.3.2.27), aerobactin biosynthesis protein IucA	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Ferric hydroxamate outer membrane receptor FhuA	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
L-lysine 6-monooxygenase [NADPH] (EC 1.14.13.59), aerobactin biosynthesis protein IucD	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
N6-hydroxylysine O-acetyltransferase (EC 2.3.1.102), aerobactin biosynthesis protein IucB	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Ferric aerobactin ABC transporter, ATPase component	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Ferric aerobactin ABC transporter, periplasmic substrate binding protein	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Ferric aerobactin ABC transporter, permease component	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Transcriptional repressor of aerobactin receptor iutR	Siderophore_Aerobactin	Iron acquisition and metabolism	Siderophores
Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Serine acetyltransferase (EC 2.3.1.30)	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsA, sugar transferase	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsB	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsC, polysaccharide export	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Transcriptional regulator VpsR	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Transcriptional regulator VpsT	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Quorum-sensing regulator of virulence HapR	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Transcriptional regulator CdgA	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
exopolysaccharide biosynthesis protein EpsF, putative	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
polysaccharide export protein, putative	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hypothetical protein VpsF	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
CapK protein, putative	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
polysaccharide biosynthesis protein, putative	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hypothetical protein VpsJ	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylmannosaminyltransferase (EC 2.4.1.187)	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
RbmA protein	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hypothetical protein RbmB	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hemolysin-related protein RbmC	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
RbmD, similar to Lipid A core - O-antigen ligase and related enzymes	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hypothetical protein RbmF	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hypothetical protein VpsP	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hypothetical protein VpsQ	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hemolysin-related protein Vcp	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Hypothetical protein RbmE	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
carbon monoxide dehydrogenase D protein	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon monoxide dehydrogenase F protein	CBSS-314269.3.peg.1840	Clustering-based subsystems	
carbon monoxide dehydrogenase E protein	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Uncharacterized MobA-related protein	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon-monoxide dehydrogenase form II, large subunit (EC 1.2.99.2)	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Transcription regulator in CO-DH cluster	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon monoxide dehydrogenase large chain (EC 1.2.99.2) parolog without usual motifs	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon monoxide dehydrogenase large chain (EC 1.2.99.2) without typical motifs	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Carbon monoxide dehydrogenase large chain (EC 1.2.99.2)	CBSS-314269.3.peg.1840	Clustering-based subsystems	
carbon monoxide dehydrogenase operon C protein	CBSS-314269.3.peg.1840	Clustering-based subsystems	
Phenazine biosynthesis protein PhzA	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine biosynthesis protein PhzB	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine biosynthesis protein PhzC	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine biosynthesis protein PhzD	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine biosynthesis protein PhzE	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine biosynthesis protein PhzF	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine biosynthesis protein PhzG	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine-specific methyltransferase PhzM	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
FAD-dependent monooxygenase PhzS	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine modifying protein PhzH	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
QscR quorum-sensing control repressor	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Phenazine biosynthesis protein PhzF like	Phenazine_biosynthesis	Secondary Metabolism	Bacterial cytostatics, differentiation factors and antibiotics
Cadmium-transporting ATPase (EC 3.6.3.3)	Cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cadmium efflux system accessory protein	Cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cadmium resistance protein	Cadmium_resistance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
DNA-binding response regulator PetR	CBSS-272943.3.peg.2468	Experimental Subsystems	
HTH-type transcriptional regulator PetP	CBSS-272943.3.peg.2468	Experimental Subsystems	
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	CBSS-272943.3.peg.2468	Experimental Subsystems	
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	CBSS-272943.3.peg.2468	Experimental Subsystems	
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	CBSS-272943.3.peg.2468	Experimental Subsystems	
Predicted secretion system W protein GspE-like	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W protein GspF-like	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W protein GspG-like	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W protein GspG-like 2	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W transmembrane protein 1	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W ATPase PilM-like	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W protein PilO-like	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W hypothetical protein	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Predicted secretion system W protein GspD-like	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Dolichol-phosphate mannosyltransferase (EC 2.4.1.83)	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Cell division protein FtsX	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Carboxyl-terminal protease (EC 3.4.21.102)	Predicted_secretion_system_W_clustering_with_cell_division_proteins	Clustering-based subsystems	
Inner membrane protein YjgN	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
Protein YjgF, putative endoribonuclease L-PSP	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
Protein YjgK, linked to biofilm formation	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
Protein YjgL, putative CCAAT-box DNA binding protein subunit B	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
Putative HTH-type transcriptional regulator YjgJ, TetR family	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
UPF0076 protein YjgH	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
Uncharacterized acetyltransferase YjgM (EC 2.3.1.-)	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
Uncharacterized oxidoreductase YjgI (EC 1.-.-.-)	Protein_YjgK_cluster_linked_to_biofilm_formation	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-)	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
LsrR, transcriptional repressor of lsr operon	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-)	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
S-ribosylhomocysteine lyase (EC 4.4.1.21)	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 (AI-2) modifying protein LsrG	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2-binding periplasmic protein LuxP precursor	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
Autoinducer 2 sensor kinase/phosphatase LuxQ (EC 2.7.3.-) (EC 3.1.3.-)	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	Regulation and Cell signaling	Quorum sensing and biofilm formation
GDP-mannose 4,6-dehydratase (EC 4.2.1.47)	Perosamine_Synthesis_Vibrio	Cell Wall and Capsule	Gram-Negative cell wall components
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)	Perosamine_Synthesis_Vibrio	Cell Wall and Capsule	Gram-Negative cell wall components
O-antigen export system, ATP-binding protein	Perosamine_Synthesis_Vibrio	Cell Wall and Capsule	Gram-Negative cell wall components
O-antigen export system, permease protein	Perosamine_Synthesis_Vibrio	Cell Wall and Capsule	Gram-Negative cell wall components
O-antigen export system, polymerase or transferase	Perosamine_Synthesis_Vibrio	Cell Wall and Capsule	Gram-Negative cell wall components
Phosphomannomutase (EC 5.4.2.8)	Perosamine_Synthesis_Vibrio	Cell Wall and Capsule	Gram-Negative cell wall components
Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHI, alpha subunit	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHI, beta subunit	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, alpha subunit A	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, beta subunit A	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, alpha subunit B	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, beta subunit B	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, alpha subunit C	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, beta subunit C	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, alpha subunit D	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, beta subunit D	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, alpha subunit E	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, beta subunit E	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, alpha subunit F	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, beta subunit F	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, alpha subunit G	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
Light-harvesting LHII, beta subunit G	Bacterial_light-harvesting_proteins	Photosynthesis	Light-harvesting complexes
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	CBSS-211586.1.peg.2832	Clustering-based subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	CBSS-211586.1.peg.2832	Clustering-based subsystems	
Preprotein translocase subunit YajC (TC 3.A.5.1.1)	CBSS-211586.1.peg.2832	Clustering-based subsystems	
Protein-export membrane protein SecD (TC 3.A.5.1.1)	CBSS-211586.1.peg.2832	Clustering-based subsystems	
Protein-export membrane protein SecF (TC 3.A.5.1.1)	CBSS-211586.1.peg.2832	Clustering-based subsystems	
Extracellular deoxyribonuclease Dns (EC 3.1.21.-)	Natural_DNA_Transformation_in_Vibrio	DNA Metabolism	DNA uptake, competence
Extracellular deoxyribonuclease Xds	Natural_DNA_Transformation_in_Vibrio	DNA Metabolism	DNA uptake, competence
Positive regulator of competence TfoX	Natural_DNA_Transformation_in_Vibrio	DNA Metabolism	DNA uptake, competence
Conserved protein YghT, with nucleoside triphosphate hydrolase domain	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Conserved ATP-binding protein YghS	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Conserved protein YghR, with nucleoside triphosphate hydrolase domain	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Inner membrane protein YghQ, probably involved in polysaccharide biosynthesis	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Conserved hypothetical TPR repeat protein, clustered with yghQ	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Transcriptional regulator, YtfJ-family	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Permease Ygh-P1, YjgP/YjgQ family	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Permease Ygh-P2, YjgP/YjgQ family	Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis	Carbohydrates	
Multiple antibiotic resistance protein MarA	Commensurate_regulon_activation	Stress Response	
Right origin-binding protein	Commensurate_regulon_activation	Stress Response	
Regulatory protein SoxS	Commensurate_regulon_activation	Stress Response	
Transcriptional regulator YkgA	Commensurate_regulon_activation	Stress Response	
Transcriptional activator RamA	Commensurate_regulon_activation	Stress Response	
Phosphoenolpyruvate synthase (EC 2.7.9.2)	A_Hypothetical_that_Clusters_with_PEP_Synthase	Clustering-based subsystems	
FIG137360: hypothetical protein	A_Hypothetical_that_Clusters_with_PEP_Synthase	Clustering-based subsystems	
Homocitrate synthase (EC 2.3.3.14)	Homocitrate_to_2-oxoadipate_module	Experimental Subsystems	
Homoaconitase large subunit (EC 4.2.1.36)	Homocitrate_to_2-oxoadipate_module	Experimental Subsystems	
Homoaconitase small subunit (EC 4.2.1.36)	Homocitrate_to_2-oxoadipate_module	Experimental Subsystems	
Homoisocitrate dehydrogenase (EC 1.1.1.87)	Homocitrate_to_2-oxoadipate_module	Experimental Subsystems	
Alpha-aminoadipate aminotransferase (EC 2.6.1.39)	Homocitrate_to_2-oxoadipate_module	Experimental Subsystems	
Homoaconitase (EC 4.2.1.36)	Homocitrate_to_2-oxoadipate_module	Experimental Subsystems	
Putative membrane protein YeiH	YeiH	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
LysR family transcriptional regulator YeiE	YeiH	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Lysine-specific permease	YeiH	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
DNA binding protein HpkR	YeiH	Clustering-based subsystems	Lysine, threonine, methionine, and cysteine
Glycine reductase component B alpha subunit (EC 1.21.4.2)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Glycine reductase component B beta subunit (EC 1.21.4.2)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Glycine reductase component B gamma subunit (EC 1.21.4.2)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Sarcosine reductase component B alpha subunit (EC 1.21.4.3)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Sarcosine reductase component B beta subunit (EC 1.21.4.3)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Glycine/sarcosine/betaine reductase protein A	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Glycine/sarcosine/betaine reductase component C chain 1	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Glycine/sarcosine/betaine reductase component C chain 2	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Thioredoxin	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Thioredoxin reductase (EC 1.8.1.9)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Betaine reductase component B alpha subunit (EC 1.21.4.4)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Betaine reductase component B beta subunit (EC 1.21.4.4)	Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	Protein Metabolism	Selenoproteins
Fucose permease	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
Alpha-L-fucosidase (EC 3.2.1.51)	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
Possible alternative L-fucose mutarotase	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
L-fuco-beta-pyranose dehydrogenase	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
L-fuconolactone hydrolase	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
L-fuconate dehydratase (EC 4.2.1.68)	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
2-keto-3-deoxy-L-fuconate dehydrogenase	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
2,4-diketo-3-deoxy-L-fuconate hydrolase	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
dehydrogenase clustered with L-fuconate utilization genes	L-fucose_utilization_temp	Carbohydrates	Monosaccharides
Suppression of copper sensitivity: putative copper binding protein ScsA	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Membrane protein, suppressor for copper-sensitivity ScsB	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Secreted protein, suppressor for copper-sensitivity ScsC	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Membrane protein, suppressor for copper-sensitivity ScsD	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Periplasmic divalent cation tolerance protein cutA	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cytoplasmic copper homeostasis protein cutC	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper homeostasis protein CutE	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Magnesium and cobalt efflux protein CorC	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Copper homeostasis protein CutF precursor	Copper_homeostasis:_copper_tolerance	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
programmed frameshift-containing	Programmed_frameshift	Protein Metabolism	Protein biosynthesis
Peptide chain release factor 2	Programmed_frameshift	Protein Metabolism	Protein biosynthesis
Peptide chain release factor 2 unshifted fragment	Programmed_frameshift	Protein Metabolism	Protein biosynthesis
RecA protein	DNA_repair,_bacterial_UmuCD_system	DNA Metabolism	DNA repair
SOS-response repressor and protease LexA (EC 3.4.21.88)	DNA_repair,_bacterial_UmuCD_system	DNA Metabolism	DNA repair
Single-stranded DNA-binding protein	DNA_repair,_bacterial_UmuCD_system	DNA Metabolism	DNA repair
Error-prone, lesion bypass DNA polymerase V (UmuC)	DNA_repair,_bacterial_UmuCD_system	DNA Metabolism	DNA repair
Error-prone repair protein UmuD	DNA_repair,_bacterial_UmuCD_system	DNA Metabolism	DNA repair
FIG036672: Nucleoside-diphosphate-sugar epimerase	CBSS-280355.3.peg.2323	Clustering-based subsystems	
3-oxoacyl-(acyl carrier protein) synthase (EC 2.3.1.41)	CBSS-280355.3.peg.2323	Clustering-based subsystems	
FIG003671: Metal-dependent hydrolase	CBSS-280355.3.peg.2323	Clustering-based subsystems	
Adenylate-forming enzyme	CBSS-280355.3.peg.2323	Clustering-based subsystems	
Cell division initiation protein DivIVA	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
Cell division protein FtsQ	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
Cell division protein FtsZ (EC 3.4.24.-)	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
Cell division protein YlmG/Ycf19 (putative), YggT family	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
FIG001583: hypothetical protein, contains S4-like RNA binding domain	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
FIG001960: FtsZ-interacting protein related to cell division	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
Cell division protein FtsA	Cell_Division_Cluster	Clustering-based subsystems	Cell Division
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	Deaminase	Experimental Subsystems	
Cytidine deaminase (EC 3.5.4.5)	Deaminase	Experimental Subsystems	
dCMP deaminase (EC 3.5.4.12)	Deaminase	Experimental Subsystems	
Phenylalanyl-tRNA synthetase domain protein (Bsu YtpR)	Deaminase	Experimental Subsystems	
Cytosine deaminase (EC 3.5.4.1)	Deaminase	Experimental Subsystems	
tRNA binding domain protein	Deaminase	Experimental Subsystems	
Similar to ribosomal protein L11p	Ribosomal_protein_paralogs	Protein Metabolism	Protein biosynthesis
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
3-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Electron transfer flavoprotein, alpha subunit	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Electron transfer flavoprotein, beta subunit	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Enoyl-CoA hydratase (EC 4.2.1.17)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Acetoacetate metabolism regulatory protein AtoC	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Ferredoxin-like protein FixX	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Ferredoxin-like protein YgcO	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Butyrate kinase (EC 2.7.2.7)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
phosphotransbutyrylase (EC 2.3.1.19)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Ferredoxin-like protein	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9)	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Ferredoxin-like protein YdiT	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	Fermentation
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	A_Hypothetical_Protein_Related_to_Proline_Metabolism	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	A_Hypothetical_Protein_Related_to_Proline_Metabolism	Amino Acids and Derivatives	Proline and 4-hydroxyproline
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Catechol 1,2-dioxygenase (EC 1.13.11.1)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Muconate cycloisomerase (EC 5.5.1.1)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Muconolactone isomerase (EC 5.3.3.4)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
mandelate racemase/muconate lactonizing enzyme family protein	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Catechol 1,2-dioxygenase 1 (EC 1.13.11.1)	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Muconolactone isomerase (EC 5.3.3.4),putative	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3-oxoadipate enol-lactone hydrolase	Catechol_branch_of_beta-ketoadipate_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Maltogenic alpha-amylase (EC 3.2.1.133)	Pullulan_degrading_enzymes_and_Amylases_of_archaeal_and_bacterial_origin	Experimental Subsystems	Polysaccharides
(R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-)	Rhamnolipids_in_Pseudomonas	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
N-acyl-L-homoserine lactone synthetase RhlL	Rhamnolipids_in_Pseudomonas	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase RhlG (EC 1.1.1.100)	Rhamnolipids_in_Pseudomonas	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
RhlA, 3-(3-hydroxyalkanoyloxy)alkanoic acids (HAAs) synthase	Rhamnolipids_in_Pseudomonas	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
RhlB, TDP-rhamnosyltransferase 1 (EC 2.4.1.-)	Rhamnolipids_in_Pseudomonas	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
RhlC, TDP-rhamnosyltransferase 2 (EC 2.4.1.-)	Rhamnolipids_in_Pseudomonas	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Transcriptional regulator RhlR	Rhamnolipids_in_Pseudomonas	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
S-adenosylmethionine synthetase (EC 2.5.1.6)	Quorum_Sensing:_Autoinducer-2_Synthesis	Regulation and Cell signaling	Quorum sensing and biofilm formation
MCP-domain signal transduction protein	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Cytochrome C551 peroxidase (EC 1.11.1.5)	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
RNA polymerase sigma factor for flagellar operon	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Predicted signal transduction protein	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Flagellar motor rotation protein MotB	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Flagellar motor rotation protein MotA	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
RNA polymerase sigma-54 factor RpoN	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Phosphate acetyltransferase (EC 2.3.1.8)	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Rrf2 family transcriptional regulator	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Putative amino-acid transport protein	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
acyl-acyl carrier protein synthetase (EC 6.2.1.20)	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Alpha-1,4-N-acetylgalactosamine transferase PglH (EC 2.4.1.-)	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Flagellar biosynthesis protein FliR	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Flagellar hook-associated protein FlgK	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Paralysed flagella protein PflA	C_jejuni_colonization_of_chick_caeca	Virulence, Disease and Defense	
Polysaccharide deacetylase, caspase activity	Bacterial_Caspases	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB11	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex, VirB4	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Coupling protein VirD4, ATPase required for T-DNA transfer	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Inner membrane protein of type IV secretion of T-DNA complex, TonB-like, VirB10	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Inner membrane protein of type IV secretion of T-DNA complex, VirB3	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Inner membrane protein of type IV secretion of T-DNA complex, VirB6	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Inner membrane protein of type IV secretion of T-DNA complex, VirB8	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Major pilus subunit of type IV secretion complex, VirB2	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Minor pilin of type IV secretion complex, VirB5	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Outer membrane and periplasm component of type IV secretion of T-DNA complex, has secretin-like domain, VirB9	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Peptidoglycan hydrolase VirB1, involved in T-DNA transfer	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Plant-inducible protein PinF1, cytochrome P450-like, contributes to virulence	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Plant-inducible protein PinF2, cytochrome P450-like, contributes to virulence	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Protein VirD5 in virD operon	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Protein VirF secreted into plant cell during T-DNA transfer	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
RHH DNA-binding protein VirC2, promotes T-DNA transfer	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
T-DNA border endonuclease VirD2, RP4 TraG-like relaxase	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
T-DNA border endonuclease, VirD1	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Two-component response regulator of vir regulon, VirG	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Two-component sensor kinase of vir regulon, VirA	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
VirC1 protein promotes T-DNA transfer, ParA/MinD-like	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
VirD3 protein	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
VirE0 protein, induced by VirAG signaling system	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
VirE2 involved in nuclear transport of T-DNA, single-strand DNA binding protein	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
VirE3 involved in nuclear transport of T-DNA, potential plant transcriptional activator	Plasmid-encoded_T-DNA_transfer	Phages, Prophages, Transposable elements, Plasmids	Plasmid related functions
Outer membrane protein H precursor	Outer_membrane	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein assembly factor YaeT precursor	Outer_membrane	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein A precursor	Outer_membrane	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein C precursor	Outer_membrane	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein F precursor	Outer_membrane	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein G precursor	Outer_membrane	Cell Wall and Capsule	Gram-Negative cell wall components
AMP phosphohydrolase	AMP_to_3-phosphoglycerate	Nucleosides and Nucleotides	
Ribose-1,5-bisphosphate isomerase	AMP_to_3-phosphoglycerate	Nucleosides and Nucleotides	
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39)	AMP_to_3-phosphoglycerate	Nucleosides and Nucleotides	
ADP-dependent glucokinase (EC 2.7.1.147)	AMP_to_3-phosphoglycerate	Nucleosides and Nucleotides	
ADP-dependent phosphofructokinase (EC 2.7.1.146)	AMP_to_3-phosphoglycerate	Nucleosides and Nucleotides	
Ribulose bisphosphate carboxylase (EC 4.1.1.39)	AMP_to_3-phosphoglycerate	Nucleosides and Nucleotides	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Sepiapterin reductase (EC 1.1.1.153)	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
UDP-glucose:tetrahydrobiopterin glucosyltransferase [EC:2.4.1.-]	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteridine reductase (EC 1.5.1.34)	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aldo-keto reductase family 1 member B10 (EC 1.1.1.-)	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aldo-keto reductase family 1, member C3 (EC 1.1.1.-)	Pterin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Siderophore staphylobactin ABC transporter, substrate-binding protein SirA	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin ABC transporter, permease protein SirB	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin ABC transporter, permease protein SirC	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnA	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnB	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnC	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnD	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnE	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnF	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnG	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnH	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin biosynthesis protein SbnI	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin ABC transporter, substrate-binding protein SirA, putative	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin ABC transporter, permease protein SirB, putative	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin ABC transporter, permease protein SirC, putative	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
Siderophore staphylobactin ABC transporter, ATP-binding protein, putative	Siderophore_Staphylobactin	Iron acquisition and metabolism	Siderophores
FIG014387: Transcriptional regulator, PadR family	CBSS-218494.4.peg.228	Clustering-based subsystems	
FIG04612: Integral membrane protein (putative)	CBSS-218494.4.peg.228	Clustering-based subsystems	
FIG015389: hypothetical membrane associated protein	CBSS-218494.4.peg.228	Clustering-based subsystems	
15,16-dihydrobiliverdin:ferredoxin oxidoreductase PebA (EC 1.3.7.2)	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Bilin biosynthesis protein CpeY	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Bilin biosynthesis protein CpeZ	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Bilin biosynthesis protein MpeU	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Biliverdin reductase (EC 1.3.1.24)	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme oxygenase (EC 1.14.99.3)	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Phycocyanobilin lyase alpha subunit	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Phycocyanobilin lyase beta subunit	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Phycocyanobilin:ferredoxin oxidoreductase PcyA (EC 1.3.7.5)	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Phycoerythrobilin:ferredoxin oxidoreductase PebB (EC 1.3.7.3)	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Bilin biosynthesis protein PecE	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Bilin biosynthesis protein PecF	Bilin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB	Rcs_phosphorelay_signal_transduction_pathway	Regulation and Cell signaling	
Two-component sensor protein RcsD (EC 2.7.3.-)	Rcs_phosphorelay_signal_transduction_pathway	Regulation and Cell signaling	
DNA-binding capsular synthesis response regulator RcsB	Rcs_phosphorelay_signal_transduction_pathway	Regulation and Cell signaling	
Two-component sensor protein RcsC (EC 2.7.3.-)	Rcs_phosphorelay_signal_transduction_pathway	Regulation and Cell signaling	
Protein RcsF	Rcs_phosphorelay_signal_transduction_pathway	Regulation and Cell signaling	
DnaJ-like protein DjlA	Rcs_phosphorelay_signal_transduction_pathway	Regulation and Cell signaling	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	luxHR_LAO_2	Experimental Subsystems	
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	luxHR_LAO_2	Experimental Subsystems	
acyl-CoA synthase	luxHR_LAO_2	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
Transport ATP-binding protein CydC	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
Transport ATP-binding protein CydD	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
putative Cytochrome bd2, subunit I	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
putative Cytochrome bd2, subunit II	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
Transport ATP-binding protein CydCD	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
cytochrome oxidase,subunit I (cydA-1)	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
Hypothetical bd-type Menaquinol oxidase subunit	Terminal_cytochrome_d_ubiquinol_oxidases	Respiration	Electron accepting reactions
Quinohemoprotein amine dehydrogenase gamma subunit (EC 1.4.99.-)	Quinohemoprotein_amine_dehydrogenase_maturation	Protein Metabolism	Protein processing and modification
Quinohemoprotein amine dehydrogenase radical SAM maturase	Quinohemoprotein_amine_dehydrogenase_maturation	Protein Metabolism	Protein processing and modification
Quinohemoprotein amine dehydrogenase alpha subunit (EC 1.4.99.-)	Quinohemoprotein_amine_dehydrogenase_maturation	Protein Metabolism	Protein processing and modification
Quinohemoprotein amine dehydrogenase beta subunit (EC 1.4.99.-)	Quinohemoprotein_amine_dehydrogenase_maturation	Protein Metabolism	Protein processing and modification
Peptide transport periplasmic protein SapA	Peptide_ABC_transport_system_Sap	Membrane Transport	ABC transporters
Peptide transport system permease protein SapB	Peptide_ABC_transport_system_Sap	Membrane Transport	ABC transporters
Peptide transport system permease protein SapC	Peptide_ABC_transport_system_Sap	Membrane Transport	ABC transporters
Peptide transport system ATP-binding protein SapD	Peptide_ABC_transport_system_Sap	Membrane Transport	ABC transporters
Peptide transport system ATP-binding protein SapF	Peptide_ABC_transport_system_Sap	Membrane Transport	ABC transporters
MSHA biogenesis protein MshH	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshI	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshJ	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshK	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshL	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshM	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshN	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshE	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshG	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshF	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA pilin protein MshB	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA pilin protein MshA	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA pilin protein MshC	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA pilin protein MshD	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshO	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshP	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshQ	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshK2	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshF2	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
MSHA biogenesis protein MshK3	Mannose-sensitive_hemagglutinin_type_4_pilus	Membrane Transport	Protein and nucleoprotein secretion system, Type IV
Transcriptional regulator, LysR family	CBSS-349102.4.peg.3442	Clustering-based subsystems	
Sodium - Bile acid symporter	CBSS-349102.4.peg.3442	Clustering-based subsystems	
Signal transduction histidine kinase CitA regulating citrate metabolism	Citrate_Utilization_System_(CitAB,_CitH,_and_tctABC)	Membrane Transport	
Response regulator CitB of citrate metabolism	Citrate_Utilization_System_(CitAB,_CitH,_and_tctABC)	Membrane Transport	
TctC citrate transporter	Citrate_Utilization_System_(CitAB,_CitH,_and_tctABC)	Membrane Transport	
TctB citrate transporter	Citrate_Utilization_System_(CitAB,_CitH,_and_tctABC)	Membrane Transport	
TctA citrate transporter	Citrate_Utilization_System_(CitAB,_CitH,_and_tctABC)	Membrane Transport	
CitH citrate transporter	Citrate_Utilization_System_(CitAB,_CitH,_and_tctABC)	Membrane Transport	
Phosphosulfolactate synthase (EC 4.4.1.19)	coenzyme_M_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
2-phosphosulfolactate phosphatase (EC 3.1.3.71)	coenzyme_M_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
L-sulfolactate dehydrogenase (EC 1.1.1.272)	coenzyme_M_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79)	coenzyme_M_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79)	coenzyme_M_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme M
Putative C1 regulatory protein	Frankia_C1_regulator	Experimental Subsystems	
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Frankia_C1_regulator	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	Frankia_C1_regulator	Experimental Subsystems	
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	Frankia_C1_regulator	Experimental Subsystems	
COG0354: Predicted aminomethyltransferase related to GcvT	Frankia_C1_regulator	Experimental Subsystems	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Frankia_C1_regulator	Experimental Subsystems	
ATPase component NikO of energizing module of nickel ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Additional component NikL of nickel ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Additional periplasmic component NikK of nickel ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Substrate-specific component NikM of nickel ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
HupE-UreJ family metal transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
ATPase component CbiO of energizing module of cobalt ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Additional substrate-specific component CbiN of cobalt ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Additional substrate-specific component NikN of nickel ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel responsive regulator NikR	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Substrate-specific component CbiM of cobalt ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Transmembrane component CbiQ of energizing module of cobalt ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Transmembrane component NikQ of energizing module of nickel ECF transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
HoxN/HupN/NixA family nickel/cobalt transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport system permease protein NikB (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport system permease protein NikC (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nicel/Cobalt-specific TonB-dependent outer membrane receptor	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Predicted cobalt transporter CbtC	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Predicted cobalt transporter CbtA	Transport_of_Nickel_and_Cobalt	Membrane Transport	
HoxN/HupN/NixA family cobalt transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Predicted cobalt ABC transporter periplasmic component	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Predicted cobalt transporter in Mycobacteria	Transport_of_Nickel_and_Cobalt	Membrane Transport	
HupE-UreJ family cobalt transporter	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transporter UreH	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport ATP-binding protein nikD2 (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport ATP-binding protein nikE2 (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)	Transport_of_Nickel_and_Cobalt	Membrane Transport	
FIG010427: hypothetical protein	CBSS-345074.3.peg.1627	Clustering-based subsystems	disambiguate cysteine desulferases
CBSS-345074.3.peg.1627: Cysteine desulfurase (EC 2.8.1.7)	CBSS-345074.3.peg.1627	Clustering-based subsystems	disambiguate cysteine desulferases
Tricarboxylate transport membrane protein TctA	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
Putative tricarboxylic transport TctC	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
Sensor kinase CitA, DpiB (EC 2.7.3.-)	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
Two-component sensor histidine kinase, malate (EC 2.7.3.-)	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
putative tricarboxylic transport TctB	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
two-component response regulator	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
ABC-type amino acid transport, signal transduction systems, periplasmic component/domain	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
Two-component response regulator	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
Two-component system regulatory protein	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
Sensor protein PhoQ (EC 2.7.13.3)	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
sensor histidine kinase	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
Two-component response regulator, malate (EC 2.7.3.-)	CBSS-314288.3.peg.1460	Clustering-based subsystems	Tricarboxilate (malonate, propionate?) transport
carbon monoxide dehydrogenase D protein	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon monoxide dehydrogenase F protein	CO_Dehydrogenase	Respiration	Electron donating reactions
carbon monoxide dehydrogenase E protein	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)	CO_Dehydrogenase	Respiration	Electron donating reactions
carbon monoxide dehydrogenase G protein	CO_Dehydrogenase	Respiration	Electron donating reactions
CO dehydrogenases maturation factor, CoxF family	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon-monoxide dehydrogenase form II, large subunit (EC 1.2.99.2)	CO_Dehydrogenase	Respiration	Electron donating reactions
Uncharacterized MobA-related protein	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )	CO_Dehydrogenase	Respiration	Electron donating reactions
Transcription regulator in CO-DH cluster	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon monoxide dehydrogenase large chain (EC 1.2.99.2) without typical motifs	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon monoxide dehydrogenase large chain (EC 1.2.99.2) parolog without usual motifs	CO_Dehydrogenase	Respiration	Electron donating reactions
Carbon monoxide dehydrogenase large chain (EC 1.2.99.2)	CO_Dehydrogenase	Respiration	Electron donating reactions
Hypothetical lactonase in carbon monoxide dehydrogenase cluster	CO_Dehydrogenase	Respiration	Electron donating reactions
carbon monoxide dehydrogenase operon C protein	CO_Dehydrogenase	Respiration	Electron donating reactions
Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	CBSS-188.1.peg.9880	Clustering-based subsystems	Three hypotheticals linked to lipoprotein biosynthesis
COG1496: Uncharacterized conserved protein	CBSS-188.1.peg.9880	Clustering-based subsystems	Three hypotheticals linked to lipoprotein biosynthesis
COG1565: Uncharacterized conserved protein	CBSS-188.1.peg.9880	Clustering-based subsystems	Three hypotheticals linked to lipoprotein biosynthesis
FIG018229: hypothetical protein	CBSS-188.1.peg.9880	Clustering-based subsystems	Three hypotheticals linked to lipoprotein biosynthesis
tRNA pseudouridine 55 synthase Archaea	COG1901	RNA Metabolism	RNA processing and modification
N1-specific pseudouridine methyltransferase TrmY, biosynthesis of m1psi in tRNA at position 54 in Archaea	COG1901	RNA Metabolism	RNA processing and modification
tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)	COG1901	RNA Metabolism	RNA processing and modification
tRNA(U54)-2-thioribothymidine synthetase	COG1901	RNA Metabolism	RNA processing and modification
N1-specific pseudouridine methyltransferase NEP1, biosynthesis of m1acp3-psi in 18S/16S rRNA in Eukaryotes and Archaea	COG1901	RNA Metabolism	RNA processing and modification
Pus10-like	COG1901	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase B (EC 4.2.1.70)	COG1901	RNA Metabolism	RNA processing and modification
protein of unknown function DUF358	COG1901	RNA Metabolism	RNA processing and modification
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	Carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	Carboxysome	Carbohydrates	CO2 fixation
Carbonic anhydrase (EC 4.2.1.1)	Carboxysome	Carbohydrates	CO2 fixation
Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54)	Carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmL	Carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmM	Carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmN	Carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase (EC 1.6.99.3)	Carboxysome	Carbohydrates	CO2 fixation
High-affnity carbon uptake protein Hat/HatR	Carboxysome	Carbohydrates	CO2 fixation
6-Methyl salicylic acid synthase	Salicylic_acid_biosynthesis1	Secondary Metabolism	Biosynthesis of phenylpropanoids
S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein	Salicylic_acid_biosynthesis1	Secondary Metabolism	Biosynthesis of phenylpropanoids
Antigen 85-A precursor (85A) (Antigen 85 complex A) (Ag85A) (Mycolyl transferase 85A) (EC 2.3.1.-)	CBSS-83332.1.peg.3803	Clustering-based subsystems	
Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-)	CBSS-83332.1.peg.3803	Clustering-based subsystems	
Probable acyl-CoA dehydrogenase fadE35 (EC 1.3.99.-)	CBSS-83332.1.peg.3803	Clustering-based subsystems	
Probable polyketide synthase, similar to many. e.g. gp|M63676|SERERYAA_1 S.erythraea first ORF of eryA gene, involved in complex polyketide formation in erythromycin biosynthesis.	CBSS-83332.1.peg.3803	Clustering-based subsystems	
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	CBSS-83332.1.peg.3803	Clustering-based subsystems	
Transposase for insertion sequence element IS1557	CBSS-83332.1.peg.3803	Clustering-based subsystems	
fatty-acid-CoA ligase FadD32	CBSS-83332.1.peg.3803	Clustering-based subsystems	
hypothetical protein Rv3802c	CBSS-83332.1.peg.3803	Clustering-based subsystems	
hypothetical protein Rv3805c	CBSS-83332.1.peg.3803	Clustering-based subsystems	
Antigen 85-B precursor (85B) (Extracellular alpha-antigen) (Antigen 85 complex B) (Ag85B) (Mycolyl transferase 85B) (EC 2.3.1.-)	CBSS-83332.1.peg.3803	Clustering-based subsystems	
FUPA28 P-type ATPase	Family_28_FUPA28_P-type_ATPase		
Probable two-component response regulator with GGDEF domain	Family_28_FUPA28_P-type_ATPase		
Zinc uptake regulation protein ZUR	Family_28_FUPA28_P-type_ATPase		
11 TMS hypothetical protein	Family_28_FUPA28_P-type_ATPase		
Legionella-specific FUPA28-localized hypothetical protein	Family_28_FUPA28_P-type_ATPase		
TATA-box binding protein	RNA_polymerase_archaeal_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor B	RNA_polymerase_archaeal_initiation_factors	RNA Metabolism	Transcription
Archaeal transcription factor E	RNA_polymerase_archaeal_initiation_factors	RNA Metabolism	Transcription
Zinc finger, TFIIB-type domain protein	RNA_polymerase_archaeal_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor B-related protein	RNA_polymerase_archaeal_initiation_factors	RNA Metabolism	Transcription
Beta-lysine acetyltransferase (EC 2.3.1.-)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-lysine aminomutase regulator	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine 2,3-aminomutase (EC 5.4.3.2)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine decarboxylase (EC 4.1.1.18)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine decarboxylase 2, constitutive (EC 4.1.1.18)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine decarboxylase, inducible (EC 4.1.1.18)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine/cadaverine antiporter membrane protein CadB	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Transcriptional activator of cad operon	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-aminovalerate aminotransferase (EC 2.6.1.48)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-pipecolate dehydrogenase (EC 1.5.99.3)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-pipecolate oxidase (1.5.3.7)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Outer membrane porin, OprD family	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-aminopentanamidase (EC 3.5.1.30)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine 2-monooxygenase (EC 1.13.12.2)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-lysine permease	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC 1.5.1.7)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-aminoadipate-semialdehyde dehydrogenase large subunit (EC 1.2.1.31)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Saccharopine dehydrogenase [NADP , L-glutamate-forming] (EC 1.5.1.10)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Saccharopine dehydrogenase (EC 1.5.1.9)	Lysine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
ABC transport system, permease component YbhR	ATP-dependent_efflux_pump_transporter_Ybh	Membrane Transport	ABC transporters
ABC transport system, permease component YbhS	ATP-dependent_efflux_pump_transporter_Ybh	Membrane Transport	ABC transporters
ABC transporter multidrug efflux pump, fused ATP-binding domains	ATP-dependent_efflux_pump_transporter_Ybh	Membrane Transport	ABC transporters
Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG	ATP-dependent_efflux_pump_transporter_Ybh	Membrane Transport	ABC transporters
Transcriptional regulator YbiH, TetR family	ATP-dependent_efflux_pump_transporter_Ybh	Membrane Transport	ABC transporters
FIG086515: Hypothetical protein	CBSS-316273.3.peg.922	Clustering-based subsystems	
Integral membrane protein CcmA involved in cell shape determination	CBSS-316273.3.peg.922	Clustering-based subsystems	
probable iron binding protein from the HesB_IscA_SufA family	CBSS-316273.3.peg.922	Clustering-based subsystems	
FIG034602: Probable transmembrane protein	CBSS-316273.3.peg.922	Clustering-based subsystems	
FIG035830: Two-component system regulatory protein	CBSS-316273.3.peg.922	Clustering-based subsystems	
FIG037127: Two-component system sensor protein	CBSS-316273.3.peg.922	Clustering-based subsystems	
Cell wall-associated murein hydrolase LytA	Fratricide_in_Streptococcus	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Choline binding protein D	Fratricide_in_Streptococcus	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Two-peptide bacteriocin peptide CibA	Fratricide_in_Streptococcus	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Two-peptide bacteriocin peptide CibB	Fratricide_in_Streptococcus	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Immunity factor CibC	Fratricide_in_Streptococcus	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Immunity factor ComM	Fratricide_in_Streptococcus	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Cell wall-associated murein hydrolase LytC	Fratricide_in_Streptococcus	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
1,4-alpha-glucan branching enzyme (EC 2.4.1.18)	Cellulosome	Carbohydrates	Polysaccharides
Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135)	Cellulosome	Carbohydrates	Polysaccharides
Alpha-glucosidase SusB (EC 3.2.1.20)	Cellulosome	Carbohydrates	Polysaccharides
Clostridium cellulosome enzyme, dockerin type I precursor	Cellulosome	Carbohydrates	Polysaccharides
Regulatory protein SusR	Cellulosome	Carbohydrates	Polysaccharides
SusC, outer membrane protein involved in starch binding	Cellulosome	Carbohydrates	Polysaccharides
SusD, outer membrane protein	Cellulosome	Carbohydrates	Polysaccharides
Alpha-amylase SusG (EC 3.2.1.1)	Cellulosome	Carbohydrates	Polysaccharides
Outer membrane protein SusE	Cellulosome	Carbohydrates	Polysaccharides
Outer membrane protein SusF	Cellulosome	Carbohydrates	Polysaccharides
type 1 fimbrae adaptor subunit FimF	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
type 1 fimbrae adaptor subunit FimG	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
mannose-specific adhesin FimH	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
chaperone FimC	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
type 1 fimbriae anchoring protein FimD	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
type 1 fimbriae major subunit FimA	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
type 1 fimbriae protein FimI, unknown function	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
type 1 fimbriae regulatory protein FimB	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
type 1 fimbriae regulatory protein FimE	Type_1_pili_(mannose-sensitive_fimbriae)	Virulence	Adhesion
Glycerate kinase (EC 2.7.1.31)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
D-glycerate transporter (predicted)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
Sugar diacid utilization regulator SdaR	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
D-galactarate dehydratase (EC 4.2.1.42)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
Glucarate dehydratase (EC 4.2.1.40)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
D-glucarate permease	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
Predicted 5-dehydro-4-deoxyglucarate regulator YcbG	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
D-glycerate 2-kinase (EC 2.7.1.-)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
D-galactarate permease	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
Predicted D-glucarate or D-galactorate regulator, GntR family	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
Predicted D-glucarate or D-galactorate regulator, IclR family	D-galactarate,_D-glucarate_and_D-glycerate_catabolism	Carbohydrates	Monosaccharides
Predicted signal-transduction protein containing cAMP-binding and CBS domains	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
DNA polymerase III epsilon subunit (EC 2.7.7.7)	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
Ribonuclease HI (EC 3.1.26.4)	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-)	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
FIG004599: Hypothetical protein	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
SAM-dependent methyltransferase (EC 2.1.1.-)	CBSS-342610.3.peg.1536	Clustering-based subsystems	DNA polymerase III epsilon cluster
SSU ribosomal protein S14e (S11p)	eukaryotic_rRNA_modification_and_related_functions	RNA Metabolism	RNA processing and modification
Collagen alpha 1(I) chain precursor	eukaryotic_rRNA_modification_and_related_functions	RNA Metabolism	RNA processing and modification
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Sphingolipid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
3-dehydrosphinganine reductase (EC 1.1.1.102)	Sphingolipid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Acyl-CoA-dependent ceramide synthase (EC 2.3.1.24)	Sphingolipid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Putative fatty acid desaturase (EC 1.14.-.-)	Sphingolipid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Serine palmitoyltransferase (EC 2.3.1.50)	Sphingolipid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
DNA gyrase subunit A (EC 5.99.1.3)	DNA_gyrase_subunits	Clustering-based subsystems	
DNA gyrase subunit B (EC 5.99.1.3)	DNA_gyrase_subunits	Clustering-based subsystems	
Phosphoesterase, DHH family protein	CBSS-262719.3.peg.410	Clustering-based subsystems	Clustering-based subsystems
LSU ribosomal protein L9p	CBSS-262719.3.peg.410	Clustering-based subsystems	Clustering-based subsystems
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]	CBSS-262719.3.peg.410	Clustering-based subsystems	Clustering-based subsystems
FIG003573: hypothetical protein	CBSS-262719.3.peg.410	Clustering-based subsystems	Clustering-based subsystems
Adenylosuccinate synthetase (EC 6.3.4.4)	CBSS-262719.3.peg.410	Clustering-based subsystems	Clustering-based subsystems
DNA mismatch repair protein MutL	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
DNA mismatch repair protein MutS	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
Recombination inhibitory protein MutS2	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
MutS-related protein, family 1	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
MutS domain protein, family 2	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
Clostridial MutS2-related protein	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
MutS domain protein, family 6	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
MutS domain protein, family 5	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
MutS domain protein, family 4	DNA_repair,_bacterial_MutL-MutS_system	DNA Metabolism	DNA repair
Outer membrane protein/protective antigen OMA87	CBSS-316057.3.peg.659	Clustering-based subsystems	Probably Ybbk-related hypothetical membrane proteins
Polysialic acid capsule sugar isomerase, KpsF/GutQ family	CBSS-316057.3.peg.659	Clustering-based subsystems	Probably Ybbk-related hypothetical membrane proteins
Putative activity regulator of membrane protease YbbK	CBSS-316057.3.peg.659	Clustering-based subsystems	Probably Ybbk-related hypothetical membrane proteins
Putative stomatin/prohibitin-family membrane protease subunit YbbK	CBSS-316057.3.peg.659	Clustering-based subsystems	Probably Ybbk-related hypothetical membrane proteins
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	CBSS-269801.1.peg.1725	Clustering-based subsystems	
BH2577 unknown conserved protein in B. subtilis	CBSS-269801.1.peg.1725	Clustering-based subsystems	
S-adenosyl-methyltransferase MraW (EC 2.1.1.-)	CBSS-269801.1.peg.1725	Clustering-based subsystems	
Uncharacterized N-acetyltransferase BT9727_3663 (EC 2.3.1.-)	CBSS-269801.1.peg.1725	Clustering-based subsystems	
2-dehydropantoate 2-reductase (EC 1.1.1.169)	CBSS-269801.1.peg.1725	Clustering-based subsystems	
Penicillin-binding protein 2B	CBSS-269801.1.peg.1725	Clustering-based subsystems	
Stage V sporulation protein D (Sporulation-specific penicillin-binding protein)	CBSS-269801.1.peg.1725	Clustering-based subsystems	
Penicillin-binding protein 3	CBSS-269801.1.peg.1725	Clustering-based subsystems	
putative patatin-like phospholipase	CBSS-269801.1.peg.1725	Clustering-based subsystems	
5-nucleotidase SurE (EC 3.1.3.5)	CBSS-269801.1.peg.1725	Clustering-based subsystems	
Penicillin-binding protein 2 (PBP-2)	CBSS-269801.1.peg.1725	Clustering-based subsystems	
Chromate resistance protein ChrB	Resistance_to_chromium_compounds	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Chromate transport protein ChrA	Resistance_to_chromium_compounds	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Superoxide dismutase SodM-like protein ChrF	Resistance_to_chromium_compounds	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Chromate resistance protein ChrI	Resistance_to_chromium_compounds	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Rhodanese-like protein ChrE	Resistance_to_chromium_compounds	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Superoxide dismutase ChrC	Resistance_to_chromium_compounds	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
LSU rRNA	rRNAs	Protein Metabolism	Protein biosynthesis
SSU rRNA	rRNAs	Protein Metabolism	Protein biosynthesis
5S rRNA	rRNAs	Protein Metabolism	Protein biosynthesis
Putative stomatin/prohibitin-family membrane protease subunit YbbK	YbbK	Miscellaneous	
Putative activity regulator of membrane protease YbbK	YbbK	Miscellaneous	
Putative stomatin/prohibitin-family membrane protease subunit aq_911	YbbK	Miscellaneous	
Putative membrane-bound ClpP-class protease associated with aq_911	YbbK	Miscellaneous	
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Glutamine amidotransferase protein GlxB (EC 2.4.2.-)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Glutamine synthetase type I (EC 6.3.1.2)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Sarcosine oxidase alpha subunit (EC 1.5.3.1)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Sarcosine oxidase beta subunit (EC 1.5.3.1)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Sarcosine oxidase delta subunit (EC 1.5.3.1)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Sarcosine oxidase gamma subunit (EC 1.5.3.1)	Glutamate-mediated_methylamine_utilization_pathway	Carbohydrates	One-carbon Metabolism
Poly(A) polymerase (EC 2.7.7.19)	Polyadenylation_bacterial	RNA Metabolism	RNA processing and modification
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	Polyadenylation_bacterial	RNA Metabolism	RNA processing and modification
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	Polyadenylation_bacterial	RNA Metabolism	RNA processing and modification
RNA-binding protein Hfq	Polyadenylation_bacterial	RNA Metabolism	RNA processing and modification
tRNA nucleotidyltransferase, CC-adding (EC 2.7.7.21)	Polyadenylation_bacterial	RNA Metabolism	RNA processing and modification
tRNA nucleotidyltransferase, A-adding (EC 2.7.7.25)	Polyadenylation_bacterial	RNA Metabolism	RNA processing and modification
Uncharacterized protein ImpA	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein ImpB	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein ImpC	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein ImpD	USS-DB-7	Clustering-based subsystems	
Protein of avirulence locus ImpE	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein ImpF	USS-DB-7	Clustering-based subsystems	
Protein ImpG/VasA	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein ImpH/VasB	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein ImpI/VasC	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein ImpJ/VasE	USS-DB-7	Clustering-based subsystems	
Outer membrane protein ImpK/VasF, OmpA/MotB domain	USS-DB-7	Clustering-based subsystems	
Protein phosphatase ImpM	USS-DB-7	Clustering-based subsystems	
ClpB protein	USS-DB-7	Clustering-based subsystems	
VgrG protein	USS-DB-7	Clustering-based subsystems	
Putative cytoplasmic protein USSDB7A	USS-DB-7	Clustering-based subsystems	
Uncharacterized protein similar to VCA0109	USS-DB-7	Clustering-based subsystems	
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutamate--cysteine ligase (EC 6.3.2.2)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, omega (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione synthetase (EC 6.3.2.3)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Hypothetical metal-binding enzyme, YcbL homolog	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Lactoylglutathione lyase (EC 4.4.1.5)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Methylglyoxal synthase (EC 4.2.3.3)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Probable glutathione S-transferase (EC 2.5.1.18), YfcG homolog	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Uncharacterized GST-like protein yghU associated with glutathionylspermidine synthetase/amidase	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Uncharacterized GST-like protein yibF	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Uncharacterized GST-like protein yncG	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Uncharacterized glutathione S-transferase-like protein	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, zeta (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Predicted alternative glutathione synthetase (EC 6.3.2.3)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase family protein	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
SAM-dependent methyltransferase 2, in cluster with Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Distant similarity with leukotriene C4 synthase (microsomal glutathione S-transferase)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Phytochelatin synthase (EC 2.3.2.15), bacterial type	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, Streptococcal type (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, theta (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, phi (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, alpha (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Phytochelatin synthase (EC 2.3.2.15), eukaryotic type	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Glutathione S-transferase, delta (EC 2.5.1.18)	Glutathione:_Non-redox_reactions	Stress Response	Oxidative stress
Cell division protein FtsW	cell_division_cluster_containing_FtsQ	Clustering-based subsystems	Cell Division
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	cell_division_cluster_containing_FtsQ	Clustering-based subsystems	Cell Division
D-alanine--D-alanine ligase (EC 6.3.2.4)	cell_division_cluster_containing_FtsQ	Clustering-based subsystems	Cell Division
Cell division protein FtsQ	cell_division_cluster_containing_FtsQ	Clustering-based subsystems	Cell Division
Cell division protein FtsA	cell_division_cluster_containing_FtsQ	Clustering-based subsystems	Cell Division
Cell division protein FtsZ (EC 3.4.24.-)	cell_division_cluster_containing_FtsQ	Clustering-based subsystems	Cell Division
D-alanine--D-alanine ligase B (EC 6.3.2.4)	cell_division_cluster_containing_FtsQ	Clustering-based subsystems	Cell Division
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)	Quinolinic_acid_and_its_derivatives	Secondary Metabolism	Biologically active compounds in metazoan cell defence and differentiation
Quinolinate synthetase (EC 4.1.99.-)	Quinolinic_acid_and_its_derivatives	Secondary Metabolism	Biologically active compounds in metazoan cell defence and differentiation
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
RecA/RadA recombinase	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Phosphate-binding DING protein (related to PstS)	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Hemolysin activation/secretion protein associated with VreARI signalling system	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Putative outer membrane TonB-dependent receptor associated with haemagglutinin family outer membrane protein	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
hypothetical protein in cluster with VreARI signaling system	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein C	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein D	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein E	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein F	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein G	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein H	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein I	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein J	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein K	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein L	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
General secretion pathway protein M	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Ferric siderophore transport system, periplasmic binding protein TonB	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
MotA/TolQ/ExbB proton channel family protein	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Biopolymer transport protein ExbD/TolR	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Heme oxygenase HemO, associated with heme uptake	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Extracytoplasmic function (ECF) sigma factor VreI	Phosphate-binding_DING_proteins	Phosphorus Metabolism	
Multidrug efflux transporter MdtP	Multidrug_Resistance_Operon_mdtRP_of_Bacillus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
MdtR transcriptional regulator, MarR family	Multidrug_Resistance_Operon_mdtRP_of_Bacillus	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FIG006427: Putative transport system permease protein	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
FIG128630: Hypothetical protein	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Hypothetical protein YhfZ	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Phosphopentomutase (EC 5.4.2.7)	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Phosphopentomutase like (EC 5.4.2.7)	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Phosphotriesterase like protein	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Protein containing PTS-regulatory domain	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Protein containing an Alanine Racemase Domain	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Aspartate aminotransferase family	Cluster_with_phosphopentomutase_paralog	Clustering-based subsystems	
Proteasome subunit alpha (EC 3.4.25.1), archaeal	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
Shwachman-Bodian-Diamond syndrome protein	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
LSU ribosomal protein L37Ae	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
LSU ribosomal protein L15e	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
Ribonuclease P protein component 3 (EC 3.1.26.5)	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
Probable exosome complex exonuclease 2 (EC 3.1.13.-)	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
Probable exosome complex RNA-binding protein 1	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
Exosome complex exonuclease 1	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
Predicted exosome subunit FIG055367	Proteasome_subunit_alpha_archaeal_cluster	Clustering-based subsystems	Proteasome related clusters
Phosphopentomutase (EC 5.4.2.7)	CSBB-630.2.peg.1023	Experimental Subsystems	
Hypothetical protein yhfU	CSBB-630.2.peg.1023	Experimental Subsystems	
Putative transport system permease protein	CSBB-630.2.peg.1023	Experimental Subsystems	
Phosphotriesterase homology protein	CSBB-630.2.peg.1023	Experimental Subsystems	
Protein containing an Alanine Racemase Domain	CSBB-630.2.peg.1023	Experimental Subsystems	
Protein frlC	CSBB-630.2.peg.1023	Experimental Subsystems	
Protein containing PTS-regulatory domain	CSBB-630.2.peg.1023	Experimental Subsystems	
DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	DNA_processing_cluster	DNA Metabolism	DNA uptake, competence
DNA topoisomerase III (EC 5.99.1.2)	DNA_processing_cluster	DNA Metabolism	DNA uptake, competence
FIG000557: hypothetical protein co-occurring with RecR	DNA_processing_cluster	DNA Metabolism	DNA uptake, competence
FIG015094: hypothetical protein	DNA_processing_cluster	DNA Metabolism	DNA uptake, competence
Inhibitor of pro-sigmaK processing BofA	DNA_processing_cluster	DNA Metabolism	DNA uptake, competence
Recombination protein RecR	DNA_processing_cluster	DNA Metabolism	DNA uptake, competence
Protein involved in catabolism of external DNA	DNA_processing_cluster	DNA Metabolism	DNA uptake, competence
Cyclomaltodextrin glucanotransferase (EC 2.4.1.19)	Alpha-Amylase_locus_in_Streptocococcus	Carbohydrates	Polysaccharides
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE	Alpha-Amylase_locus_in_Streptocococcus	Carbohydrates	Polysaccharides
Transposase (maltose area)	Alpha-Amylase_locus_in_Streptocococcus	Carbohydrates	Polysaccharides
putative esterase	Alpha-Amylase_locus_in_Streptocococcus	Carbohydrates	Polysaccharides
Aspartate dehydrogenase [same functional role as] (EC 1.4.3.16)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Quinolinate synthetase (EC 2.5.1.72)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Nicotinamidase (EC 3.5.1.19)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
NAD synthetase (EC 6.3.1.5)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
ADP-ribose pyrophosphatase (EC 3.6.1.13)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
NAD kinase (EC 2.7.1.23)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
L-aspartate oxidase (EC 1.4.3.16)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Glutamine amidotransferase chain of NAD synthetase	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Ribosyl nicotinamide transporter, PnuC-like	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Ribosylnicotinamide kinase (EC 2.7.1.22)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
NMN synthetase (EC 6.3.1.-)	Bifunctional_NMNAT-ADPRPs	Experimental Subsystems	Supplement for the paper 2
Inner membrane protein YphA	Unknown_sugar_utilization_(cluster_yphABCDEFG)	Carbohydrates	
Aldose 1-epimerase family protein YphB	Unknown_sugar_utilization_(cluster_yphABCDEFG)	Carbohydrates	
Hypothetical zinc-type alcohol dehydrogenase-like protein YphC	Unknown_sugar_utilization_(cluster_yphABCDEFG)	Carbohydrates	
Predicted sugar ABC transport system, permease protein YphD	Unknown_sugar_utilization_(cluster_yphABCDEFG)	Carbohydrates	
Predicted sugar ABC transport system, periplasmic binding protein YphF precursor	Unknown_sugar_utilization_(cluster_yphABCDEFG)	Carbohydrates	
Predicted sugar ABC transport system, ATP-binding protein YphE	Unknown_sugar_utilization_(cluster_yphABCDEFG)	Carbohydrates	
Uncharacterized protein YphG, TPR-domain containing	Unknown_sugar_utilization_(cluster_yphABCDEFG)	Carbohydrates	
Trehalose-6-phosphate phosphatase (EC 3.1.3.12)	Mycobacterium_virulence_operon_involved_with_a_mostly_uncharacterized_dormancy_regulon	Virulence	
FIG153983: Universal stress protein Rv2005c/MT2061	Mycobacterium_virulence_operon_involved_with_a_mostly_uncharacterized_dormancy_regulon	Virulence	
FIG037390: hypothetical protein Rv2004c/MT2060	Mycobacterium_virulence_operon_involved_with_a_mostly_uncharacterized_dormancy_regulon	Virulence	
FIG147732: hypothetical protein Rv2003c/MT2059	Mycobacterium_virulence_operon_involved_with_a_mostly_uncharacterized_dormancy_regulon	Virulence	
FIG017822: Ferredoxin	Mycobacterium_virulence_operon_involved_with_a_mostly_uncharacterized_dormancy_regulon	Virulence	
Fumarate respiration transcriptional regulator DcuR	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate respiration sensor kinase protein DcuS	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate reductase flavoprotein subunit	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate reductase iron-sulfur protein subunit	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate reductase subunit C	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate reductase subunit D	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate hydratase class II (EC 4.2.1.2)	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
C4-dicarboxylate transporter DcuA	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
C4-dicarboxylate transporter DcuB	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Aspartate ammonia-lyase (EC 4.3.1.1)	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
Fumarate hydratase class I (EC 4.2.1.2)	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
C4-dicarboxylate like transporter	Fumarate_respiration_and_methabolism	Experimental Subsystems	Central carbohydrate metabolism
type I restriction modification system modification protein	Future_SA_prophage_SS	Experimental Subsystems	
Probable type I site-specific deoxyribonuclease LldI chain hsdM	Future_SA_prophage_SS	Experimental Subsystems	
Polysaccharide intercellular adhesin (PIA) biosynthesis N-glycosyltransferase IcaA (EC 2.4.-.-)	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Polysaccharide intercellular adhesin (PIA) biosynthesis deacetylase IcaB (EC 3.-.-.-)	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Polysaccharide intercellular adhesin (PIA) biosynthesis protein IcaD	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Biofilm operon icaABCD HTH-type negative transcriptional regulator IcaR	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Antiadhesin Pls, binding to squamous nasal epithelial cells	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Bifunctional autolysin Atl	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Transcriptional regulator of biofilm formation (AraC/XylS family)	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Teicoplanin-resistance associated HTH-type transcriptional regulator TcaR	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Staphylococcal accessory regulator A (SarA)	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
RNA polymerase sigma factor SigB	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Polysaccharide intercellular adhesin (PIA) biosynthesis protein IcaC	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
Accumulation-associated protein AAP	Biofilm_formation_in_Staphylococcus	Regulation and Cell signaling	Quorum sensing and biofilm formation
FIG038982: hypothetical protein	CBSS-279010.5.peg.1134	Clustering-based subsystems	
FIG004131: Transcriptional regulator, ArsR family	CBSS-279010.5.peg.1134	Clustering-based subsystems	
Molybdenum transport protein, putative	CBSS-269799.3.peg.2220	Clustering-based subsystems	Molybdopterin oxidoreductase
ABC-type Fe3+ transport system protein	CBSS-269799.3.peg.2220	Clustering-based subsystems	Molybdopterin oxidoreductase
Molybdopterin oxidoreductase, iron-sulfur binding subunit (EC 1.2.7.-)	CBSS-269799.3.peg.2220	Clustering-based subsystems	Molybdopterin oxidoreductase
Molybdopterin oxidoreductase subunit, predicted	CBSS-269799.3.peg.2220	Clustering-based subsystems	Molybdopterin oxidoreductase
Molybdopterin oxidoreductase (EC 1.2.7.-)	CBSS-269799.3.peg.2220	Clustering-based subsystems	Molybdopterin oxidoreductase
Putative uncharacterized protein TTHA1760	CBSS-269799.3.peg.2220	Clustering-based subsystems	Molybdopterin oxidoreductase
Ferric iron ABC transporter, iron-binding protein	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Two-component response regulator, associated with ferric iron transporter, SPy1062 homolog	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Two-component sensor kinase, associated with ferric iron transporter, SPy1061 homolog	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Ferric iron ABC transporter, ATP-binding protein	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Ferric iron ABC transporter, permease protein	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Iron compound ABC uptake transporter ATP-binding protein	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Iron compound ABC uptake transporter permease protein	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Iron compound ABC uptake transporter substrate-binding protein	Iron_acquisition_in_Streptococcus	Iron acquisition and metabolism	
Putative aldolase YdjI	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Uncharacterized sugar kinase YdjH	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Hypothetical zinc-type alcohol dehydrogenase-like protein YdjJ	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Putative oxidoreductase YdjL	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Putative transport protein YdjK, MFS superfamily	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Hypothetical oxidoreductase YdjG (EC 1.-.-.-)	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Putative HTH-type transcriptional regulator YdjF	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Putative oxidoreductase YeaE, aldo/keto reductase family	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Inner membrane protein YeaI	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Aldose 1-epimerase family protein YeaD	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
MltA-interacting protein MipA	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Uncharacterized protein YeaG	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Putative two-component response regulator and GGDEF family protein YeaJ	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Uncharacterized protein YeaC	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12)	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
UPF0229 protein YeaH	Unknown_carbohydrate_utilization_(_cluster_Ydj_)	Carbohydrates	
Prophage baseplate (uncharacterized for now)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate assembly protein W	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate assembly protein J	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate assembly protein V	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate protein	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate hub	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit and tail pin (T4-like gp11)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit and tail pin (T4-like gp10)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge initiator (T4-like gp7)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate hub subunit (T4-like gp5) / Phage tail lysozyme (T4-like gp5)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit (T4-like gp8)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit (T4-like gp6)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit (T4-like gp53)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge subunit (T4-like gp25)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate hub subunit (T4-like gp27)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate wedge tail fiber connector (T4-like gp9)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate tail tube cap (T4-like gp48)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate-tail tube initiator (T4-like gp54)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate hub assembly chaperone (T4-like gp26)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate (uncharacterized for now)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage upper baseplate protein (TP901-1-like ORF48)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage lower baseplate protein (TP901-1-like ORF49)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate distal hub subunit (T4-like gp28)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate hub subunit (T4-like gp29) / determinant of tail length (T4-like gp29)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage baseplate hub assembly chaperone (T4-like gp51)	Phage_baseplate_proteins	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
RND efflux system, membrane fusion protein CmeA	Multidrug_efflux_pump_in_Campylobacter_jejuni_(CmeABC_operon)	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RND efflux system, inner membrane transporter CmeB	Multidrug_efflux_pump_in_Campylobacter_jejuni_(CmeABC_operon)	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RND efflux system, outer membrane lipoprotein CmeC	Multidrug_efflux_pump_in_Campylobacter_jejuni_(CmeABC_operon)	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcriptional repressor of CmeABC operon, CmeR	Multidrug_efflux_pump_in_Campylobacter_jejuni_(CmeABC_operon)	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Cd(II)/Pb(II)-responsive transcriptional regulator	CBSS-36873.1.peg.4752	Clustering-based subsystems	
Cobalt-zinc-cadmium resistance protein CzcD	CBSS-36873.1.peg.4752	Clustering-based subsystems	
Lipoprotein signal peptidase (EC 3.4.23.36)	CBSS-36873.1.peg.4752	Clustering-based subsystems	
Il-IS_2, transposase	CBSS-36873.1.peg.4752	Clustering-based subsystems	
Leucyl-tRNA synthetase (EC 6.1.1.4)	A_hypothetical_protein_that_co-occurs_with_Leucyl-tRNA_synthetase	Clustering-based subsystems	
FIG002095: hypothetical protein	A_hypothetical_protein_that_co-occurs_with_Leucyl-tRNA_synthetase	Clustering-based subsystems	
Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48)	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Phosphoanhydride phosphohydrolase (EC 3.1.3.2) (pH 2.5 acid phosphatase) (AP)	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Polysaccharide export lipoprotein Wza	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative capsular polysaccharide transport protein YegH	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative outer membrane lipoprotein YmcA	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative polysaccharide export protein YccZ precursor	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Tyrosine-protein kinase Wzc (EC 2.7.10.2)	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7)	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Uncharacterized lipoprotein YmcC precursor	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
CMP-Kdo synthetase, KpsU	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide ABC transporter, permease protein KpsM	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system inner membrane protein KpsE	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system periplasmic protein KpsD	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system protein KpsC	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide export system protein KpsS	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Oligosaccharide repeat unit polymerase Wzy	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
O-antigen flippase Wzx	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative uncharacterized protein YmcB	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide ABC transporter, ATP-binding protein KpsT	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis/export periplasmic protein WcbA	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis protein WcbQ	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis/export periplasmic protein WcbC	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis protein WcbF	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis protein WcbJ, NAD-dependent epimerase/dehydratase family	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glycosyl transferase, group 1 family protein (EC 2.4.1.-)	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Capsular polysaccharide biosynthesis protein CapD	Capsular_Polysaccharides_Biosynthesis_and_Assembly	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Ribosomal subunit interface protein	Ribosome_activity_modulation	Protein Metabolism	Protein biosynthesis
Ribosome hibernation protein YhbH	Ribosome_activity_modulation	Protein Metabolism	Protein biosynthesis
Ribosome modulation factor	Ribosome_activity_modulation	Protein Metabolism	Protein biosynthesis
Ribosome hibernation protein YfiA	Ribosome_activity_modulation	Protein Metabolism	Protein biosynthesis
Stationary-phase-induced ribosome-associated protein	Ribosome_activity_modulation	Protein Metabolism	Protein biosynthesis
TRAP transporter solute receptor, TAXI family precursor	TRAP_Transporter_unknown_substrate_9	Membrane Transport	TRAP transporters
TRAP-type uncharacterized transport system, fused permease component	TRAP_Transporter_unknown_substrate_9	Membrane Transport	TRAP transporters
Phage repressor	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage antitermination protein Q	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage antirepressor protein	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage antitermination protein	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage anti-termination	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
RNA polymerase sigma factor	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage antirepressor	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage CI-like repressor	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage anti-sigma factor	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage inhibitor of transcription initiation and antiterminator	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
Superinfection exclusion protein B	Phage_regulation_of_gene_expression	Experimental Subsystems	Phages, Prophages, Transposable elements
HTH-type transcriptional regulator PtxR	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
2-ketogluconate utilization repressor PtxS	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
Epimerase KguE	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
2-ketogluconate kinase (EC 2.7.1.13)	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
2-ketogluconate transporter	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
2-ketogluconate 6-phosphate reductase (EC 1.1.1.43)	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
Membrane protein DUF2324 in 2-Ketogluconate Utilization cluster	2-Ketogluconate_Utilization	Carbohydrates	Monosaccharides
Allophanate hydrolase (EC 3.5.1.54)	Urea_carboxylase_and_Allophanate_hydrolase_cluster	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase (EC 6.3.4.6)	Urea_carboxylase_and_Allophanate_hydrolase_cluster	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	Urea_carboxylase_and_Allophanate_hydrolase_cluster	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	Urea_carboxylase_and_Allophanate_hydrolase_cluster	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase (EC 6.3.4.6) without Allophanate hydrolase 2 domains	Urea_carboxylase_and_Allophanate_hydrolase_cluster	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Partial urea carboxylase 2 (EC 6.3.4.6)	Urea_carboxylase_and_Allophanate_hydrolase_cluster	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Partial urea carboxylase (EC 6.3.4.6)	Urea_carboxylase_and_Allophanate_hydrolase_cluster	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Polyunsaturated_Fatty_Acids_synthesis	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Polyunsaturated_Fatty_Acids_synthesis	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Polyunsaturated_Fatty_Acids_synthesis	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
4'-phosphopantetheinyl transferase (EC 2.7.8.-), inferred for PFA pathway	Polyunsaturated_Fatty_Acids_synthesis	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
putative transcriptional regulator, inferred for PFA pathway	Polyunsaturated_Fatty_Acids_synthesis	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Polyunsaturated_Fatty_Acids_synthesis	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
omega-3 polyunsaturated fatty acid synthase module PfaB/C	Polyunsaturated_Fatty_Acids_synthesis	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
ABC-type tungstate transport system, ATP-binding protein	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
ABC-type tungstate transport system, periplasmic binding protein	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
ABC-type tungstate transport system, permease protein	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Formylmethanofuran dehydrogenase (tungsten) subunit C (EC 1.2.99.5)	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Tungsten-containing formaldehyde:ferredoxin oxidoreductase	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
ABC-type vanadate transport system, ATP-binding protein	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
ABC-type vanadate transport system, periplasmic binding protein	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
ABC-type vanadate transport system, permease protein	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Tungsten-containing ferredoxin oxidoreductase WOR4	ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	ABC transporters
Carbon storage regulator	Carbon_storage_regulator	Carbohydrates	
Flagellar assembly factor FliW	Carbon_storage_regulator	Carbohydrates	
Flagellar hook-associated protein FlgK	Carbon_storage_regulator	Carbohydrates	
Flagellar hook-associated protein FlgL	Carbon_storage_regulator	Carbohydrates	
putative polyketide cyclase	CBSS-106370.11.peg.4050	Clustering-based subsystems	Actinorhodin biosynthetic cluster
beta-ketoacyl synthase beta-subunit (chain length factor)	CBSS-106370.11.peg.4050	Clustering-based subsystems	Actinorhodin biosynthetic cluster
actinorhodin cluster activator protein	CBSS-106370.11.peg.4050	Clustering-based subsystems	Actinorhodin biosynthetic cluster
Short-chain dehydrogenase/reductase SDR	CBSS-106370.11.peg.4050	Clustering-based subsystems	Actinorhodin biosynthetic cluster
actinorhodin polyketide synthase bifunctional cyclase/dehydratase	CBSS-106370.11.peg.4050	Clustering-based subsystems	Actinorhodin biosynthetic cluster
putative acyl-CoA synthetase, long chain-fatty acid:CoA ligase	CBSS-106370.11.peg.4050	Clustering-based subsystems	Actinorhodin biosynthetic cluster
Phage-encoded high light-inducible protein, HliP	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Transaldolase (EC 2.2.1.2)	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
photosystem II protein D1 (PsbA)	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T7-like cyanophage core protein, T7 GC53	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T7-like cyanophage core protein, T7 GC51	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T7-like cyanophage core protein, T7 GC54	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
T7-like cyanophage core protein, T7 GC55	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	T7-like_cyanophage_core_proteins	Phages, Prophages, Transposable elements, Plasmids	Phage family-specific subsystems
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) [bacillibactin] siderophore	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Isochorismatase (EC 3.3.2.1) [bacillibactin] siderophore	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Isochorismate synthase (EC 5.4.4.2) [bacillibactin] siderophore	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [bacillibactin] siderophore	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Bacillibactin synthetase component F (EC 2.7.7.-)	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Trilactone hydrolase [bacillibactin] siderophore	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Fe-bacillibactin uptake system FeuA, Fe-bacillibactin binding	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Fe-bacillibactin uptake system FeuB	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Fe-bacillibactin uptake system FeuC	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Fe-bacillibactin uptake system FeuA, regulatory component	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
Fe-bacillibactin uptake system FeuD	Bacillibactin_Siderophore	Iron acquisition and metabolism	Siderophores
DMSP demethylase (DmdA) (EC 2.1.2.10)	Dimethylsulfoniopropionate_(DMSP)_mineralization	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA ligase (DmdB)	Dimethylsulfoniopropionate_(DMSP)_mineralization	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)	Dimethylsulfoniopropionate_(DMSP)_mineralization	Sulfur Metabolism	
3-methylthioacryloyl-CoA hydratase (DmdD)	Dimethylsulfoniopropionate_(DMSP)_mineralization	Sulfur Metabolism	
Malonate decarboxylase alpha subunit	Malonate_decarboxylase	Carbohydrates	Organic acids
Malonate decarboxylase beta subunit	Malonate_decarboxylase	Carbohydrates	Organic acids
Malonate decarboxylase gamma subunit	Malonate_decarboxylase	Carbohydrates	Organic acids
Malonate decarboxylase delta subunit	Malonate_decarboxylase	Carbohydrates	Organic acids
Malonate transporter, MadL subunit	Malonate_decarboxylase	Carbohydrates	Organic acids
Malonate transporter, MadM subunit	Malonate_decarboxylase	Carbohydrates	Organic acids
Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Malonate_decarboxylase	Carbohydrates	Organic acids
Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Malonate_decarboxylase	Carbohydrates	Organic acids
Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)	Malonate_decarboxylase	Carbohydrates	Organic acids
Malonate utilization transcriptional regulator	Malonate_decarboxylase	Carbohydrates	Organic acids
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroorotase (EC 3.5.2.3)	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Ferric uptake regulation protein FUR	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminodeoxychorismate lyase (EC 4.1.3.38)	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cytochrome c heme lyase subunit CcmF	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Iron-binding ferritin-like antioxidant protein	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Transcriptional regulator, FUR family	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DUF1794	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG1272: Predicted membrane protein hemolysin III homolog	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Tricarboxylate transport membrane protein TctA	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Tricarboxylate transport protein TctB	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Tricarboxylate transport protein TctC	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
TctA citrate transporter	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
TctB citrate transporter	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
TctC citrate transporter	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
iron (metal) dependent repressor, DtxR family	YgfZ-Iron	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Ribokinase (EC 2.7.1.15)	PfkB_kinase	Experimental Subsystems	
Hypothetical sugar kinase in cluster with indigoidine synthase indA , PfkB family of kinases	PfkB_kinase	Experimental Subsystems	
Indigoidine synthase A-like protein, uncharacterized enzyme involved in pigment biosynthesis	PfkB_kinase	Experimental Subsystems	
Uncharacterized sugar kinase yeiI clustered with IndA	PfkB_kinase	Experimental Subsystems	
Phage maturase	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage replication initiation protein	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage attachment protein	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage assembly protein	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage ssDNA binding protein	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage minor capsid protein	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage major capsid protein	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Phage Inoviridae protein Gp10	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Accessory cholera enterotoxin	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Zona occludens toxin	Phage_Family_Inoviridae	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Glycosyl transferase, group 1	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Glycosyltransferase	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Tyrosine-protein kinase Wzc (EC 2.7.10.2)	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Exopolysaccharide production protein ExoF precursor	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Exopolysaccharide production protein ExoQ	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Exopolysaccharide production protein ExoZ	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Secretion protein, HlyD family	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Putative glycosyltransferase protein	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
putative glycosyltransferase protein	CBSS-258594.1.peg.3339	Clustering-based subsystems	Biosynthesis of galactoglycans and related lipopolysacharides
Co-activator of prophage gene expression IbrA	IbrA_and_IbrB:_co-activators_of_prophage_gene_expression	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
Co-activator of prophage gene expression IbrB	IbrA_and_IbrB:_co-activators_of_prophage_gene_expression	Phages, Prophages, Transposable elements, Plasmids	Phages, Prophages
tRNA nucleotidyltransferase, archaeal type (EC 2.7.7.21) (EC 2.7.7.25)	tRNA_nucleotidyltransferase	RNA Metabolism	RNA processing and modification
tRNA nucleotidyltransferase, A-adding (EC 2.7.7.25)	tRNA_nucleotidyltransferase	RNA Metabolism	RNA processing and modification
tRNA nucleotidyltransferase, CC-adding (EC 2.7.7.21)	tRNA_nucleotidyltransferase	RNA Metabolism	RNA processing and modification
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	tRNA_nucleotidyltransferase	RNA Metabolism	RNA processing and modification
Poly(A) polymerase (EC 2.7.7.19)	tRNA_nucleotidyltransferase	RNA Metabolism	RNA processing and modification
tRNA nucleotidyltransferase related protein MMP0420	tRNA_nucleotidyltransferase	RNA Metabolism	RNA processing and modification
TRAP transporter solute receptor, unknown substrate 3	TRAP_Transporter_unknown_substrate_3	Experimental Subsystems	
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3	TRAP_Transporter_unknown_substrate_3	Experimental Subsystems	
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3	TRAP_Transporter_unknown_substrate_3	Experimental Subsystems	
Multidrug efflux membrane fusion protein MexE	MexE-MexF-OprN_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Multidrug efflux transporter MexF	MexE-MexF-OprN_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Outer membrane protein OprN	MexE-MexF-OprN_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Transcriptional regulator MexT	MexE-MexF-OprN_Multidrug_Efflux_System	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Chlorosome protein A	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein B	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein C	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein D	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein E	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein F	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein H	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein I, 2Fe-2S ferredoxin	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein J, 2Fe-2S ferredoxin	Chlorosome	Photosynthesis	Light-harvesting complexes
Chlorosome protein X	Chlorosome	Photosynthesis	Light-harvesting complexes
Cell division protein FtsX	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
Membrane proteins related to metalloendopeptidases	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
Peptide chain release factor 2	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
hypothetical protein BH3604	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
peptidoglycan lytic protein P45	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
NLP/P60 family protein	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
Peptidase, M23/M37 family	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
ABC transporter ATP-binding protein uup	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
Protein export cytoplasm protein SecA2 ATPase RNA helicase (TC 3.A.5.1.1)	CBSS-393121.3.peg.2760	Clustering-based subsystems	Protein export?
Catabolite control protein A	HPr_catabolite_repression_system	Regulation and Cell signaling	
Catabolite repression HPr-like protein Crh	HPr_catabolite_repression_system	Regulation and Cell signaling	
HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-)	HPr_catabolite_repression_system	Regulation and Cell signaling	
Inorganic pyrophospatase PpaX	HPr_catabolite_repression_system	Regulation and Cell signaling	
Phosphocarrier protein of PTS system	HPr_catabolite_repression_system	Regulation and Cell signaling	
Cytoplasmic protein YaiE	CBSS-562.2.peg.5158_SK3_including	Clustering-based subsystems	
AroM protein	CBSS-562.2.peg.5158_SK3_including	Clustering-based subsystems	
Protein YaiI	CBSS-562.2.peg.5158_SK3_including	Clustering-based subsystems	
Protein YaiA	CBSS-562.2.peg.5158_SK3_including	Clustering-based subsystems	
Shikimate kinase III (EC 2.7.1.71)	CBSS-562.2.peg.5158_SK3_including	Clustering-based subsystems	
Protein YkiA	CBSS-562.2.peg.5158_SK3_including	Clustering-based subsystems	
DNA recombination-dependent growth factor C	CBSS-562.2.peg.5158_SK3_including	Clustering-based subsystems	
Phage major capsid protein	Phage_family_Microviridae		
Phage minor capsid protein - DNA pilot protein	Phage_family_Microviridae		
Phage internal scaffolding protein	Phage_family_Microviridae		
Phage DNA replication protein	Phage_family_Microviridae		
Phage single stranded DNA synthesis	Phage_family_Microviridae		
Chlamydiaphage nonstructural protein ORF6	Phage_family_Microviridae		
Phage DNA binding protein	Phage_family_Microviridae		
Phage external scaffolding protein	Phage_family_Microviridae		
Phage major spike protein	Phage_family_Microviridae		
Phage lysin, phospho-MurNAc-pentapeptide translocase inhibitor	Phage_family_Microviridae		
Phage protein, protein K superfamily	Phage_family_Microviridae		
Phage inhibition of host synthesis and/or superinfection exclusion	Phage_family_Microviridae		
Glutamine synthetase family protein in hypothetical Actinobacterial gene cluster	CBSS-262316.1.peg.2929	Clustering-based subsystems	Catabolism of an unknown compound
Short-chain dehydrogenase/reductase in hypothetical Actinobacterial gene cluster	CBSS-262316.1.peg.2929	Clustering-based subsystems	Catabolism of an unknown compound
Aldehyde dehydrogenase in hypothetical Actinobacterial gene cluster	CBSS-262316.1.peg.2929	Clustering-based subsystems	Catabolism of an unknown compound
COG2071: predicted glutamine amidotransferases in hypothetical Actinobacterial gene cluster	CBSS-262316.1.peg.2929	Clustering-based subsystems	Catabolism of an unknown compound
Transcriptional regulator, GntR family, in hypothetical Actinobacterial gene cluster	CBSS-262316.1.peg.2929	Clustering-based subsystems	Catabolism of an unknown compound
Amino acid permease in hypothetical Actinobacterial gene cluster	CBSS-262316.1.peg.2929	Clustering-based subsystems	Catabolism of an unknown compound
Amino acid/metabolite permease in hypothetical Actinobacterial gene cluster	CBSS-262316.1.peg.2929	Clustering-based subsystems	Catabolism of an unknown compound
Cyanide insensitive terminal oxidase, subunit I	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Cyanide insensitive terminal oxidase, subunit II	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Cyanide insensitive terminal oxidase, putative subunit III	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Phosphatidylserine decarboxylase (EC 4.1.1.65)	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Carbonic anhydrase (EC 4.2.1.1)	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Sulfate transporter family protein in cluster with carbonic anhydrase	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Rhodanese-related sulfurtransferase	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Hydrogen cyanide synthase HcnA	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Hydrogen cyanide synthase HcnB	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Hydrogen cyanide synthase HcnC	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Formate dehydrogenase O alpha subunit (EC 1.2.1.2)	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Formate dehydrogenase O beta subunit (EC 1.2.1.2)	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Formate dehydrogenase O gamma subunit (EC 1.2.1.2)	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
formate dehydrogenase formation protein FdhE	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
NADH peroxidase Npx (EC 1.11.1.1)	Bacterial_cyanide_production_and_tolerance_mechanisms	Virulence, Disease and Defense	
Streptodornase B	SpeB-SpeF_extended_regulon	Regulation and Cell signaling	Regulation of virulence
RopB	SpeB-SpeF_extended_regulon	Regulation and Cell signaling	Regulation of virulence
Strepotococcal cysteine protease (Streptopain) (EC 3.4.22.10)	SpeB-SpeF_extended_regulon	Regulation and Cell signaling	Regulation of virulence
Streptopain inhibitor	SpeB-SpeF_extended_regulon	Regulation and Cell signaling	Regulation of virulence
Proteinase maturation protein (RopA)	SpeB-SpeF_extended_regulon	Regulation and Cell signaling	Regulation of virulence
33 kDa chaperonin (Heat shock protein 33) (HSP33)	CBSS-584.1.peg.3382	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	CBSS-584.1.peg.3382	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	CBSS-584.1.peg.3382	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system	CBSS-584.1.peg.3382	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
FIG001957: putative hydrolase	CBSS-584.1.peg.3382	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
L-lactate dehydrogenase (EC 1.1.1.27)	CR_clusters_Euk_3	Experimental Subsystems	
Serum amyloid A protein	CR_clusters_Euk_3	Experimental Subsystems	
Hermansky-Pudlak syndrome 5 protein	CR_clusters_Euk_3	Experimental Subsystems	
tumor susceptibility gene 101	CR_clusters_Euk_3	Experimental Subsystems	
TFIIH basal transcription factor complex p62 subunit	CR_clusters_Euk_3	Experimental Subsystems	
RecA protein	CBSS-469378.4.peg.430	Clustering-based subsystems	
FIG002344: Hydrolase (HAD superfamily)	CBSS-469378.4.peg.430	Clustering-based subsystems	
Fumarate respiration sensor kinase protein DcuS	Fumarate_respiration_cluster	Respiration	Electron accepting reactions
Fumarate respiration transcriptional regulator DcuR	Fumarate_respiration_cluster	Respiration	Electron accepting reactions
C4-dicarboxylate transporter DcuB	Fumarate_respiration_cluster	Respiration	Electron accepting reactions
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	Fumarate_respiration_cluster	Respiration	Electron accepting reactions
FIG022068: Hypothetical protein	CBSS-224911.1.peg.6954	Clustering-based subsystems	
FIG024738: Hypothetical protein	CBSS-224911.1.peg.6954	Clustering-based subsystems	
Exoenzymes regulatory protein AepA precursor	CBSS-224911.1.peg.6954	Clustering-based subsystems	
FIG002283: Isochorismatase family protein	CBSS-224911.1.peg.6954	Clustering-based subsystems	
FIG022886: Transcriptional regulator, LysR family	CBSS-224911.1.peg.6954	Clustering-based subsystems	
FIG024214: Transcriptional regulator, AraC family	CBSS-224911.1.peg.6954	Clustering-based subsystems	
FIG026426: Hypothetical protein	CBSS-224911.1.peg.6954	Clustering-based subsystems	
DUF1275 domain-containing protein	CBSS-224911.1.peg.6954	Clustering-based subsystems	
FIG027115: Membrane protein	CBSS-224911.1.peg.6954	Clustering-based subsystems	
Translation elongation factor 1 alpha subunit	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation elongation factor 1 beta subunit	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation elongation factor 2	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation elongation factor P	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Eukaryotic peptide chain release factor subunit 1	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation elongation factor 1 alpha-related protein	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation elongation factor 1 gamma subunit	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Eukaryotic peptide chain release factor GTP-binding subunit	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation elongation factor 3	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
HBS1 protein	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Translation elongation factor 1 delta subunit	Translation_elongation_factors_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Intracellular septation protein IspA	CBSS-211586.9.peg.2729	Clustering-based subsystems	
YciL protein	CBSS-211586.9.peg.2729	Clustering-based subsystems	
Acyl-CoA thioesterase YciA, involved in membrane biogenesis	CBSS-211586.9.peg.2729	Clustering-based subsystems	
Enolase (EC 4.2.1.11)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Peptide deformylase (EC 3.5.1.88)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Lipoate-protein ligase A	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Transcriptional activator of acetoin dehydrogenase operon AcoR	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Leucine dehydrogenase (EC 1.4.1.9)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Cytosol aminopeptidase PepA (EC 3.4.11.1)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Transcriptional regulator BkdR of isoleucine and valine catabolism operon	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Valine dehydrogenase (EC 1.4.1.-)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Enoyl-CoA hydratase [branched-chain amino acid degradation] (EC 4.2.1.17)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Acetoin utilization protein AcuB	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Septum formation initiator	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Acetoin catabolism protein X	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
(Pyruvate) Oxoisovalerate Dehydrogenase Alpha & Beta Fusion like	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Transcriptional repressor for pyruvate dehydrogenase complex	Dehydrogenase_complexes	Carbohydrates	Central carbohydrate metabolism
Inner membrane protein YcdZ	Ycd_cluster_(_putative_2-hydroxyacid_dehydrogenase_)	Clustering-based subsystems	
Putative 2-hydroxyacid dehydrogenase YcdW (EC 1.-.-.-)	Ycd_cluster_(_putative_2-hydroxyacid_dehydrogenase_)	Clustering-based subsystems	
Putative hydrolase YcdX (EC 3.1.-.-)	Ycd_cluster_(_putative_2-hydroxyacid_dehydrogenase_)	Clustering-based subsystems	
Uncharacterized protein YcdY, TorD family	Ycd_cluster_(_putative_2-hydroxyacid_dehydrogenase_)	Clustering-based subsystems	
C-1'-hydroxylase CruF	Myxoxanthophyll_biosynthesis_in_Cyanobacteria	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2'-O-glycosyltransferase CruG	Myxoxanthophyll_biosynthesis_in_Cyanobacteria	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene cyclase, CruA type	Myxoxanthophyll_biosynthesis_in_Cyanobacteria	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Beta-carotene hydroxylase	Myxoxanthophyll_biosynthesis_in_Cyanobacteria	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene cyclase, CruP type	Myxoxanthophyll_biosynthesis_in_Cyanobacteria	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene beta cyclase (EC 1.14.-.-)	Myxoxanthophyll_biosynthesis_in_Cyanobacteria	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
DNA repair protein RAD51	DNA_repair_and_recombination_eukaryotic	DNA Metabolism	DNA repair
Meiotic recombination protein DMC1	DNA_repair_and_recombination_eukaryotic	DNA Metabolism	DNA repair
DNA repair protein RAD57	DNA_repair_and_recombination_eukaryotic	DNA Metabolism	DNA repair
DNA repair protein RAD51 homolog 4	DNA_repair_and_recombination_eukaryotic	DNA Metabolism	DNA repair
DNA repair protein RAD51 homolog 2	DNA_repair_and_recombination_eukaryotic	DNA Metabolism	DNA repair
DNA repair protein RAD51 homolog 3	DNA_repair_and_recombination_eukaryotic	DNA Metabolism	DNA repair
Light dependent period modulator LdpA	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Circadian input kinase A	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Circadian period extender Pex	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Circadian clock protein KaiA	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Circadian oscillation regulator KaiB	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Circadian clock protein KaiC	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Clock-associated two-component sensor histidine kinase SasA	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Circadian phase modifier	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Group 2 RNA polymerase sigma factor	Cyanobacterial_Circadian_Clock	Cell Division and Cell Cycle	
Tyrosine recombinase xerC	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Integrase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Integrase/recombinase (XerC/CodV family)	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage integrase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage Holliday junction resolvase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage endonuclease	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Site-specific recombinase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Site-specific tyrosine recombinase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage resolvase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage excisionase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Putative phage-encoded enzyme involved in integration-recombination	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage exonuclease (EC 3.1.11.3)	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage exonuclease	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage-associated recombinase	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
Phage inihibitor of recBCD nuclease	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
DNA recombinase, phage-associated	Phage_integration_and_excision	Phages, Prophages, Transposable elements	Bacteriophage integration/excision/lysogeny
CTP:molybdopterin cytidylyltransferase	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Molybdopterin-guanine dinucleotide biosynthesis protein MobA	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Molybdopterin biosynthesis enzyme	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Possible hypoxanthine oxidase XdhD (EC 1.-.-.-)	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical protein YagQ	Molybdopterin_cytosine_dinucleotide	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dihydroxyacetone kinase family protein	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
FIG001802: Putative alkaline-shock protein	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
LSU ribosomal protein L28p	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
Serine/threonine protein kinase PrkC, regulator of stationary phase	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
ATP-dependent DNA helicase RecG (EC 3.6.1.-)	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
Ribosome small subunit-stimulated GTPase EngC	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
Thiamin pyrophosphokinase (EC 2.7.6.2)	A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins	Clustering-based subsystems	Ribosomal Protein L28P relates to a set of uncharacterized proteins
Tricarboxylate transport protein TctC	Tricarboxylate_transport_cassette	Clustering-based subsystems	
Tricarboxylate transport protein TctB	Tricarboxylate_transport_cassette	Clustering-based subsystems	
Tricarboxylate transport membrane protein TctA	Tricarboxylate_transport_cassette	Clustering-based subsystems	
Energy conserving hydrogenase Eha transmembrane protein A	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein B	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein C	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein D	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein E	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein F	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein G	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha proton-sodium antiporter homolog protein H	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein I	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein J	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein K	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein L	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha protein M	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha small subunit homolog (protein N)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha large subunit homolog (protein O)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin (protein P)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin domain (protein P')	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein (protein R)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein (protein S)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated protein, ribokinase homolog (protein T)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated polyferredoxin	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha associated gene 2	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein I2	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein K2	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha ferredoxin (protein P2)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin (protein P3)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein I3	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha transmembrane protein K3	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha protein M2	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Energy conserving hydrogenase Eha polyferredoxin (protein P4)	Energy_conserving_hydrogenase,_Methanococcales-Methanobacteriales-Methanopyrales	Respiration	Reverse electron transport
Virulence regulatory factor PrfA	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Phosphatidylinositol-specific phospholipase C (EC 4.6.1.13)	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Thiol-activated cytolysin	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Zinc metalloproteinase precursor (EC 3.4.24.29)	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Actin-assembly inducing protein ActA precursor	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Broad-substrate range phospholipase C (EC 3.1.4.3)	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Distant similarity with viral glycoprotein gp160 of HIV type 1	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
virulence cluster protein A VclA	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
virulence cluster protein B VclB	Listeria_Pathogenicity_Island_LIPI-1_extended	Phages, Prophages, Transposable elements, Plasmids	Pathogenicity islands
Xanthine/uracil/thiamine/ascorbate permease family protein	Purine_Utilization	Nucleosides and Nucleotides	Purines
Cytosine/purine/uracil/thiamine/allantoin permease family protein	Purine_Utilization	Nucleosides and Nucleotides	Purines
Guanine deaminase (EC 3.5.4.3)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine permease	Purine_Utilization	Nucleosides and Nucleotides	Purines
XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Guanine-hypoxanthine permease	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Beta-hexosaminidase (EC 3.2.1.52)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Uricase (EC 1.7.3.3)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine oxidase (EC 1.17.3.2)	Purine_Utilization	Nucleosides and Nucleotides	Purines
Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine transporter,putative	Purine_Utilization	Nucleosides and Nucleotides	Purines
Xanthine/uracil transporter	Purine_Utilization	Nucleosides and Nucleotides	Purines
Uracil-xanthine permease	Purine_Utilization	Nucleosides and Nucleotides	Purines
beta-hexosaminidase precursor	Purine_Utilization	Nucleosides and Nucleotides	Purines
Allantoin permease	Purine_Utilization	Nucleosides and Nucleotides	Purines
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
DNA mismatch repair protein MutL	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Translation initiation factor 2B beta subunit	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Aconitate hydratase (EC 4.2.1.3)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
proteasome subunit alpha3 (EC 3.4.25.1)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Malate dehydrogenase (EC 1.1.1.37)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Fumarate hydratase class II (EC 4.2.1.2)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Kynurenine 3-monooxygenase (EC 1.14.13.9)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Nucleolar protein Nop56	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Laminin beta-1 chain precursor	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
E-cadherin binding protein E7	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Chloride anion exchanger	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Acylphosphate phosphohydrolase (EC 3.6.1.7)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
ribosomal protein S6 kinase-like 1	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Nuclear protein ZAP3	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Placental growth factor, vascular endothelial growth factor-related protein	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Choline O-acetyltransferase (EC 2.3.1.6)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Vesicular acetylcholine transporter	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
DNA-directed RNA polymerase III 25 kDa polypeptide (EC 2.7.7.6)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Protein-arginine deiminase type III (EC 3.5.3.15)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Protein-arginine deiminase type-1 (EC 3.5.3.15)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Probable cation-transporting ATPase 1	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
rootletin	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Microfibrillar-associated protein 2 precursor	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Map kinase phosphatase-like protein MK-STYX	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
NADPH--cytochrome P450 reductase (EC 1.6.2.4)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Transmembrane protein induced by tumor necrosis factor alpha	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Opsin 3	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Isocitrate dehydrogenase 3 subunit alpha, mitochondrial precursor (EC 1.1.1.41)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
WD repeat protein 61	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
ADAMTS-7 precursor (EC 3.4.24.-)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Calcium and integrin-binding protein 2	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Gonadotropin-regulated long chain acyl-CoA synthetase	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Cellular retinoic acid-binding protein 1	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Isocitrate dehydrogenase 3 subunit beta, mitochondrial precursor (EC 1.1.1.41)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Protein FAM113A	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Transcription factor COE4	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Vacuolar protein sorting 16	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Probable carboxypeptidase X1 precursor (EC 3.4.17.-)	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
poly (ADP-ribose) glycohydrolase	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Heat-shock protein beta-1	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Translocase of inner mitochondrial membrane 23 homolog	CRnot_mitoch_clusters_Euk_1	Experimental Subsystems	
Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-)	YceA	Experimental Subsystems	
Dihydroorotase (EC 3.5.2.3)	YceA	Experimental Subsystems	
RecA protein	YceA	Experimental Subsystems	
Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-)	YceA	Experimental Subsystems	
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)	YceA	Experimental Subsystems	
Rhodanese-related sulfurtransferases	YceA	Experimental Subsystems	
Rhodanese domain protein UPF0176, Firmicutes subgroup	YceA	Experimental Subsystems	
FIG146518: Zn-dependent hydrolases, including glyoxylases	YceA	Experimental Subsystems	
GldH	YceA	Experimental Subsystems	
Rhodanese domain protein, Enterobacterial subgroup, YceA homolog	YceA	Experimental Subsystems	
Cytochrome c-type biogenesis protein CcsA/ResC	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Cytochrome c-type biogenesis protein Ccs1/ResB	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Putative sulfite oxidase subunit YedY	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
FIG001196: Membrane protein YedZ	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Distantly related to membrane protein YedZ	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Magnetosome protein MamZ, permease	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Magnetosome protein MamX	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Magnetosome protein MamD, hemagglutinin motif-containing	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Magnetosome protein MamY	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Metalloreductase STEAP, Six-transmembrane epithelial antigen of prostate	YedY-YedZ_cluster	Experimental Subsystems	Clustering-based subsystems
Magnetosome protein MamF	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamD, hemagglutinin motif-containing	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamC	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamH	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamI	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamE, trypsin-like serine protease	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamK, Actin-like ATPase	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamM, Co/Zn/Cd cation transporter	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamO, serine protease precursor MucD/AlgY-like	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamP, serine protease	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamA, TPR_2 repeat-containing	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamQ, LemA family protein	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamB, Co/Zn/Cd cation transporter	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamS	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamT, cytochrome c mono- and diheme variants	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamZ, permease	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamX	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome Protein Mms6	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamJ	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamL protein	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamN, Na+/H+ antiporter NhaD related	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamR, DNA binding	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamU, diacylglycerol kinase-like	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamV, Co/Zn/Cd cation transporter	Magnetosome	Motility and Chemotaxis	Magnetotaxis
Magnetosome protein MamY	Magnetosome	Motility and Chemotaxis	Magnetotaxis
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	riboflavin_to_FAD	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase (EC 2.7.7.2)	riboflavin_to_FAD	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin kinase (EC 2.7.1.26)	riboflavin_to_FAD	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	riboflavin_to_FAD	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
CTP-dependent archaeal riboflavin kinase (EC 2.7.1.161)	riboflavin_to_FAD	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase archaeal (EC 2.5.1.9)	riboflavin_to_FAD	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Glutamyl-tRNA reductase (EC 1.2.1.70)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen synthase (EC 4.2.1.24)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen deaminase (EC 2.5.1.61)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase (EC 4.2.1.75)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Fe-S protein, homolog of lactate dehydrogenase SO1521	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG143828: Hypothetical protein YbgA	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG000605: protein co-occurring with transport systems (COG1739)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protein of unknown function DUF414	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative lipoprotein SAV1865	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG011501: YycH protein	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
hypothetical protein SA_21	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein SAV1869	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative nitroreductase family protein SACOL0874	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
YjbH-like, GTP pyrophosphokinase domain	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized protein, homolog of B.subtilis yhgC	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized protein UPF0344	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein, ydbT homolog	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein, ydbS homolog	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
DUF1801 domain-containing protein	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5-aminolevulinate synthase (EC 2.3.1.37)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
COG3118: Thioredoxin domain-containing protein EC-YbbN	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein SAV1831	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
transmembrane protein, distant homology with ydbS	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
transmembrane protein, distant homology with ydbT	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Periplasmic/membrane protein associated with DUF414	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative oxidoreductase ferredoxin-type protein, clusters with CPO	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Membrane protein 2, distant similarity to thiosulphate:quinone oxidoreductase DoxD	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Possibly related to ydbT	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Distant homolog of hypothetical protein SA_21	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75)	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized SAV1743 homolog	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative 2	CPO_analysis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CarD-like transcriptional regulator	CarD	Transcriptional regulation	
4Fe-4S ferredoxin, iron-sulfur binding	CarD	Transcriptional regulation	
DNA mismatch repair protein MutS	CarD	Transcriptional regulation	
DNA repair protein RadA	CarD	Transcriptional regulation	
Transcription termination factor Rho	CarD	Transcriptional regulation	
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	CarD	Transcriptional regulation	
ATP-DEPENDENT DNA HELICASE	CarD	Transcriptional regulation	
RNA polymerase sigma factor RpoH-related protein	CarD	Transcriptional regulation	
CarD assoc. peptidase	CarD	Transcriptional regulation	
Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	mycobacteria_acid_response		
Phosphate regulon transcriptional regulatory protein PhoB (SphR)	mycobacteria_acid_response		
Sensor-like histidine kinase senX3 (EC 2.7.13.3)	mycobacteria_acid_response		
PROBABLE ESTERASE/LIPASE LIPF (EC 3.-.-.-)	mycobacteria_acid_response		
Oxidoreductase, short-chain dehydrogenase/reductase family	mycobacteria_acid_response		
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP	mycobacteria_acid_response		
Transcriptional regulatory protein PhoP	mycobacteria_acid_response		
sensor histidine kinase PhoR	mycobacteria_acid_response		
CarD-like transcriptional regulator	CarD_copy	Transcriptional regulation	
4Fe-4S ferredoxin, iron-sulfur binding	CarD_copy	Transcriptional regulation	
DNA mismatch repair protein MutS	CarD_copy	Transcriptional regulation	
DNA repair protein RadA	CarD_copy	Transcriptional regulation	
Transcription termination factor Rho	CarD_copy	Transcriptional regulation	
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	CarD_copy	Transcriptional regulation	
ATP-DEPENDENT DNA HELICASE	CarD_copy	Transcriptional regulation	
Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-)	CarD_copy	Transcriptional regulation	
RNA polymerase sigma factor RpoH-related protein	CarD_copy	Transcriptional regulation	
CarD assoc. peptidase	CarD_copy	Transcriptional regulation	
Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	mycobacteria_acid_response_pub		
Phosphate regulon transcriptional regulatory protein PhoB (SphR)	mycobacteria_acid_response_pub		
Sensor-like histidine kinase senX3 (EC 2.7.13.3)	mycobacteria_acid_response_pub		
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP	mycobacteria_acid_response_pub		
Transcriptional regulatory protein PhoP	mycobacteria_acid_response_pub		
sensor histidine kinase PhoR	mycobacteria_acid_response_pub		
Conjugative transfer protein PSLT093	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer DNA-nicking and unwinding protein TraI	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer fertility inhibition protein FinO	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer mating signal transduction protein TraM	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilin acetylase TraX	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilin protein TraA	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraB	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraC	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraE	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraF	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraH	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraK	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraL	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraU	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraV	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer pilus assembly protein TraW	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TraD	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TraG	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TraN	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TraP	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TraQ	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TraR	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbA	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbB	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbC	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbD	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbE	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbF	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbI	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbJ	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer regulator TraJ	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer regulator TraY	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer surface exclusion protein TraS	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer surface exclusion protein TraT	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
YhfA Protein in tra region of some IncF plasmids	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Ync	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Ynd	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbG	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncF plasmid conjugative transfer protein TrbH	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein PSLT087	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative signal peptidase TrhF	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein s043	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncQ plasmid conjugative transfer protein TraP	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Integral inner membrane protein of type IV secretion complex (VirB6)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Major pilus subunit of type IV secretion complex (VirB2)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Minor pilin of type IV secretion complex (VirB5)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Type IV secretion system protein VirD4	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur (VirB1)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncN plasmid KikA protein	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncQ plasmid conjugative transfer protein TraG	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB3)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncQ plasmid conjugative transfer DNA nicking endonuclease TraR (pTi VirD2 homolog)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein ELI_00880	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein ELI_04330	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncW plasmid conjugative protein TrwB (TraD homolog)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncW plasmid conjugative relaxase protein TrwC (TraI homolog)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbB	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbC	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbD	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbE	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbF	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbG	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbI	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbJ	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbL	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer entry exclusion protein TrbK	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Lipoprotein of type IV secretion complex that spans outer membrane and periplasm (VirB7)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbH	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncQ plasmid conjugative transfer DNA primase TraO (pTi TraA homolog)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Two-component regulator of vir regulon. VirA is a transmembrane histidine kinase	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbN	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
IncQ plasmid conjugative transfer protein TraB	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbA	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbO	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
Conjugative transfer protein TrbP (IncF TraX homolog)	Type_4_secretion_and_conjugative_transfer	Virulence	Type III, Type IV, Type VI, ESAT secretion systems
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	XHY_AlkB_BNL	Experimental Subsystems	
Alkane-1 monooxygenase (EC 1.14.15.3)	XHY_AlkB_BNL	Experimental Subsystems	
Alkane-1 monooxygenase (EC 1.14.15.3), Pmen_0443 homolog	XHY_AlkB_BNL	Experimental Subsystems	
Rubredoxin 1	XHY_AlkB_BNL	Experimental Subsystems	
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	XHY_ACCase_BNL	Experimental Subsystems	
Pyruvate:Oxaloacetate transcarboxylase domain protein	XHY_ACCase_BNL	Experimental Subsystems	
GGDEF domain protein	At1g49350	Experimental Subsystems	
Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	At1g49350	Experimental Subsystems	
Endonuclease IV (EC 3.1.21.2)	At1g49350	Experimental Subsystems	
Pseudouridine kinase (EC 2.7.1.83)	At1g49350	Experimental Subsystems	
Pseudouridine 5'-phosphate glycosidase	At1g49350	Experimental Subsystems	
Probable pyrimidine nucleoside transport protein associated with pseudouridine catabolism	At1g49350	Experimental Subsystems	
Inner membrane transport protein YeiM, in cluster with pseudouridine metabolism operon	At1g49350	Experimental Subsystems	
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	At1g49350	Experimental Subsystems	
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	At1g06730	Experimental Subsystems	
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)	At1g06730	Experimental Subsystems	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	At1g06730	Experimental Subsystems	
Transcriptional regulator KdgR, KDG operon repressor	At1g06730	Experimental Subsystems	
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	At1g06730	Experimental Subsystems	
Uronate isomerase (EC 5.3.1.12)	At1g06730	Experimental Subsystems	
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	At1g06730	Experimental Subsystems	
Starvation sensing protein RspA	At1g06730	Experimental Subsystems	
Gluconate dehydratase (EC 4.2.1.39)	At1g06730	Experimental Subsystems	
Rhombosortase	Rhombosortase	Protein Metabolism	Protein processing and modification
Six-cysteine peptide SCIFF	SCIFF_peptide_maturase_system	Protein Metabolism	Protein processing and modification
SCIFF radical SAM maturase	SCIFF_peptide_maturase_system	Protein Metabolism	Protein processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Early_Pterin_Biosynthesis_Steps_Archaea		
MptE, archaeal 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Early_Pterin_Biosynthesis_Steps_Archaea		
Queuosine biosynthesis QueD, PTPS-I	Early_Pterin_Biosynthesis_Steps_Archaea		
MptD, archaeal dihydroneopterin aldolase	Early_Pterin_Biosynthesis_Steps_Archaea		
MptB, dihydroneopterin 2, 3-cyclic phosphate phosphodiesterase	Early_Pterin_Biosynthesis_Steps_Archaea		
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	Early_Pterin_Biosynthesis_Steps_Archaea		
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Early_Pterin_Biosynthesis_Steps_Archaea		
PTPS-V	Early_Pterin_Biosynthesis_Steps_Archaea		
PTPS-VI	Early_Pterin_Biosynthesis_Steps_Archaea		
Dihydroneopterin aldolase (EC 4.1.2.25)	Early_Pterin_Biosynthesis_Steps_Archaea		
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Early_Pterin_Biosynthesis_Steps_Archaea		
ergothioneine biosynthesis protein EgtB	CBSS-479432.6.peg.320		
Glutamate--cysteine ligase EgtA	CBSS-479432.6.peg.320		
Ergothioneine biosynthesis protein EgtC	CBSS-479432.6.peg.320		
Dimethylhistidine N-methyltransferase (EC 2.1.1.44)	CBSS-479432.6.peg.320		
ergothioneine biosynthesis PLP enzyme EgtE	CBSS-479432.6.peg.320		
Alpha-galactosidase (EC 3.2.1.22)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
MSM (multiple sugar metabolism) operon regulatory protein	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Multiple sugar ABC transporter, substrate-binding protein	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Multiple sugar ABC transporter, membrane-spanning permease protein MsmF	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Multiple sugar ABC transporter, membrane-spanning permease protein MsmG	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Multiple sugar ABC transporter, ATP-binding protein	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-glucosidase (EC 3.2.1.21)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Two-component sensor kinase YesM (EC 2.7.3.-)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Raffinose permease	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Lactose permease	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Glucan 1,6-alpha-glucosidase (EC 3.2.1.70)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Alpha-mannosidase (EC 3.2.1.24)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Hyaluronoglucosaminidase (EC 3.2.1.35)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Sucrose phosphorylase (EC 2.4.1.7)	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
Raffinose operon transcriptional regulatory protein RafR	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, sucrose-specific IIB component (EC 2.7.1.69) / PTS system, sucrose-specific IIC component (EC 2.7.1.69) / PTS system, sucrose-specific IIA component (EC 2.7.1.69)	Sucrose-specific_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)	Sucrose-specific_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Sucrose operon repressor ScrR, LacI family	Sucrose-specific_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Sucrose-specific_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Phosphocarrier protein of PTS system	Sucrose-specific_PTS	Membrane Transport	Sugar Phosphotransferase Systems, PTS
Fructokinase (EC 2.7.1.4)	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
PTS system, sucrose-specific IIB component (EC 2.7.1.69)	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
PTS system, sucrose-specific IIC component (EC 2.7.1.69)	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Sucrose operon repressor ScrR, LacI family	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Sucrose permease, major facilitator superfamily	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
PTS system, sucrose-specific IIA component (EC 2.7.1.69)	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Sucrose specific transcriptional regulator CscR, LacI family	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Family 13 glycosyl hydrolase, row 724	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Sucrose phosphorylase (EC 2.4.1.7)	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Predicted sucrose permease, MFS family, FucP subfamily	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Predicted sucrose-specific TonB-dependent receptor	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Sucrose repressor, LacI family, Shewanella subfamily	Sucrose_utilization	Carbohydrates	Di- and oligosaccharides
Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)	Membrane Transport	ABC transporters
Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)	Membrane Transport	ABC transporters
Phosphonate ABC transporter permease protein phnE1 (TC 3.A.1.9.1)	ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)	Membrane Transport	ABC transporters
Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1)	ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)	Membrane Transport	ABC transporters
Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)	Membrane Transport	ABC transporters
FIG000124: Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	CBSS-192222.1.peg.655	Clustering-based subsystems	
FIG137478: Hypothetical protein	CBSS-192222.1.peg.655	Clustering-based subsystems	
FIG008220: hypothetical protein	CBSS-192222.1.peg.655	Clustering-based subsystems	
Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also]	CBSS-192222.1.peg.655	Clustering-based subsystems	
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	CBSS-192222.1.peg.655	Clustering-based subsystems	
Phosphoheptose isomerase 1 (EC 5.3.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
D-glycero-beta-D-manno-heptose 7-phosphate kinase	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
ADP-heptose synthase (EC 2.7.-.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also]	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Beta-1,4-galactosyltransferase	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Putative two-domain glycosyltransferase	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Phosphoheptose isomerase 2 (EC 5.3.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-galactopyranose mutase (EC 5.4.99.9)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Beta-1,3-glucosyltransferase	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Phosphoheptose isomerase (EC 5.3.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide core biosynthesis protein RfaZ	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide core biosynthesis protein RfaY	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase WaaW (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide 1,6-galactosyltransferase (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
O-antigen ligase	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,2-glucosyltransferase (EC 2.4.1.58)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide core biosynthesis protein RfaS	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide core biosynthesis glycosyltransferase, group 2 family protein (EC 2.4.1.-)	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Heptosyltransferase family protein, lipopolysaccharide core biosynthesis	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-)	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide biosynthesis glycosyltransferase	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-)	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-)	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also]	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
ADP-heptose--lipooligosaccharide heptosyltransferase, putative	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
transferase, hexapeptide repeat family	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide synthesis protein WavE	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
capsular polysaccharide biosynthesis protein	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
capsular polysaccharide biosynthesis protein, putative	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Mannosyltransferase OCH1 and related enzymes	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
lipopolysaccharide biosynthesis protein, putative	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Polysaccharide deacetylase	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
O-antigen ligase	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide synthesis protein WavD	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Outer membrane protein/protective antigen OMA87	CBSS-251221.1.peg.1863	Clustering-based subsystems	
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	CBSS-251221.1.peg.1863	Clustering-based subsystems	
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	CBSS-251221.1.peg.1863	Clustering-based subsystems	
Secretion monitor precursor	CBSS-349966.3.peg.197	Clustering-based subsystems	
FIG006972: hypothetical protein	CBSS-349966.3.peg.197	Clustering-based subsystems	
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	CBSS-349966.3.peg.197	Clustering-based subsystems	
COG0523: Putative GTPases (G3E family)	CobW	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	CobW	Experimental Subsystems	
COG2879, Hypothetical small protein yjiX	CobW	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	CobW	Experimental Subsystems	
Carbon starvation protein A	CobW	Experimental Subsystems	
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	CobW	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	CobW	Experimental Subsystems	
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	CobW	Experimental Subsystems	
C4-type zinc finger protein, DksA/TraR family	CobW	Experimental Subsystems	
Sua5 YciO YrdC YwlC family protein	CobW	Experimental Subsystems	
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	CobW	Experimental Subsystems	
putative periplasmic protein kinase ArgK and related GTPases of G3E family	CobW	Experimental Subsystems	
High-affnity carbon uptake protein Hat/HatR	CobW	Experimental Subsystems	
COG1565: Uncharacterized conserved protein	CobW	Experimental Subsystems	
Nickel responsive regulator NikR	CobW	Experimental Subsystems	
HoxN/HupN/NixA family nickel/cobalt transporter	CobW	Experimental Subsystems	
Glutamate--cysteine ligase EgtA	ergothioneine_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ergothioneine biosynthesis protein EgtB	ergothioneine_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ergothioneine biosynthesis protein EgtC	ergothioneine_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dimethylhistidine N-methyltransferase (EC 2.1.1.44)	ergothioneine_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ergothioneine biosynthesis PLP enzyme EgtE	ergothioneine_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Fumarate reductase subunit C	Succinate_dehydrogenase	Respiration	Electron donating reactions
Fumarate reductase subunit D	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase cytochrome b-556 subunit	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase hydrophobic membrane anchor protein	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Succinate_dehydrogenase	Respiration	Electron donating reactions
Putative succinate dehydrogenase cytochrome b subunit	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase cytochrome b558 subunit	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase cytochrome b subunit	Succinate_dehydrogenase	Respiration	Electron donating reactions
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)	Succinate_dehydrogenase	Respiration	Electron donating reactions
fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase	Succinate_dehydrogenase	Respiration	Electron donating reactions
Fumarate reductase cytochrome b subunit	Succinate_dehydrogenase	Respiration	Electron donating reactions
Hypothetical succinate dehydrogenase membrane anhor protein	Succinate_dehydrogenase	Respiration	Electron donating reactions
putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase cytochrome b560 subunit	Succinate_dehydrogenase	Respiration	Electron donating reactions
Succinate dehydrogenase hydrophobic membrane anchor protein(Nostoc p.)	Succinate_dehydrogenase	Respiration	Electron donating reactions
UDP-sulfoquinovose synthase (EC 3.13.1.1)	EC_3.13.1.-_Hydrolases_acting_on_carbon-sulfur_bonds	Sulfur Metabolism	
Candidate 1: dienelactone hydrolase	Chlorophyll_Degradation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Pheophorbide a oxygenase (EC 1.14.12.20)	Chlorophyll_Degradation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
C3: similar to Vanillate O-demethylase oxygenase	Chlorophyll_Degradation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Phospholipase/lecithinase/hemolysin	Chlorophyll_Degradation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Red chlorophyll catabolite reductase (EC 1.3.1.80)	Chlorophyll_Degradation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Pheophorbidase (EC 3.1.1.82)	Chlorophyll_Degradation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ATP-dependent Clp protease adaptor protein ClpS	ClpS-AAT	Experimental Subsystems	
ATP-dependent Clp protease ATP-binding subunit ClpA	ClpS-AAT	Experimental Subsystems	
Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)	ClpS-AAT	Experimental Subsystems	
Translation initiation factor 1	ClpS-AAT	Experimental Subsystems	
tRNA-Ser-GGA	ClpS-AAT	Experimental Subsystems	
Acyclic terpenes utilization regulator AtuR, TetR family	Acyclic_terpenes_utilization	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
3-hydroxy-3isohexenylglutaryl-CoA:acetate lyase	Acyclic_terpenes_utilization	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Citronellol and citronellal dehydrogenase	Acyclic_terpenes_utilization	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5)	Acyclic_terpenes_utilization	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Citronellyl-CoA dehydrogenase	Acyclic_terpenes_utilization	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isohexenylglutaconyl-CoA hydratase	Acyclic_terpenes_utilization	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Geranyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.5)	Acyclic_terpenes_utilization	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Acetophenone carboxylase subunit Apc1 (EC 6.4.1.8)	Acetophenone_carboxylase_1	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc2 (EC 6.4.1.8)	Acetophenone_carboxylase_1	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc3 (EC 6.4.1.8)	Acetophenone_carboxylase_1	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc4 (EC 6.4.1.8)	Acetophenone_carboxylase_1	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc5 (EC 6.4.1.8)	Acetophenone_carboxylase_1	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoylacetate CoA-ligase	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc5 (EC 6.4.1.8)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc4 (EC 6.4.1.8)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc3 (EC 6.4.1.8)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc2 (EC 6.4.1.8)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetophenone carboxylase subunit Apc1 (EC 6.4.1.8)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Ethylbenzene dehydrogenase alpha subunit (EC 1.17.99.2)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Ethylbenzene dehydrogenase beta subunit (EC 1.17.99.2)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Ethylbenzene dehydrogenase gamma subunit (EC 1.17.99.2)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Ethylbenzene dehydrogenase delta subunit (EC 1.17.99.2)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
(S)-1-phenylethanol dehydrogenase	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoylsuccinyl-CoA thiolase alpha subunit (EC:2.3.1.-)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoylsuccinyl-CoA thiolase beta subunit (EC:2.3.1.-)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
2-[hydroxy(phenyl)methyl]-succinyl-CoA dehydrogenase alpha subunit (EC 1.1.1.35)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
2-[hydroxy(phenyl)methyl]-succinyl-CoA dehydrogenase beta subunit (EC 1.1.1.35)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsE (EC 2.8.3.15)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF (EC 2.8.3.15)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
(R)-benzylsuccinyl-CoA dehydrogenase (EC 1.3.99.21)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Phenylitaconyl-CoA hydratase (EC 4.2.1.-)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzylsuccinate synthase alpha subunit (EC 4.1.99.11)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzylsuccinate synthase beta subunit (EC 4.1.99.11)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzylsuccinate synthase gamma subunit (EC 4.1.99.11)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzylsuccinate synthase activating enzyme (EC 1.97.1.4)	Anaerobic_toluene_and_ethylbenzene_degradation	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Adenine phosphoribosyltransferase (EC 2.4.2.7)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Adenylate cyclase (EC 4.6.1.1)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Probable glutathione S-transferase-related transmembrane protein (EC 2.5.1.18)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Putative hemin-binding lipoprotein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Transcriptional regulator, ArsR family	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Cyclic AMP receptor protein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Glutathione S-transferase (EC 2.5.1.18)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Nicotinamidase (EC 3.5.1.19)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Arsenical pump-driving ATPase (EC 3.6.3.16)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Predicted signal-transduction protein containing cAMP-binding and CBS domains	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
ElaA protein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
cAMP-dependent Kef-type K+ transport system	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Hydrogen cyanide synthase HcnA	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Hydrogen cyanide synthase HcnB	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Hydrogen cyanide synthase HcnC	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
adenylate cyclase ExoY	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Putative insecticidal toxin complex	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Membrane proteins related to metalloendopeptidases	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Purine cyclase-related protein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Prophage Clp protease-like protein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
putative phospholipase D family protein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Putative Heme-regulated two-component response regulator	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Heme-regulated cyclic AMP phosphodiesterase (EC 3.1.4.-)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Probable glutamate/gamma-aminobutyrate antiporter	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
bifunctional hemolysin-adenylate cyclase precursor	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
cyclolysin secretion ATP-binding protein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
cyclolysin secretion protein	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
cyclolysin-activating lysine-acyltransferase	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
putative c'cytochrome	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Glutathione S-transferase, theta (EC 2.5.1.18)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Adenylate/guanylate cyclase (EC 4.6.1.2)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
anthrax toxin moiety, protective antigen, pagA formerly pag, plasmid pXO1, B. anthracis (M22589, P13423)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
calmodulin sensitive adenylate cyclase, edema factor, cya, plasmid pXO1, B. anthracis (M23179, M24074)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
trans-acting positive regulator (Atx A)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
transcriptional activator AtxA, (pXO1-119)	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Nickel-dependent hydrogenase, b-type cytochrome subunit	cAMP_signaling_in_bacteria	Regulation and Cell signaling	
Isoflavone reductase homolog P3 (EC 1.3.1.-)	Phytoalexin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
flavonoid 7-O-methyltransferase (EC 2.1.1.75)	Phytoalexin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
6-deoxychalcone synthase	Phytoalexin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
4-coumarate--CoA ligase 1 (EC 6.2.1.12)	Phytoalexin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
trans-cinnamate 4-monooxygenase (EC 1.14.13.11)	Phytoalexin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
copalyl diphosphate synthase (CPS) (ent-kaurene synthetase A)	Phytoalexin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
sesquiterpene synthase-like protein	Phytoalexin_biosynthesis	Secondary Metabolism	Biosynthesis of phenylpropanoids
Isochorismate synthase (EC 5.4.4.2) [enantio-pyochelin] siderophore	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Isochorismate pyruvate-lyase (EC 4.2.99.21) [enantio-pyochelin] siderophore	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Enantio-pyochelin biosynthetic protein PchC, predicted thioesterase	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [enantio-pyochelin] siderophore	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Enantio-pyochelin biosynthetic protein PchK, putative reductoisomerase	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Dihydroaeruginoate synthetase PchE, non-ribosomal peptide synthetase modules	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Enantio-pyochelin synthetase PchF, non-ribosomal peptide synthetase module	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Outer membrane receptor for ferric enantio-pyochelin	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
ABC efflux pump, fused inner membrane and ATPase subunits in pyochelin gene cluster	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Transcriptional regulator PchR	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Ferric enantio-pyochelin transport system permease protein	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Ferric enantio-pyochelin transport system ATP-binding protein	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Ferric enantio-pyochelin transport system periplasmic substrate-binding protein	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Probable MFS transporter in enantio-pyochelin gene cluster	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Isochorismate synthase (EC 5.4.4.2) [pyochelin] siderophore	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Isochorismate pyruvate-lyase (EC 4.2.99.21) [pyochelin] siderophore	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Pyochelin biosynthetic protein PchC, predicted thioesterase	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [pyochelin] siderophore	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Pyochelin biosynthetic protein PchG, oxidoreductase (NAD-binding)	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Pyochelin synthetase PchF, non-ribosomal peptide synthetase module	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Outer membrane receptor for ferric-pyochelin FptA	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Hypothetical protein FtpB in pyochelin gene cluster	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Putative iron-regulated membrane protein FtpC in pyochelin gene cluster	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
Inner-membrane permease FptX, ferripyochelin	Siderophore_pyochelin	Iron acquisition and metabolism	Siderophores
D-malic enzyme (EC 1.1.1.83)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Malate Na(+) symporter	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Malate permease	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Malolactic enzyme (EC 1.-.-.-)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
NAD-dependent malic enzyme (EC 1.1.1.38)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
NADP-dependent malic enzyme (EC 1.1.1.40)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Pyruvate carboxylase (EC 6.4.1.1)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Pyruvate-utilizing enzyme, similar to phosphoenolpyruvate synthase	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Two-component response regulator, malate (EC 2.7.3.-)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Two-component sensor histidine kinase, malate (EC 2.7.3.-)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Biotin carboxyl carrier protein	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Pyruvate carboxylase subunit A (EC 6.4.1.1)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Pyruvate carboxylase subunit B (biotin-containing) (EC 6.4.1.1)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Malolactic regulator	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Biotin carboxyl carrier protein of oxaloacetate decarboxylase	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxylase, archaeal (EC 4.1.1.31)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase involved in citrate fermentation, predicted (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Pyruvate:Oxaloacetate transcarboxylase domain protein	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase involved in citrate fermentation (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Membrane protein associated with oxaloacetate decarboxylase	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
PEP/pyruvate binding domain protein	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	Carbohydrates	Central carbohydrate metabolism
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Pyruvate carboxylase subunit A (EC 6.4.1.1)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Pyruvate carboxylase subunit B (biotin-containing) (EC 6.4.1.1)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Pyruvate carboxylase (EC 6.4.1.1)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Geranyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.5)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
2-oxoglutarate carboxylase, large subunit (EC 6.4.1.7)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
2-oxoglutarate carboxylase, small subunit (EC 6.4.1.7)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetone carboxylase, alpha subunit (EC 6.4.1.6)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetone carboxylase, beta subunit (EC 6.4.1.6)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetone carboxylase, gamma subunit (EC 6.4.1.6)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetophenone carboxylase subunit Apc1 (EC 6.4.1.8)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetophenone carboxylase subunit Apc2 (EC 6.4.1.8)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetophenone carboxylase subunit Apc3 (EC 6.4.1.8)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetophenone carboxylase subunit Apc4 (EC 6.4.1.8)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetyl-coenzyme A carboxyl transferase (EC 6.4.1.2)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
Acetophenone carboxylase subunit Apc5 (EC 6.4.1.8)	EC_6.4.1.-_Ligases_that_form_carbon-carbon_bonds	Central metabolism	
tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)	tRNA_mods_37		
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	tRNA_mods_37		
GTPase and tRNA-U34 5-formylation enzyme TrmE	tRNA_mods_37		
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	tRNA_mods_37		
5-methylaminomethyl-2-thiouridine-forming enzyme mnmC	tRNA_mods_37		
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	tRNA_mods_37		
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	tRNA_mods_37		
tRNA-guanine transglycosylase (EC 2.4.2.29)	tRNA_mods_37		
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	tRNA_mods_37		
glutamyl-Q-tRNA synthetase	tRNA_mods_37		
tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA_mods_37		
tRNA (5-methoxyuridine) 34 synthase	tRNA_mods_37		
Predicted P-loop ATPase fused to an acetyltransferase COG1444	tRNA_mods_37		
tRNA (cytosine32/34-2'-O-)-methyltransferase (EC 2.1.1.-)	tRNA_mods_37		
tRNA specific adenosine-34 deaminase subunit Tad2p	tRNA_mods_37		
tRNA specific adenosine-34 deaminase subunit Tad3p	tRNA_mods_37		
tRNA (cm5uracil34-C5-)-methyltranferase (EC 2.1.1.-)	tRNA_mods_37		
n-type ATP pyrophosphatase superfamily / TilS and TtcA-like	tRNA_mods_37		
Urm1p Ubiquitin like protein involve in thiolation of mcm5Us4 in tRNA	tRNA_mods_37		
Ncs2p involved in thiolation of mcm5Us4 in tRNA	tRNA_mods_37		
tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)	tRNAmodification_position_34		
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	tRNAmodification_position_34		
GTPase and tRNA-U34 5-formylation enzyme TrmE	tRNAmodification_position_34		
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	tRNAmodification_position_34		
5-methylaminomethyl-2-thiouridine-forming enzyme mnmC	tRNAmodification_position_34		
Selenophosphate-dependent tRNA 2-selenouridine synthase	tRNAmodification_position_34		
Selenide,water dikinase (EC 2.7.9.3)	tRNAmodification_position_34		
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	tRNAmodification_position_34		
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	tRNAmodification_position_34		
tRNA-guanine transglycosylase (EC 2.4.2.29)	tRNAmodification_position_34		
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	tRNAmodification_position_34		
glutamyl-Q-tRNA synthetase	tRNAmodification_position_34		
tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNAmodification_position_34		
tRNA (5-methoxyuridine) 34 synthase	tRNAmodification_position_34		
Predicted P-loop ATPase fused to an acetyltransferase COG1444	tRNAmodification_position_34		
Ncs2p involved in thiolation of mcm5Us4 in tRNA	tRNAmodification_position_34		
tRNA (cytosine32/34-2'-O-)-methyltransferase (EC 2.1.1.-)	tRNAmodification_position_34		
tRNA specific adenosine-34 deaminase subunit Tad2p	tRNAmodification_position_34		
tRNA specific adenosine-34 deaminase subunit Tad3p	tRNAmodification_position_34		
tRNA (cm5uracil34-C5-)-methyltranferase (EC 2.1.1.-)	tRNAmodification_position_34		
n-type ATP pyrophosphatase superfamily / TilS and TtcA-like	tRNAmodification_position_34		
Urm1p Ubiquitin like protein involve in thiolation of mcm5Us4 in tRNA	tRNAmodification_position_34		
histone acetyltransferase, ELP3 family	tRNAmodification_position_34		
Lipid A export ATP-binding/permease protein MsbA	ZZ_gjo_need_homes	Miscellaneous	
Pole remodelling regulatory diguanylate cyclase	ZZ_gjo_need_homes	Miscellaneous	
Proposed peptidoglycan lipid II flippase MurJ	ZZ_gjo_need_homes	Miscellaneous	
Protein secretion chaperonin CsaA	ZZ_gjo_need_homes	Miscellaneous	
Quinone oxidoreductase (EC 1.6.5.5)	ZZ_gjo_need_homes	Miscellaneous	
Na+/H+ antiporter	ZZ_gjo_need_homes	Miscellaneous	
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	ZZ_gjo_need_homes	Miscellaneous	
Transcription accessory protein (S1 RNA-binding domain)	ZZ_gjo_need_homes	Miscellaneous	
Proton/aspartate symport protein	ZZ_gjo_need_homes	Miscellaneous	
Proton/glutamate symport protein	ZZ_gjo_need_homes	Miscellaneous	
Sodium/glutamate symport protein	ZZ_gjo_need_homes	Miscellaneous	
Phage-encoded chromosome degrading nuclease YokF	ZZ_gjo_need_homes	Miscellaneous	
MFS superfamily export protein YceL	ZZ_gjo_need_homes	Miscellaneous	
Na+/H+ antiporter NhaB	ZZ_gjo_need_homes	Miscellaneous	
Protein of unknown function DUF81	ZZ_gjo_need_homes	Miscellaneous	
Protein of unknown function YceH	ZZ_gjo_need_homes	Miscellaneous	
Putative heat shock protein YegD	ZZ_gjo_need_homes	Miscellaneous	
Putative membrane protein YfcA	ZZ_gjo_need_homes	Miscellaneous	
Tyrosine-specific transport protein	ZZ_gjo_need_homes	Miscellaneous	
Virulence factor MviM	ZZ_gjo_need_homes	Miscellaneous	
Putative permease PerM (= YfgO)	ZZ_gjo_need_homes	Miscellaneous	
LysR family transcriptional regulator clustered with dicarboxylate transport	ZZ_gjo_need_homes	Miscellaneous	
Phosphatidylcholine synthase (EC 2.7.8.24)	ZZ_gjo_need_homes	Miscellaneous	
Putative permease often clustered with de novo purine synthesis	ZZ_gjo_need_homes	Miscellaneous	
Mitochondrial processing peptidase-like protein (EC 3.4.24.64)	ZZ_gjo_need_homes	Miscellaneous	
Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated	ZZ_gjo_need_homes	Miscellaneous	
Putative GTP-binding protien TM0445	ZZ_gjo_need_homes	Miscellaneous	
Cephalosporin hydroxylase	ZZ_gjo_need_homes	Miscellaneous	
Phosphatidyl-N-methylethanolamine N-methyltransferase (EC 2.1.1.71)	ZZ_gjo_need_homes	Miscellaneous	
GTP-binding protein RBG1	ZZ_gjo_need_homes	Miscellaneous	
Cob(I)alamin adenosyltransferase fragment	ZZ_gjo_need_homes	Miscellaneous	
Microcompartment protein protein similar to PduA/PduJ	ZZ_gjo_need_homes	Miscellaneous	
Hydroxylamine oxidoreductase precursor (EC 1.7.3.4)	ZZ_gjo_need_homes	Miscellaneous	
Protein of unknown function DUF81, type 2	ZZ_gjo_need_homes	Miscellaneous	
Peptidyl-tRNA hydrolase, archaeal type (EC 3.1.1.29)	ZZ_gjo_need_homes	Miscellaneous	
AMP/CMP kinase AK6	ZZ_gjo_need_homes	Miscellaneous	
GTP-binding protein, gtp1/obg family	ZZ_gjo_need_homes	Miscellaneous	
RNase L inhibitor	ZZ_gjo_need_homes	Miscellaneous	
Uncharacterized ATP-dependent helicase MJ0294	ZZ_gjo_need_homes	Miscellaneous	
Vitamin B12 ABC transporter, ATPase component BtuD	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Queuosine Biosynthesis QueC ATPase	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
AMP nucleosidase (EC 3.2.2.4)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii] COG2102: Predicted ATPases of PP-loop superfamily IPR002761: Domain of unknown function DUF71: B12 cluster	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Choline kinase (EC 2.7.1.32)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duf71: Diphthamide synthesis Dph6	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG01199686: hypothetical protein	B12-Duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Aspartate--ammonia ligase (EC 6.3.1.1)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
Glutamine synthetase type I (EC 6.3.1.2)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
Aspartate racemase (EC 5.1.1.13)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
D-aspartate ligase (EC 6.3.1.12)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
Glutathionylspermidine synthase (EC 6.3.1.8)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
NMN synthetase (EC 6.3.1.-)	EC_6.3.1.-_Acid--ammonia_(or_amide)_ligases_(amide_synthases)	Experimental Subsystems	
Gamma-glutamyltranspeptidase (EC 2.3.2.2)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Glutamate--cysteine ligase (EC 6.3.2.2)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Glutathione synthetase (EC 6.3.2.3)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Membrane alanine aminopeptidase N (EC 3.4.11.2)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Tripeptide aminopeptidase (EC 3.4.11.4)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Predicted alternative glutathione synthetase (EC 6.3.2.3)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
5-oxoprolinase (EC 3.5.2.9)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Similar to Glutathione synthetase	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), C-terminal domain	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), N-terminal domain	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Similar to Glutamate--cysteine ligase (EC 6.3.2.2), function unknown	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Putative exported protein clustered with Gamma-glutamyltranspeptidase	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Glutamate--cysteine ligase archaeal (EC 6.3.2.2)	Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle	Stress Response	Oxidative stress
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
Pantoate--beta-alanine ligase (EC 6.3.2.1)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
D-alanine--D-alanine ligase (EC 6.3.2.4)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
D-alanine--D-alanine ligase B (EC 6.3.2.4)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
D-alanine--D-serine ligase (EC 6.3.2.35)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
D-alanine--D-alanine ligase A (EC 6.3.2.4)	EC_6.3.2.-_Acid--D-amino-acid_ligases_(peptide_synthases)	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Aspartate aminotransferase (EC 2.6.1.1)	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Aspartokinase (EC 2.7.2.4)	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Biotin synthesis protein BioC	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Competence protein F homolog, phosphoribosyltransferase domain	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Enoyl-CoA hydratase/isomerase family protein, may be related to NAD-dependent histone deacetylation	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18)	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Histone acetyltransferase HPA2 and related acetyltransferases	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
MaoC domain protein dehydratase	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
MaoC-like dehydratase	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
NTP pyrophosphohydrolases including oxidative damage repair enzymes	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Predicted aminoglycoside phosphotransferase	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Probable transmembrane protein	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Putative acyl-CoA dehydrogenase oxidoreductase (EC 1.3.99.3), may be related to NAD-dependent histone acetylation	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
identified by similarity to GB:AAK22812.1	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
match to protein family HMM PF06676	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Peptidase M14, carboxypeptidase A	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Predicted carboxypeptidase	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Putative pimeloyl-CoA dehydrogenase (Small subunit), PimD-like (EC 1.3.99.-)	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Glutaredoxin 3	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	CBSS-216591.1.peg.168	Clustering-based subsystems	May be related to ADP-phosphoribose and NAD-dependent acetylation
Biotin synthase (EC 2.8.1.6)	SPT_MSHPAK		
Serine palmitoyltransferase (EC 2.3.1.50)	SPT_MSHPAK		
Putative fatty acid desaturase (EC 1.14.-.-)	SPT_MSHPAK		
3-dehydrosphinganine reductase (EC 1.1.1.102)	SPT_MSHPAK		
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	SPT_MSHPAK		
Biotin synthesis protein BioC	SPT_MSHPAK		
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	SPT_MSHPAK		
Dethiobiotin synthetase (EC 6.3.3.3)	SPT_MSHPAK		
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	SPT_MSHPAK		
L-threonine 3-dehydrogenase (EC 1.1.1.103)	SPT_MSHPAK		
Acyl-CoA-dependent ceramide synthase (EC 2.3.1.24)	SPT_MSHPAK		
ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)	SPT_MSHPAK		
ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-)	SPT_MSHPAK		
Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-)	SPT_MSHPAK		
FIG010505: hypothetical protein	SPT_MSHPAK		
FIG143216: NAD-dependent epimerase/dehydratase family protein	SPT_MSHPAK		
AMP-binding enzyme, associated with serine palmitoyltransferase	SPT_MSHPAK		
Catalyzes the hydrolysis of ceramide to fatty acid and sphingosine (EC 3.5.1.23)	SPT_MSHPAK		
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein CbiG	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-3b C17-methyltransferase	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6 synthase, anaerobic	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyric acid synthase (EC 6.3.5.10)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyrinic acid A,C-diamide synthase	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Threonine kinase in B12 biosynthesis	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative amidotransferase similar to cobyric acid synthase	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein BluB	Cobalamin_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CTP synthase (EC 6.3.4.2)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Adenylosuccinate synthetase (EC 6.3.4.4)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Argininosuccinate synthase (EC 6.3.4.5)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Queuosine Biosynthesis QueC ATPase	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
Urea carboxylase (EC 6.3.4.6)	EC_6.3.4.-_Ligases_that_form_carbon-nitrogen_bonds	Miscellaneous	
3-hydroxyphenylpropionic acid transporter	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Trans-feruloyl-CoA synthase (EC 6.2.1.34)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Lignostilbene-alpha,beta-dioxygenase and related enzymes	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Probable FERULIC acid hydratase protein	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Protein involved in meta-pathway of phenol degradation	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative 3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase oxidoreductase protein (EC 1.1.1.50)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
putative 3-hydroxyphenylpropionic acid porine	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
4-hydroxybenzoate transporter	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
4-hydroxycinnamoyl CoA hydratase/lyase (Enoyl-CoA hydratase/lyase) (EC 4.2.1.17)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative hydroxycinnamate transporter	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Salicylate hydroxylase (EC 1.14.13.1)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Transcriptional regulator for ferulate or vanillate catabolism	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
hydroxycinnamate specific porine	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
lignostilbene-alpha,beta-dioxygenase	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
vannilate transporter VanK	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Acyl coenzyme A dehydrogenase (EC 1.3.99.13)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Chlorogenate esterase	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
putative porin for vanillate trafficking (VanP)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative phthalate 4,5-dioxygenase oxygenase subunit (OhpA2)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Putative phthalate 4,5-dioxygenase reductase subunit (OhpA1)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Probable FERULOYL-CoA synthetase protein	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
4,5-dihydroxyphthalate decarboxylase (EC 4.1.1.55)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phthalate 4,5-dioxygenase oxygenase subunit (EC 1.14.12.7)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-)	Phenylpropanoid_compound_degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	EC_6.3.3.-_Cyclo-ligases_forming_carbon-nitrogen_bonds	Experimental Subsystems	
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	EC_6.3.3.-_Cyclo-ligases_forming_carbon-nitrogen_bonds	Experimental Subsystems	
Dethiobiotin synthetase (EC 6.3.3.3)	EC_6.3.3.-_Cyclo-ligases_forming_carbon-nitrogen_bonds	Experimental Subsystems	
(Carboxyethyl)arginine beta-lactam-synthase (EC 6.3.3.4)	EC_6.3.3.-_Cyclo-ligases_forming_carbon-nitrogen_bonds	Experimental Subsystems	
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	EC_3.4.17.-_Metallocarboxypeptidases	Protein Metabolism	Protein degradation
Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)	EC_3.4.17.-_Metallocarboxypeptidases	Protein Metabolism	Protein degradation
Thermostable carboxypeptidase 1 (EC 3.4.17.19)	EC_3.4.17.-_Metallocarboxypeptidases	Protein Metabolism	Protein degradation
Carboxypeptidase T (EC 3.4.17.18)	EC_3.4.17.-_Metallocarboxypeptidases	Protein Metabolism	Protein degradation
Glutamate carboxypeptidase (EC 3.4.17.11)	EC_3.4.17.-_Metallocarboxypeptidases	Protein Metabolism	Protein degradation
Zinc D-Ala-D-Ala carboxypeptidase (EC 3.4.17.14)	EC_3.4.17.-_Metallocarboxypeptidases	Protein Metabolism	Protein degradation
Microbial collagenase, secreted (EC 3.4.24.3)	EC_3.4.24.-_Metalloendopeptidases	Protein Metabolism	Protein degradation
Vibriolysin, extracellular zinc protease (EC 3.4.24.25)	EC_3.4.24.-_Metalloendopeptidases	Protein Metabolism	Protein degradation
Pseudolysin, extracellular zinc protease (EC 3.4.24.26)	EC_3.4.24.-_Metalloendopeptidases	Protein Metabolism	Protein degradation
Glycyl-glycine endopeptidase LytM precursor (EC 3.4.24.75)	EC_3.4.24.-_Metalloendopeptidases	Protein Metabolism	Protein degradation
Microbial collagenase (EC 3.4.24.3)	EC_3.4.24.-_Metalloendopeptidases	Protein Metabolism	Protein degradation
Bacillolysin, extracellular neutral metalloprotease (EC 3.4.24.28)	EC_3.4.24.-_Metalloendopeptidases	Protein Metabolism	Protein degradation
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	EC_3.4.19.-_Omega_peptidases	Protein Metabolism	Protein degradation
Isoaspartyl aminopeptidase (EC 3.4.19.5)	EC_3.4.19.-_Omega_peptidases	Protein Metabolism	Protein degradation
Acylamino-acid-releasing enzyme (EC 3.4.19.1)	EC_3.4.19.-_Omega_peptidases	Protein Metabolism	Protein degradation
Gamma-D-glutamyl-meso-diaminopimelate peptidase (EC 3.4.19.11)	EC_3.4.19.-_Omega_peptidases	Protein Metabolism	Protein degradation
Glutamyl endopeptidase precursor (EC 3.4.21.19), blaSE	EC_3.4.21.-_Serine_endopeptidase	Protein Metabolism	Protein degradation
Prolyl endopeptidase (EC 3.4.21.26)	EC_3.4.21.-_Serine_endopeptidase	Protein Metabolism	Protein degradation
Lysyl endopeptidase (EC 3.4.21.50)	EC_3.4.21.-_Serine_endopeptidase	Protein Metabolism	Protein degradation
Glutamyl endopeptidase precursor (EC 3.4.21.19), serine proteinase SspA	EC_3.4.21.-_Serine_endopeptidase	Protein Metabolism	Protein degradation
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)	EC_3.4.13.-_Dipeptidases	Protein Metabolism	Protein degradation
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)	EC_3.4.13.-_Dipeptidases	Protein Metabolism	Protein degradation
Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21)	EC_3.4.13.-_Dipeptidases	Protein Metabolism	Protein degradation
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	YhgH		
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	YhgH		
Biotin synthase (EC 2.8.1.6)	YhgH		
Competence protein F homolog, phosphoribosyltransferase domain	YhgH		
Dethiobiotin synthetase (EC 6.3.3.3)	YhgH		
Ribosomal subunit interface protein	YhgH		
tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)	YhgH		
Biotin synthesis protein BioC	YhgH		
FIG147869: Carbon-nitrogen hydrolase	YhgH		
Glutaredoxin 3 (Grx2)	YhgH		
SAM-dependent methyltransferase, BioC-like	YhgH		
Biotin synthesis protein bioK	YhgH		
Biotin synthesis protein BioH	YhgH		
Biotin synthesis protein BioG	YhgH		
Biotin synthesis protein bioZ	YhgH		
Cytosol aminopeptidase PepA (EC 3.4.11.1)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Methionine aminopeptidase (EC 3.4.11.18)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Glutamyl aminopeptidase (EC 3.4.11.7)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Membrane alanine aminopeptidase N (EC 3.4.11.2)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Proline iminopeptidase (EC 3.4.11.5)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Xaa-Pro aminopeptidase (EC 3.4.11.9)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
Peptidase B (EC 3.4.11.23)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
beta-peptidyl aminopeptidase (EC 3.4.11.25)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
D-aminopeptidase (EC 3.4.11.19)	EC_3.4.11.-_Aminopeptidases	Protein Metabolism	Protein degradation
D-alanine--D-alanine ligase (EC 6.3.2.4)	EC_6.1.2.-_Acid--alcohol_ligases_(ester_synthases)	Experimental Subsystems	
D-lactate dehydrogenase (EC 1.1.1.28)	EC_6.1.2.-_Acid--alcohol_ligases_(ester_synthases)	Experimental Subsystems	
D-alanine--D-serine ligase (EC 6.3.2.35)	EC_6.1.2.-_Acid--alcohol_ligases_(ester_synthases)	Experimental Subsystems	
D-alanyl-D-alanine dipeptidase (EC 3.4.13.22)	EC_6.1.2.-_Acid--alcohol_ligases_(ester_synthases)	Experimental Subsystems	
D-alanine--D-lactate ligase (EC 6.1.2.1)	EC_6.1.2.-_Acid--alcohol_ligases_(ester_synthases)	Experimental Subsystems	
DNA mismatch repair protein MutL	MutH-MutL	Experimental Subsystems	
DNA mismatch repair endonuclease MutH	MutH-MutL	Experimental Subsystems	
Acylphosphate phosphohydrolase (EC 3.6.1.7), putative	Acylphosphatase	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Macromolecular_synthesis_operon	Cell Division and Cell Cycle	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Macromolecular_synthesis_operon	Cell Division and Cell Cycle	
DNA primase (EC 2.7.7.-)	Macromolecular_synthesis_operon	Cell Division and Cell Cycle	
RNA polymerase sigma factor RpoD	Macromolecular_synthesis_operon	Cell Division and Cell Cycle	
SSU ribosomal protein S21p	Macromolecular_synthesis_operon	Cell Division and Cell Cycle	
Transamidase GatB domain protein	Macromolecular_synthesis_operon	Cell Division and Cell Cycle	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Macromolecular_synthesis_operon	Cell Division and Cell Cycle	
FIG056333: sensor	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
FIG006611: nucleotidyltransferase	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
FIG041266: ATP-dependent nuclease subunit B	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
FIG061771: ATP-dependent nuclease subunit A	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
CBSS-272943.3.peg.263: thioredoxin	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
FIG001393: Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-)	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
CBSS-272943.3.peg.263: hypothetical protein	CBSS-272943.3.peg.263	Clustering-based subsystems	DNA metabolism
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F1 (as in PMID19099556)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Exopolysaccharide biosynthesis transcriptional activator EpsA	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Prephenate dehydratase (EC 4.2.1.51)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Shikimate kinase I (EC 2.7.1.71)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Tyrosine-protein kinase EpsD (EC 2.7.10.2)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Tyrosine-protein kinase transmembrane modulator EpsC	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F4 (as in PMID19099556)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily M (as in PMID19099556)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Manganese-dependent protein-tyrosine phosphatase (EC 3.1.3.48)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Bifunctional autolysin Atl	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
FmtA protein involved in methicillin resistance	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
FmtC (MrpF) protein involved in methicillin resistance	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Peptide methionine sulfoxide reductase regulator MsrR	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily S (as in PMID19099556)	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
Exopolysaccharide biosynthesis transcription antiterminator, LytR family	Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	Regulation and Cell signaling	
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
DNA topoisomerase I (EC 5.99.1.2)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Helicase PriA essential for oriC/DnaA-independent DNA replication	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Peptide deformylase (EC 3.5.1.88)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Ribonuclease HII (EC 3.1.26.4)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Serine/threonine protein kinase PrkC, regulator of stationary phase	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Trk system potassium uptake protein TrkA	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Zn-dependent hydrolase, RNA-metabolising	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
tRNA:m(5)U-54 MTase gid	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Uncharacterized protein with LysM domain, COG1652	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-)	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Protein of unknown function Smg	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Similar to C-terminal Zn-finger domain of DNA topoisomerase I	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
GTP-sensing transcriptional pleiotropic repressor codY	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Hydrolase (HAD superfamily) in cluster with DUF1447	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Protein of unknown function DUF1447	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Protein serine/threonine phosphatase PrpC, regulation of stationary phase	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
cytochrome d ubiquinol oxidase, subunit II-related protein	Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	Clustering-based subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	YgjD_and_YeaZ	Cell Division and Cell Cycle	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YgjD_and_YeaZ	Cell Division and Cell Cycle	
p53-regulating protein kinase (human PRPK/yeast YGR262c)	YgjD_and_YeaZ	Cell Division and Cell Cycle	
FIG001674: hypothetical protein	CBSS-584.1.peg.2497	Clustering-based subsystems	A hypothetical (YfcN) clustering with an L3 methyltransferase, SixA and AroC
Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p	CBSS-584.1.peg.2497	Clustering-based subsystems	A hypothetical (YfcN) clustering with an L3 methyltransferase, SixA and AroC
Phosphohistidine phosphatase SixA	CBSS-584.1.peg.2497	Clustering-based subsystems	A hypothetical (YfcN) clustering with an L3 methyltransferase, SixA and AroC
Chorismate synthase (EC 4.2.3.5)	CBSS-584.1.peg.2497	Clustering-based subsystems	A hypothetical (YfcN) clustering with an L3 methyltransferase, SixA and AroC
FIG002708: Protein SirB1	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
Peptide chain release factor 1	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
Glutamyl-tRNA reductase (EC 1.2.1.70)	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
Outer membrane lipoprotein LolB precursor	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
FIG002082: Protein sirB2	A_Gammaproteobacteria_Cluster_Relating_to_Translation	Clustering-based subsystems	Ribosome-related cluster
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	CBSS-216600.3.peg.802	Clustering-based subsystems	
Peptide chain release factor 1	CBSS-216600.3.peg.802	Clustering-based subsystems	
FIG069887: hypothetical protein	CBSS-216600.3.peg.802	Clustering-based subsystems	
COG0613, Predicted metal-dependent phosphoesterases (PHP family)	CBSS-314276.3.peg.1499	Clustering-based subsystems	
Hypothetical YciO protein, TsaC/YrdC paralog	CBSS-314276.3.peg.1499	Clustering-based subsystems	
Segregation and condensation protein A	CBSS-314276.3.peg.1499	Clustering-based subsystems	
Segregation and condensation protein B	CBSS-314276.3.peg.1499	Clustering-based subsystems	
Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)	CBSS-314276.3.peg.1499	Clustering-based subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
Hypothetical YciO protein, TsaC/YrdC paralog	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
Alanine racemase (EC 5.1.1.1)	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
p53-regulating protein kinase (human PRPK/yeast YGR262c)	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
COG0613, Predicted metal-dependent phosphoesterases (PHP family)	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases	YrdC-YciO-Sua5_and_associated_protein_families_(gjo_temp)	RNA Metabolism	RNA processing and modification
putative toxic anion resistance protein	Putative_Toxic_Anion_Resistance_Operon	Clustering-based subsystems	Streptococcus cluster: maybe related to transport
Hypothetical protein spyM18_0155	Putative_Toxic_Anion_Resistance_Operon	Clustering-based subsystems	Streptococcus cluster: maybe related to transport
Diadenylate cyclase spyDAC	Diadenylate_cyclase_cluster	Cell Division and Cell Cycle	 Bacterial checkpoint control
Uncharacterized secreted protein associated with spyDAC	Diadenylate_cyclase_cluster	Cell Division and Cell Cycle	 Bacterial checkpoint control
Phosphoglucosamine mutase (EC 5.4.2.10)	Diadenylate_cyclase_cluster	Cell Division and Cell Cycle	 Bacterial checkpoint control
Particulate methane monooxygenase A-subunit (EC 1.14.13.25)	Particulate_methane_monooxygenase_(pMMO)	Carbohydrates	One-carbon Metabolism
Particulate methane monooxygenase B-subunit (EC 1.14.13.25)	Particulate_methane_monooxygenase_(pMMO)	Carbohydrates	One-carbon Metabolism
Particulate methane monooxygenase C-subunit (EC 1.14.13.25)	Particulate_methane_monooxygenase_(pMMO)	Carbohydrates	One-carbon Metabolism
Chromate transport protein ChrA	BobNewSubsystem	Experimental Subsystems	
Chromate resistance protein ChrB	BobNewSubsystem	Experimental Subsystems	
Cell division protein FtsK	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Ferric uptake regulation protein FUR	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Peptide deformylase (EC 3.5.1.88)	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Trk system potassium uptake protein TrkA	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Zn-dependent hydrolase, RNA-metabolising	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Metallo-beta-lactamase family protein, RNA-specific	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Hydrolase (HAD superfamily) in cluster with DUF1447	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Protein of unknown function DUF1447	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Transcriptional regulator in cluster with Zn-dependent hydrolase	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Ribonuclease J2 (endoribonuclease in RNA processing)	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
Ribonuclease J1 (endonuclease and 5' exonuclease)	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
cytochrome d ubiquinol oxidase, subunit II-related protein	Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	Clustering-based subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
Hypothetical YciO protein, TsaC/YrdC paralog	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
Alanine racemase (EC 5.1.1.1)	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
COG0613, Predicted metal-dependent phosphoesterases (PHP family)	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
p53-regulating protein kinase (human PRPK/yeast YGR262c)	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases	YrdC-YciO-Sua5_and_associated_protein_families	RNA Metabolism	RNA processing and modification
Dihydrofolate reductase (EC 1.5.1.3)	COG4319	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 1	COG4319	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin aldolase (EC 4.1.2.25)	COG4319	Miscellaneous	Plant-Prokaryote comparative genomics
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	COG4319	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydropteroate synthase (EC 2.5.1.15)	COG4319	Miscellaneous	Plant-Prokaryote comparative genomics
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	COG4319	Miscellaneous	Plant-Prokaryote comparative genomics
Alternative dihydrofolate reductase 3	COG4319	Miscellaneous	Plant-Prokaryote comparative genomics
Ribulokinase (EC 2.7.1.16)	Experimental-COG3533	Experimental Subsystems	
L-arabinose isomerase (EC 5.3.1.4)	Experimental-COG3533	Experimental Subsystems	
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Experimental-COG3533	Experimental Subsystems	
Arabinose-proton symporter	Experimental-COG3533	Experimental Subsystems	
Alpha-arabinosides ABC transport system, permease protein AraQ	Experimental-COG3533	Experimental Subsystems	
Alpha-arabinosides ABC transport system, permease protein AraN	Experimental-COG3533	Experimental Subsystems	
Alpha-arabinosides ABC transport system, permease protein AraP	Experimental-COG3533	Experimental Subsystems	
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Experimental-COG3533	Experimental Subsystems	
Transcriptional repressor of the arabinose operon	Experimental-COG3533	Experimental Subsystems	
Arabinose operon protein AraM	Experimental-COG3533	Experimental Subsystems	
Arabinose operon protein AraL	Experimental-COG3533	Experimental Subsystems	
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)	Experimental-COG3533	Experimental Subsystems	
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)	Experimental-COG3533	Experimental Subsystems	
Arabinose operon regulatory protein	Experimental-COG3533	Experimental Subsystems	
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	Experimental-COG3533	Experimental Subsystems	
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	Experimental-COG3533	Experimental Subsystems	
L-arabinose transport system permease protein (TC 3.A.1.2.2)	Experimental-COG3533	Experimental Subsystems	
Protein AraJ precursor	Experimental-COG3533	Experimental Subsystems	
Putative glycosyl hydrolase of unknown function (DUF1680)	Experimental-COG3533	Experimental Subsystems	
Possible GPH family transporter (TC 2.A.2) for arabinosides	Experimental-COG3533	Experimental Subsystems	
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)	Experimental-COG3533	Experimental Subsystems	
L-arabinose-specific 1-epimerase (mutarotase)	Experimental-COG3533	Experimental Subsystems	
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase	Experimental-COG3533	Experimental Subsystems	
Transcriptional regulator of the arabinose operon in Shewanella, GntR family	Experimental-COG3533	Experimental Subsystems	
L-arabinolactonase (EC 3.1.1.15)	Experimental-COG3533	Experimental Subsystems	
L-arabonate dehydratase (EC 4.2.1.25)	Experimental-COG3533	Experimental Subsystems	
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Experimental-COG3533	Experimental Subsystems	
Putative oxidoreductase in arabinose utilization cluster	Experimental-COG3533	Experimental Subsystems	
L-arabinose 1-dehydrogenase (EC 1.1.1.46)	Experimental-COG3533	Experimental Subsystems	
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43)	Experimental-COG3533	Experimental Subsystems	
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster	Experimental-COG3533	Experimental Subsystems	
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein	Experimental-COG3533	Experimental Subsystems	
Predicted L-arabinose ABC transport system, permease protein 1	Experimental-COG3533	Experimental Subsystems	
Predicted L-arabinose ABC transport system, ATP-binding protein	Experimental-COG3533	Experimental Subsystems	
Predicted L-arabinose ABC transport system, permease protein 2	Experimental-COG3533	Experimental Subsystems	
Zn-dependent hydrolase, RNA-metabolising	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Peptide deformylase (EC 3.5.1.88)	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Cell division protein FtsK	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Ferric uptake regulation protein FUR	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Metallo-beta-lactamase family protein, RNA-specific	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Ribonuclease J1 (endonuclease and 5' exonuclease)	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Ribonuclease J2 (endoribonuclease in RNA processing)	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Protein of unknown function DUF1447	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Transcriptional regulator in cluster with Zn-dependent hydrolase	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
TsaD/Kae1/Qri7 family, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	At5g63420	Miscellaneous	Plant-Prokaryote comparative genomics
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
Diadenylate cyclase spyDAC	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphoglucosamine mutase (EC 5.4.2.10)	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
Arginase (EC 3.5.3.1)	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphomannomutase (EC 5.4.2.8)	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
FemD, factor involved in methicillin resistance	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
Butyrate kinase (EC 2.7.2.7)	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
phosphotransbutyrylase (EC 2.3.1.19)	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
NAD(FAD)-utilizing dehydrogenase, sll0175 homolog	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
uncharacterized secreted protein, YBBR Bacillus subtilis homolog	COG2509	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Aspartate aminotransferase (EC 2.6.1.1)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
L-asparaginase (EC 3.5.1.1)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Carbonic anhydrase (EC 4.2.1.1)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Glutaminase (EC 3.5.1.2)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Aspartate--ammonia ligase (EC 6.3.1.1)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Aspartate ammonia-lyase (EC 4.3.1.1)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
[Protein-PII] uridylyltransferase (EC 2.7.7.59)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Glutamine synthetase type I (EC 6.3.1.2)	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Cyanate transport protein CynX	Nitrogen_Metabolism_in_Aspergillus_nidulans	Clustering-based subsystems	Nitrogen Metabolism
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Aspartate/tyrosine/aromatic aminotransferase	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
D-alanine aminotransferase (EC 2.6.1.21)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Pyridoxal phosphate-dependent aminotransferase	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Aromatic-amino-acid aminotransferase (EC 2.6.1.57)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Ornithine aminotransferase (EC 2.6.1.13)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Diaminobutyrate-pyruvate aminotransferase (EC 2.6.1.46)	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Aminotransferase	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
Serine-pyruvate aminotransferase	Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress	Experimental Subsystems	
COG2078: Uncharacterized ACR	COG2078	Miscellaneous	Plant-Prokaryote comparative genomics
COG1355, Predicted dioxygenase	COG2078	Miscellaneous	Plant-Prokaryote comparative genomics
COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like	COG2078	Miscellaneous	Plant-Prokaryote comparative genomics
Catalytic LigB subunit of aromatic ring-opening dioxygenase	COG2078	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin aldolase (EC 4.1.2.25)	DMT_transporter	Miscellaneous	Plant-Prokaryote comparative genomics
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	DMT_transporter	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydropteroate synthase (EC 2.5.1.15)	DMT_transporter	Miscellaneous	Plant-Prokaryote comparative genomics
Permease of the drug/metabolite transporter (DMT) superfamily	DMT_transporter	Miscellaneous	Plant-Prokaryote comparative genomics
FolM Alternative dihydrofolate reductase 1	DMT_transporter	Miscellaneous	Plant-Prokaryote comparative genomics
UDP-glucose:tetrahydrobiopterin glucosyltransferase [EC:2.4.1.-]	DMT_transporter	Miscellaneous	Plant-Prokaryote comparative genomics
Nucleoside-diphosphate-sugar epimerases	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
CDP-6-deoxy-delta-3,4-glucoseen reductase-like	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130)	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also]	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-)	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
Glycosyltransferase	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
Undecaprenyl-diphosphatase (EC 3.6.1.27)	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
Murein endopeptidase	COG0451	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Fumarylacetoacetate hydrolase family protein	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Sepiapterin reductase (EC 1.1.1.153)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
FIG110192: hypothetical protein	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG1565: Uncharacterized conserved protein	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
FolM Alternative dihydrofolate reductase 1	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Maleylacetoacetate isomerase (EC 5.2.1.2)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aromatic-amino-acid aminotransferase (EC 2.6.1.57)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Fumarylacetoacetase (EC 3.7.1.2)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate epimerase	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Pterin-4-alpha-carbinolamine dehydratase-like	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Nitric oxide synthase oxygenase (EC 1.-.-.-)	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Related to Dihydropteroate synthase	Pterin_metabolism_3	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Queuosine biosynthesis QueD, PTPS-I	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin aldolase (EC 4.1.2.25)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
FIG110192: hypothetical protein	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Pterin-binding family	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Glutathione S-transferase (EC 2.5.1.18)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
FolM Alternative dihydrofolate reductase 1	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Maleylacetoacetate isomerase (EC 5.2.1.2)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 2	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin triphosphate epimerase	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Fumarylacetoacetase (EC 3.7.1.2)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Chorismate--pyruvate lyase (EC 4.1.3.40)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Pterin-4-alpha-carbinolamine dehydratase-like	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Nitric oxide synthase oxygenase (EC 1.-.-.-)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Folate biosynthesis, PTPS-III	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57)	COG3146_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin aldolase (EC 4.1.2.25)	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
FolM Alternative dihydrofolate reductase 1	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
Queuosine biosynthesis QueD, PTPS-I	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 1	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
COG1496: Uncharacterized conserved protein	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
COG1565: Uncharacterized conserved protein	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin triphosphate epimerase	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 2	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
Folate biosynthesis, PTPS-III	COG1565	Miscellaneous	Plant-Prokaryote comparative genomics
D-cysteine desulfhydrase (EC 4.4.1.15)	Experimental-COG2515	Miscellaneous	Plant-Prokaryote comparative genomics
Cystine ABC transporter, periplasmic cystine-binding protein FliY	Experimental-COG2515	Miscellaneous	Plant-Prokaryote comparative genomics
pyridoxal phosphate-dependent deaminase, putative	Experimental-COG2515	Miscellaneous	Plant-Prokaryote comparative genomics
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	Experimental-COG2515	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartate racemase (EC 5.1.1.13)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Diaminopimelate epimerase (EC 5.1.1.7)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues]	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Proline racemase (EC 5.1.1.4)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Glutamate racemase (EC 5.1.1.3)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
4-hydroxyproline epimerase (EC 5.1.1.8)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Ornithine racemase (EC 5.1.1.12)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Alanine racemase, catabolic (EC 5.1.1.1)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Alanine racemase, biosynthetic (EC 5.1.1.1)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Lysine racemase (EC 5.1.1.5)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Arginine racemase (EC 5.1.1.9)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Hypothetical protein BA2833 (in 4-hydroxyproline catabolic gene cluster)	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Amino acid racemase RacX	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Cryptic alanine racemase	EC_5.1.1.-_Racemases_and_epimerases_acting_on_amino_acids_and_derivatives	Experimental Subsystems	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
FIG000605: protein co-occurring with transport systems (COG1739)	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
ComF operon protein A, DNA transporter ATPase	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Sensor protein DegS	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
FIG005590: DegV family protein	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Transcriptional regulator DegU, LuxR family	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
FIG009148: Acetyltransferase, GNAT family	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
HemK family modification methylase PA2179	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
Choline monooxygenase-like protein with aromatic-ring-hydroxylating dioxygenase domain	At4g38090	Miscellaneous	Plant-Prokaryote comparative genomics
2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain	At5g38900	Miscellaneous	Plant-Prokaryote comparative genomics
MFS family multidrug efflux protein, similarity to bicyclomycin resistance protein Bcr	At5g38900	Miscellaneous	Plant-Prokaryote comparative genomics
MFS family multidrug efflux protein in Burkholderiaceae, unknown substrate	At5g38900	Miscellaneous	Plant-Prokaryote comparative genomics
Putative sodium:solute symporter, similarity with yeast urea transporter DUR3	At5g38900	Miscellaneous	Plant-Prokaryote comparative genomics
ATP-energized glutathione S-conjugate pump, putative	At5g38900	Miscellaneous	Plant-Prokaryote comparative genomics
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Benzoate_catabolism	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Benzoate 1,2-dioxygenase (EC 1.14.12.10)	Benzoate_catabolism	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)	Benzoate_catabolism	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Catechol 1,2-dioxygenase (EC 1.13.11.1)	Benzoate_catabolism	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Muconate cycloisomerase (EC 5.5.1.1)	Benzoate_catabolism	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Muconolactone isomerase (EC 5.3.3.4)	Benzoate_catabolism	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
3-Oxoadipate enol-lactonase (EC 3.1.1.24)	Benzoate_catabolism	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Ribonuclease P protein component (EC 3.1.26.5)	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Inner membrane protein translocase component YidC, long form	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Mercuric ion reductase (EC 1.16.1.1)	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical membrane protein Rv2120c	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Mercuric transport protein, MerT	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Uncharacterized protein DUF547	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
COG0398: uncharacterized membrane protein	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Possible sterol desaturase	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
ABC transporter, permease protein YnjC	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
ABC transporter, periplasmic substrate-binding protein YnjB	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
DedA family protein, putative	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Putative phosphatidylglycerophosphate synthase	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
ABC transporter, ATP-binding protein YnjD	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Sensor histidine kinase in cluster with mercury reductase	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Putative thiosulfate sulfurtransferase ynjE (EC 2.8.1.1)	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
DedA family inner membrane protein YdjX	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein YdjY	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein YnjA	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Mercuric transport protein, MerC	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Uncharacterized protein DUF1284, possibly iron-sulphur binding	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese-like domain/cysteine-rich domain	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
SVP26 protein associated with early Golgi proteins (SNARE associated domain)	COG0398	Miscellaneous	Plant-Prokaryote comparative genomics
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG005069: Hypothetical protein	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
COG2907: Amine oxidase, flavin-containing	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Hypothetical protein COG3496	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG002994: Putative transcriptional regulator	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG002577: Putative lipoprotein precursor	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG026291: Hypothetical periplasmic protein	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG024285: Hypothetical protein	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Transcriptional regulator, MerR family, associated with photolyase	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acid desaturase (EC 1.14.19.1)	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG097052: Sugar transporter	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
omega-3 polyunsaturated fatty acid synthase module PfaB/C	Putative_oxidase_COG2907	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 1	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
COG2907: Amine oxidase, flavin-containing	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein COG3496	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
FIG005069: Hypothetical protein	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Cyclopropane-fatty-acyl-phospholipid synthase 1, CmaA1 (EC 2.1.1.79)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Cyclopropane-fatty-acyl-phospholipid synthase 2, CmaA2 (EC 2.1.1.79)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Phytoene synthase (EC 2.5.1.32)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
FIG143828: Hypothetical protein YbgA	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
COG1683: Uncharacterized conserved protein	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
FIG002994: Putative transcriptional regulator	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Cryptochrome	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Transcriptional regulator, MerR family, associated with photolyase	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
FIG024285: Hypothetical protein	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
FIG026291: Hypothetical periplasmic protein	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
FIG002577: Putative lipoprotein precursor	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Deoxyribodipyrimidine photolyase, type II (EC 4.1.99.3)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Squalene synthase (EC 2.5.1.21)	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
COG3380: Amine oxidase, flavin-containing	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Renalase, degrades catecholamines such as dopamine, norepinephrine, epinephrine	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
Photolyase/blue-light receptor	COG3380_COG2907	Miscellaneous	Plant-Prokaryote comparative genomics
conserved protein with predicted RNA binding PUA domain	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
LSU ribosomal protein L37e	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Thioredoxin	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Translation initiation factor SUI1-related protein	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Putative snRNP Sm-like protein	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Small nuclear ribonucleoprotein F	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Putative snRNP Sm-like protein, Archaeal	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
U6 snRNA-associated Sm-like protein LSm6	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Similarity with yeast transcription factor IIIC Tau subunit that binds B-block elements of class III promoters	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Translation machinery-associated protein 64, YDR117C homolog	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
syntenic homolog of Saccharomyces cerevisiae YJR014W	COG2016	Miscellaneous	Plant-Prokaryote comparative genomics
Large exoproteins involved in heme utilization or adhesion	CBSS-316057.3.peg.3521	Clustering-based subsystems	
Thiol peroxidase, Bcp-type (EC 1.11.1.15)	CBSS-316057.3.peg.3521	Clustering-based subsystems	
Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)	CBSS-316057.3.peg.3521	Clustering-based subsystems	
Putative haemolysin/cytolysin secreted via TPS pathway	Two_partner_secretion_pathway_(TPS)	Protein Metabolism	Secretion
Channel-forming transporter/cytolysins activator of TpsB family	Two_partner_secretion_pathway_(TPS)	Protein Metabolism	Secretion
Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family	Two_partner_secretion_pathway_(TPS)	Protein Metabolism	Secretion
Fimbrial adhesin	Two_partner_secretion_pathway_(TPS)	Protein Metabolism	Secretion
Rhodanese domain protein UPF0176, Firmicutes subgroup	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Glutathione S-transferase domain protein	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein, Enterobacterial subgroup, YceA homolog	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1)	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese-related sulfurtransferase	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Actinobacterial subgroup	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Rickettsiales subgroup	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Betaproteobacterial subgroup	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Legionella subgroup	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
FIG015049: hypothetical protein	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
FIG015257: hypothetical protein	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Glutathione S-transferase domain protein (class beta)	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
Probable protein tyrosine phosphatase of the Cdc25-like phosphatase family	Single-Rhodanese-domain_proteins	Miscellaneous	Plant-Prokaryote comparative genomics
L-sorbose 1-phosphate reductase (EC 1.1.1.-)	Experimental-yggC	Miscellaneous	Plant-Prokaryote comparative genomics
PTS system, mannitol-specific IIB component (EC 2.7.1.69)	Experimental-yggC	Miscellaneous	Plant-Prokaryote comparative genomics
Uridine kinase family protein YggC homolog	Experimental-yggC	Miscellaneous	Plant-Prokaryote comparative genomics
Putative oxidoreductase linked to yggC	Experimental-yggC	Miscellaneous	Plant-Prokaryote comparative genomics
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	Experimental-yggC	Miscellaneous	Plant-Prokaryote comparative genomics
Fructokinase (EC 2.7.1.4)	At1g06020	Experimental Subsystems	
Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)	At1g06020	Experimental Subsystems	
Sucrose operon repressor ScrR, LacI family	At1g06020	Experimental Subsystems	
Multiple sugar ABC transporter, membrane-spanning permease protein MsmF	At1g06020	Experimental Subsystems	
D-mannose isomerase (EC 5.3.1.7)	At1g06020	Experimental Subsystems	
Predicted mannose transporter, GGP family	At1g06020	Experimental Subsystems	
Cell division initiation protein DivIVA	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
Cell division protein FtsZ (EC 3.4.24.-)	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
Cell division protein FtsA	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
FIG001583: hypothetical protein, contains S4-like RNA binding domain	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
Cell division protein FtsQ	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
FIG018583: protein of unknown function	COG2302	Miscellaneous	Plant-Prokaryote comparative genomics
Uncharacterized protein, similar to the N-terminal domain of Lon protease	COG3760	Miscellaneous	Plant-Prokaryote comparative genomics
tRNA-Gly-GCC	COG3760	Miscellaneous	Plant-Prokaryote comparative genomics
tRNA-Gly	COG3760	Miscellaneous	Plant-Prokaryote comparative genomics
COG3118: Thioredoxin domain-containing protein EC-YbbN	COG3760	Miscellaneous	Plant-Prokaryote comparative genomics
FIG042921: similarity to aminoacyl-tRNA editing enzymes YbaK, ProX	COG3760	Miscellaneous	Plant-Prokaryote comparative genomics
UPF0434 protein YcaR	COG3760	Miscellaneous	Plant-Prokaryote comparative genomics
Histidine ammonia-lyase (EC 4.3.1.3)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Urocanate hydratase (EC 4.2.1.49)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Imidazolonepropionase (EC 3.5.2.7)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Formiminoglutamic iminohydrolase (EC 3.5.3.13)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Formiminoglutamase (EC 3.5.3.8)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Serine hydroxymethyltransferase (EC 2.1.2.1)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate formiminotransferase (EC 2.1.2.5)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
N-formylglutamate deformylase (EC 3.5.1.68)	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
N-formylglutamate deformylase (EC 3.5.1.68) [alternative form]	Experimental_-_Histidine_Degradation	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphatidylglycerophosphatase A (EC 3.1.3.27)	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA type S	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Lipoate synthase	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
UPF0125 protein yfjF	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
tmRNA-binding protein SmpB	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Transfer-messenger RNA (tmRNA) involved in trans-translation	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
FIG006442: Integral membrane protein	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Heat-inducible transcription repressor HrcA	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Competence/damage-inducible protein CinA	At4g17650_(YfjG)	Miscellaneous	Plant-Prokaryote comparative genomics
Serine hydroxymethyltransferase (EC 2.1.2.1)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate 5-kinase (EC 2.7.2.11)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Acetylornithine aminotransferase (EC 2.6.1.11)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartokinase (EC 2.7.2.4)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Homoserine dehydrogenase (EC 1.1.1.3)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartate aminotransferase (EC 2.6.1.1)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted transcriptional regulator of pyridoxine metabolism	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Ornithine aminotransferase (EC 2.6.1.13)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Homoserine O-acetyltransferase (EC 2.3.1.31)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Valine--pyruvate aminotransferase (EC 2.6.1.66)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Pyridoxal kinase (EC 2.7.1.35)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Ornithine cyclodeaminase (EC 4.3.1.12)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Transcriptional regulator, GntR family / Aspartate aminotransferase (EC 2.6.1.1)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Proline racemase (EC 5.1.1.4)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.-); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
YGGT family protein	PROSC	Miscellaneous	Plant-Prokaryote comparative genomics
tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	YggW	Miscellaneous	Plant-Prokaryote comparative genomics
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	YggW	Miscellaneous	Plant-Prokaryote comparative genomics
A/G-specific adenine glycosylase (EC 3.2.2.-)	YggW	Miscellaneous	Plant-Prokaryote comparative genomics
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	YggW	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate 5-kinase (EC 2.7.2.11)	YggW	Miscellaneous	Plant-Prokaryote comparative genomics
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	YggW	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	YggW	Miscellaneous	Plant-Prokaryote comparative genomics
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
FIG002344: Hydrolase (HAD superfamily)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
FIG006542: Phosphoesterase	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Methionine aminopeptidase (EC 3.4.11.18)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
N-terminal domain of CinA protein, COG1058	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA type S	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
RecA protein	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
DNA mismatch repair protein MutL	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Thiamine-monophosphate kinase (EC 2.7.4.16)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
2'-5' RNA ligase	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
glutamyl-Q-tRNA synthetase	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA type E	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphatidylglycerophosphatase A (EC 3.1.3.27)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Sugar/maltose fermentation stimulation protein homolog	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted ATP-dependent endonuclease of the OLD family, YbjD subgroup	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
C4-type zinc finger protein, DksA/TraR family	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA paralog, YdeJ	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	SfsA-related	Miscellaneous	Plant-Prokaryote comparative genomics
FIG002344: Hydrolase (HAD superfamily)	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
FIG006542: Phosphoesterase	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
N-terminal domain of CinA protein, COG1058	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA type S	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
RecA protein	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
2'-5' RNA ligase	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
Sugar/maltose fermentation stimulation protein homolog	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphatidylglycerophosphatase A (EC 3.1.3.27)	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
Poly(A) polymerase (EC 2.7.7.19)	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48)	ligT	Miscellaneous	Plant-Prokaryote comparative genomics
Mandelate racemase (EC 5.1.2.2)	EC_5.1.2.-_Racemaces_and_epimerases_acting_on_hydroxy_acids_and_derivatives	Miscellaneous	
(S)-mandelate dehydrogenase (EC 1.1.99.31)	EC_5.1.2.-_Racemaces_and_epimerases_acting_on_hydroxy_acids_and_derivatives	Miscellaneous	
KEOPS complex component Pcc1	KEOPS_complex	RNA Metabolism	RNA processing and modification
KEOPS complex component CGI121	KEOPS_complex	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	KEOPS_complex	RNA Metabolism	RNA processing and modification
p53-regulating protein kinase (human PRPK/yeast YGR262c)	KEOPS_complex	RNA Metabolism	RNA processing and modification
small nuclear ribonucleoprotein homolog (Sm-like)	KEOPS_complex	RNA Metabolism	RNA processing and modification
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Cyclopropane-fatty-acyl-phospholipid synthase 2, CmaA2 (EC 2.1.1.79)	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Methoxy mycolic acid synthase MmaA1	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Methoxy mycolic acid synthase MmaA2 (EC 2.1.1.79)	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Methoxy mycolic acid synthase MmaA4	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Possible mycolic acid synthesis protein UmaA1	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Cyclopropane-fatty-acyl-phospholipid synthase PcaA (EC 2.1.1.79)	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Cyclopropane-fatty-acyl-phospholipid synthase 1, CmaA1 (EC 2.1.1.79)	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Methoxy mycolic acid synthase MmaA3 (EC 2.1.1.79)	Mycolic_acid_synthesis_2	Cell Wall and Capsule	Cell wall of Mycobacteria
Aspartate 1-decarboxylase (EC 4.1.1.11)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate--beta-alanine ligase (EC 6.3.2.1)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase (EC 2.7.1.24)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Ketol-acid reductoisomerase (EC 1.1.1.86)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
2-dehydropantoate 2-reductase (EC 1.1.1.169)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase (EC 2.7.1.33)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Substrate-specific component PanT of predicted pantothenate ECF transporter	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase, type II eukaryotic (EC 2.7.7.3)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate kinase, archaeal (EC 2.7.1.-)	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenate synthetase, archaeal	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
COG5495	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
DUF2520	CLO_DUF2520	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Anthranilate synthase, aminase component (EC 4.1.3.27)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Tryptophan synthase alpha chain (EC 4.2.1.20)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Tryptophan synthase beta chain (EC 4.2.1.20)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Aminodeoxychorismate lyase (EC 4.1.3.38)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Tryptophan synthase beta chain like (EC 4.2.1.20)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_synthesis_Chlora_tempo	Experimental Subsystems	
Chorismate mutase I (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Prephenate dehydratase (EC 4.2.1.51)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Periplasmic chorismate mutase I precursor (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Transcriptional repressor protein TyrR	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Chorismate mutase II (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Prephenate dehydrogenase (EC 1.3.1.12)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Arogenate dehydrogenase (EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Aromatic amino acid aminotransferase gamma (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Chorismate mutase III (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Arogenate dehydratase (EC 4.2.1.91)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Isochorismate pyruvate-lyase	Phenylalanine_and_Tyrosine_Branches_from_Chorismate_(copy_tempo)	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	EC49-61	Clustering-based subsystems	
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)	EC49-61	Clustering-based subsystems	
ApaG protein	EC49-61	Clustering-based subsystems	
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	EC49-61	Clustering-based subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	EC49-61	Clustering-based subsystems	
Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)	EC49-61	Clustering-based subsystems	
Organic solvent tolerance protein precursor	EC49-61	Clustering-based subsystems	
DnaJ-like protein DjlA	EC49-61	Clustering-based subsystems	
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)	EC49-61	Clustering-based subsystems	
RNA polymerase associated protein RapA (EC 3.6.1.-)	EC49-61	Clustering-based subsystems	
DNA polymerase II (EC 2.7.7.7)	EC49-61	Clustering-based subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	ECSIG4-SIG7	Clustering-based subsystems	
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	ECSIG4-SIG7	Clustering-based subsystems	
Organic solvent tolerance protein precursor	ECSIG4-SIG7	Clustering-based subsystems	
Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)	ECSIG4-SIG7	Clustering-based subsystems	
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	Erythromycin_resistance	Virulence	Resistance to antibiotics and toxic compounds
rRNA adenine N-6-methyltransferase (EC 2.1.1.48)	Erythromycin_resistance	Virulence	Resistance to antibiotics and toxic compounds
Ribosomal-protein-S5p-alanine acetyltransferase	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
16S rRNA processing protein RimM	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribonuclease E (EC 3.1.26.12)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
LSU m3Psi1915 methyltransferase RlmH	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribosomal protein L11 methyltransferase (EC 2.1.1.-)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
LSU m5C1962 methyltransferase RlmI	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
RNA pseudouridylate synthase, group 1	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribosomal protein S6 glutaminyl transferase	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribosomal-protein-L7p-serine acetyltransferase	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Ribonuclease M5 (EC 3.1.26.8)	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Similar to ribosomal large subunit pseudouridine synthase D, CAC1266-type	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Similar to ribosomal large subunit pseudouridine synthase A	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Similar to ribosomal large subunit pseudouridine synthase D, TTE1780-type	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Similar to ribosomal large subunit pseudouridine synthase A, group 2	Ribosome_biogenesis_bacterial	Protein Metabolism	Protein biosynthesis
Formate dehydrogenase chain D (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
NAD-dependent formate dehydrogenase alpha subunit	Formate_hydrogenase	Respiration	
NAD-dependent formate dehydrogenase beta subunit	Formate_hydrogenase	Respiration	
NAD-dependent formate dehydrogenase delta subunit	Formate_hydrogenase	Respiration	
NAD-dependent formate dehydrogenase gamma subunit	Formate_hydrogenase	Respiration	
Putative formate dehydrogenase oxidoreductase protein	Formate_hydrogenase	Respiration	
Formate dehydrogenase N alpha subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate dehydrogenase N beta subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate dehydrogenase N gamma subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate dehydrogenase O alpha subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate dehydrogenase O beta subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate dehydrogenase O gamma subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate efflux transporter (TC 2.A.44 family)	Formate_hydrogenase	Respiration	
Formate hydrogenlyase regulatory protein HycA	Formate_hydrogenase	Respiration	
Formate hydrogenlyase subunit 2	Formate_hydrogenase	Respiration	
Formate hydrogenlyase subunit 3	Formate_hydrogenase	Respiration	
Formate hydrogenlyase subunit 4	Formate_hydrogenase	Respiration	
Formate hydrogenlyase subunit 5	Formate_hydrogenase	Respiration	
Formate hydrogenlyase subunit 6	Formate_hydrogenase	Respiration	
Formate hydrogenlyase subunit 7	Formate_hydrogenase	Respiration	
Formate hydrogenlyase transcriptional activator	Formate_hydrogenase	Respiration	
Pyruvate formate-lyase (EC 2.3.1.54)	Formate_hydrogenase	Respiration	
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Formate_hydrogenase	Respiration	
formate dehydrogenase formation protein FdhE	Formate_hydrogenase	Respiration	
Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	Formate_hydrogenase	Respiration	
Hydrogenase-4 component B	Formate_hydrogenase	Respiration	
Hydrogenase-4 component E	Formate_hydrogenase	Respiration	
Hydrogenase-4 component A	Formate_hydrogenase	Respiration	
Hydrogenase-4 component C	Formate_hydrogenase	Respiration	
Hydrogenase-4 component D	Formate_hydrogenase	Respiration	
Hydrogenase-4 component F	Formate_hydrogenase	Respiration	
Hydrogenase-4 component G	Formate_hydrogenase	Respiration	
Hydrogenase-4 component H	Formate_hydrogenase	Respiration	
Hydrogenase-4 component I	Formate_hydrogenase	Respiration	
Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate dehydrogenase related protein	Formate_hydrogenase	Respiration	
Hypothetical protein YrhD	Formate_hydrogenase	Respiration	
Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Putative formate dehydrogenase-specific chaperone	Formate_hydrogenase	Respiration	
tungsten-containing formate dehydrogenase alpha subunit	Formate_hydrogenase	Respiration	
tungsten-containing formate dehydrogenase beta subunit	Formate_hydrogenase	Respiration	
Putative formate dehydrogenase, cytochrome B subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Hydrogenase-4 transcriptional activator	Formate_hydrogenase	Respiration	
Formate transporter	Formate_hydrogenase	Respiration	
Formate hydrogenlyase hypothetical subunit	Formate_hydrogenase	Respiration	
hydrogenase, HycC subunit, putative	Formate_hydrogenase	Respiration	
hydrogenase, group 4, HycE subunit, putative	Formate_hydrogenase	Respiration	
hydrogenase, group 4, HycG subunit, putative	Formate_hydrogenase	Respiration	
Formate dehydrogenase O putative subunit	Formate_hydrogenase	Respiration	
Hypothetical protein probably related to Formate dehydrogenase function	Formate_hydrogenase	Respiration	
NAD-dependent formate dehydrogenase (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate dehydrogenase putative subunit (EC 1.2.1.2)	Formate_hydrogenase	Respiration	
Formate efflux transporter (TC 2.A.44 family)	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase regulatory protein HycA	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase subunit 2	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase subunit 3	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase subunit 4	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase subunit 5	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase subunit 6	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase subunit 7	Hydrogenase_4	Experimental Subsystems	
Formate hydrogenlyase maturation protein HycH	Hydrogenase_4	Experimental Subsystems	
Hydrogenase 3 maturation protease	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component A	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component B	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component C	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component D	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component E	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component F	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component G	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component H	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 component I	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 maturation protease	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 transcriptional activator	Hydrogenase_4	Experimental Subsystems	
Hydrogenase-4 maturation protease 2	Hydrogenase_4	Experimental Subsystems	
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	CLO_Dehydrogenases	Experimental Subsystems	
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	CLO_Dehydrogenases	Experimental Subsystems	
2-dehydropantoate 2-reductase (EC 1.1.1.169)	CLO_Dehydrogenases	Experimental Subsystems	
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	CLO_Dehydrogenases	Experimental Subsystems	
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	CLO_Dehydrogenases	Experimental Subsystems	
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	CLO_Dehydrogenases	Experimental Subsystems	
COG5495	CLO_Dehydrogenases	Experimental Subsystems	
BOX elements	BOX,_RUP_and_SPRITE_repeats_in_Streptococcus_pneumoniae	Regulation and Cell signaling	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Qandmetal	Experimental Subsystems	Clustering-based subsystems
Queuosine biosynthesis QueD, PTPS-I	Qandmetal	Experimental Subsystems	Clustering-based subsystems
Queuosine Biosynthesis QueE Radical SAM	Qandmetal	Experimental Subsystems	Clustering-based subsystems
Queuosine Biosynthesis QueC ATPase	Qandmetal	Experimental Subsystems	Clustering-based subsystems
NADPH dependent preQ0 reductase (EC 1.7.1.13)	Qandmetal	Experimental Subsystems	Clustering-based subsystems
tRNA-guanine transglycosylase (EC 2.4.2.29)	Qandmetal	Experimental Subsystems	Clustering-based subsystems
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Qandmetal	Experimental Subsystems	Clustering-based subsystems
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Qandmetal	Experimental Subsystems	Clustering-based subsystems
COG2047: Uncharacterized protein (ATP-grasp superfamily)	Qandmetal	Experimental Subsystems	Clustering-based subsystems
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	Qandmetal	Experimental Subsystems	Clustering-based subsystems
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) PUA domain	Qandmetal	Experimental Subsystems	Clustering-based subsystems
Archaeosine cluster gene X	Qandmetal	Experimental Subsystems	Clustering-based subsystems
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Quinone_disambuiguation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	Quinone_disambuiguation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 3	Quinone_disambuiguation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Gene SCO4494, often clustered with other genes in menaquinone via futalosine pathway	Quinone_disambuiguation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	Quinone_disambuiguation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	Quinone_disambuiguation	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
His-Xaa-Ser repeat protein	radical_SAM_maturase_His-Xaa-Ser_system	Clustering-based subsystems	
His-Xaa-Ser system radical SAM maturase HxsB	radical_SAM_maturase_His-Xaa-Ser_system	Clustering-based subsystems	
His-Xaa-Ser system radical SAM maturase HxsC	radical_SAM_maturase_His-Xaa-Ser_system	Clustering-based subsystems	
His-Xaa-Ser system protein HxsD	radical_SAM_maturase_His-Xaa-Ser_system	Clustering-based subsystems	
Multidrug resistance protein Mmr	Small_Multidrug_Resistance	Experimental Subsystems	
Protein of unknown function UPF0060	Small_Multidrug_Resistance	Experimental Subsystems	
Quaternary ammonium compound-resistance protein SugE	Small_Multidrug_Resistance	Experimental Subsystems	
Multidrug resistance protein EbrA	Small_Multidrug_Resistance	Experimental Subsystems	
Multidrug resistance protein EbrB	Small_Multidrug_Resistance	Experimental Subsystems	
Ethidium bromide-methyl viologen resistance protein EmrE	Small_Multidrug_Resistance	Experimental Subsystems	
Spermidine export protein MdtI	Small_Multidrug_Resistance	Experimental Subsystems	
Spermidine export protein MdtJ	Small_Multidrug_Resistance	Experimental Subsystems	
Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase	Small_Multidrug_Resistance	Experimental Subsystems	
Polymyxin resistance protein PmrM	Small_Multidrug_Resistance	Experimental Subsystems	
Broad-specificity multidrug efflux pump YkkC	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Broad-specificity multidrug efflux pump YkkD	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Spermidine export protein MdtI	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Spermidine export protein MdtJ	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Small multidrug resistance protein Bsu YvdR	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Small multidrug resistance protein Bsu YvdS	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
TetR family transcriptional regulator Bsu YvdT	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Multidrug resistance protein EbrA	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Multidrug resistance protein EbrB	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
TetR family transcriptional regulator BA4434	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Small multidrug resistance protein BA0832	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Small multidrug resistance protein BA0833	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
TetR family transcriptional regulator BA0834	Small_multidrug_resistance_strays	Virulence	Resistance to antibiotics and toxic compounds
Histidine ammonia-lyase (EC 4.3.1.3)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Urocanate hydratase (EC 4.2.1.49)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Imidazolonepropionase (EC 3.5.2.7)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Formiminoglutamase (EC 3.5.3.8)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Formiminoglutamic iminohydrolase (EC 3.5.3.13)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Hut operon positive regulatory protein	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Histidine transport protein (permease)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Glutamate formiminotransferase (EC 2.1.2.5)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
N-formylglutamate deformylase (EC 3.5.1.68)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Histidine utilization repressor	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
Conserved hypothetical protein (perhaps related to histidine degradation)	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
N-formylglutamate deformylase (EC 3.5.1.68) [alternative form]	Histidine_Degradation	Amino Acids and Derivatives	Histidine Metabolism
ABC transporter ATP-binding protein YydI	Bacillus_subtilis_yydFGHIJ_operon	Secondary Metabolism	
ABC-2 family transporter protein YydJ	Bacillus_subtilis_yydFGHIJ_operon	Secondary Metabolism	
Effector protein precursor peptide YydF	Bacillus_subtilis_yydFGHIJ_operon	Secondary Metabolism	
Modification enzyme, radical SAM domain protein YydG	Bacillus_subtilis_yydFGHIJ_operon	Secondary Metabolism	
Membrane-embedded metalloprotease YydH	Bacillus_subtilis_yydFGHIJ_operon	Secondary Metabolism	
Alpha-mannosidase (EC 3.2.1.24)	2-O-alpha-mannosyl-D-glycerate_utilization	Carbohydrates	Di- and oligosaccharides
Mannosyl-D-glycerate utilization repressor MngR	2-O-alpha-mannosyl-D-glycerate_utilization	Carbohydrates	Di- and oligosaccharides
PTS system, 2-O-alpha-mannosyl-D-glycerate-specific IIA component	2-O-alpha-mannosyl-D-glycerate_utilization	Carbohydrates	Di- and oligosaccharides
PTS system, 2-O-alpha-mannosyl-D-glycerate-specific IIB component	2-O-alpha-mannosyl-D-glycerate_utilization	Carbohydrates	Di- and oligosaccharides
PTS system, 2-O-alpha-mannosyl-D-glycerate-specific IIC component	2-O-alpha-mannosyl-D-glycerate_utilization	Carbohydrates	Di- and oligosaccharides
Mannose-6-phosphate isomerase (EC 5.3.1.8)	Gycosylglycerates	Stress Response	Osmotic stress
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)	Gycosylglycerates	Stress Response	Osmotic stress
Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266)	Gycosylglycerates	Stress Response	Osmotic stress
Mannosylglucosyl-3-phosphoglycerate synthase (EC 2.4.1.270)	Gycosylglycerates	Stress Response	Osmotic stress
Mannosylglucosyl-3-phosphoglycerate phosphatase	Gycosylglycerates	Stress Response	Osmotic stress
Glucosylglycerate synthase (EC 2.4.1.268)	Gycosylglycerates	Stress Response	Osmotic stress
Mannosylglucosylglycerate synthase	Gycosylglycerates	Stress Response	Osmotic stress
Phosphomannomutase (EC 5.4.2.8)	Gycosylglycerates	Stress Response	Osmotic stress
Glucose-6-phosphate isomerase, archaeal (EC 5.3.1.9)	Gycosylglycerates	Stress Response	Osmotic stress
Mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217)	Gycosylglycerates	Stress Response	Osmotic stress
Glucosyl-3-phosphoglycerate phosphatase (EC 3.1.3.85)	Gycosylglycerates	Stress Response	Osmotic stress
Mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70)	Gycosylglycerates	Stress Response	Osmotic stress
Mannosylglycerate synthase (EC 2.4.1.269)	Gycosylglycerates	Stress Response	Osmotic stress
Sulfatase modifying factor 1 precursor (C-alpha-formyglycine- generating enzyme 1)	Sulfatases_and_sulfatase_modifying_factor_1	Clustering-based subsystems	Sulfatases and sulfatase modifying factor 1 (and a hypothetical)
Choline-sulfatase (EC 3.1.6.6)	Sulfatases_and_sulfatase_modifying_factor_1	Clustering-based subsystems	Sulfatases and sulfatase modifying factor 1 (and a hypothetical)
Arylsulfatase (EC 3.1.6.1)	Sulfatases_and_sulfatase_modifying_factor_1	Clustering-based subsystems	Sulfatases and sulfatase modifying factor 1 (and a hypothetical)
FIG068086: hypothetical protein	Sulfatases_and_sulfatase_modifying_factor_1	Clustering-based subsystems	Sulfatases and sulfatase modifying factor 1 (and a hypothetical)
Mucin-desulfating sulfatase MdsA precursor (EC 3.1.6.14)	Sulfatases_and_sulfatase_modifying_factor_1	Clustering-based subsystems	Sulfatases and sulfatase modifying factor 1 (and a hypothetical)
N-acetylgalactosamine-6-sulfatase (EC 3.1.6.4)	Sulfatases_and_sulfatase_modifying_factor_1	Clustering-based subsystems	Sulfatases and sulfatase modifying factor 1 (and a hypothetical)
Sulfatase	Sulfatases_and_sulfatase_modifying_factor_1	Clustering-based subsystems	Sulfatases and sulfatase modifying factor 1 (and a hypothetical)
Trehalose operon transcriptional repressor	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, trehalose-specific IIB component (EC 2.7.1.69)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Maltose-6'-phosphate glucosidase (EC 3.2.1.122)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-phosphoglucomutase (EC 5.4.2.6)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Glucose/mannose:H+ symporter GlcP	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, glucose-specific IIA component	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, glucose-specific IIB component (EC 2.7.1.69)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, glucose-specific IIC component	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Trehalose 6-phosphate phosphorylase (EC 2.4.1.216)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Trehalase (EC 3.2.1.28)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Trehalose phosphorylase (EC 2.4.1.64)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, trehalose-specific IIA component (EC 2.7.1.69)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted trehalose permease, MFS family, FucP subfamily	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Cytoplasmic trehalase (EC 3.2.1.28)	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Trehalose synthase, nucleoside diphosphate glucose dependent	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted trehalose ABC transporter, permease component 1, Archaea-type	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted trehalose ABC transporter, permease component 2, Archaea-type	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Regulator of trehalose utilization TreR, ROK family	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Probable transcriptional regulator of trehalose utilization, LuxR family	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted trehalose permease, MFS family	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Putative cytoplasmic protein clustered with trehalase	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted trehalose ABC transporter, substrate-binding component, Archaea-type	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Transcriptional regulator of trehalose utilization, LacI family	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Trehalose-regulated TonB-dependent outer membrane receptor	Trehalose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
6-phospho-beta-glucosidase (EC 3.2.1.86)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucoside bgl operon antiterminator, BglG family	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, beta-glucoside-specific IIC component	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, beta-glucoside-specific IIA component	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucosidase (EC 3.2.1.21)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, cellobiose-specific IIC component (EC 2.7.1.69)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, cellobiose-specific IIA component (EC 2.7.1.69)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, cellobiose-specific IIB component (EC 2.7.1.69)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Transcriptional antiterminator of lichenan operon, BglG family	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Cellobiose phosphotransferase system YdjC-like protein	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Glucokinase, ROK family (EC 2.7.1.2)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Outer surface protein of unknown function, cellobiose operon	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, diacetylchitobiose-specific IIC component (EC 2.7.1.69)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, diacetylchitobiose-specific IIB component (EC 2.7.1.69)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
6-phospho-beta-glucosidase ascB (EC 3.2.1.86)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, arbutin-, cellobiose-, and salicin-specific IIBC component (EC 2.7.1.69)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
AscBF operon repressor	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Periplasmic beta-glucosidase (EC 3.2.1.21)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucoside ABC transport system, sugar-binding protein	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucoside ABC transport system, permease protein 1	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucoside ABC transport system, permease protein 2	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucoside ABC transport system, ATP-binding protein 1	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucoside ABC transport system, ATP-binding protein 2	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Cellobiose-responsive regulator of beta-glucosides utilization, ROK family	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Laminarinase (EC 3.2.1.39)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Methyl-accepting chemotaxis protein co-located with beta-glucan transporter system	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Cellobiose phosphorylase (EC 2.4.1.-)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted regulator of glucose and trehalose utilization, ROK family	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Extracellular endo-1,4-beta-glucanase (EC 3.2.1.4)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted cellobiose ABC transport system, sugar-binding protein	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted cellobiose ABC transport system, permease protein 1	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted cellobiose ABC transport system, permease protein 2	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted cellobiose ABC transport system, ATP-binding protein 1	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted regulator of cellobiose and glucan utilization, LacI family	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted dehydrogenase in CelR regulon, COG0673	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted aldo/keto reductase in CelR regulon, COG4989	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Beta-glucanase precursor (EC 3.2.1.73)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
PTS system, diacetylchitobiose-specific IIA component (EC 2.7.1.6	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted beta-glucoside-regulated ABC transport system, sugar binding component, COG1653	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted beta-glucoside-regulated ABC transport system, permease component 1, COG1175	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted beta-glucoside-regulated ABC transport system, permease component 2, COG0395	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted regulator Pmob_1925 of beta-glucosides utilization, ROK family	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted beta-glucosides ABC transporter, permease protein 1	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Predicted beta-glucosides ABC transporter, permease protein 2	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Glucose ABC transporter, substrate-binding component	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Glucose ABC transporter, permease component	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Glucose ABC transporter, ATP-binding component	Beta-Glucoside_Metabolism	Carbohydrates	Di- and oligosaccharides
Putative regulator of the mannose operon, ManO	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannose-6-phosphate isomerase (EC 5.3.1.8)	Mannose_Metabolism	Carbohydrates	Monosaccharides
PTS system, mannose-specific IIB component (EC 2.7.1.69)	Mannose_Metabolism	Carbohydrates	Monosaccharides
PTS system, mannose-specific IIA component	Mannose_Metabolism	Carbohydrates	Monosaccharides
PTS system, mannose-specific IIC component	Mannose_Metabolism	Carbohydrates	Monosaccharides
PTS system, mannose-specific IID component	Mannose_Metabolism	Carbohydrates	Monosaccharides
Activator of the mannose operon (transcriptional antiterminator), BglG family	Mannose_Metabolism	Carbohydrates	Monosaccharides
Phosphomannomutase (EC 5.4.2.8)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Endo-1,4-beta-mannosidase	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13 )	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Alpha-mannosidase (EC 3.2.1.24)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Beta-mannosidase (EC 3.2.1.25)	Mannose_Metabolism	Carbohydrates	Monosaccharides
GDP-mannose mannosyl hydrolase (EC 3.6.1.-)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannoside ABC transport system, sugar-binding protein	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannoside ABC transport system, ATP-binding protein 2	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted glycosylase TM1225	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted dehydrogenase in CelR regulon, COG0673	Mannose_Metabolism	Carbohydrates	Monosaccharides
Beta-mannan and fructose induced hypothetical ABC transporter, periplasmic oligopeptide-binding protein	Mannose_Metabolism	Carbohydrates	Monosaccharides
Beta-mannan and fructose induced hypothetical ABC transporter, permease protein 1	Mannose_Metabolism	Carbohydrates	Monosaccharides
Beta-mannan and fructose induced hypothetical ABC transporter, permease protein 2	Mannose_Metabolism	Carbohydrates	Monosaccharides
Beta-mannan and fructose induced hypothetical ABC transporter, ATP-binding protein 1	Mannose_Metabolism	Carbohydrates	Monosaccharides
Beta-mannan and fructose induced hypothetical ABC transporter, ATP-binding protein 2	Mannose_Metabolism	Carbohydrates	Monosaccharides
Endoglucanase (EC 3.2.1.4)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Endo-mannanase (EC 3.2.1.78)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted glycosylase, COG2152	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted regulator of alpha-mannoside utilization, LacI family	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted alpha-mannoside ABC transporter, substrate binding protein	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted alpha-mannoside ABC transporter, permease protein 1	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted alpha-mannoside ABC transporter, permease protein 2	Mannose_Metabolism	Carbohydrates	Monosaccharides
Beta-mannosidase Man2	Mannose_Metabolism	Carbohydrates	Monosaccharides
Alpha-1,2-mannosidase	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted mannose transporter, GGP family	Mannose_Metabolism	Carbohydrates	Monosaccharides
D-mannose isomerase (EC 5.3.1.7)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannose-6-phosphate isomerase, class I (EC 5.3.1.8)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Hexokinase (EC 2.7.1.1)	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannoside ABC transport system, ATP-binding protein 1	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannoside ABC transport system, permease protein 1	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannoside ABC transport system, permease protein 2	Mannose_Metabolism	Carbohydrates	Monosaccharides
Transcriptional regulator of mannoside utilization, LacI family	Mannose_Metabolism	Carbohydrates	Monosaccharides
Endo-alpha-mannosidase	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted sodium-dependent mannose transporter	Mannose_Metabolism	Carbohydrates	Monosaccharides
Predicted regulator of mannoside utilization, LacI family	Mannose_Metabolism	Carbohydrates	Monosaccharides
Transcriptional regulator of mannoside utilization, variant 2, LacI family	Mannose_Metabolism	Carbohydrates	Monosaccharides
Mannosides-regulated TonB-dependent outer membrane receptor	Mannose_Metabolism	Carbohydrates	Monosaccharides
N-acetyl glucosamine transporter, NagP	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Beta-hexosaminidase (EC 3.2.1.52)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Chitinase (EC 3.2.1.14)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Chitin binding protein	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylglucosamine related transporter, NagX	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Galactokinase (EC 2.7.1.6)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, glucose-specific IIA component	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Sucrose phosphorylase (EC 2.4.1.7)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted sucrose permease, MFS family, FucP subfamily	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Fructokinase (EC 2.7.1.4)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribulokinase (EC 2.7.1.16)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
L-arabinose isomerase (EC 5.3.1.4)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Phosphocarrier protein of PTS system	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Phosphogluconate dehydratase (EC 4.2.1.12)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glycerate kinase (EC 2.7.1.31)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Sugar diacid utilization regulator SdaR	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Phosphopentomutase (EC 5.4.2.7)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribokinase in cluster with nucleoside hydrolase (EC 2.7.1.15)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Maltodextrin glucosidase (EC 3.2.1.20)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Aldose 1-epimerase (EC 5.1.3.3)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
L-arabinolactonase (EC 3.1.1.15)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Neopullulanase (EC 3.2.1.135)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Carbohydrate kinase, PfkB family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glucokinase, ROK family (EC 2.7.1.2)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted maltose-specific TonB-dependent receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Arabinose-regulated TonB-dependent outer membrane receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
TonB-dependent receptor possibly related to N-acetylgalactosamine utilization	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of the arabinose operon in Shewanella, GntR family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of maltose utilization, LacI family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional repressor of aga operon	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted L-arabinose ABC transport system, ATP-binding protein	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Possible GPH family transporter (TC 2.A.2) for arabinosides	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
L-arabinose-specific 1-epimerase (mutarotase)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, glucose-specific IIB component (EC 2.7.1.69)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, glucose-specific IIC component	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-Acetyl-D-galactosamine permease, possible	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylgalactosamine-6-phosphate deacetylase, predicted alternative (EC 3.5.1.25)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Tagatose-6-phosphate kinase AgaZ (EC 2.7.1.144)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Hypothetical secreted sugar oxidoreductase, Gfo/Idh/MocA family, GalNAc-related	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
L-arabonate dehydratase (EC 4.2.1.25)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted L-arabinose ABC transport system, permease protein 1	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted L-arabinose ABC transport system, permease protein 2	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribokinase (EC 2.7.1.15)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
D-glycerate transporter (predicted)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Alpha-amylase (EC 3.2.1.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted glucose transporter in maltodextrin utilization gene cluster	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted maltose transporter MalT	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Alpha-glucosidase (EC 3.2.1.20)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glucoamylase (EC 3.2.1.3)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted sucrose-specific TonB-dependent receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transketolase (EC 2.2.1.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transaldolase (EC 2.2.1.2)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Triosephosphate isomerase (EC 5.3.1.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Phosphoglycerate kinase (EC 2.7.2.3)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Enolase (EC 4.2.1.11)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Pyruvate kinase (EC 2.7.1.40)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Sucrose repressor, LacI family, Shewanella subfamily	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
UDP-glucose 4-epimerase (EC 5.1.3.2)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Thymidine phosphorylase (EC 2.4.2.4)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Purine nucleoside phosphorylase (EC 2.4.2.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
ROK family protein, in a cluster with chitinase	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Phosphoglucomutase (EC 5.4.2.2)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Hypothetical periplasmic glycoside hydrolase, family DUF1680	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of mannoside utilization, LacI family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Alpha-1,2-mannosidase	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted mannose transporter, GGP family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
D-mannose isomerase (EC 5.3.1.7)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
ABC transporter, sugar-binding protein of unknown specificity	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Cytoplasmic alpha-amylase (EC 3.2.1.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted b-glucoside-specific TonB-dependent outer membrane receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of b-glucosides utilization, LacI family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted b-glucoside transporter, GPH family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted glucose transporter in b-glucoside utilization gene cluster	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Cytoplasmic beta-glucosidase (EC 3.2.1.21)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Beta-glucanase precursor (EC 3.2.1.73)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Periplasmic beta-glucosidase (EC 3.2.1.21)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
poly(beta-D-mannuronate) lyase (EC 4.2.2.3)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Trehalase (EC 3.2.1.28)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted mannuronate transporter	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Multiple polyol-specific dehydrogenase (EC 1.1.1.-)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of trehalose utilization, LacI family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of mannitol utilization, DeoR family protein	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, unknown sugar IIA component (EC 2.7.1.69)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, unknown sugar IIB component (EC 2.7.1.69)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, unknown sugar IIC component (EC 2.7.1.69)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Pectin degradation protein KdgF	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Alginate lyase precursor (EC 4.2.2.3)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted alginate utilization operon transcriptional repressor AlgR	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted mannitol permease	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted trehalose permease, MFS family, FucP subfamily	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Trehalose-regulated TonB-dependent outer membrane receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Fructokinase in mannitol utilization gene cluster (EC 2.7.1.4)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, mannose-specific IIC component	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, mannose-specific IID component	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glycerol dehydrogenase (EC 1.1.1.6)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, mannose-specific IIA component	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
PTS system, mannose-specific IIB component (EC 2.7.1.69)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Beta-galactosidase (EC 3.2.1.23)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted sodium-dependent galactose transporter	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Alpha-1,6-glucosidases, pullulanase-type	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of mannoside utilization, variant 2, LacI family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Mannosides-regulated TonB-dependent outer membrane receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Endo-alpha-mannosidase	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Beta-mannosidase (EC 3.2.1.25)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted sodium-dependent mannose transporter	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribose operon repressor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Xylitol dehydrogenase (EC 1.1.1.9)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Xylulose kinase (EC 2.7.1.17)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator NanR	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
N-acetylneuraminate mutarotase	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Predicted sialic acid transporter	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of xylitol utilization, LacI family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Xylitol ABC transporter, ATP-binding component	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Xylitol ABC transporter, permease component	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Xylitol ABC transporter, periplasmic substrate-binding protein	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Sialidase (EC 3.2.1.18)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Sialic acid-regulated TonB-dependent outer membrane receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
carbohydrate binding protein	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Chitodextrinase precursor (EC 3.2.1.14)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Trehalose phosphorylase (EC 2.4.1.64)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Beta-phosphoglucomutase (EC 5.4.2.6)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Galactose operon repressor, GalR-LacI family of transcriptional regulators	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Maltogenic alpha-amylase (EC 3.2.1.133)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
paralog N-acetylglucosamine transporter, GGP family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
predicted N-acetylglucosamine kinase, ROK family (EC 2.7.1.59)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Transcriptional regulator of N-acetylglucosamine utilization, AraC family	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Polysaccharide deacetylase in N-acetylglucoamine utilization gene cluster	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Alpha-galactosidase (EC 3.2.1.22)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Gluconokinase (EC 2.7.1.12)	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Gluconate utilization system Gnt-I transcriptional repressor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Low-affinity gluconate/H+ symporter GntU	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Galactose-regulated TonB-dependent outer membrane receptor	Sugar_catabolome_in_Shewanella_species	Experimental Subsystems	
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	MDJ_Experimental_AgaR	Experimental Subsystems	
N-acetylgalactosamine-6-phosphate deacetylase	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIC component	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IID component	MDJ_Experimental_AgaR	Experimental Subsystems	
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	MDJ_Experimental_AgaR	Experimental Subsystems	
Tagatose-6-phosphate kinase AgaZ (EC 2.7.1.144)	MDJ_Experimental_AgaR	Experimental Subsystems	
TonB-dependent receptor	MDJ_Experimental_AgaR	Experimental Subsystems	
Transcriptional repressor of aga operon	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, galactosamine-specific IIC component	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, galactosamine-specific IID component	MDJ_Experimental_AgaR	Experimental Subsystems	
FIG00919894: hypothetical protein	MDJ_Experimental_AgaR	Experimental Subsystems	
GALNS arylsulfatase regulator (Fe-S oxidoreductase)	MDJ_Experimental_AgaR	Experimental Subsystems	
N-acetylgalactosamine-6-sulfatase (EC 3.1.6.4)	MDJ_Experimental_AgaR	Experimental Subsystems	
N-Acetyl-D-galactosamine permease, possible	MDJ_Experimental_AgaR	Experimental Subsystems	
N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	MDJ_Experimental_AgaR	Experimental Subsystems	
N-acetylgalactosamine-6-phosphate deacetylase, predicted alternative (EC 3.5.1.25)	MDJ_Experimental_AgaR	Experimental Subsystems	
TonB-dependent receptor possibly related to N-acetylgalactosamine utilization	MDJ_Experimental_AgaR	Experimental Subsystems	
Galactosamine-6-phosphate isomerase (galactosamine-6-phosphate deaminase) (EC 5.3.1.-)	MDJ_Experimental_AgaR	Experimental Subsystems	
FIG01112583: hypothetical protein	MDJ_Experimental_AgaR	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, N-acetylgalactosamine-specific IIC component	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, N-acetylgalactosamine-specific IID component	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, galactosamine-specific IIC component	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, galactosamine-specific IID component	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Transcriptional repressor of aga operon	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
N-acetylgalactosamine-6-phosphate deacetylase	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Galactosamine-6-phosphate isomerase (galactosamine-6-phosphate deaminase) (EC 5.3.1.-)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Tagatose-6-phosphate kinase AgaZ (EC 2.7.1.144)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
N-acetylgalactosamine-6-sulfatase (EC 3.1.6.4)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
GALNS arylsulfatase regulator (Fe-S oxidoreductase)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
6-phosphofructokinase (EC 2.7.1.11)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Beta-phosphoglucomutase (EC 5.4.2.6)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Beta-hexosaminidase (EC 3.2.1.52)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Beta-galactosidase 3	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IID component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IIA component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IIC component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Chondroitinase (chondroitin lyase)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted N-acetylgalactosamine kinase, COG2971 (EC 2.7.1.157)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted cytoplasmic N-Acetyl-D-galactosamine oligosaccharide hydrolase	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
TonB-dependent receptor possibly related to N-acetylgalactosamine utilization	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
N-acetylgalactosamine-6-phosphate deacetylase, predicted alternative (EC 3.5.1.25)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
N-Acetyl-D-galactosamine permease, possible	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted N-Acetyl-D-galactosamine oligosaccharide permease	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
OmpC family porin possibly related to N-acetylgalactosamine utilization	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted exported glycosyl hydrolase family 31 protein	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
TonB-dependent receptor possibly related to N-acetylgalactosamine utilization, alternative	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted exported alpha-N-acetylgalactosaminidase (EC 3.2.1.49)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Cytoplasmic beta-galactosidase (EC 3.2.1.23)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine disaccharide-specific IIB component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine disaccharide-specific IIC component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine disaccharide-specific IID component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine disaccharide-specific IIA component (EC 2.7.1.69)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Tagatose-1,6-bisphosphate aldolase, alternative (EC 4.1.2.-)	N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase (EC 2.4.99.-)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Phosphoglucosamine mutase (EC 5.4.2.10)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Beta-1,4-N-acetylgalactosaminyltransferase (EC 2.4.1.-)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylneuraminate synthase (EC 2.5.1.56)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylmannosamine kinase (EC 2.7.1.60)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylneuraminate lyase (EC 4.1.3.3)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylneuraminic acid outer membrane channel protein NanC	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, N-acetylglucosamine-specific IIA component	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, N-acetylglucosamine-specific IIC component	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, mannose-specific IIA component	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, mannose-specific IIB component (EC 2.7.1.69)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, mannose-specific IIC component	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, mannose-specific IID component	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Putative sugar isomerase involved in processing of exogenous sialic acid	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Sialic acid transporter (permease) NanT	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Transcriptional regulator NanR	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Sialic acid utilization regulator, RpiR family	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acylglucosamine 2-epimerase (EC 5.1.3.8)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Predicted sialic acid transporter	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
ABC transporter, predicted N-acetylneuraminate transport system permease protein 1	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
ABC transporter, predicted N-acetylneuraminate transport system permease protein 2	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
ABC transporter, predicted N-acetylneuraminate-binding protein	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Sialidase (EC 3.2.1.18)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, N-acetylmuramic acid-specific IIB component (EC 2.7.1.69)	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
PTS system, N-acetylmuramic acid-specific IIC component	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Sialic acid biosynthesis protein NeuD, O-acetyltransferase	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-acetylneuraminate mutarotase	Sialic_Acid_Metabolism	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Transaldolase (EC 2.2.1.2)	Fructose_utilization	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIA component	Fructose_utilization	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIB component (EC 2.7.1.69)	Fructose_utilization	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIC component	Fructose_utilization	Carbohydrates	Monosaccharides
1-phosphofructokinase (EC 2.7.1.56)	Fructose_utilization	Carbohydrates	Monosaccharides
Fructokinase (EC 2.7.1.4)	Fructose_utilization	Carbohydrates	Monosaccharides
Transcriptional repressor of the fructose operon, DeoR family	Fructose_utilization	Carbohydrates	Monosaccharides
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Fructose_utilization	Carbohydrates	Monosaccharides
Fructose-specific phosphocarrier protein HPr	Fructose_utilization	Carbohydrates	Monosaccharides
Fructose repressor FruR, LacI family	Fructose_utilization	Carbohydrates	Monosaccharides
Phosphocarrier protein of PTS system	Fructose_utilization	Carbohydrates	Monosaccharides
Fructose ABC transporter, ATP-binding component FrcA	Fructose_utilization	Carbohydrates	Monosaccharides
Fructose ABC transporter, substrate-binding component FrcB	Fructose_utilization	Carbohydrates	Monosaccharides
Fructose ABC transporter, permease component FrcC	Fructose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator FrcR for fructose utilization, ROK family	Fructose_utilization	Carbohydrates	Monosaccharides
Predicted regulator of fructose utilization, DeoR family	Fructose_utilization	Carbohydrates	Monosaccharides
Beta-fructosidase BfrA	Fructose_utilization	Carbohydrates	Monosaccharides
Phosphocarrier protein of PTS system	PTS_uptake_system_scratch_2	Experimental Subsystems	
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucose-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucose-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucose-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, fructose-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, fructose-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, fructose-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, beta-glucoside-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, beta-glucoside-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
Putative phosphotransferase enzyme IIA component YpqE	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, mannose-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, mannose-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, mannose-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, mannose-specific IID component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylmuramic acid-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylmuramic acid-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucitol/sorbitol-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucitol/sorbitol-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IID component	PTS_uptake_system_scratch_2	Experimental Subsystems	
Phosphocarrier protein, nitrogen regulation associated	PTS_uptake_system_scratch_2	Experimental Subsystems	
Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system nitrogen-specific IIA component, PtsN	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, fructose-like IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, fructose-like IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, fructose-like IIB component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, galactosamine-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, galactosamine-specific IID component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, sorbose-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, sorbose-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, sorbose-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, sorbose-specific IID component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, 2-O-alpha-mannosyl-D-glycerate-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, 2-O-alpha-mannosyl-D-glycerate-specific IIB component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, 2-O-alpha-mannosyl-D-glycerate-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucosamine-specific IIA component	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucosamine-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch_2	Experimental Subsystems	
PTS system, glucosamine-specific IIC component	PTS_uptake_system_scratch_2	Experimental Subsystems	
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	Tagatose_utilization	Carbohydrates	Monosaccharides
PTS system, tagatose-specific IIB component (EC 2.7.1.69)	Tagatose_utilization	Carbohydrates	Monosaccharides
PTS system, tagatose-specific IIC component	Tagatose_utilization	Carbohydrates	Monosaccharides
Tagatose-1-phosphate kinase TagK	Tagatose_utilization	Carbohydrates	Monosaccharides
PTS system, tagatose-specific phosphocarrier protein	Tagatose_utilization	Carbohydrates	Monosaccharides
PTS system, tagatose-specific IIA component	Tagatose_utilization	Carbohydrates	Monosaccharides
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
PTS system, N-acetylglucosamine-specific IIA component	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
PTS system, N-acetylglucosamine-specific IIC component	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Chitinase (EC 3.2.1.14)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-acetylglucosamine-regulated outer membrane porin	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
PTS system, N,N'-diacetylchitobiose-specific IIB component (EC 2.7.1.69)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
PTS system, N,N'-diacetylchitobiose-specific IIC component	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
PTS system, N,N'-diacetylchitobiose-specific IIA component	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N,N'-diacetylchitobiose-specific regulator ChbR, AraC family	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-Acetyl-D-glucosamine ABC transport system, permease protein 2	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-Acetyl-D-glucosamine ABC transport system ATP-binding protein	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
hypothetical oxidoreductase related to N-acetylglucosamine utilization	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Beta-hexosaminidase (EC 3.2.1.52)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Chitodextrinase precursor (EC 3.2.1.14)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Chitin binding protein	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-acetyl glucosamine transporter, NagP	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Alpha-N-acetylglucosaminidase (EC 3.2.1.50)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-acetylglucosamine related transporter, NagX	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted N-acetyl-glucosamine kinase 2, ROK family (EC 2.7.1.59)	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Regulator of chitobiose utilization ChiR, ROK family	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted chitobiose ABC transport system, sugar-binding protein	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted chitobiose ABC transport system, permease protein 1	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted chitobiose ABC transport system II, permease protein 2	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
N-Acetyl-D-glucosamine permease 2, possible	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted chitobiose ABC transport system II, sugar-binding protein	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted chitobiose ABC transport system II, permease protein 1	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted chitobiose ABC transport system, permease protein 2	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	Aminosugars
tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	Mycobacterial_MmpL3_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00820733: hypothetical protein, Rv0207c	Mycobacterial_MmpL3_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL3	Mycobacterial_MmpL3_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01121868: Possible membrane protein, Rv0205	Mycobacterial_MmpL3_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01121868: Possible membrane protein, Rv0204c	Mycobacterial_MmpL3_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Cyclopropane-fatty-acyl-phospholipid synthase 2, CmaA2 (EC 2.1.1.79)	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00821901: hypothetical protein, Rv0504c	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Phosphoserine phosphatase (EC 3.1.3.3)	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS2	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL2	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00822170: hypothetical protein, Rv0508	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Glutamyl-tRNA reductase (EC 1.2.1.70)	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Porphobilinogen deaminase (EC 2.5.1.61)	Mycobacterial_MmpL2_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Membrane bound polyketide synthase Pks6	Mycobacterial_MmpL1_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30	Mycobacterial_MmpL1_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS1	Mycobacterial_MmpL1_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL1	Mycobacterial_MmpL1_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01121868: Possible membrane protein, Rv0401	Mycobacterial_MmpL1_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE7	Mycobacterial_MmpL1_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01121868: Possible membrane protein, Rv0680	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS5	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL5	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Enoyl-CoA hydratase EchA5 (EC 4.2.1.17)	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Phenylacetic acid degradation operon negative regulatory protein PaaX	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Enoyl-CoA hydratase EchA4 (EC 4.2.1.17)	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE8	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01121868: Possible membrane protein, Rv0679c	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00822074: hypothetical protein, Rv0678	Mycobacterial_MmpL5_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00013075: PPE family protein	Mycobacterial_MmpL4_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00554417: Transcriptional regulator, Rv0452	Mycobacterial_MmpL4_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS4	Mycobacterial_MmpL4_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL4	Mycobacterial_MmpL4_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
COG2907: Amine oxidase, flavin-containing	Mycobacterial_MmpL4_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Hypothetical protein COG3496	Mycobacterial_MmpL4_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type	Mycobacterial_MmpL4_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
LSU ribosomal protein L21p	CBSS-176279.3.peg.868	Clustering-based subsystems	
FIG139598: Potential ribosomal protein	CBSS-176279.3.peg.868	Clustering-based subsystems	
LSU ribosomal protein L27p	CBSS-176279.3.peg.868	Clustering-based subsystems	
GTP-binding protein Obg	CBSS-176279.3.peg.868	Clustering-based subsystems	
50S ribosomal protein acetyltransferase	CBSS-176279.3.peg.868	Clustering-based subsystems	
FIG104146: hypothetical protein	CBSS-292414.1.peg.3669	Clustering-based subsystems	
FIG115103: hypothetical protein	CBSS-292414.1.peg.3669	Clustering-based subsystems	
LSU ribosomal protein L21p	CBSS-292414.1.peg.3669	Clustering-based subsystems	
LSU ribosomal protein L27p	CBSS-292414.1.peg.3669	Clustering-based subsystems	
FIG059814: Transporter, LysE family	CBSS-292414.1.peg.3669	Clustering-based subsystems	
50S ribosomal protein acetyltransferase	CBSS-292414.1.peg.3669	Clustering-based subsystems	
GTP-binding protein Obg	CBSS-292414.1.peg.3669	Clustering-based subsystems	
Glutamate 5-kinase (EC 2.7.2.11)	CBSS-292414.1.peg.3669	Clustering-based subsystems	
FIG001154: CcsA-related protein	CBSS-320390.3.peg.528	Clustering-based subsystems	
Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	CBSS-320390.3.peg.528	Clustering-based subsystems	
Multiple antibiotic resistance (MarC) -related proteins	CBSS-320390.3.peg.528	Clustering-based subsystems	
Prolyl-tRNA synthetase (EC 6.1.1.15)	CBSS-320390.3.peg.528	Clustering-based subsystems	
Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)	CBSS-320390.3.peg.528	Clustering-based subsystems	
FIG005426: hypothetical protein	CBSS-320390.3.peg.528	Clustering-based subsystems	
Glutamate 5-kinase (EC 2.7.2.11)	CBSS-320390.3.peg.528	Clustering-based subsystems	
GTP-binding protein Obg	CBSS-320390.3.peg.528	Clustering-based subsystems	
LSU ribosomal protein L27p	CBSS-320390.3.peg.528	Clustering-based subsystems	
LSU ribosomal protein L21p	CBSS-320390.3.peg.528	Clustering-based subsystems	
FIG002203: Octaprenyl-diphosphate synthase (EC 2.5.1.-)	CBSS-320390.3.peg.528	Clustering-based subsystems	
GTP-binding protein EngA	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTP-binding protein EngB	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTP-binding protein Era	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTP-binding protein HflX	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTP-binding protein TypA/BipA	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTPase and tRNA-U34 5-formylation enzyme TrmE	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Ribosome small subunit-stimulated GTPase EngC	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Translation elongation factor G	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Translation elongation factor LepA	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Translation elongation factor Tu	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Translation initiation factor 2	Universal_GTPases	Protein Metabolism	Protein biosynthesis
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTP-binding and nucleic acid-binding protein YchF	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Translation elongation factor 1 alpha subunit	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Translation elongation factor 2	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTP-binding protein Obg	Universal_GTPases	Protein Metabolism	Protein biosynthesis
GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit	Universal_GTPases	Protein Metabolism	Protein biosynthesis
Probable GTPase related to EngC	Universal_GTPases	Protein Metabolism	Protein biosynthesis
probably aromatic ring hydroxylating enzyme, evidenced by COGnitor	Streptococcal_group_antigen_operons		
dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	Streptococcal_group_antigen_operons		
Alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase (EC 2.4.1.-)	Streptococcal_group_antigen_operons		
Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-)	Streptococcal_group_antigen_operons		
rhamnose-containing polysacharide translocation permease	Streptococcal_group_antigen_operons		
ABC-transporter (ATP-binding protein) -possibly involved in cell wall localization and side chain formation of rhamnose-glucose polysaccharide	Streptococcal_group_antigen_operons		
putative glycosyltransferase - possibly involved in cell wall localization and side chain formation of rhamnose-glucose polysaccharide	Streptococcal_group_antigen_operons		
Alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L- rhamnosyltransferase (EC 2.4.1.-)	Streptococcal_group_antigen_operons		
Phosphoglycerol transferase	Streptococcal_group_antigen_operons		
Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-)	Streptococcal_group_antigen_operons		
Heteropolysaccharide repeat unit export protein	Streptococcal_group_antigen_operons		
membrane protein, related to Actinobacillus protein (1944168)	Streptococcal_group_antigen_operons		
Glycosyltransferase (EC 2.4.1.-), group 1 family protein	Streptococcal_group_antigen_operons		
UDP-glucose 4-epimerase (EC 5.1.3.2)	Streptococcal_group_antigen_operons		
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	Streptococcal_group_antigen_operons		
Tripeptide aminopeptidase (EC 3.4.11.4)	Streptococcal_group_antigen_operons		
Membrane protein SPy0796	Streptococcal_group_antigen_operons		
Conjugation pore forming protein EbsA	Streptococcal_group_antigen_operons		
Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	Streptococcal_group_antigen_operons		
Lipoprotein involved in the synthesis of group B streptococcal carboyhdrate antigen	Streptococcal_group_antigen_operons		
Lipopolysaccharide cholinephosphotransferase LicD1 (EC 2.7.8.-)	Streptococcal_group_antigen_operons		
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	Streptococcal_group_antigen_operons		
dTDP-rhamnosyl transferase RfbF (EC 2.-.-.-)	Streptococcal_group_antigen_operons		
Putative UDP-dependent alpha-galactosyltransferase, GalT	Streptococcal_group_antigen_operons		
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD11	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Fumarate reductase subunit C	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Fumarate reductase subunit D	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00554417: Transcriptional regulator, Rv1556	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL6	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00862767: Possible nitroreductase, Rv1558	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Threonine dehydratase (EC 4.3.1.19)	Mycobacterial_MmpL6_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Mycocerosic acid synthase (EC 2.3.1.111) mas	Mycobacterial_MmpL7_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD28	Mycobacterial_MmpL7_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL7	Mycobacterial_MmpL7_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Lipoprotein LppX	Mycobacterial_MmpL7_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Polyketide synthase Pks1	Mycobacterial_MmpL7_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG00823443: hypothetical protein, Rv2336	Mycobacterial_MmpL9_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG031860: hypothetical protein, Rv2337c	Mycobacterial_MmpL9_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Molybdopterin biosynthesis protein MoeW	Mycobacterial_MmpL9_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL9	Mycobacterial_MmpL9_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01311212: PE family protein	Mycobacterial_MmpL9_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Lipoprotein LppQ	Mycobacterial_MmpL9_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Proline 2-methylase for pyrrolysine biosynthesis	tRNA_aminoacylation,_Pyr	Protein Metabolism	Protein biosynthesis
Proline reductase for pyrrolysine biosynthesis	tRNA_aminoacylation,_Pyr	Protein Metabolism	Protein biosynthesis
Pyrrolysine synthetase	tRNA_aminoacylation,_Pyr	Protein Metabolism	Protein biosynthesis
Pyrrolysyl-tRNA synthetase, amino domain (EC 6.1.1.26)	tRNA_aminoacylation,_Pyr	Protein Metabolism	Protein biosynthesis
Pyrrolysyl-tRNA synthetase, carboxy domain (EC 6.1.1.26)	tRNA_aminoacylation,_Pyr	Protein Metabolism	Protein biosynthesis
pyrrolysine-containing	tRNA_aminoacylation,_Pyr	Protein Metabolism	Protein biosynthesis
Arginyl-tRNA synthetase (EC 6.1.1.19)	tRNA_aminoacylation,_Arg	Protein Metabolism	Protein biosynthesis
Arginyl-tRNA synthetase related protein 1	tRNA_aminoacylation,_Arg	Protein Metabolism	Protein biosynthesis
Arginyl-tRNA synthetase related protein 2	tRNA_aminoacylation,_Arg	Protein Metabolism	Protein biosynthesis
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
Cysteinyl-tRNA synthetase (EC 6.1.1.16), mitochondrial	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
Cysteinyl-tRNA synthetase (EC 6.1.1.16), chloroplast	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
Cysteinyl-tRNA synthetase paralog 2	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
domain similar to cysteinyl-tRNA synthetase and MshC	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
Cysteinyl-tRNA synthetase paralog 1	tRNA_aminoacylation,_Cys	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase (EC 6.1.1.7)	tRNA_aminoacylation,_Ala	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase family protein	tRNA_aminoacylation,_Ala	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase, amino-terminal half (EC 6.1.1.7)	tRNA_aminoacylation,_Ala	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase, carboxy-terminal half (EC 6.1.1.7)	tRNA_aminoacylation,_Ala	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase domain protein	tRNA_aminoacylation,_Ala	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase (EC 6.1.1.7), mitochondrial	tRNA_aminoacylation,_Ala	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase (EC 6.1.1.7), chloroplast	tRNA_aminoacylation,_Ala	Protein Metabolism	Protein biosynthesis
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	CBSS-342610.3.peg.283	Clustering-based subsystems	D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster
Ribonuclease BN (EC 3.1.-.-)	CBSS-342610.3.peg.283	Clustering-based subsystems	D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	D-tyrosyl-tRNA(Tyr)_deacylase	Stress Response	Detoxification
Cell division protein FtsZ (EC 3.4.24.-)	MCO	Experimental Subsystems	
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	MCO	Experimental Subsystems	
FIG001341: Probable Fe(2+)-trafficking protein YggX	MCO	Experimental Subsystems	
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)	MCO	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	MCO	Experimental Subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	MCO	Experimental Subsystems	
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	MCO	Experimental Subsystems	
COG1496: Uncharacterized conserved protein	MCO	Experimental Subsystems	
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	MCO	Experimental Subsystems	
UPF0235 protein VC0458	MCO	Experimental Subsystems	
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	MCO	Experimental Subsystems	
FIG003551: hypothetical protein	MCO	Experimental Subsystems	
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	MCO	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	MCO	Experimental Subsystems	
Protein often near L-alanine-DL-glutamate epimerase (cell wall recycling)	MCO	Experimental Subsystems	
Magnesium and cobalt transport protein CorA	MCO	Experimental Subsystems	
Cell division protein YlmG/Ycf19 (putative), YggT family	MCO	Experimental Subsystems	
HAM1-like protein	MCO	Experimental Subsystems	
FtsZ like protein I1	MCO	Experimental Subsystems	
tubulin/FtsZ family, GTPase domain protein	MCO	Experimental Subsystems	
Similar to coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	MCO	Experimental Subsystems	
FtsZ-like protein I2	MCO	Experimental Subsystems	
ftsZ/tubulin-related protein	MCO	Experimental Subsystems	
D-aminoacyl-tRNA deacylase	MCO	Experimental Subsystems	
protein YggU	MCO	Experimental Subsystems	
Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW	MCO	Experimental Subsystems	
protein uncharacterized ACR, YggU family COG1872 containing protein, expressed	MCO	Experimental Subsystems	
Adenine phosphoribosyltransferase (EC 2.4.2.7)	Stringent_Response,_(p)ppGpp_metabolism	Regulation and Cell signaling	
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	Stringent_Response,_(p)ppGpp_metabolism	Regulation and Cell signaling	
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I	Stringent_Response,_(p)ppGpp_metabolism	Regulation and Cell signaling	
Histidyl-tRNA synthetase (EC 6.1.1.21)	Stringent_Response,_(p)ppGpp_metabolism	Regulation and Cell signaling	
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II	Stringent_Response,_(p)ppGpp_metabolism	Regulation and Cell signaling	
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)	Stringent_Response,_(p)ppGpp_metabolism	Regulation and Cell signaling	
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (EC 3.6.1.40)	Stringent_Response,_(p)ppGpp_metabolism	Regulation and Cell signaling	
Tyrosyl-tRNA synthetase (EC 6.1.1.1)	tRNA_aminoacylation,_Tyr	Protein Metabolism	Protein biosynthesis
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	tRNA_aminoacylation,_Tyr	Protein Metabolism	Protein biosynthesis
Tyrosyl-tRNA synthetase (EC 6.1.1.1), mitochondrial	tRNA_aminoacylation,_Tyr	Protein Metabolism	Protein biosynthesis
Polyketide beta-ketoacyl synthase Pks4	Mycobacterial_MmpL10_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Polyketide synthase associated protein PapA3	Mycobacterial_MmpL10_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL10	Mycobacterial_MmpL10_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01386146: Possible exported protein, Rv1184c	Mycobacterial_MmpL10_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD21	Mycobacterial_MmpL10_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Polyketide synthase Pks5	Mycobacterial_MmpL12_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Uncharacterized protein Rv1526c/MT1577	Mycobacterial_MmpL12_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
POSSIBLE RHAMNOSYL TRANSFERASE WBBL2	Mycobacterial_MmpL12_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Uncharacterized glycosyltransferase Rv1524/MT1575 (EC 2.-.-.-)	Mycobacterial_MmpL12_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Probable methyltransferase (EC 2.1.1.-)	Mycobacterial_MmpL12_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Putative membrane protein MmpL12	Mycobacterial_MmpL12_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25	Mycobacterial_MmpL12_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Polyketide synthase Pks2	Mycobacterial_MmpL8_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Polyketide synthase associated protein PapA1	Mycobacterial_MmpL8_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL8	Mycobacterial_MmpL8_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01121868: Possible membrane protein, Rv3822	Mycobacterial_MmpL8_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
FIG01121868: Possible membrane protein, Rv3821	Mycobacterial_MmpL8_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Polyketide synthase associated protein PapA2	Mycobacterial_MmpL8_membrane_protein_cluster	Virulence	Resistance to antibiotics and toxic compounds
Valyl-tRNA synthetase (EC 6.1.1.9)	tRNA_aminoacylation,_Val	Protein Metabolism	Protein biosynthesis
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	tRNA_aminoacylation,_Phe	Protein Metabolism	Protein biosynthesis
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	tRNA_aminoacylation,_Phe	Protein Metabolism	Protein biosynthesis
Protein with domain from phenylalanyl-tRNA synthetase alpha chain	tRNA_aminoacylation,_Phe	Protein Metabolism	Protein biosynthesis
Methionyl-tRNA synthetase (EC 6.1.1.10)	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Structure-specific tRNA-binding protein trbp111	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Multisynthetase complex auxiliary component p43	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Methionyl-tRNA synthetase (EC 6.1.1.10), mitochondrial	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Methionyl-tRNA synthetase (EC 6.1.1.10), chloroplast	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Methionyl-tRNA synthetase-related protein 2	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Methionyl-tRNA synthetase, clostridial paralog	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Structure-specific tRNA-binding protein	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
tRNA-binding protein YgjH	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
Methionyl-tRNA synthetase-related protein	tRNA_aminoacylation,_Met	Protein Metabolism	Protein biosynthesis
N,N'-diacetylchitobiose-specific regulator ChbR, AraC family	Chitobiose	Carbohydrates	Di- and oligosaccharides
PTS system, N,N'-diacetylchitobiose-specific IIA component	Chitobiose	Carbohydrates	Di- and oligosaccharides
PTS system, N,N'-diacetylchitobiose-specific IIB component (EC 2.7.1.69)	Chitobiose	Carbohydrates	Di- and oligosaccharides
PTS system, N,N'-diacetylchitobiose-specific IIC component	Chitobiose	Carbohydrates	Di- and oligosaccharides
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86)	Chitobiose	Carbohydrates	Di- and oligosaccharides
N,N'-diacetylchitobiose utilization operon protein YdjC	Chitobiose	Carbohydrates	Di- and oligosaccharides
Heat shock protein 60 family chaperone GroEL	GroEL_GroES	Protein Metabolism	Protein folding
Heat shock protein 60 family co-chaperone GroES	GroEL_GroES	Protein Metabolism	Protein folding
Mannosyltransferase WboA	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannosyltransferase WboB	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannosyltransferase WbkA	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Phosphomannomutase ManB (EC 5.4.2.8)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannose-1-phosphate guanylyltransferase (GDP) ManC (EC 2.7.7.22)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannose-6-phosphate isomerase ManC (EC 5.3.1.8)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannose-6-phosphate isomerase ManA (EC 5.3.1.8)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannosyltransferase WbkE	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
GDP-mannose 4,6 dehydratase Gmd (EC 4.2.1.47)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Perosamine synthetase Per	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
O-antigen export system permease protein Wzm	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
O-antigen export system, ATP-binding protein Wzt	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Perosamine synthetase WbkB	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Formyltransferase WbkC	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Undecaprenyl-glycosyltransferase WbkF	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Epimerase/dehydratase WbkD	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Lipopolysaccharide core biosynthesis glycosyltransferase WadA	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Lipopolysaccharide core biosynthesis mannosyltransferase WadC	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Phosphomannomutase (EC 5.4.2.8)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannose-6-phosphate isomerase (EC 5.3.1.8)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)	Brucella_Wbk_Region_and_LPS_genes	Cell Wall and Capsule	Capsular and extracellular polysacchrides
FUPA25 P-type ATPase	Family_25_FUPA25_P-type_ATPase		
amino acid permease	Family_25_FUPA25_P-type_ATPase		
Regulator of polyketide synthase expression	Family_25_FUPA25_P-type_ATPase		
Nitroreductase	Family_25_FUPA25_P-type_ATPase		
Universal stress protein family	Family_25_FUPA25_P-type_ATPase		
Transcription accessory protein (S1 RNA-binding domain)	Family_25_FUPA25_P-type_ATPase		
Phytoene dehydrogenase and related proteins	Family_25_FUPA25_P-type_ATPase		
SIMPL superfamily hypothetical protein	Family_25_FUPA25_P-type_ATPase		
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)	Family_25_FUPA25_P-type_ATPase		
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Family_25_FUPA25_P-type_ATPase		
DNA-binding protein	Family_25_FUPA25_P-type_ATPase		
Radical SAM domain heme biosynthesis protein	Family_25_FUPA25_P-type_ATPase		
COG4129 hypothetical protein	Family_25_FUPA25_P-type_ATPase		
putative Gluconate kinase	Family_25_FUPA25_P-type_ATPase		
hypothetical protein SCJ1.10c	Family_25_FUPA25_P-type_ATPase		
Glutaminase (EC 3.5.1.2)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Glutamate decarboxylase (EC 4.1.1.15)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Putrescine ABC transporter putrescine-binding protein potF (TC 3.A.1.11.2)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Putrescine aminotransferase (EC 2.6.1.82)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Putative aminotransferase in phosphonate-related cluster	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Glutamate decarboxylase, eukaryotic type (EC 4.1.1.15)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Probable glutamate/gamma-aminobutyrate antiporter	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
4-hydroxybutyrate:acetyl-CoA CoA transferase (EC 2.3.1.-)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
4-hydroxybutanoyl-CoA dehydratase (EC 4.2.1.-)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Vinylacetyl-CoA Delta-isomerase (EC 5.3.3.3)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Pyridoxine 4-oxidase (EC 1.1.3.12)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
gamma-aminobutyrate (GABA) permease	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Carbon starvation induced protein CsiD	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Putative dehydrogenase YgaF in csiD-gabDTP operon	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
CsiR, transcriptional repressor of csiD	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
2-(acetamidomethylene)succinate hydrolase (EC 3.5.1.29)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
NAD-dependent 4-hydroxybutyrate dehydrogenase (EC 1.1.1.61)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Succinate-semialdehyde dehydrogenase, CoA-dependent	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
Succinyl-CoA:coenzyme A transferase (EC 2.8.3.-)	Gamma-aminobutyrate_(GABA)_shunt	Experimental Subsystems	
S-adenosylmethionine synthetase (EC 2.5.1.6)	Louis_HMTs		
Homocysteine S-methyltransferase (EC 2.1.1.10)	Louis_HMTs		
S-methylmethionine permease	Louis_HMTs		
Arginine/ornithine antiporter ArcD	Louis_HMTs		
Adenosylhomocysteinase (EC 3.3.1.1)	Louis_HMTs		
Methionine S-methyltransferase (EC 2.1.1.12)	Louis_HMTs		
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)	Louis_HMTs		
AdoMet-AdoHcy transporter	Louis_HMTs		
(Betaine) homocysteine S-methyltransferase	Louis_HMTs		
AdoMet-AdoHcy transporter 2	Louis_HMTs		
Diacylglycerol kinase (EC 2.7.1.107)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Deoxyguanosine kinase (EC 2.7.1.113)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Tagatose-6-phosphate kinase (EC 2.7.1.144)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Aminoglycoside 3'-phosphotransferase (EC 2.7.1.95)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Diacylglycerol kinase, Bacillus type (EC 2.7.1.107)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Adenosylcobinamide kinase (EC 2.7.1.156)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
CTP-dependent archaeal riboflavin kinase (EC 2.7.1.161)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Polynucleotide kinase (EC 2.7.1.78)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Undecaprenol kinase (EC 2.7.1.66)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
6-phosphofructo-2-kinase (EC 2.7.1.105)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
Viomycin kinase (EC 2.7.1.103)	EC_2.7.1.-_Phosphotransferases_with_an_alcohol_group_as_acceptor	Miscellaneous	
3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	3-keto-L-gulonate-6-phosphate_decarboxylase	Experimental Subsystems	
L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.22)	3-keto-L-gulonate-6-phosphate_decarboxylase	Experimental Subsystems	
L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4)	3-keto-L-gulonate-6-phosphate_decarboxylase	Experimental Subsystems	
3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D)	3-keto-L-gulonate-6-phosphate_decarboxylase	Experimental Subsystems	
L-ribulose-5-phosphate 3-epimerase UlaE (EC 5.1.3.22) (L-ascorbate utilization protein E)	3-keto-L-gulonate-6-phosphate_decarboxylase	Experimental Subsystems	
3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Ascorbate utilization transcriptional regulator UlaR, HTH-type	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Ascorbate-specific PTS system, EIIC component	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
L-ribulose-5-phosphate 3-epimerase UlaE (EC 5.1.3.22) (L-ascorbate utilization protein E)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.22)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Ribulokinase (EC 2.7.1.16)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
3-keto-L-gulonate 6-phosphate decarboxylase	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Transcriptional antiterminator with PTS regulation domain, SPy0181 ortholog	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
Putative 2-keto-3-deoxygluconate kinase (EC 2.7.1.45)	L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	Monosaccharides
tRNA-i(6)A37 methylthiotransferase	Methylthiotransferases	RNA Metabolism	RNA processing and modification
tRNA-t(6)A37 methylthiotransferase	Methylthiotransferases	RNA Metabolism	RNA processing and modification
Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase	Methylthiotransferases	RNA Metabolism	RNA processing and modification
tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase (putative)	Methylthiotransferases	RNA Metabolism	RNA processing and modification
ARGININE-SYN	17092		
ARGININE-SYN			
Pentose-Phosphate-Cycle	28162		
Pentose-Phosphate-Cycle	27477		
Pentose-Phosphate-Cycle	45938		
LSU ribosomal protein L1p (L10Ae)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L2p (L8e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L3p (L3e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L4p (L1e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L5p (L11e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L6p (L9e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L7/L12 (P1/P2)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L9p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L10p (P0)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L11p (L12e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L13p (L13Ae)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L14p (L23e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L15p (L27Ae)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L16p (L10e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L17p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L18p (L5e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L19p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L20p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L21p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L22p (L17e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L23p (L23Ae)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L24p (L26e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L25p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L27p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L29p (L35e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L30p (L7e)	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L33p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L34p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L35p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36p	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
Firmicutes ribosomal L7Ae family protein	Ribosome_LSU_bacterial	Protein Metabolism	Protein biosynthesis
Putative stomatin/prohibitin-family membrane protease subunit aq_911	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Translation elongation factor LepA	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Protein RtcB	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Protein with similarity to RtcB	RtcB_RtcA	RNA Metabolism	RNA processing and modification
RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Uncharacterized acetyltransferase YafP (EC 2.3.1.-)	RtcB_RtcA	RNA Metabolism	RNA processing and modification
COG3541: Predicted nucleotidyltransferase	RtcB_RtcA	RNA Metabolism	RNA processing and modification
RNA-2',3'-PO4:RNA-5'-OH ligase	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Archease	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Phosphoribosyl transferase domain protein	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Putative ribonucleoprotein related-protein TROVE Domain	RtcB_RtcA	RNA Metabolism	RNA processing and modification
RtcB-like protein	RtcB_RtcA	RNA Metabolism	RNA processing and modification
Fimbriae usher protein StfC	The_fimbrial_Stf_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Major fimbrial subunit StfA	The_fimbrial_Stf_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Periplasmic fimbrial chaperone StfD	The_fimbrial_Stf_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Uncharacterized protein YadU in stf fimbrial cluster	The_fimbrial_Stf_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Minor fimbrial subunit StfF	The_fimbrial_Stf_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Minor fimbrial subunit StfG	The_fimbrial_Stf_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Minor fimbrial subunit StfE	The_fimbrial_Stf_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbriae-like adhesin SfmA	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial periplasmic chaperone SfmC	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Outer membrane usher protein SfmD	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbriae-like adhesin SfmH	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbriae-like periplasmic protein SfmF	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family)	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Transcriptional regulator of fimbriae expression FimY	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbriae-like adhesin FimI	The_fimbrial_Sfm_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein YadN	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Chaperone protein EcpD	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Outer membrane usher protein HtrE	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein YadL	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein YadK	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein YadC	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein YadM	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein Yad-like	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein YadN-like	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
Fimbrial protein YadM-like	The_usher_protein_HtrE_fimbrial_cluster	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
FIGfam014588: Predicted regulator of CFA/I fimbriae	Colonization_factor_antigen_I_fimbriae	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
CFA/I fimbrial major subunit	Colonization_factor_antigen_I_fimbriae	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
CFA/I fimbrial auxiliary subunit	Colonization_factor_antigen_I_fimbriae	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
CFA/I fimbrial subunit C usher protein	Colonization_factor_antigen_I_fimbriae	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
CFA/I fimbrial minor adhesin	Colonization_factor_antigen_I_fimbriae	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
CFA/I fimbrial chaperone	Colonization_factor_antigen_I_fimbriae	Membrane Transport	Protein secretion system, Chaperone-Usher pathway (CU)
FIG000859: hypothetical protein YebC	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
FIG002344: Hydrolase (HAD superfamily)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
FIG006542: Phosphoesterase	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Lipoate-protein ligase A	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
N-terminal domain of CinA protein, COG1058	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA type S	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
RecA protein	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
DNA mismatch repair protein MutL	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Thiamine-monophosphate kinase (EC 2.7.4.16)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Lipoate synthase	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
2'-5' RNA ligase	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
UPF0125 protein yfjF	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA type E	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphatidylglycerophosphatase A (EC 3.1.3.27)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Sugar/maltose fermentation stimulation protein homolog	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted ATP-dependent endonuclease of the OLD family, YbjD subgroup	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
glutamyl-Q-tRNA synthetase	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Poly(A) polymerase (EC 2.7.7.19)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
RNA:NAD 2'-phosphotransferase	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
C-terminal domain of CinA paralog, YdeJ	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	Competence_or_DNA_damage-inducible_protein_CinA_and_related_protein_families	Miscellaneous	Plant-Prokaryote comparative genomics
Protein ydcF	Unknown_methylase_Ecoli	Experimental Subsystems	
hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]	Unknown_methylase_Ecoli	Experimental Subsystems	
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-)	Unknown_methylase_Ecoli	Experimental Subsystems	
SAM-dependent methyltransferase YafE (UbiE paralog)	Unknown_methylase_Ecoli	Experimental Subsystems	
SSU ribosomal protein SAe (S2p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S2e (S5p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S3Ae	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S3e (S3p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S4e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S5e (S7p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S6e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S8e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S9e (S4p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S11e (S17p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S13e (S15p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S14e (S11p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S15Ae (S8p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S15e (S19p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S16e (S9p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S17e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S18e (S13p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S19e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S20e (S10p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S23e (S12p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S24e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S25e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S26e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S27Ae	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S27e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S28e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S29e (S14p)	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S30e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S10e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S7e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S12e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S21e	Ribosome_SSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein P0 (L10p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L1e (L4p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L3e (L3p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L5e (L18p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L7e (L30p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L7Ae	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L8e (L2p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L9e (L6p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L10e (L16p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L10Ae (L1p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L11e (L5p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L12a (P1/P2)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L12e (L11p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L13e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L13Ae (L13p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L14e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L15e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L17e (L22p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L18e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L18Ae	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L19e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L21e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L23e (L14p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L23Ae (L23p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L24e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L26e (L24p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L27Ae (L15p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L30e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L34e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L35e (L29p)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L37e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L37Ae	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L38e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L39e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L40e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L44e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L41e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L35Ae	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein P2 (L7/L12)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L29e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36e	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein P1 (L7/L12)	Ribosome_LSU_eukaryotic_and_archaeal	Protein Metabolism	Protein biosynthesis
Late competence protein ComC, processing protease	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComEA, DNA receptor	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComEB	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComEC, DNA transport	Late_competence	DNA Metabolism	DNA uptake, competence
ComF operon protein A, DNA transporter ATPase	Late_competence	DNA Metabolism	DNA uptake, competence
ComF operon protein C	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGA, access of DNA to ComEA	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGB, access of DNA to ComEA	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGC, access of DNA to ComEA, FIG007487	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGD, access of DNA to ComEA, FIG012777	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGE, FIG018915	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGF, access of DNA to ComEA, FIG017774	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGE, FIG015564	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGF, access of DNA to ComEA, FIG012620	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGG, FIG007920	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComER, similarity with Pyrroline-5-carboxylate reductase	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGE, FIG015513	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGG, FIG028917	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGD, access of DNA to ComEA, FIG038316	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGE, FIG075573	Late_competence	DNA Metabolism	DNA uptake, competence
Late competence protein ComGG, FIG068335	Late_competence	DNA Metabolism	DNA uptake, competence
DNA binding protein, FIG046916	Late_competence	DNA Metabolism	DNA uptake, competence
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Proline_Synthesis	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Glutamate 5-kinase (EC 2.7.2.11)	Proline_Synthesis	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Proline_Synthesis	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Proline_Synthesis	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Late competence protein ComER, similarity with Pyrroline-5-carboxylate reductase	Proline_Synthesis	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	Proline_Synthesis	Amino Acids and Derivatives	Proline and 4-hydroxyproline
SSU ribosomal protein S12p (S23e)	Ribosomal_protein_S12p_Asp_methylthiotransferase	Protein Metabolism	Protein processing and modification
Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase	Ribosomal_protein_S12p_Asp_methylthiotransferase	Protein Metabolism	Protein processing and modification
tRNA-i(6)A37 methylthiotransferase	Ribosomal_protein_S12p_Asp_methylthiotransferase	Protein Metabolism	Protein processing and modification
tRNA-t(6)A37 methylthiotransferase	Ribosomal_protein_S12p_Asp_methylthiotransferase	Protein Metabolism	Protein processing and modification
Aspartate N-acetyltransferase (EC 2.3.1.17)	Mycobacterium_jamboree	Miscellaneous	
UDP-N-acetylmuramic acid hydroxylase	Mycobacterium_jamboree	Miscellaneous	
3beta-hydroxy-Delta5-steroid dehydrogenase (EC 1.1.1.145)	Mycobacterium_jamboree	Miscellaneous	
3,4-dihydroxy-9,10-seconandrost-1,3,5(10)-triene-9,17-dione dioxygenase	Mycobacterium_jamboree	Miscellaneous	
Spermine oxidase (EC 1.5.3.16)	Mycobacterium_jamboree	Miscellaneous	
Non-specific polyamine oxidase (EC 1.5.3.17)	Mycobacterium_jamboree	Miscellaneous	
TATA-box binding protein	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIB	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IID 150 kD subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IID 145 kDa subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IID 90 kDa subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IID 60 kDa subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIE alpha subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIE beta subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIF alpha subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIF beta subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIH p90 subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIH p80 subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIH p52 subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIH p44 subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIH p34 subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
CDK-activating kinase assembly factor MAT1	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIH cyclin-dependent kinase 7	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIA large subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IID 23 kDa subunit	RNA_polymerase_II_initiation_factors	RNA Metabolism	Transcription
TATA-box binding protein	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
RNA polymerase III transcription initiation factor B''	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
RNA polymerase III transcription initiation factor (TFIIIC) 131 kDa subunit	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
RNA polymerase III transcription initiation factor (TFIIIC) 95 kDa subunit	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
RNA polymerase III transcription initiation factor (TFIIIC) 55 kDa subunit	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor TFIIIB, Brf2 subunit	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
Transcription initiation factor IIIA	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
RNA polymerase III transcription initiation factor (TFIIIC) 138 kDa subunit	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
RNA polymerase III transcription initiation factor (TFIIIC) 91 kDa subunit	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
RNA polymerase III transcription initiation factor (TFIIIC) 60 kDa subunit	RNA_polymerase_III_initiation_factors	RNA Metabolism	Transcription
DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerase II second largest subunit (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerase II 45 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerase II 32 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 15 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerase II 13.2 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerase II 13.3 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_II	RNA Metabolism	Transcription
DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III second largest subunit (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 74 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 47 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerases I and III 40 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 37/80 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 36 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 15 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 25 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerases I and III 16 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 17 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 12.5 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase III 31 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_III	RNA Metabolism	Transcription
DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerase I second largest subunit (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerase I 49 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerases I and III 40 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerase I 36 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 15 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerase I 13.7 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerases I and III 16 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
DNA-directed RNA polymerase I 34 kDa polypeptide (EC 2.7.7.6)	RNA_polymerase_I	RNA Metabolism	Transcription
Beta-galactosidase (EC 3.2.1.23)	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Sialidase (EC 3.2.1.18)	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Arylsulfatase (EC 3.1.6.1)	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Glycoprotein gp2	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Neuraminidase NanP	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
probable beta-D-galactosidase	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Beta-galactosidase 3	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Beta-galactosidase large subunit (EC 3.2.1.23)	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Beta-galactosidase small subunit (EC 3.2.1.23)	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Galactocerebrosidase precursor (EC 3.2.1.46)	Galactosylceramide_and_Sulfatide_metabolism	Sulfur Metabolism	
Lactose and galactose permease, GPH translocator family	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-galactosidase (EC 3.2.1.23)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Aldose 1-epimerase (EC 5.1.3.3)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactokinase (EC 2.7.1.6)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
UDP-glucose 4-epimerase (EC 5.1.3.2)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose operon repressor, GalR-LacI family of transcriptional regulators	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Lactose phosphotransferase system repressor	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, lactose-specific IIA component (EC 2.7.1.69)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, lactose-specific IIB component (EC 2.7.1.69)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, lactose-specific IIC component (EC 2.7.1.69)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
6-phospho-beta-galactosidase (EC 3.2.1.85)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose-6-phosphate isomerase, LacA subunit (EC 5.3.1.26)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose-6-phosphate isomerase, LacB subunit (EC 5.3.1.26)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Tagatose-6-phosphate kinase (EC 2.7.1.144)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, galactose-specific IIA component (EC 2.7.1.69)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, galactose-specific IIB component (EC 2.7.1.69)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
PTS system, galactose-specific IIC component (EC 2.7.1.69)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Alpha-galactosidase (EC 3.2.1.22)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-galactosidase large subunit (EC 3.2.1.23)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-galactosidase small subunit (EC 3.2.1.23)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Lactose permease	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Transcriptional repressor of the lac operon	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-galactosidase (EC 3.2.1.23), LacZ family	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Beta-galactosidase (EC 3.2.1.23), LacA family	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter, sugar-binding protein	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter, permease protein 1	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter, permease protein 2	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter, ATP-binding protein 1	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter, ATP-binding protein 2	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted regulator of galactoside utilization, LacI family	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Galactose permease	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter type II, sugar-binding protein	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter type II, permease protein 2	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Predicted galactoside ABC transporter type II, permease protein 1	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	Di- and oligosaccharides
Ribulokinase (EC 2.7.1.16)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabinose isomerase (EC 5.3.1.4)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Arabinose-proton symporter	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Arabinose operon protein AraL	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
rhamnogalacturonan acetylesterase	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Alpha-galactosidase (EC 3.2.1.22)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted rhamnose oligosaccharide ABC transport system, permease component	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Putative glycosyl hydrolase of unknown function (DUF1680)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Arabinose operon regulatory protein	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabinose transport system permease protein (TC 3.A.1.2.2)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Protein AraJ precursor	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Alpha-xylosidase (EC 3.2.1.-)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Alpha-mannosidase (EC 3.2.1.24)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Possible GPH family transporter (TC 2.A.2) for arabinosides	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Alpha-arabinosides ABC transport system, permease protein AraQ	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
sugar ABC transporter, permease protein	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
ABC-type sugar transport system, permease component	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabinose-specific 1-epimerase (mutarotase)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
ABC transport system, sugar-binding protein	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
COG3866 Pectate lyase	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Transcriptional regulator of the arabinose operon in Shewanella, GntR family	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabinolactonase (EC 3.1.1.15)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabonate dehydratase (EC 4.2.1.25)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
L-arabinose 1-dehydrogenase (EC 1.1.1.46)	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
COG5434 Endopygalactorunase	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted L-arabinose ABC transport system, permease protein 1	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted L-arabinose ABC transport system, ATP-binding protein	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted L-arabinose ABC transport system, permease protein 2	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Putative oxidoreductase in arabinose utilization cluster	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Transcriptional repressor of the arabinose operon	COG3533	Miscellaneous	Plant-Prokaryote comparative genomics
Purine nucleoside phosphorylase (EC 2.4.2.1)	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
hypothetical protein Bcep3774, commonly clustered with carotenoid biosynthesis	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein VF1653	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein BA2564	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein BCZK2595	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
hydrolase, haloacid dehalogenase-like family protein BCZK2594	Adenosyl_nucleosidases	Nucleosides and Nucleotides	
Chorismate--pyruvate lyase (EC 4.1.3.40)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis monooxygenase UbiB	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Putative monooxygenase VisC	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Uncharacterized hydroxylase PA0655	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	Ubiquinone_biosynthesis_--_gjo	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) PUA domain	PUA_domain	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	PUA_domain	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2	PUA_domain	Experimental Subsystems	
conserved protein with predicted RNA binding PUA domain	PUA_domain	Experimental Subsystems	
PUA domain fused with PAPS reductase-like protein	PUA_domain	Experimental Subsystems	
PAPS reductase-like domain	PUA_domain	Experimental Subsystems	
tRNA/RNA cytosine-C5-methylase (EC 2.1.1.-)	PUA_domain	Experimental Subsystems	
tRNA pseudouridine 55 synthase (EC 4.2.1.70)	PUA_domain	Experimental Subsystems	
Sulfate adenylyltransferase (EC 2.7.7.4)	PUA_domain	Experimental Subsystems	
Adenylylsulfate kinase (EC 2.7.1.25)	PUA_domain	Experimental Subsystems	
RNA-binding C-terminal domain PUA	PUA_domain	Experimental Subsystems	
Glutamate 5-kinase (EC 2.7.2.11)	PUA_domain	Experimental Subsystems	
Translation machinery-associated protein 64, YDR117C homolog	PUA_domain	Experimental Subsystems	
PUA-like domain PF14306	PUA_domain	Experimental Subsystems	
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Cysteine synthase (EC 2.5.1.47)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
O-phosphoseryl-tRNA(Cys) synthetase (EC 6.1.1.27)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
O-phosphoseryl-tRNA:Cysteinyl-tRNA synthase	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
PAPS reductase-like domain	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
PUA domain fused with PAPS reductase-like protein	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
putative 4Fe-4S cluster domain	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU/NifU-like	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) PUA domain	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Iron-sulfur cluster assembly ATPase protein SufC	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufB	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
ATP-utilizing enzyme of the PP-loop superfamily	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Rhodanese-related sulfurtransferase	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Archaeal S-adenosylmethionine synthetase (EC 2.5.1.6)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Hypothetical ATP-binding protein, containing DUF265 domain	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Methionine gamma-lyase (EC 4.4.1.11)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Homoserine O-acetyltransferase (EC 2.3.1.31)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
5-tetrahydromethanopterin:corrinoid iron-sulfur protein methyltransferase	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
L-Cysteine Desulfidase	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Biotin synthase (EC 2.8.1.6)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Homoserine kinase (EC 2.7.1.39)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
TilS-like type 2	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Uncharacterized archaeal domain COG4027	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Cystathionine gamma-synthase (EC 2.5.1.48)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Lipoate synthase	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Cystathionine gamma-lyase (EC 4.4.1.1)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Thiamine biosynthesis protein thiI	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Uncharacterized ATPase (AAA family) associated with cysteine desulfurase	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
O-acetylhomoserine sulfhydrylase (EC 4.2.99.10)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
O-succinylhomoserine sulfhydrylase (EC 4.2.99.9)	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
DUF4007	Experimental_Sulfur_transfer_Archaea	Experimental Subsystems	
Uncharacterized membrane protein Ycf36	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
FIG017608: hypothetical membrane protein, specific for cyanobacteria	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
Ribosomal silencing factor RsfA (former Iojap)	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein of L-Asparaginase type 2-like superfamily	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
ATP-dependent Clp protease adaptor protein ClpS	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
L-asparaginase (EC 3.5.1.1)	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartate ammonia-lyase (EC 4.3.1.1)	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
Isoaspartyl aminopeptidase (EC 3.4.19.5)	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
Atypical L-asparaginase (EC 3.5.1.1), Rhizobium type	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
L-asparagine permease	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
L-asparaginase I, cytoplasmic (EC 3.5.1.1)	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
Mlr4354 like protein	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
L-asparagine operon transcriptional regulator protein (repressor), GntR family	At5g11840_At5g67370	Miscellaneous	Plant-Prokaryote comparative genomics
DNA polymerase III delta subunit (EC 2.7.7.7)	CBSS-1313.3.peg.391	Clustering-based subsystems	
FIG001553: Hydrolase, HAD subfamily IIIA	CBSS-1313.3.peg.391	Clustering-based subsystems	
FIG004454: RNA binding protein	CBSS-1313.3.peg.391	Clustering-based subsystems	
FIG007079: UPF0348 protein family	CBSS-1313.3.peg.391	Clustering-based subsystems	
FIG145533: Methyltransferase (EC 2.1.1.-)	CBSS-1313.3.peg.391	Clustering-based subsystems	
GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit	CBSS-1313.3.peg.391	Clustering-based subsystems	
Hydrolase (HAD superfamily), YqeK	CBSS-1313.3.peg.391	Clustering-based subsystems	
Ribosomal silencing factor RsfA (former Iojap)	CBSS-1313.3.peg.391	Clustering-based subsystems	
Late competence protein ComEA, DNA receptor	CBSS-1313.3.peg.391	Clustering-based subsystems	
Late competence protein ComEB	CBSS-1313.3.peg.391	Clustering-based subsystems	
Late competence protein ComEC, DNA transport	CBSS-1313.3.peg.391	Clustering-based subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	CBSS-1313.3.peg.391	Clustering-based subsystems	
SSU ribosomal protein S20p	CBSS-1313.3.peg.391	Clustering-based subsystems	
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	CBSS-1313.3.peg.391	Clustering-based subsystems	
FIG017608: hypothetical membrane protein, specific for cyanobacteria	CBSS-316279.3.peg.746	Clustering-based subsystems	
Hypothetical protein of L-Asparaginase type 2-like superfamily	CBSS-316279.3.peg.746	Clustering-based subsystems	
Ribosomal silencing factor RsfA (former Iojap)	CBSS-316279.3.peg.746	Clustering-based subsystems	
Uncharacterized membrane protein Ycf36	CBSS-316279.3.peg.746	Clustering-based subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	COG1713	Experimental Subsystems	
Ribosomal silencing factor RsfA (former Iojap)	COG1713	Experimental Subsystems	
Hydrolase (HAD superfamily), YqeK	COG1713	Experimental Subsystems	
Acetyltransferase Iojap substitute?	COG1713	Experimental Subsystems	
HD protein (Iojap analog?)	COG1713	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Glutamate 5-kinase (EC 2.7.2.11)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
RNA-binding C-terminal domain PUA	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Iojap protein	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ribosomal silencing factor RsfA (former Iojap)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ornithine aminotransferase (EC 2.6.1.13)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Proline iminopeptidase (EC 3.4.11.5)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
5-oxoprolinase (EC 3.5.2.9)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
L-Proline/Glycine betaine transporter ProP	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ornithine cyclodeaminase (EC 4.3.1.12)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Proline/sodium symporter PutP (TC 2.A.21.2.1)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Delta 1-pyrroline-5-carboxylate dehydrogenase domain protein	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
ProQ: influences osmotic activation of compatible solute ProP	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
PutR, transcriptional activator of PutA and PutP	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
4-hydroxyproline epimerase (EC 5.1.1.8)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Microbial collagenase, secreted (EC 3.4.24.3)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Predicted regulator PutR for proline utilization, GntR family	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Proline-specific permease proY	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Aspartate-proton symporter	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Transcriptional repressor of PutA and PutP	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-amino-acid oxidase (EC 1.4.3.3)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
putPA fragment of control region	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Aldehyde dehydrogenase (EC 1.2.1.3) in 4-hydroxyproline catabolic gene cluster	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues]	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Proline racemase (EC 5.1.1.4)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Predicted 4-hydroxyproline dipeptidase	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Putative beta-galactosidase in 4-hydroxyproline catabolic gene cluster	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-proline reductase, 23 kDa subunit (EC 1.21.4.1)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-proline reductase, 45 kDa subunit (EC 1.21.4.1)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-proline reductase, 26 kDa subunit (EC 1.21.4.1)	Proline,_4-hydroxyproline_uptake_and_utilization	Amino Acids and Derivatives	Proline and 4-hydroxyproline
L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
Selenide,water dikinase (EC 2.7.9.3)	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
Selenocysteine-specific translation elongation factor	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
Seryl-tRNA synthetase (EC 6.1.1.11)	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
selenocysteine-containing	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
Hypothetical protein Cj1505c	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
Selenophosphate-dependent tRNA 2-selenouridine synthase	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
L-seryl-tRNA(Sec) kinase	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
O-phosphoseryl-tRNA(Sec) selenium transferase	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
Seryl-tRNA synthetase (EC 6.1.1.11), archaeal	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
UPF0425 pyridoxal phosphate-dependent protein MJ0158	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
L-seryl-tRNA(Sec) selenium transferase-related protein	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
SECIS-binding protein 2	Selenocysteine_metabolism	Protein Metabolism	Selenoproteins
DNA topoisomerase I (EC 5.99.1.2)	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase III (EC 5.99.1.2)	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
Similar to C-terminal Zn-finger domain of DNA topoisomerase I	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase I, eukaryotic-type (EC 5.99.1.2)	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase III, Burkholderia type (EC 5.99.1.2)	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase III, TraE-type (EC 5.99.1.2)	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase III, Bacillus plasimid type (EC 5.99.1.2)	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase III, Bacteroidales-type (EC 5.99.1.2)	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase III domain	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
Plasmid associated TOPRIM domain protein	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
DNA topoisomerase V	DNA_topoisomerases,_Type_I,_ATP-independent	DNA Metabolism	DNA replication
COG1399 protein, clustered with ribosomal protein L32p	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Ribonuclease III (EC 3.1.26.3)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
GTP-binding protein Era	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
GTP-binding protein EngA	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
FIG146278: Maf/YceF/YhdE family protein	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Ribonuclease E (EC 3.1.26.12)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
FIG004453: protein YceG like	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Thymidylate kinase (EC 2.7.4.9)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Aminodeoxychorismate lyase (EC 4.1.3.38)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
RNase E 5[prime] UTR element	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
LSU ribosomal protein L32p	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Phosphate:acyl-ACP acyltransferase PlsX	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Acyl carrier protein	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
SraB RNA	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
Chromosome partition protein smc	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
FIG007079: UPF0348 protein family	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
COG1399 protein in cluster with ribosomal protein L32p, Firmicutes subfamily	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
COG1399 protein in cluster with ribosomal protein L32p, Bacteroidetes/Chlorobi subfamily	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
COG1399 protein in cluster with ribosomal protein L32p, Francisella subfamily	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
COG1399 protein in cluster with ribosomal protein L32p, putative divergent	COG1399	Clustering-based subsystems	Fatty acid metabolic cluster
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	Mycobacterium_virulence_operon_involved_in_fatty_acids_biosynthesis	Virulence	
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	Mycobacterium_virulence_operon_involved_in_fatty_acids_biosynthesis	Virulence	
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Protein_Carbonylation	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	Protein_Carbonylation	Experimental Subsystems	
ATP synthase beta chain (EC 3.6.3.14)	Protein_Carbonylation	Experimental Subsystems	
ClpB protein	Protein_Carbonylation	Experimental Subsystems	
Chaperone protein DnaK	Protein_Carbonylation	Experimental Subsystems	
Enolase (EC 4.2.1.11)	Protein_Carbonylation	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Protein_Carbonylation	Experimental Subsystems	
Translation elongation factor G	Protein_Carbonylation	Experimental Subsystems	
Heat shock protein 60 family chaperone GroEL	Protein_Carbonylation	Experimental Subsystems	
Chaperone protein HtpG	Protein_Carbonylation	Experimental Subsystems	
Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor	Protein_Carbonylation	Experimental Subsystems	
Leucyl-tRNA synthetase (EC 6.1.1.4)	Protein_Carbonylation	Experimental Subsystems	
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	Protein_Carbonylation	Experimental Subsystems	
Adenylosuccinate synthetase (EC 6.3.4.4)	Protein_Carbonylation	Experimental Subsystems	
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	Protein_Carbonylation	Experimental Subsystems	
SSU ribosomal protein S1p	Protein_Carbonylation	Experimental Subsystems	
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Protein_Carbonylation	Experimental Subsystems	
Translation elongation factor Ts	Protein_Carbonylation	Experimental Subsystems	
Translation elongation factor Tu	Protein_Carbonylation	Experimental Subsystems	
Outer membrane protein assembly factor YaeT precursor	Protein_Carbonylation	Experimental Subsystems	
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Protein_Carbonylation	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Protein_Carbonylation	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	Protein_Carbonylation	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Protein_Carbonylation	Experimental Subsystems	
Glutamine synthetase type I (EC 6.3.1.2)	Protein_Carbonylation	Experimental Subsystems	
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Protein_Carbonylation	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	Protein_Carbonylation	Experimental Subsystems	
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Protein_Carbonylation	Experimental Subsystems	
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Protein_Carbonylation	Experimental Subsystems	
Malate dehydrogenase (EC 1.1.1.37)	Protein_Carbonylation	Experimental Subsystems	
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Protein_Carbonylation	Experimental Subsystems	
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Protein_Carbonylation	Experimental Subsystems	
Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)	Protein_Carbonylation	Experimental Subsystems	
Pyruvate kinase (EC 2.7.1.40)	Protein_Carbonylation	Experimental Subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Protein_Carbonylation	Experimental Subsystems	
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Protein_Carbonylation	Experimental Subsystems	
Zinc ABC transporter, periplasmic-binding protein ZnuA	Protein_Carbonylation	Experimental Subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	Protein_Carbonylation	Experimental Subsystems	
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	Protein_Carbonylation	Experimental Subsystems	
ATP-dependent protease La (EC 3.4.21.53) Type I	Protein_Carbonylation	Experimental Subsystems	
RND efflux system, membrane fusion protein CmeA	Protein_Carbonylation	Experimental Subsystems	
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Protein_Carbonylation	Experimental Subsystems	
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Protein_Carbonylation	Experimental Subsystems	
Ferrichrome-iron receptor	Protein_Carbonylation	Experimental Subsystems	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Protein_Carbonylation	Experimental Subsystems	
Transcription termination factor Rho	Protein_Carbonylation	Experimental Subsystems	
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	Protein_Carbonylation	Experimental Subsystems	
Uridine phosphorylase (EC 2.4.2.3)	Protein_Carbonylation	Experimental Subsystems	
LSU ribosomal protein L1p (L10Ae)	Protein_Carbonylation	Experimental Subsystems	
Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)	Protein_Carbonylation	Experimental Subsystems	
Inorganic pyrophosphatase (EC 3.6.1.1)	Protein_Carbonylation	Experimental Subsystems	
Manganese superoxide dismutase (EC 1.15.1.1)	Protein_Carbonylation	Experimental Subsystems	
Uracil phosphoribosyltransferase (EC 2.4.2.9)	Protein_Carbonylation	Experimental Subsystems	
Long-chain fatty acid transport protein	Protein_Carbonylation	Experimental Subsystems	
Translation initiation factor 2	Protein_Carbonylation	Experimental Subsystems	
Transcription termination protein NusA	Protein_Carbonylation	Experimental Subsystems	
LSU ribosomal protein L3p (L3e)	Protein_Carbonylation	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	Protein_Carbonylation	Experimental Subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Protein_Carbonylation	Experimental Subsystems	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Protein_Carbonylation	Experimental Subsystems	
Ferric hydroxamate outer membrane receptor FhuA	Protein_Carbonylation	Experimental Subsystems	
Nucleoside-specific channel-forming protein Tsx precursor	Protein_Carbonylation	Experimental Subsystems	
Pectinesterase (EC 3.1.1.11)	Protein_Carbonylation	Experimental Subsystems	
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	Protein_Carbonylation	Experimental Subsystems	
Glutamate decarboxylase (EC 4.1.1.15)	Protein_Carbonylation	Experimental Subsystems	
Colicin I receptor precursor	Protein_Carbonylation	Experimental Subsystems	
4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Protein_Carbonylation	Experimental Subsystems	
Antigen 43 precursor	Protein_Carbonylation	Experimental Subsystems	
outer membrane protein a OmpA	Protein_Carbonylation	Experimental Subsystems	
ACETYL/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD6	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Acyl carrier protein	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III FABH (BETA-KETOACYL-ACP SYNTHASE III) (KAS III)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 1 CMAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 1)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
POSSIBLE MYCOLIC ACID SYNTHASE UMAA1	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
MYCOLIC ACID SYNTHASE (PcaA/UmaA2) (CYCLOPROPANE SYNTHASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Probable acyl-[acyl-carrier protein] desaturase DESA1 (Acyl-[ACP] desaturase) (Stearoyl-ACP desaturase) (Protein DES) (EC 1.14.19.2)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
SECRETED ANTIGEN 85-A FBPA (MYCOLYL TRANSFERASE 85A) (FIBRONECTIN-BINDING PROTEIN A) (ANTIGEN 85 COMPLEX A)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
SECRETED ANTIGEN 85-B FBPB (85B) (ANTIGEN 85 COMPLEX B) (MYCOLYL TRANSFERASE 85B) (FIBRONECTIN-BINDING PROTEIN B) (EXTRACELLULAR ALPHA-ANTIGEN)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
acyl-CoA synthetase	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
PROBABLE DAUNORUBICIN-DIM-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER DRRB	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
PROBABLE DAUNORUBICIN-DIM-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER DRRC	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 2 CMAA2 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 2) (MYCOLIC ACID TRANS-CYCLOPROPANE SYNTHETASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
METHOXY MYCOLIC ACID SYNTHASE 1 MMAA1 (METHYL MYCOLIC ACID SYNTHASE 1) (MMA1) (HYDROXY MYCOLIC ACID SYNTHASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
METHOXY MYCOLIC ACID SYNTHASE 2 MMAA2 (METHYL MYCOLIC ACID SYNTHASE 2) (MMA2) (HYDROXY MYCOLIC ACID SYNTHASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
PROBABLE MULTIFUNCTIONAL MYCOCEROSIC ACID SYNTHASE MEMBRANE-ASSOCIATED MAS	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL7	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
FATTY-ACID-CoA LIGASE FADD26 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE)	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Phenolpthiocerol synthesis polyketide synthase ppsA	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Phenolpthiocerol synthesis polyketide synthase ppsB	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSC	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSD	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSE	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
POSSIBLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA5	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
PROBABLE DAUNORUBICIN-DIM-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER DRRA	mycolic_acid_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Glutamyl-tRNA synthetase (EC 6.1.1.17)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutaminyl-tRNA synthetase (EC 6.1.1.18)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) amidotransferase asparaginase subunit (EC 6.3.5.7)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) amidotransferase transferase subunit (EC 6.3.5.7)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Protein of unknown function DUF208	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) amidotransferase subunit F (EC 6.3.5.7)	tRNA_aminoacylation,_Glu_and_Gln	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA synthetase (EC 6.1.1.12)	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Asparaginyl-tRNA synthetase (EC 6.1.1.22), mitochondrial	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Asparaginyl-tRNA synthetase (EC 6.1.1.22), chloroplast	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6)	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6)	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Glutaminyl-tRNA synthetase (EC 6.1.1.18)	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA synthetase (EC 6.1.1.12), mitochondrial	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6)	tRNA_aminoacylation,_Asp_and_Asn	Protein Metabolism	Protein biosynthesis
DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase gamma subunit (EC 2.7.7.6)	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase delta (= beta'') subunit (EC 2.7.7.6)	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase delta subunit (EC 2.7.7.6)	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase alpha subunit domain	RNA_polymerase_bacterial	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit B (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit D (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit E' (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit F (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit G (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit H (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit K (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit L (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit N (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit P (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
Transcription factor S	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit E''	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit B'' (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit Rpo13 (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
DNA-directed RNA polymerase subunit A (EC 2.7.7.6)	RNA_polymerase_archaeal	RNA Metabolism	Transcription
Capsular polysaccharide transcription antitermination protein UpgY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein, UpxY family	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Transcription antitermination protein NusG	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein UpaY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein UpbY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein UpcY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein UpdY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein UpeY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein UpfY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Capsular polysaccharide transcription antitermination protein UphY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Transcription antitermination protein UpdY	Bacteroides_capsular_polysaccharide_transcription_antitermination_proteins	Cell Wall and Capsule	Gram-Negative cell wall components
Biotin synthase (EC 2.8.1.6)	5'-Deoxyadenosine_disposal	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Competence protein F homolog, phosphoribosyltransferase domain	5'-Deoxyadenosine_disposal	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	5'-Deoxyadenosine_disposal	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
CRISPR-associated protein Cas1	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
CRISPR-associated protein, Cse4 family	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
CRISPR-associated protein, Cas5e family	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
CRISPR-associated protein, Cas2	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
CRISPR-associated protein, Cse3 family	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
CRISPR-associated protein, Cse1 family	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
CRISPR-associated helicase Cas3, protein	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
Alkaline phosphatase isozyme conversion protein precursor (EC 3.4.11.-)	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
putative CRISPR associated hypothetical protein	CBSS-216592.1.peg.3534	Clustering-based subsystems	CRISPRs and associated hypotheticals
CRISPR-associated RAMP Cmr2	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP Cmr3	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP Cmr4	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP Cmr5	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP Cmr6	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP Cmr1	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
DUF324 domain containing Cmr2-like protein	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated protein Csx11	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
FIG054491: hypothetical protein	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
DUF324 domain containing Cmr6-like protein	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated protein Cas02710	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated protein TM1812	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated protein, Csx3 family	CRISP_Cmr_Cluster	DNA Metabolism	CRISPs
CRISPR-associated protein, Csm1 family	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated protein, Csm2 family	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP Csm3	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP protein, Csm4 family	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated protein, Csm5 family	CRISPR-associated_cluster	DNA Metabolism	CRISPs
DUF324 domain-containing protein	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP, Csx10 family	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated protein, Cas6	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated protein Csm6	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated protein, Csx3 family	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated protein Csx1	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated RAMP, TM1809 family	CRISPR-associated_cluster	DNA Metabolism	CRISPs
CRISPR-associated protein Cas1	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Cas2	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated helicase Cas3	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated RecB family exonuclease Cas4a	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated RecB family exonuclease Cas4	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csd1 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csd2/Csh2 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cas5d family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csn1 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated negative autoregulator	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Cas5	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Cas3''	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csn2 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cse1 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cse2 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cse3 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cse4 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cas5e family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csc1	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csc2	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csm1 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csm2 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated RAMP Csm3	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated RAMP protein, Csm4 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csm5 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated RAMP, Csx10 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein TM1812	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cas5h family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Cas5t family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csx1	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csa2 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csa5 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csf1	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csf2	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csh1 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Cas7	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, Csx3 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csx15	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein CsaX	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csx16	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csb1	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein Csb2	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated protein, CT1972 family	CRISPRs	DNA Metabolism	CRISPs
CRISPR-associated helicase Cas3, protein	CRISPRs	DNA Metabolism	CRISPs
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(S)-3-O-geranylgeranylglyceryl phosphate synthase	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Digeranylgeranylglycerophospholipid reductase	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dimethylallyltransferase (EC 2.5.1.1)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl phosphate kinase	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Mevalonate kinase (EC 2.7.1.36)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Diphosphomevalonate decarboxylase (EC 4.1.1.33)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Farnesylgeranyl pyrophosphate synthetase	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hexaprenyl pyrophosphate synthetase	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phosphomevalonate kinase (EC 2.7.4.2)	Archaeal_lipids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)	Isoprenoid_Biosynthesis:_Interconversions	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	Isoprenoid_Biosynthesis:_Interconversions	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	Isoprenoid_Biosynthesis:_Interconversions	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Octaprenyl diphosphate synthase (EC 2.5.1.90)	Proteorhodopsin	Photosynthesis	
Phytoene dehydrogenase (EC 1.14.99.-)	Proteorhodopsin	Photosynthesis	
Phytoene synthase (EC 2.5.1.32)	Proteorhodopsin	Photosynthesis	
Predictet Brp-like protein Blh	Proteorhodopsin	Photosynthesis	
Proteorhodopsin	Proteorhodopsin	Photosynthesis	
Spheroidene monooxygenase	Proteorhodopsin	Photosynthesis	
Lycopene beta cyclase (EC 1.14.-.-)	Proteorhodopsin	Photosynthesis	
Beta-carotene ketolase (EC 1.14.-.-)	Proteorhodopsin	Photosynthesis	
Lycopene cyclase, CruA type	Proteorhodopsin	Photosynthesis	
Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	Isoprenoid_scratch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	Isoprenoid_scratch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Tetraprenyl-beta-curcumene synthase (EC 4.2.3.130)	Isoprenoid_scratch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Transport ATP-binding protein CydC	B.subtilis_model	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	B.subtilis_model	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	B.subtilis_model	Experimental Subsystems	
Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit	B.subtilis_model	Experimental Subsystems	
Menaquinone-cytochrome c reductase, cytochrome B subunit	B.subtilis_model	Experimental Subsystems	
Menaquinone-cytochrome C reductase iron-sulfur subunit	B.subtilis_model	Experimental Subsystems	
Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	B.subtilis_model	Experimental Subsystems	
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	B.subtilis_model	Experimental Subsystems	
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	B.subtilis_model	Experimental Subsystems	
O-succinylbenzoate synthase (EC 4.2.1.113)	B.subtilis_model	Experimental Subsystems	
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	B.subtilis_model	Experimental Subsystems	
Naphthoate synthase (EC 4.1.3.36)	B.subtilis_model	Experimental Subsystems	
1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)	B.subtilis_model	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	B.subtilis_model	Experimental Subsystems	
Transport ATP-binding protein CydD	B.subtilis_model	Experimental Subsystems	
2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG (EC 2.1.1.163)	B.subtilis_model	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	E.coli_model	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	E.coli_model	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	E.coli_model	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	E.coli_model	Experimental Subsystems	
Succinate dehydrogenase cytochrome b-556 subunit	E.coli_model	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	E.coli_model	Experimental Subsystems	
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	E.coli_model	Experimental Subsystems	
Succinate dehydrogenase hydrophobic membrane anchor protein	E.coli_model	Experimental Subsystems	
Fumarate reductase subunit C	E.coli_model	Experimental Subsystems	
Fumarate reductase subunit D	E.coli_model	Experimental Subsystems	
Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	E.coli_model	Experimental Subsystems	
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	E.coli_model	Experimental Subsystems	
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	E.coli_model	Experimental Subsystems	
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	E.coli_model	Experimental Subsystems	
Naphthoate synthase (EC 4.1.3.36)	E.coli_model	Experimental Subsystems	
1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)	E.coli_model	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	E.coli_model	Experimental Subsystems	
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	E.coli_model	Experimental Subsystems	
Chorismate--pyruvate lyase (EC 4.1.3.40)	E.coli_model	Experimental Subsystems	
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	E.coli_model	Experimental Subsystems	
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	E.coli_model	Experimental Subsystems	
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	E.coli_model	Experimental Subsystems	
Ubiquinone biosynthesis monooxygenase UbiB	E.coli_model	Experimental Subsystems	
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	E.coli_model	Experimental Subsystems	
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	E.coli_model	Experimental Subsystems	
O-succinylbenzoate synthase (EC 4.2.1.113)	E.coli_model	Experimental Subsystems	
2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG (EC 2.1.1.163)	E.coli_model	Experimental Subsystems	
3-demethylubiquinol 3-O-methyltransferase (EC 2.1.1.64)	E.coli_model	Experimental Subsystems	
Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoate synthase (EC 4.2.1.113)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Naphthoate synthase (EC 4.1.3.36)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Phylloquinone-specific isochorismate synthase (EC 5.4.4.2)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG of phylloquinone biosynthesis (EC 2.1.1.-)	Menaquinone_and_Phylloquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Gene SCO4494, often clustered with other genes in menaquinone via futalosine pathway	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via 6-amino-6-deoxyfutalosine step 1	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via 6-amino-6-deoxyfutalosine step 2	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 3	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 4	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine polyprenyltransferase (MenA homolog)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
UbiD family decarboxylase associated with menaquinone via futalosine	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
UbiX family decarboxylase associated with menaquinone via futalosine	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
5'-methylthioadenosine phosphorylase (EC 2.4.2.28)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 1	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 2	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 4, possible alternative	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
SAM-dependent methyltransferase DSY4148 (UbiE paralog)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
SAM-dependent methyltransferase YafE (UbiE paralog)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Adenosine deaminase (EC 3.5.4.4)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Aminodeoxyfutalosine deaminase	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-6-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Benzoate-CoA ligase (EC 6.2.1.25)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadE (EC 1.3.99.15)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadD (EC 1.3.99.15)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadF (EC 1.3.99.15)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadG (EC 1.3.99.15)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Cyclohex-1-ene-1-carboxyl-CoA hydratase (EC 4.2.1.17)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
2-ketocyclohexanecarboxyl-CoA hydrolase	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Glutaryl-CoA dehydrogenase (EC 1.3.99.7)	Anaerobic_benzoate_metabolism	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Propanediol utilization transcriptional activator	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol diffusion facilitator	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization polyhedral body protein PduA	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization polyhedral body protein PduB	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol dehydratase large subunit (EC 4.2.1.28)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol dehydratase medium subunit (EC 4.2.1.28)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol dehydratase small subunit (EC 4.2.1.28)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol dehydratase reactivation factor large subunit	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol dehydratase reactivation factor small subunit	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization polyhedral body protein PduJ	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization polyhedral body protein PduK	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization protein PduL	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization protein PduM	Propanediol_utilization	Carbohydrates	Sugar alcohols
CoA-acylating propionaldehyde dehydrogenase	Propanediol_utilization	Carbohydrates	Sugar alcohols
Putative iron-containing NADPH-dependent propanol dehydrogenase	Propanediol_utilization	Carbohydrates	Sugar alcohols
Cob(III)alamin reductase	Propanediol_utilization	Carbohydrates	Sugar alcohols
Cob(II)alamin reductase	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization polyhedral body protein PduT	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization polyhedral body protein PduU	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization protein PduV	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propionate kinase, propanediol utilization (EC 2.7.2.1)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Threonine kinase in B12 biosynthesis	Propanediol_utilization	Carbohydrates	Sugar alcohols
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), ethanolamine utilization	Propanediol_utilization	Carbohydrates	Sugar alcohols
Phosphate acetyltransferase (EC 2.3.1.8)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Propanediol utilization polyhedral body protein PduN	Propanediol_utilization	Carbohydrates	Sugar alcohols
Glycerol dehydratase large subunit (EC 4.2.1.30)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Glycerol dehydratase medium subunit (EC 4.2.1.30)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Glycerol dehydratase small subunit (EC 4.2.1.30)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Hypothetical protein PA1329	Propanediol_utilization	Carbohydrates	Sugar alcohols
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	Propanediol_utilization	Carbohydrates	Sugar alcohols
Aminodeoxychorismate lyase (EC 4.1.3.38)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folylpolyglutamate synthase (EC 6.3.2.17)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate diphosphatase (EC 3.6.1.n4)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate reductase (EC 1.5.1.3)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Serine hydroxymethyltransferase (EC 2.1.2.1)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Gamma-glutamyl hydrolase (EC 3.4.19.9)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate synthase (EC 6.3.2.12)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glycine cleavage system H protein	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidylate synthase (EC 2.1.1.45)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate carrier, cyanobacterial type	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Plastid folate carrier	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
UDP-glucose:p-aminobenzoate glucosyltransferase	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Vacuolar folate monoglutamate carrier	Folate-Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE16	Mycobacterial_FadE16_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG00014764: hypothetical protein	Mycobacterial_FadE16_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	Mycobacterial_FadE25_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	Mycobacterial_FadE25_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE25	Mycobacterial_FadE25_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)	Mycobacterial_FadE26_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE26	Mycobacterial_FadE26_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE27	Mycobacterial_FadE26_protein_cluster	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD1	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD3	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD6	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD8	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD12	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-methylmercaptopropionyl-CoA ligase (DmdB)	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD15	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD16	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD19	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD21	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD32	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD33	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD36	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD9	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD17	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD31	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD10	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD11	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD13	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD18	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD23	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD24	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD28	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD29	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34	Mycobacterial_FadD_proteins_(fatty_acid_CoA-_and_AMP-_ligases)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Membrane-associated zinc metalloprotease	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
GCN5-related N-acetyltransferase, FIGfam019367	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
Undecaprenyl diphosphate synthase (EC 2.5.1.31)	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
Penicillin-binding protein 2 (PBP-2)	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
penicillin-binding protein, putative	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
Penicillin-binding protein 2B	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
Stage V sporulation protein D (Sporulation-specific penicillin-binding protein)	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
Penicillin-binding protein 3	CBSS-83331.1.peg.3039	Clustering-based subsystems	Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dimethylallyltransferase (EC 2.5.1.1)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Diphosphomevalonate decarboxylase (EC 4.1.1.33)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Mevalonate kinase (EC 2.7.1.36)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phosphomevalonate kinase (EC 2.7.4.2)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Undecaprenyl diphosphate synthase (EC 2.5.1.31)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Candidate gene for the hypothesized phosphomevalonate decarboxylase	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl phosphate kinase	Isoprenoid_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-aminoethylphosphonate uptake and metabolism regulator	Phosphonate_metabolism	Phosphorus Metabolism	
2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	Phosphonate_metabolism	Phosphorus Metabolism	
Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)	Phosphonate_metabolism	Phosphorus Metabolism	
Phosphonate uptake and metabolism regulator, LysR-family	Phosphonate_metabolism	Phosphorus Metabolism	
2-aminoethylphosphonate ABC transporter periplasmic binding component (TC 3.A.1.9.1)	Phosphonate_metabolism	Phosphorus Metabolism	
2-aminoethylphosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	Phosphonate_metabolism	Phosphorus Metabolism	
2-aminoethylphosphonate ABC transporter permease protein I (TC 3.A.1.9.1)	Phosphonate_metabolism	Phosphorus Metabolism	
2-aminoethylphosphonate ABC transporter permease protein II (TC 3.A.1.9.1)	Phosphonate_metabolism	Phosphorus Metabolism	
Phosphonoacetate hydrolase (EC 3.11.1.2)	Phosphonate_metabolism	Phosphorus Metabolism	
Glycolipoprotein LprG, antigen P27 modulating immune response against mycobacteria in favour of bacterial persistence	Mycobacterial_multidrug_resistance_efflux_operon	Virulence	Resistance to antibiotics and toxic compounds
Multidrug efflux pump P55	Mycobacterial_multidrug_resistance_efflux_operon	Virulence	Resistance to antibiotics and toxic compounds
Dissimilatory sulfite reductase, alpha subunit	Lux_sulfur_oxidation	Experimental Subsystems	
Dissimilatory sulfite reductase, alpha subunit (EC 1.8.99.3)	Lux_sulfur_oxidation	Experimental Subsystems	
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits	Lux_sulfur_oxidation	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Arsenate reductase (EC 1.20.4.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Ferric reductase (1.6.99.14)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Anaerobic sulfite reductase subunit A	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Anaerobic sulfite reductase subunit B	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Anaerobic sulfite reductase subunit C (EC 1.8.1.-)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Anaerobic dehydrogenases, typically selenocysteine-containing	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
CoB--CoM-reducing hydrogenase (Cys) delta subunit	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Dissimilatory sulfite reductase, alpha subunit (EC 1.8.99.3)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Dissimilatory sulfite reductase, beta subunit (EC 1.8.99.3)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Sulfite reductase, dissimilatory-type gamma subunit (EC 1.8.99.3)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
heterodisulfide reductase, subunit E, putative	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
polysulfide reductase, subunit A	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
polysulfide reductase, subunit B	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
polysulfide reductase, subunit C	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Heterodisulfide reductase, cytochrome reductase subunit	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Polysulfide reductase, subunit A, putative	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Polysulfide reductase, subunit B, putative	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Polysulfide reductase, subunit C, putative	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
heterodisulfide reductase, iron-sulfur binding subunit, putative	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Fe-S-cluster-containing hydrogenase components 1	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Ferredoxin reductase	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
F420-dependent sulfite reductase	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D (EC 1.8.98.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase 2 subunit E (EC 1.8.98.1)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Coenzyme F420-dependent oxidoreductase	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Thiosulfate reductase electron transport protein phsB	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Thiosulfate reductase precursor (EC 1.-.-.-)	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Thiosulfate reductase cytochrome B subunit	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Heterodisulfide reductase, subunit A	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Uncharacterized component of anaerobic dehydrogenases	Anaerobic_respiratory_reductases	Respiration	Electron accepting reactions
Sulfite reduction-associated complex DsrMKJOP protein DsrM (= HmeC)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Sulfite reduction-associated complex DsrMKJOP protein DsrK (=HmeD)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Sulfite reduction-associated complex DsrMKJOP multiheme protein DsrJ (=HmeF)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Sulfite reduction-associated complex DsrMKJOP iron-sulfur protein DsrO (=HmeA)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Sulfite reduction-associated complex DsrMKJOP protein DsrP (= HmeB)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Protein similar to glutamate synthase [NADPH] small chain, clustered with sulfite reductase	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Dissimilatory sulfite reductase, alpha subunit (EC 1.8.99.3)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Dissimilatory sulfite reductase, beta subunit (EC 1.8.99.3)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Sulfite reductase, dissimilatory-type gamma subunit (EC 1.8.99.3)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-)	Sulfate_reduction-associated_complexes	Sulfur Metabolism	
Mycobacterial persistence regulator MprA (Two component response transcriptional regulatory protein)	Mycobacterial_signal_transduction_system_required_for_persistent_infections	Virulence	Resistance to antibiotics and toxic compounds
Signal transduction histidine-protein kinase/phosphatase MprB (EC 2.7.13.3) (EC 3.1.3.-)	Mycobacterial_signal_transduction_system_required_for_persistent_infections	Virulence	Resistance to antibiotics and toxic compounds
Possible membrane protein RV0347	Mycobacterial_transcriptional_regulator_of_hypoxia_and_virulence_MosR	Virulence	Resistance to antibiotics and toxic compounds
Transcriptional regulator of mycobacterial operons of survival, MosR	Mycobacterial_transcriptional_regulator_of_hypoxia_and_virulence_MosR	Virulence	Resistance to antibiotics and toxic compounds
Hypothetical protein Rv0349	Mycobacterial_transcriptional_regulator_of_hypoxia_and_virulence_MosR	Virulence	Resistance to antibiotics and toxic compounds
Glucose-6-phosphate isomerase (EC 5.3.1.9)	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Zyxin	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Ubiquitin-like 1-activating enzyme E1B (EC 6.3.2.-)	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Programmed cell death 2-like	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
6-phosphofructokinase (EC 2.7.1.11)	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Alpha-1 type II collagen	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Sentrin/SUMO-specific protease 1	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Ankyrin repeat and SOCS box containing protein 8	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Autoimmune regulator	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
transient receptor potential cation channel, subfamily M, member 8	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Protein C21orf2	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Inducible T-cell co-stimulator ligand	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
DNA (cytosine-5) -methyltransferase 3-like	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
LSM14 protein homolog A	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
ES1 protein homolog, mitochondrial precursor	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Presequence protease, mitochondrial precursor (EC 3.4.24.-)	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Hanp1 protein	CR_clusters_Euk_7_GlucoseP_isomerase	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
HTH-type transcriptional regulator IlvY	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Valine--pyruvate aminotransferase (EC 2.6.1.66)	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7)	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine racemase, catabolic (EC 5.1.1.1)	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine transaminase (EC 2.6.1.2)	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine racemase, biosynthetic (EC 5.1.1.1)	Alanine_biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
MCE-family lipoprotein LprM (MCE-family lipoprotein Mce3E)	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3F	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3D	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3A	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3C	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3B	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
Conserved hypothetical integral membrane protein YrbE3B	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
Conserved hypothetical integral membrane protein YrbE3A	Mycobacterial_MCE_virulence_operon_involved_in_cell_invasion_(locus_MCE3)		
MCE-family lipoprotein LprM (MCE-family lipoprotein Mce3E)	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3F	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3D	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3A	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3C	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
MCE-family protein Mce3B	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
Conserved hypothetical integral membrane protein YrbE3B	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
Conserved hypothetical integral membrane protein YrbE3A	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion_(locus_MCE3)		
Cys-tRNA(Pro) deacylase YbaK	ybaK	Experimental Subsystems	
Erythritol kinase EryA (EC 2.7.1.27)	Erythritol_utilization	Carbohydrates	Sugar alcohols
Erythritol phosphate dehydrogenase EryB	Erythritol_utilization	Carbohydrates	Sugar alcohols
D-erythrulose 4-phosphate dehydrogenase EryC (EC 1.1.1.-)	Erythritol_utilization	Carbohydrates	Sugar alcohols
Erythritol transcriptional regulator EryD	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 2, substrate-binding component	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 2, permease component	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 2, ATP-binding component	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 2, hypothetical lipoprotein	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 1, substrate-binding component	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 1, permease component 1	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 1, permease component 2	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 1, ATP-binding component 1	Erythritol_utilization	Carbohydrates	Sugar alcohols
Predicted erythritol ABC transporter 1, ATP-binding component 2	Erythritol_utilization	Carbohydrates	Sugar alcohols
Alcohol dehydrogenase (EC 1.1.1.1)	Alcohol_Dehydrogenases	Experimental Subsystems	
Aldehyde dehydrogenase (EC 1.2.1.3)	Alcohol_Dehydrogenases	Experimental Subsystems	
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)	Alcohol_Dehydrogenases	Experimental Subsystems	
Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Alcohol_Dehydrogenases	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Alcohol_Dehydrogenases	Experimental Subsystems	
Fe-S protein, homolog of lactate dehydrogenase SO1521	Alcohol_Dehydrogenases	Experimental Subsystems	
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)	Alcohol_Dehydrogenases	Experimental Subsystems	
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)	Alcohol_Dehydrogenases	Experimental Subsystems	
D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2)	Alcohol_Dehydrogenases	Experimental Subsystems	
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)	Alcohol_Dehydrogenases	Experimental Subsystems	
Alcohol dehydrogenase (EC 1.1.1.1)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Aldehyde dehydrogenase (EC 1.2.1.3)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Fe-S protein, homolog of lactate dehydrogenase SO1521	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
Adhfe1 homolog	Alcohol_Dehydrogenases_comparison	Experimental Subsystems	
YgiN protei involved in menadione metabolism	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Topoisomerase IV subunit B (EC 5.99.1.-)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Modulator of drug activity B	CBSS-216592.1.peg.3937	Clustering-based subsystems	
3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Topoisomerase IV subunit A (EC 5.99.1.-)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Sensory histidine kinase QseC	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Protein ygiW precursor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Two-component system response regulator QseB	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative esterase, FIGfam005057	CBSS-216592.1.peg.3937	Clustering-based subsystems	
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Type I secretion outer membrane protein, TolC precursor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative cell division protein precursor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Zinc transporter zupT	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Iron(III) dicitrate transport system permease protein fecD (TC 3.A.1.14.1)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
probable lipoprotein	CBSS-216592.1.peg.3937	Clustering-based subsystems	
tRNA pseudouridine synthase B (EC 4.2.1.70)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
RND efflux system, outer membrane lipoprotein CmeC	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Ferric enterobactin transport system permease protein FepD (TC 3.A.1.14.2)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative esterase	CBSS-216592.1.peg.3937	Clustering-based subsystems	
D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Transcriptional regulatory protein qseB	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Inner membrane protein ygiZ	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Uncharacterized protein ygiV	CBSS-216592.1.peg.3937	Clustering-based subsystems	
UPF0441 protein ygiB	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative binding protein ygiS precursor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Transport of small molecules: Cations	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Transcriptional regulator, Cro/CI family	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative uncharacterized protein ygiA	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Uncharacterized protein ygiD	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Uncharacterized protein yqiC	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Uncharacterized outer membrane usher protein yqiG precursor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Uncharacterized protein yqhG precursor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Uncharacterized fimbrial-like protein ygiL precursor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
UPF0313 protein ygiQ	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative iron compound receptor	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative iron compound-binding protein of ABC transporter family	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative iron compound permease protein of ABC transporter family	CBSS-216592.1.peg.3937	Clustering-based subsystems	
putative permease of ferrichrome ABC transporter	CBSS-216592.1.peg.3937	Clustering-based subsystems	
hypothetical phosphosugar isomerases	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Probable Fe-S oxidoreductase family 2	CBSS-216592.1.peg.3937	Clustering-based subsystems	
TRAP-type C4-dicarboxylate transport system, large permease component	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Hypothetical fimbrial chaperone yqiH	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Inner membrane protein ygi cluster	CBSS-216592.1.peg.3937	Clustering-based subsystems	
putative peptide transport system secreted peptide-binding protein	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Putative glutathionylspermidine synthase	CBSS-216592.1.peg.3937	Clustering-based subsystems	
integral membrane sensor signal transduction histidine kinase	CBSS-216592.1.peg.3937	Clustering-based subsystems	
Sensor protein qseC (EC 2.7.3.-)	CBSS-216592.1.peg.3937	Clustering-based subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	COG0277	Miscellaneous	Plant-Prokaryote comparative genomics
Fumarylacetoacetate hydrolase family protein	COG0277	Miscellaneous	Plant-Prokaryote comparative genomics
D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2)	COG0277	Miscellaneous	Plant-Prokaryote comparative genomics
Aconitate hydratase (EC 4.2.1.3)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase 2 (EC 4.2.1.3)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Citrate synthase (si) (EC 2.3.3.1)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Isocitrate lyase (EC 4.1.3.1)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Malate dehydrogenase (EC 1.1.1.37)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Malate synthase (EC 2.3.3.9)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Malate synthase G (EC 2.3.3.9)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
(R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Citrate synthase, mitochondrial precursor (EC 2.3.3.1)	Glyoxylate_bypass	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase (EC 4.2.1.3)	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
Citrate synthase (si) (EC 2.3.3.1)	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
hypothetical protein that often co-occurs with aconitase	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
ATP-citrate (pro-S-)-lyase, subunit 2 (EC 2.3.3.8)	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
Regulatory protein, MerR:Citrate synthase	oxaloacetate_to_2-oxoglutarate_module	Experimental Subsystems	
FUPA24 P-type ATPase	Family_24_FUPA24_P-type_ATPase		
hypothetical protein Rv0424c	Family_24_FUPA24_P-type_ATPase		
Exodeoxyribonuclease III (EC 3.1.11.2)	Family_24_FUPA24_P-type_ATPase		
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Family_24_FUPA24_P-type_ATPase		
Histone acetyltransferase HPA2 and related acetyltransferases	Family_24_FUPA24_P-type_ATPase		
Peptide deformylase (EC 3.5.1.88)	Family_24_FUPA24_P-type_ATPase		
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Family_24_FUPA24_P-type_ATPase		
putative Fis family transcriptional regulator	Family_24_FUPA24_P-type_ATPase		
Tuberculin related peptide	Family_24_FUPA24_P-type_ATPase		
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	Family_24_FUPA24_P-type_ATPase		
hypothetical protein Rv0108c	Family_24_FUPA24_P-type_ATPase		
Esterase/lipase/thioesterase family active site	Family_24_FUPA24_P-type_ATPase		
carboxylate-amine ligase	Family_24_FUPA24_P-type_ATPase		
Uncharacterized protein, similar to the N-terminal domain of Lon protease	Family_24_FUPA24_P-type_ATPase		
Pantoate--beta-alanine ligase (EC 6.3.2.1)	Family_24_FUPA24_P-type_ATPase		
PE-PGRS family protein	Family_24_FUPA24_P-type_ATPase		
rhomboid family integral MB protein; putative Ser protease	Family_24_FUPA24_P-type_ATPase		
transmembrane acyltransferase (EC:2.3.1.-)	Family_24_FUPA24_P-type_ATPase		
Mycobacterium-specific FUPA24-localized posssible TMB protein	Family_24_FUPA24_P-type_ATPase		
two component transcriptional regulator, winged helix family	Family_24_FUPA24_P-type_ATPase		
L-2,4-diaminobutyric acid acetyltransferase (EC 2.3.1.-)	Family_24_FUPA24_P-type_ATPase		
Diaminobutyrate-pyruvate aminotransferase (EC 2.6.1.46)	Family_24_FUPA24_P-type_ATPase		
L-ectoine synthase (EC 4.2.1.-)	Family_24_FUPA24_P-type_ATPase		
Ectoine hydroxylase (EC 1.17.-.-)	Family_24_FUPA24_P-type_ATPase		
Streptomyces FUPA 24 localized putative MB protein	Family_24_FUPA24_P-type_ATPase		
FUPA24 P-type ATPase	Family_24_FUPA24_P-type_ATPase_ver.1		
hypothetical protein Rv0424c	Family_24_FUPA24_P-type_ATPase_ver.1		
Exodeoxyribonuclease III (EC 3.1.11.2)	Family_24_FUPA24_P-type_ATPase_ver.1		
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Family_24_FUPA24_P-type_ATPase_ver.1		
Histone acetyltransferase HPA2 and related acetyltransferases	Family_24_FUPA24_P-type_ATPase_ver.1		
Peptide deformylase (EC 3.5.1.88)	Family_24_FUPA24_P-type_ATPase_ver.1		
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Family_24_FUPA24_P-type_ATPase_ver.1		
putative Fis family transcriptional regulator	Family_24_FUPA24_P-type_ATPase_ver.1		
Tuberculin related peptide	Family_24_FUPA24_P-type_ATPase_ver.1		
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	Family_24_FUPA24_P-type_ATPase_ver.1		
hypothetical protein Rv0108c	Family_24_FUPA24_P-type_ATPase_ver.1		
Esterase/lipase/thioesterase family active site	Family_24_FUPA24_P-type_ATPase_ver.1		
carboxylate-amine ligase	Family_24_FUPA24_P-type_ATPase_ver.1		
Uncharacterized protein, similar to the N-terminal domain of Lon protease	Family_24_FUPA24_P-type_ATPase_ver.1		
Pantoate--beta-alanine ligase (EC 6.3.2.1)	Family_24_FUPA24_P-type_ATPase_ver.1		
PE-PGRS family protein	Family_24_FUPA24_P-type_ATPase_ver.1		
rhomboid family integral MB protein; putative Ser protease	Family_24_FUPA24_P-type_ATPase_ver.1		
transmembrane acyltransferase (EC:2.3.1.-)	Family_24_FUPA24_P-type_ATPase_ver.1		
Mycobacterium-specific FUPA24-localized posssible TMB protein	Family_24_FUPA24_P-type_ATPase_ver.1		
two component transcriptional regulator, winged helix family	Family_24_FUPA24_P-type_ATPase_ver.1		
L-2,4-diaminobutyric acid acetyltransferase (EC 2.3.1.-)	Family_24_FUPA24_P-type_ATPase_ver.1		
Diaminobutyrate-pyruvate aminotransferase (EC 2.6.1.46)	Family_24_FUPA24_P-type_ATPase_ver.1		
L-ectoine synthase (EC 4.2.1.-)	Family_24_FUPA24_P-type_ATPase_ver.1		
Ectoine hydroxylase (EC 1.17.-.-)	Family_24_FUPA24_P-type_ATPase_ver.1		
Streptomyces FUPA 24 localized putative MB protein	Family_24_FUPA24_P-type_ATPase_ver.1		
Thiazole biosynthetic enzyme Thi4	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HAD-like hydrolase domain	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
TenA2, thiaminase II (EC 3.5.99.2) homolog involved in salvage of thiamin pyrimidine moiety	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial thiamine diphosphate transporter TPC1	LB_thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein, Enterobacterial subgroup, YceA homolog	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Iron-sulfur cluster assembly protein SufB	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Ferric uptake regulation protein FUR	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
4Fe-4S ferredoxin, iron-sulfur binding	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Iron-sulfur cluster-binding protein	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
A/G-specific adenine glycosylase (EC 3.2.2.-)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Lipoate synthase	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
tRNA-i(6)A37 methylthiotransferase	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Sigma factor RpoE regulatory protein RseC	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Quinolinate synthetase (EC 2.5.1.72)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
L-aspartate oxidase (EC 1.4.3.16)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Aconitate hydratase (EC 4.2.1.3)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Aconitate hydratase 2 (EC 4.2.1.3)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydrofolate reductase (EC 1.5.1.3)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Ferredoxin	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese-related sulfurtransferase	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Actinobacterial subgroup	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Transcriptional regulator, FUR family	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Rickettsiales subgroup	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Betaproteobacterial subgroup	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Legionella subgroup	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Rhodanese domain protein UPF0176, Firmicutes subgroup	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Probable protein tyrosine phosphatase of the Cdc25-like phosphatase family	YgfZ-Fe-S	Miscellaneous	Plant-Prokaryote comparative genomics
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	YgfZ-Fe-S_clustering	Experimental Subsystems	
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	YgfZ-Fe-S_clustering	Experimental Subsystems	
Transcriptional regulator, FUR family	YgfZ-Fe-S_clustering	Experimental Subsystems	
4Fe-4S ferredoxin, iron-sulfur binding	YgfZ-Fe-S_clustering	Experimental Subsystems	
Ferredoxin	YgfZ-Fe-S_clustering	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufD	YgfZ-Fe-S_clustering	Experimental Subsystems	
A/G-specific adenine glycosylase (EC 3.2.2.-)	YgfZ-Fe-S_clustering	Experimental Subsystems	
Lipoate synthase	YgfZ-Fe-S_clustering	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	YgfZ-Fe-S_clustering	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	YgfZ-Fe-S_clustering	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	YgfZ-Fe-S_clustering	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	YgfZ-Fe-S_clustering	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	YgfZ-Fe-S_clustering	Experimental Subsystems	
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	YgfZ-Fe-S_clustering	Experimental Subsystems	
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	YgfZ-Fe-S_clustering	Experimental Subsystems	
Ferric uptake regulation protein FUR	YgfZ-Fe-S_clustering	Experimental Subsystems	
Rhodanese domain protein	YgfZ-Fe-S_clustering	Experimental Subsystems	
Iron-sulfur cluster-binding protein	YgfZ-Fe-S_clustering	Experimental Subsystems	
Sigma factor RpoE regulatory protein RseC	YgfZ-Fe-S_clustering	Experimental Subsystems	
Phosphocarrier protein of PTS system	PTS_uptake_system_scratch	Experimental Subsystems	
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, glucose-specific IIA component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, glucose-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, glucose-specific IIC component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, fructose-specific IIA component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, fructose-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, fructose-specific IIC component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIC component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, beta-glucoside-specific IIA component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, beta-glucoside-specific IIC component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, maltose-specific IIB component (EC 2.7.1.69)	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, maltose-specific IIC component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIA component	PTS_uptake_system_scratch	Experimental Subsystems	
Phosphocarrier protein, nitrogen regulation associated	PTS_uptake_system_scratch	Experimental Subsystems	
Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated	PTS_uptake_system_scratch	Experimental Subsystems	
Putative phosphotransferase enzyme IIA component YpqE	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, maltose-specific IIA component	PTS_uptake_system_scratch	Experimental Subsystems	
PTS system, mannitol-specific IIC component (EC 2.7.1.69)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
PTS system, mannitol-specific IIB component (EC 2.7.1.69)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
PTS system, mannitol-specific IIA component	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Mannitol operon repressor	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Fructokinase (EC 2.7.1.4)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Phosphocarrier protein of PTS system	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
PTS system, mannitol-specific cryptic IIA component (EC 2.7.1.69)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
PTS system, mannitol-specific cryptic IIB component (EC 2.7.1.69)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
PTS system, mannitol-specific cryptic IIC component (EC 2.7.1.69)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Mannitol operon activator, BglG family	Mannitol_Utilization	Carbohydrates	Sugar alcohols
HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Multiple polyol-specific dehydrogenase (EC 1.1.1.-)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Transcriptional regulator of mannitol utilization, DeoR family protein	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Predicted mannitol permease	Mannitol_Utilization	Carbohydrates	Sugar alcohols
Fructokinase in mannitol utilization gene cluster (EC 2.7.1.4)	Mannitol_Utilization	Carbohydrates	Sugar alcohols
tmRNA-binding protein SmpB	Trans-translation_by_stalled_ribosomes	Protein Metabolism	Protein biosynthesis
Transfer-messenger RNA (tmRNA) involved in trans-translation	Trans-translation_by_stalled_ribosomes	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
LSU ribosomal protein L32p, zinc-independent	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Mycobacterial persistence regulator MprA (Two component response transcriptional regulatory protein)	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Signal transduction histidine-protein kinase/phosphatase MprB (EC 2.7.13.3) (EC 3.1.3.-)	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
HtrA protease/chaperone family protein, Rv0983 homolog	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Pterin-4-alpha-carbinolamine dehydratase MoaB2	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Molybdenum cofactor biosynthesis protein MoaB	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Large-conductance mechanosensitive channel	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Heat shock protein 22.5 (Hsp22.5)	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Serine rich protein of unknown function in heat shock cluster	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Molybdopterin biosynthesis protein MoeA1	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Molybdopterin biosynthesis protein MoeA	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Ribosomal-protein-S5p-alanine acetyltransferase	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
Membrane protein in heat shock cluster	Heat_shock_protein_Hsp22.5_involved_in_pathogenesis_of_Mycobacterium_tuberculosis	Virulence	
DEAD-box ATP-dependent RNA helicase CshB (EC 3.6.4.13)	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase RhlE	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase YfmL	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase YxiN	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase DbpA	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase RhlB	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase SrmB	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase VCA0061	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase VCA0768	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase VCA0990	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase VC1407	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase PA3950	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase Atu1833	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase NGO0650	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase Bcep18194_A5658	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase VVA0939	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase VF1437	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase SO1501	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
ATP-dependent RNA helicase BA2475	ATP-dependent_RNA_helicases,_bacterial	RNA Metabolism	RNA processing and modification
Alkan-1-ol dehydrogenase, PQQ-dependent (EC 1.1.99.20)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Choline dehydrogenase (EC 1.1.99.1)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein A	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein B	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Pyrroloquinoline-quinone synthase (EC 1.3.3.11)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein D	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein E	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Methanol dehydrogenase large subunit protein (EC 1.1.99.8)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Polyvinyl-alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.23)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
PQQ-dependent oxidoreductase, gdhB family	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldA	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldB	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Uncharacterized dehydrogenase [pyrroloquinoline-quinone]	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Paralog of coenzyme PQQ synthesis protein C	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein F (EC 3.4.99.-)	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Similar to coenzyme PQQ synthesis protein B	Coenzyme_PQQ_synthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein A	Pyrroloquinoline_Quinone_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein B	Pyrroloquinoline_Quinone_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Pyrroloquinoline-quinone synthase (EC 1.3.3.11)	Pyrroloquinoline_Quinone_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein D	Pyrroloquinoline_Quinone_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein E	Pyrroloquinoline_Quinone_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Coenzyme PQQ synthesis protein F (EC 3.4.99.-)	Pyrroloquinoline_Quinone_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Microsomal dipeptidase (EC 3.4.13.19)	Pyrroloquinoline_Quinone_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Lysine 2,3-aminomutase (EC 5.4.3.2)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3,5-diaminohexanoate dehydrogenase (EC 1.4.1.11)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-keto-5-aminohexanoate cleavage enzyme	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-aminobutyrl-CoA ammonia lyase (EC 4.3.1.14)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyryl-CoA dehydrogenase (EC 1.3.8.1)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Electron transfer flavoprotein, alpha subunit	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Electron transfer flavoprotein, beta subunit	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Acetate kinase (EC 2.7.2.1)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
hypothetical protein clustered with lysine fermentation genes	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-lysine permease	Lysine_fermentation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine 2,3-aminomutase (EC 5.4.3.2)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3,5-diaminohexanoate dehydrogenase (EC 1.4.1.11)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-keto-5-aminohexanoate cleavage enzyme	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-aminobutyrl-CoA ammonia lyase (EC 4.3.1.14)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Enoyl-CoA hydratase (EC 4.2.1.17)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyryl-CoA dehydrogenase (EC 1.3.8.1)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-lysine permease	Lysine_fermentation_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	DUF89CLO	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	DUF89CLO	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	DUF89CLO	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	DUF89CLO	Experimental Subsystems	
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	DUF89CLO	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	DUF89CLO	Experimental Subsystems	
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	DUF89CLO	Experimental Subsystems	
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
4'-phosphopantetheinyl transferase (EC 2.7.8.-)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl carrier protein	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl carrier protein phosphodiesterase (EC 3.1.4.14)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Trans-2,cis-3-Decenoyl-ACP isomerase	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Transcriptional regulator of fatty acid biosynthesis FabT	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Holo-[acyl-carrier protein] synthase, alternative (EC 2.7.8.7)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASI, alternative (EC 2.3.1.41)	Fatty_Acid_Biosynthesis_FASII	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acid desaturase (EC 1.14.19.3)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Delta-6 fatty acid desaturase (EC 1.14.19.3)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Delta-5 fatty acid desaturase (EC 1.14.19.3)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Unsaturated fatty acid biosythesis repressor FabR, TetR family	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase, alternative (EC 4.2.1.60)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASI, alternative (EC 2.3.1.41)	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Trans-2,cis-3-Decenoyl-ACP isomerase	Unsaturated_Fatty_Acid_Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Outer membrane sugar transport protein YshA	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Glucuronide transport protein YihO	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Glucuronide transport protein YihP, homologous to YihO	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Alpha-glucosyltransferase YihQ	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Sugar-1-epimerase YihR	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Aldose-ketose isomerase YihS	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Aldolase YihT	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Succinic semialdehyde reductase [NAD] (EC 1.1.1.61)	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
Sugar kinase YihV	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
DeoR-type transcriptional regulator YihW	O-antigen_capsule_important_for_environmental_persistence	Stress Response	Dessication stress
DNA repair protein RadA	A_DNA_integrity_scanning_protein_that_co-occurs_with_RadA	Clustering-based subsystems	
DNA integrity scanning protein DisA	A_DNA_integrity_scanning_protein_that_co-occurs_with_RadA	Clustering-based subsystems	
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	position_37	Experimental Subsystems	
hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]	position_37	Experimental Subsystems	
tRNA dimethylallyltransferase (EC 2.5.1.75)	position_37	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	position_37	Experimental Subsystems	
Sua5 YciO YrdC YwlC family protein	position_37	Experimental Subsystems	
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)	position_37	Experimental Subsystems	
tRNA specific adenosine-37 deaminase (EC 3.5.4.-) Tad1p	position_37	Experimental Subsystems	
tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase (putative)	position_37	Experimental Subsystems	
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	tRNA_modification_position_37	Experimental Subsystems	
hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]	tRNA_modification_position_37	Experimental Subsystems	
tRNA dimethylallyltransferase (EC 2.5.1.75)	tRNA_modification_position_37	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	tRNA_modification_position_37	Experimental Subsystems	
Sua5 YciO YrdC YwlC family protein	tRNA_modification_position_37	Experimental Subsystems	
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)	tRNA_modification_position_37	Experimental Subsystems	
tRNA specific adenosine-37 deaminase (EC 3.5.4.-) Tad1p	tRNA_modification_position_37	Experimental Subsystems	
tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase (putative)	tRNA_modification_position_37	Experimental Subsystems	
tRNA-dihydrouridine synthase 1 (EC 1.-.-.-) modifies uridine residues at position 16 and 17 of cytoplasmic tRNAs	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA-dihydrouridine synthase 2 (EC 1.-.-.-) modifies uridine residues at position 20 of cytoplasmic tRNAs	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA N2,N2-dimethyl(Guanine26-N2)-methyltransferase (EC 2.1.1.32)	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase 2 (EC 5.4.99.-) modifies position27/28 in mitochondrial tRNA	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
Pseudouridylate synthase 9 (EC 5.4.99.-) responsible for modification ofmitochondrial tRNAs at position 32	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
Pseudouridylate synthase 6 (EC 5.4.99.-) responsible for modification of cytoplasmic and mitochondrial tRNAs at position 31	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
GTPase and tRNA-U34 5-formylation enzyme TrmE	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA dimethylallyltransferase (EC 2.5.1.75)	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
Sua5 YciO YrdC YwlC family protein	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase A (EC 4.2.1.70)	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 55 synthase (EC 4.2.1.70)	tRNA_modification_yeast_mitochondrial	RNA Metabolism	RNA processing and modification
Ribonuclease PH (EC 2.7.7.56)	tRNA_processing	RNA Metabolism	RNA processing and modification
Ribonuclease Z (EC 3.1.26.11)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 55 synthase (EC 4.2.1.70)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA-i(6)A37 methylthiotransferase	tRNA_processing	RNA Metabolism	RNA processing and modification
Ribonuclease BN (EC 3.1.-.-)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA dimethylallyltransferase (EC 2.5.1.75)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase A (EC 4.2.1.70)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase B (EC 4.2.1.70)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	tRNA_processing	RNA Metabolism	RNA processing and modification
Ribonuclease P protein component (EC 3.1.26.5)	tRNA_processing	RNA Metabolism	RNA processing and modification
Ribonuclease D (EC 3.1.26.3)	tRNA_processing	RNA Metabolism	RNA processing and modification
Ribonuclease T (EC 3.1.13.-)	tRNA_processing	RNA Metabolism	RNA processing and modification
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase	tRNA_processing	RNA Metabolism	RNA processing and modification
tRNAHis-5'-guanylyltransferase	tRNA_processing	RNA Metabolism	RNA processing and modification
Lysyl-tRNA synthetase (class I) (EC 6.1.1.6)	tRNA_aminoacylation,_Lys	Protein Metabolism	Protein biosynthesis
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	tRNA_aminoacylation,_Lys	Protein Metabolism	Protein biosynthesis
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), mitochondrial	tRNA_aminoacylation,_Lys	Protein Metabolism	Protein biosynthesis
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), chloroplast	tRNA_aminoacylation,_Lys	Protein Metabolism	Protein biosynthesis
L-O-lysylphosphatidylglycerol synthase (EC 2.3.2.3)	tRNA_aminoacylation,_Lys	Protein Metabolism	Protein biosynthesis
Lysyl-tRNA synthetase (class II) related protein found fused to membrane protein	tRNA_aminoacylation,_Lys	Protein Metabolism	Protein biosynthesis
Cysteine synthase (EC 2.5.1.47)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Adenylylsulfate kinase (EC 2.7.1.25)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Serine acetyltransferase (EC 2.3.1.30)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate permease	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transport system permease protein CysT	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-lyase (EC 4.4.1.1)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-synthase (EC 4.2.1.22)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase A (EC 2.5.1.47)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase B (EC 2.5.1.47)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transporter, CysZ-type	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate permease, Trk-type	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transport system permease protein CysW	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate and thiosulfate binding protein CysP	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cys regulon transcriptional activator CysB	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	Cysteine_Biosynthesis,_MCB_432	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
33 kDa chaperonin (Heat shock protein 33) (HSP33)	Rcs_negative_regulator_IgaA	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	Rcs_negative_regulator_IgaA	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Rcs_negative_regulator_IgaA	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system	Rcs_negative_regulator_IgaA	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
FIG001957: putative hydrolase	Rcs_negative_regulator_IgaA	Clustering-based subsystems	clustering of 2 heat shock proteins, phosphoenolpyruvate carboxykinase and a putative hydrolase
Transcriptional regulator, TetR family	FOL_RamA	Experimental Subsystems	
	FOL_RamA	Experimental Subsystems	
S-layer protein Sap	RP_Sap	Experimental Subsystems	
S-layer protein EA1	RP_Sap	Experimental Subsystems	
CsaB protein	RP_Sap	Experimental Subsystems	
Sodium-transporting N-ATPase beta subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase epsilon subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase Q subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase R subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase A subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase C subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase B subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase alpha subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase gamma subunit	N-ATPase-2	Respiration	Sodium Ion-Coupled Energetics
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 1, NDHA	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 2, NDHB	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 3, NDHC	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 5, NDHF	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit H, NDHH	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit I, NDHI	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit J, NDHJ	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit K, NDHK	Respiratory_Complex_I	Respiration	Electron donating reactions
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit M, NDHM	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH dehydrogenase I subunit 4, Involved in photosystem-1 cyclic electron flow	Respiratory_Complex_I	Respiration	Electron donating reactions
Putative subunit of NAD(P)H:quinone oxidoreductase	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH dehydrogenase subunit 4L	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH:ubiquinone oxidoreductase 17.2 kD subunit	Respiratory_Complex_I	Respiration	Electron donating reactions
Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH dehydrogenase, subunit 5	Respiratory_Complex_I	Respiration	Electron donating reactions
F420H2:quinone oxidoreductase, 11.2 kDa subunit, putative	Respiratory_Complex_I	Respiration	Electron donating reactions
F420H2:quinone oxidoreductase, 39 kDa subunit, putative	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH dehydrogenase subunit 2	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) homolog	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-quinone oxidoreductase subunit 15 (EC 1.6.99.5)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-quinone oxidoreductase chain F 2 (EC 1.6.99.5)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH-ubiquinone oxidoreductase chain G2 (EC 1.6.5.3)	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH dehydrogenase subunit 5	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH dehydrogenase subunit 1	Respiratory_Complex_I	Respiration	Electron donating reactions
NADH dehydrogenase subunit 3	Respiratory_Complex_I	Respiration	Electron donating reactions
Multiple antibiotic resistance protein MarA	FOL_Commensurate_regulon_activation	Stress Response	
Right origin-binding protein	FOL_Commensurate_regulon_activation	Stress Response	
Regulatory protein SoxS	FOL_Commensurate_regulon_activation	Stress Response	
Transcriptional regulator YkgA	FOL_Commensurate_regulon_activation	Stress Response	
RND efflux system, inner membrane transporter CmeB	FOL_Commensurate_regulon_activation	Stress Response	
Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family	FOL_Commensurate_regulon_activation	Stress Response	
Potassium efflux system KefA protein / Small-conductance mechanosensitive channel	FOL_Commensurate_regulon_activation	Stress Response	
Acriflavine resistance protein A (AcrA)	FOL_Commensurate_regulon_activation	Stress Response	
Transcriptional activator RamA	FOL_Commensurate_regulon_activation	Stress Response	
Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)	Raj_MurE	Cell Wall and Capsule	
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Raj_MurE	Cell Wall and Capsule	
Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)	Raj_MurE	Cell Wall and Capsule	
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	Raj_MurE	Cell Wall and Capsule	
Phosphoserine phosphatase (EC 3.1.3.3)	RCJ_pfr	Iron acquisition and metabolism	
Ferric uptake regulation protein FUR	RCJ_pfr	Iron acquisition and metabolism	
Ferrous iron transport protein B	RCJ_pfr	Iron acquisition and metabolism	
Ferrous iron transport protein A	RCJ_pfr	Iron acquisition and metabolism	
Nonheme iron-containing ferritin	RCJ_pfr	Iron acquisition and metabolism	
Cytochrome c551 peroxidase (EC 1.11.1.5)	RCJ_pfr	Iron acquisition and metabolism	
Haemin uptake system ATP-binding protein	RCJ_pfr	Iron acquisition and metabolism	
Putative two-component regulator	RCJ_pfr	Iron acquisition and metabolism	
Iron(III) dicitrate transport protein FecA	RCJ_pfr	Iron acquisition and metabolism	
ALPHA (1,3)-FUCOSYLTRANSFERASE	RCJ_pfr	Iron acquisition and metabolism	
iron(III) ABC transporter, periplasmic iron-binding protein (ceuE)	RCJ_pfr	Iron acquisition and metabolism	
IRON(III) DICITRATE TRANSPORT SYSTEM PERMEASE PROTEIN	RCJ_pfr	Iron acquisition and metabolism	
iron-regulated outer membrane protein (frpB)	RCJ_pfr	Iron acquisition and metabolism	
Flagellar biosynthesis protein FliC	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar hook-associated protein FliD	KAB_Flagellum	Experimental Subsystems	missing genes
RNA polymerase sigma factor for flagellar operon	KAB_Flagellum	Experimental Subsystems	missing genes
Cystine ABC transporter, periplasmic cystine-binding protein FliY	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliZ	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliS	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliT	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar transcriptional activator FlhD	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar transcriptional activator FlhC	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar motor rotation protein MotA	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar motor rotation protein MotB	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar hook-associated protein FlgL	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar hook-associated protein FlgK	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar P-ring protein FlgI	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar L-ring protein FlgH	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar basal-body rod protein FlgG	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar basal-body rod protein FlgF	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar hook protein FlgE	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar basal-body rod modification protein FlgD	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar basal-body rod protein FlgC	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar basal-body rod protein FlgB	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar basal-body P-ring formation protein FlgA	KAB_Flagellum	Experimental Subsystems	missing genes
Negative regulator of flagellin synthesis FlgM	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FlgN	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar hook-length control protein FliK	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliL	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar motor switch protein FliM	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar motor switch protein FliN	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliP	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliQ	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliR	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar protein FliJ	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellum-specific ATP synthase FliI	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar assembly protein FliH	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar motor switch protein FliG	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar M-ring protein FliF	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar hook-basal body complex protein FliE	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FlhA	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FlhB	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar protein FlhE	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellar biosynthesis protein FliO	KAB_Flagellum	Experimental Subsystems	missing genes
Flagellum-specific ATP synthase FliI	ER_TTSS	Experimental Subsystems	
FIG00493538: hypothetical protein	ER_TTSS	Experimental Subsystems	
FIG00493251: hypothetical protein	ER_TTSS	Experimental Subsystems	
OspD1	Type_III_Shigella	Experimental Subsystems	
OspC1	Type_III_Shigella	Experimental Subsystems	
ospF, 27.5 kDa virulence protein	Type_III_Shigella	Experimental Subsystems	
OspB	Type_III_Shigella	Experimental Subsystems	
RNA-binding protein Hfq	Hfq_and_related_genes	Experimental Subsystems	
tRNA dimethylallyltransferase (EC 2.5.1.75)	Hfq_and_related_genes	Experimental Subsystems	
HflK protein	Hfq_and_related_genes	Experimental Subsystems	
GTP-binding protein HflX	Hfq_and_related_genes	Experimental Subsystems	
HflC protein	Hfq_and_related_genes	Experimental Subsystems	
DNA mismatch repair protein MutL	Hfq_and_related_genes	Experimental Subsystems	
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Hfq_and_related_genes	Experimental Subsystems	
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Hfq_and_related_genes	Experimental Subsystems	
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	Hfq_and_related_genes	Experimental Subsystems	
Ribonuclease PH (EC 2.7.7.56)	Hfq_and_related_genes	Experimental Subsystems	
Ribonuclease E (EC 3.1.26.12)	Hfq_and_related_genes	Experimental Subsystems	
YjeF protein, function unknown	Hfq_and_related_genes	Experimental Subsystems	
Sodium-transporting N-ATPase beta subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase epsilon subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase Q subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase R subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase A subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase C subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase B subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase alpha subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Sodium-transporting N-ATPase gamma subunit	N-ATPase	Respiration	Sodium Ion-Coupled Energetics
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	LV_Cell_Wall_Synthesis	Experimental Subsystems	
Manganese superoxide dismutase (EC 1.15.1.1)	ER_SOD	Experimental Subsystems	
Copper sensory histidine kinase CpxA	ER_SOD	Experimental Subsystems	
Alkyl hydroperoxide reductase subunit C-like protein	ER_SOD	Experimental Subsystems	
Hydrogen peroxide-inducible genes activator	ER_SOD	Experimental Subsystems	
Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)	ER_SOD	Experimental Subsystems	
Thioredoxin	ER_SOD	Experimental Subsystems	
Superoxide dismutase [Mn] (EC 1.15.1.1)	ER_SOD	Experimental Subsystems	
Thioredoxin reductase (EC 1.8.1.9)	ER_SOD	Experimental Subsystems	
Virulence-regulating transcriptional regulator VirS (AraC/XylS family)	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Monooxygenase, flavin-binding family in mymA operon	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Acetyl-hydrolase/esterase LipR in mymA operon	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Oxidoreductase, short-chain dehydrogenase/reductase in mymA operon	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Zinc-type alcohol dehydrogenase (aldehyde reductase) in mymA operon	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative diacyglycerol O-acyltransferase Rv3087 in mymA operon	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Putative diacyglycerol O-acyltransferase Rv3088 in mymA operon	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD13	MymA_operon_of_Mycobacterium_tuberculosis	Virulence, Disease and Defense	Invasion and intracellular resistance
Ferric enterobactin transport ATP-binding protein FepC (TC 3.A.1.14.2)	APC_transporter	Experimental Subsystems	
Ferric enterobactin-binding periplasmic protein FepB (TC 3.A.1.14.2)	APC_transporter	Experimental Subsystems	
Ferric enterobactin transport system permease protein FepD (TC 3.A.1.14.2)	APC_transporter	Experimental Subsystems	
Ferric enterobactin transport system permease protein FepG (TC 3.A.1.14.2) @ ABC-type Fe3+-siderophore transport system, permease 2	APC_transporter	Experimental Subsystems	
SSU ribosomal protein S14p (S29e)	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S14p (S29e), zinc-dependent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S18p	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S18p, zinc-independent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28p	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28p, zinc-independent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31p	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31p, zinc-dependent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p, zinc-dependent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L33p	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L33p, zinc-dependent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S18p, zinc-dependent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L28p, zinc-dependent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36p	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S14p (S29e), zinc-independent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L32p, zinc-independent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L33p, zinc-independent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36p, zinc-dependent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L31p, zinc-independent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L36p, zinc-independent	Ribosomal_proteins,_zinc_requirement	Protein Metabolism	Protein biosynthesis
Putative cFMN hydrolase	cFMN_hydrolase	Experimental Subsystems	
Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29)	cFMN_hydrolase	Experimental Subsystems	
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	cFMN_hydrolase	Experimental Subsystems	
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK	cFMN_hydrolase	Experimental Subsystems	
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL	cFMN_hydrolase	Experimental Subsystems	
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM	cFMN_hydrolase	Experimental Subsystems	
RNA polymerase sigma factor RpoS	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
Protein yihD	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
UPF0028 protein YchK	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
UPF0225 protein YchJ	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
Hnr protein	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
protein iraP	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
YjiD protein	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
Cytoplasmic protein YaiB	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
anti-adapter protein IraM	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
HTH-type transcriptional regulator appY	RpoS_Regulators_SG1	Stress Response	General Stress Response and Stationary Phase Response
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Probable indole-3-pyruvate monooxygenase (EC 1.14.13.168)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Pyruvate decarboxylase (EC 4.1.1.1)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NAD synthetase (EC 6.3.1.5)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Acetolactate synthase large subunit (EC 2.2.1.6)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dihydroneopterin aldolase (EC 4.1.2.25)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Acetolactate synthase small subunit (EC 2.2.1.6)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Thiamine-biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	populate_now	Experimental Subsystems	
Non functional Dihydropteroate synthase 2	populate_now	Experimental Subsystems	
Autoinducer synthesis protein LuxI	Biolumenescence	Miscellaneous	
LuxA, luciferase alpha chain (EC 1.14.14.3)	Biolumenescence	Miscellaneous	
LuxB, luciferase beta chain (EC 1.14.14.3)	Biolumenescence	Miscellaneous	
LuxC, acyl-CoA reductase (EC 1.2.1.50)	Biolumenescence	Miscellaneous	
LuxD. acyl transferase (EC 2.3.1.-)	Biolumenescence	Miscellaneous	
LuxE, long-chain-fatty-acid ligase (EC 6.2.1.19)	Biolumenescence	Miscellaneous	
LuxG, NAD(P)H-dependent FMN reductase (EC 1.5.1.29)	Biolumenescence	Miscellaneous	
Transcriptional activator protein LuxR	Biolumenescence	Miscellaneous	
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Electron transfer flavoprotein, alpha subunit	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Electron transfer flavoprotein, beta subunit	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Transcriptional regulator BkdR of isoleucine and valine catabolism operon	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Leucine dehydrogenase (EC 1.4.1.9)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	Branched_chain_amino_acid_degradation_regulons	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Leucine dehydrogenase (EC 1.4.1.9)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Predicted transcriptional regulator of leucine degradation pathway, MerR family	HMG-CoA	Amino Acids and Derivatives	Branched-chain amino acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	HMG_CoA_Synthesis	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Leucine dehydrogenase (EC 1.4.1.9)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Predicted transcriptional regulator of leucine degradation pathway, MerR family	Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	Branched-chain amino acids
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	STU	Experimental Subsystems	
COG1872	STU	Experimental Subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	STU	Experimental Subsystems	
Twitching motility protein PilT	STU	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	STU	Experimental Subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	STU	Experimental Subsystems	
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	STU	Experimental Subsystems	
Adenylate cyclase (EC 4.6.1.1)	STU	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	STU	Experimental Subsystems	
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	STU	Experimental Subsystems	
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	STU	Experimental Subsystems	
COG0762	STU	Experimental Subsystems	
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	STU	Experimental Subsystems	
Predicted transcriptional regulator of pyridoxine metabolism	STU	Experimental Subsystems	
Guanylate cyclase (EC 4.6.1.2)	STU	Experimental Subsystems	
LSU ribosomal protein L1p (L10Ae)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L2p (L8e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L3p (L3e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L4p (L1e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L5p (L11e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L6p (L9e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L7/L12 (P1/P2)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L9p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L10p (P0)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L11p (L12e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L13p (L13Ae)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L14p (L23e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L15p (L27Ae)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L16p (L10e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L17p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L18p (L5e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L19p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L20p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L21p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L22p (L17e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L23p (L23Ae)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L24p (L26e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L27p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L29p (L35e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L34p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
LSU ribosomal protein L35p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S2p (SAe)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S3p (S3e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S4p (S9e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S5p (S2e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S6p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S7p (S5e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S8p (S15Ae)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S9p (S16e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S10p (S20e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S11p (S14e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S12p (S23e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S13p (S18e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S15p (S13e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S16p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S17p (S11e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S19p (S15e)	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S20p	Single-copy_ribosomal_proteins	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S1p	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S2p (SAe)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S3p (S3e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S4p (S9e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S5p (S2e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S6p	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S7p (S5e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S8p (S15Ae)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S9p (S16e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S10p (S20e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S11p (S14e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S12p (S23e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S13p (S18e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S14p (S29e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S15p (S13e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S16p	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S17p (S11e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S18p	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S19p (S15e)	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S20p	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein S21p	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
SSU ribosomal protein Thx	Ribosome_SSU_bacterial	Protein Metabolism	Protein biosynthesis
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also]	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Arabinose 5-phosphate isomerase (EC 5.3.1.13)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid A export ATP-binding/permease protein MsbA	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid-A-disaccharide synthase (EC 2.4.1.182)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54) homolog	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Lipopolysaccharide ABC transporter, ATP-binding protein LptB	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
LptA, protein essential for LPS transport across the periplasm	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Oligosaccharide repeat unit polymerase Wzy	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Predicted hydrolase of the metallo-beta-lactamase superfamily, clustered with KDO2-Lipid A biosynthesis genes	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7)	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
regulator of length of O-antigen component of lipopolysaccharide chains	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
O-antigen flippase Wzx	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Protein of unknown function DUF1009 clustered with KDO2-Lipid A biosynthesis genes	KDO2-Lipid_A_biosynthesis	Cell Wall and Capsule	Gram-Negative cell wall components
Biotin carboxyl carrier domain of homomeric Acetyl-CoA carboxylase	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxylase domain of homomeric ACCase (EC 6.3.4.14)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetyl-coenzyme A carboxyl transferase domain of homomeric ACCase (EC 6.4.1.2)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-[acyl-carrier-protein] reductase of FASI (EC 1.3.1.9)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
[Acyl-carrier-protein] palmitoyl transferase of FASI (EC 2.3.1.-)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl carrier protein of FASI	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] reductase of FASI (EC 1.1.1.100)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase of FASI (EC 2.3.1.41)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
[Acyl-carrier-protein] malonyl transferase of FASI (EC 2.3.1.39)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
4'-phosphopantetheinyl transferase of FASI (EC 2.7.8.7)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acyl-coenzyme A elongase 1	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acyl-coenzyme A elongase 2	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acyl-coenzyme A elongase 3	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-coenzyme A reductase of elongase (EC 1.1.1.62)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Trans-2,3-enoyl-cozyme A reductase of elongase (EC 1.-.-.-)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Fatty acyl-coenzyme A elongase	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Oleoyl-[acyl carrier protein] thioesterase of FASI (EC 3.1.2.14)	Fatty_Acid_Biosynthesis_FASI	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
6 kDa early secretory antigenic target ESAT-6 (EsxA)	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein, putative EssC component of Type VII secretion system	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Lmo0069 homolog within ESAT-6 gene cluster	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative EsaC protein analog (Listeria type 3)	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative secretion accessory protein EsaA/YueB	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative secretion accessory protein EsaB/YukD	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative secretion system component EssA	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative secretion system component EssB/YukC	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Repetitive hypothetical protein near ESAT cluster, SA0282 homolog	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
10 kDa culture filtrate antigen CFP-10 (EsxB)	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
EsaC protein within ESAT-6 gene cluster (S.aureus type)	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Lmo0066 homolog within ESAT-6 gene cluster, similarity to ADP-ribosylating toxins	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
SAV0291 homolog within ESAT-6 gene cluster	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Lmo0065 homolog within ESAT-6 gene cluster	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative EsaC protein analog (Listeria type 1)	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
SAG1025 homolog within ESAT-6 gene cluster	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Repetitive hypothetical protein in ESAT cluster, BH0979 homolog	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative toxin component near putative ESAT-related proteins, repetitive	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative EsaC protein analog (Listeria type 2)	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative ESAT-secreted protein, BA2187 homolog	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative ESAT-secreted protein, BA2188 homolog	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative ESAT-secreted protein, BA2189 homolog	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Tetratrico-peptide repeat (TPR) protein within ESAT-6 gene cluster	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
Putative EsaC protein analog (Listeria type 4)	ESAT-6_proteins_secretion_system_in_Firmicutes	Membrane Transport	Protein secretion system, Type VII
DNA recombination and repair protein RecF	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
DNA recombination and repair protein RecO	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
RecA protein	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
Recombination protein RecR	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
FIG000557: hypothetical protein co-occurring with RecR	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
Single-stranded DNA-binding protein	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
ATP-dependent DNA helicase RecQ	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
ATP-dependent DNA helicase, RecQ family	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
Single-stranded-DNA-specific exonuclease RecJ, Bacteriophage SPBc2-type	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog	DNA_repair,_bacterial_RecFOR_pathway	DNA Metabolism	DNA repair
NAD kinase (EC 2.7.1.23)	NADP(H)_phosphatase	Experimental Subsystems	
NADP phosphatase (EC 3.1.3.-)	NADP(H)_phosphatase	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	NADP(H)_phosphatase	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	NADP(H)_phosphatase	Experimental Subsystems	
Predicted NADP phosphatase	NADP(H)_phosphatase	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	NADP(H)_phosphatase	Experimental Subsystems	
FdC1	NADP(H)_phosphatase	Experimental Subsystems	
Predicted ThMP phosphatase	NADP(H)_phosphatase	Experimental Subsystems	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	NADP(H)_phosphatase	Experimental Subsystems	
Anthranilate synthase, aminase component (EC 4.1.3.27)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase alpha chain (EC 4.2.1.20)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase beta chain (EC 4.2.1.20)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aminodeoxychorismate lyase (EC 4.1.3.38)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase beta chain like (EC 4.2.1.20)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Dethiobiotin synthetase (EC 6.3.3.3)	CLO_Biotin	Experimental Subsystems	
Biotin synthase (EC 2.8.1.6)	CLO_Biotin	Experimental Subsystems	
Adrenodoxin reductase	CLO_Biotin	Experimental Subsystems	
Serine acetyltransferase (EC 2.3.1.30)	CLO_Cysteine	Experimental Subsystems	
Cysteine synthase (EC 2.5.1.47)	CLO_Cysteine	Experimental Subsystems	
Cysteine synthase B (EC 2.5.1.47)	CLO_Cysteine	Experimental Subsystems	
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	rRNA_methylation_in_clusters	Experimental Subsystems	
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	rRNA_methylation_in_clusters	Experimental Subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	rRNA_methylation_in_clusters	Experimental Subsystems	
Organic solvent tolerance protein precursor	rRNA_methylation_in_clusters	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	rRNA_methylation_in_clusters	Experimental Subsystems	
NAD kinase (EC 2.7.1.23)	rRNA_methylation_in_clusters	Experimental Subsystems	
DNA repair protein RecN	rRNA_methylation_in_clusters	Experimental Subsystems	
Riboflavin kinase (EC 2.7.1.26)	rRNA_methylation_in_clusters	Experimental Subsystems	
FMN adenylyltransferase (EC 2.7.7.2)	rRNA_methylation_in_clusters	Experimental Subsystems	
DNA ligase (EC 6.5.1.2)	rRNA_methylation_in_clusters	Experimental Subsystems	
Trk system potassium uptake protein trkA	rRNA_methylation_in_clusters	Experimental Subsystems	
RNA methyltransferase, TrmA family	rRNA_methylation_in_clusters	Experimental Subsystems	
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	rRNA_methylation_in_clusters	Experimental Subsystems	
Histidyl-tRNA synthetase (EC 6.1.1.21)	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribosome small subunit-stimulated GTPase EngC	rRNA_methylation_in_clusters	Experimental Subsystems	
Peptide deformylase (EC 3.5.1.88)	rRNA_methylation_in_clusters	Experimental Subsystems	
Peptide chain release factor 3	rRNA_methylation_in_clusters	Experimental Subsystems	
CTP synthase (EC 6.3.4.2)	rRNA_methylation_in_clusters	Experimental Subsystems	
Octaprenyl diphosphate synthase (EC 2.5.1.90)	rRNA_methylation_in_clusters	Experimental Subsystems	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	rRNA_methylation_in_clusters	Experimental Subsystems	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	rRNA_methylation_in_clusters	Experimental Subsystems	
Methionyl-tRNA synthetase (EC 6.1.1.10)	rRNA_methylation_in_clusters	Experimental Subsystems	
Putative deoxyribonuclease YcfH	rRNA_methylation_in_clusters	Experimental Subsystems	
GTP-binding and nucleic acid-binding protein YchF	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribosomal RNA small subunit methyltransferase G (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
ATP synthase F0 sector subunit a	rRNA_methylation_in_clusters	Experimental Subsystems	
RNA binding methyltransferase FtsJ like	rRNA_methylation_in_clusters	Experimental Subsystems	
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	rRNA_methylation_in_clusters	Experimental Subsystems	
Protein serine/threonine phosphatase PrpC, regulation of stationary phase	rRNA_methylation_in_clusters	Experimental Subsystems	
Serine/threonine protein kinase PrkC, regulator of stationary phase	rRNA_methylation_in_clusters	Experimental Subsystems	
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
Integrase/recombinase xerD	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribonuclease PH (EC 2.7.7.56)	rRNA_methylation_in_clusters	Experimental Subsystems	
rRNA adenine N-6-methyltransferase (erm/ksgA)	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
Paraquat-inducible protein B	rRNA_methylation_in_clusters	Experimental Subsystems	
Paraquat-inducible protein A	rRNA_methylation_in_clusters	Experimental Subsystems	
Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)	rRNA_methylation_in_clusters	Experimental Subsystems	
23S rRNA (Uracil-5-) -methyltransferase rumA (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
Arsenical pump membrane protein	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52)	rRNA_methylation_in_clusters	Experimental Subsystems	
DNA polymerase III psi subunit (EC 2.7.7.7)	rRNA_methylation_in_clusters	Experimental Subsystems	
Sun protein	rRNA_methylation_in_clusters	Experimental Subsystems	
Putative stomatin/prohibitin-family membrane protease subunit aq_911	rRNA_methylation_in_clusters	Experimental Subsystems	
Putative membrane-bound ClpP-class protease associated with aq_911	rRNA_methylation_in_clusters	Experimental Subsystems	
SSU ribosomal protein S13e (S15p)	rRNA_methylation_in_clusters	Experimental Subsystems	
Probable ribosome biogenesis protein NEP1	rRNA_methylation_in_clusters	Experimental Subsystems	
tRNA and rRNA cytosine-C5-methylases	rRNA_methylation_in_clusters	Experimental Subsystems	
Fibrillarin	rRNA_methylation_in_clusters	Experimental Subsystems	
LSU ribosomal protein L21e	rRNA_methylation_in_clusters	Experimental Subsystems	
SSU ribosomal protein S3Ae	rRNA_methylation_in_clusters	Experimental Subsystems	
Shwachman-Bodian-Diamond syndrome protein	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribonuclease P protein component 2 (EC 3.1.26.5)	rRNA_methylation_in_clusters	Experimental Subsystems	
Nucleolar protein NOP5	rRNA_methylation_in_clusters	Experimental Subsystems	
Translation initiation factor 1A	rRNA_methylation_in_clusters	Experimental Subsystems	
LSU ribosomal protein L37Ae	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribonuclease P protein component 4 (EC 3.1.26.5)	rRNA_methylation_in_clusters	Experimental Subsystems	
organic solvent tolerance protein homolog	rRNA_methylation_in_clusters	Experimental Subsystems	
murein peptide permease protein AmpG	rRNA_methylation_in_clusters	Experimental Subsystems	
Putative ribosomal RNA small subunit methyltransferase J (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
tRNA/RNA cytosine-C5-methylase (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
Nucleolar protein Nop56	rRNA_methylation_in_clusters	Experimental Subsystems	
SSU ribosomal protein S30e	rRNA_methylation_in_clusters	Experimental Subsystems	
Eukaryotic translation initiation factor 3 subunit 5	rRNA_methylation_in_clusters	Experimental Subsystems	
Ribonuclease P protein component 3 (EC 3.1.26.5)	rRNA_methylation_in_clusters	Experimental Subsystems	
4-nitrophenylphosphatase (EC 3.1.3.41)	rRNA_methylation_in_clusters	Experimental Subsystems	
CONSERVED HYPOTHETICAL ALANINE AND GLYCINE AND VALINE RICH PROTEIN	rRNA_methylation_in_clusters	Experimental Subsystems	
hypothetical protein Rv1698	rRNA_methylation_in_clusters	Experimental Subsystems	
Predicted RNA-binding protein COG1491	rRNA_methylation_in_clusters	Experimental Subsystems	
DNA-directed RNA polymerase subunit F (EC 2.7.7.6)	rRNA_methylation_in_clusters	Experimental Subsystems	
rRNA biogenesis protein Nop5/Nop56	rRNA_methylation_in_clusters	Experimental Subsystems	
tRNA N2,N2-dimethyl(Guanine26-N2)-methyltransferase (EC 2.1.1.32)	rRNA_methylation_in_clusters	Experimental Subsystems	
tRNA pseudouridine 55 synthase Archaea	rRNA_methylation_in_clusters	Experimental Subsystems	
predicted exosome subunit	rRNA_methylation_in_clusters	Experimental Subsystems	
PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE AND VALINE AND LEUCINE RICH PROTEIN	rRNA_methylation_in_clusters	Experimental Subsystems	
PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE AND LEUCINE RICH PROTEIN	rRNA_methylation_in_clusters	Experimental Subsystems	
Deacetylases, including yeast histone deacetylase and acetoin utilization protein	rRNA_methylation_in_clusters	Experimental Subsystems	
PROBABLE ANTIBIOTIC-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER	rRNA_methylation_in_clusters	Experimental Subsystems	
Prohibitin	rRNA_methylation_in_clusters	Experimental Subsystems	
Probable ribosome biogenesis protein NEP1-like	rRNA_methylation_in_clusters	Experimental Subsystems	
Probable exosome complex RNA-binding protein 1	rRNA_methylation_in_clusters	Experimental Subsystems	
Exosome complex exonuclease 1	rRNA_methylation_in_clusters	Experimental Subsystems	
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-)	rRNA_methylation_in_clusters	Experimental Subsystems	
rRNA adenine N-6-methyltransferase (EC 2.1.1.48)	rRNA_methylation_in_clusters	Experimental Subsystems	
RNA methyltransferase, TrmH family, group 1	rRNA_methylation_in_clusters	Experimental Subsystems	
Vimentin	rRNA_methylation_in_clusters	Experimental Subsystems	
putative NOL1-NOP2-sun family nucleolar protein	rRNA_methylation_in_clusters	Experimental Subsystems	
3-oxo-5-alpha-steroid 4-dehydrogenase 2 (EC 1.3.99.5)	rRNA_methylation_in_clusters	Experimental Subsystems	
Dual-specificity tyrosine-phosphorylation regulated kinase 1B (EC 2.7.11.1) (EC 2.7.10.2)	rRNA_methylation_in_clusters	Experimental Subsystems	
Adenylate cyclase, type IV (EC 4.6.1.1)	rRNA_methylation_in_clusters	Experimental Subsystems	
Ubiquitin-conjugating enzyme E2Q	rRNA_methylation_in_clusters	Experimental Subsystems	
tRNA and rRNA cytosine-C5-methylase Type 1	rRNA_methylation_in_clusters	Experimental Subsystems	
PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND VALINE RICH PROTEIN ABC TRANSPORTER	rRNA_methylation_in_clusters	Experimental Subsystems	
23S rRNA methyltransferase and Florfenicol/chloramphenicol resistance protein	rRNA_methylation_in_clusters	Experimental Subsystems	
Sun/nucleolar protein family protein	rRNA_methylation_in_clusters	Experimental Subsystems	
Multidomain scavenger receptor protein PbSR precursor	rRNA_methylation_in_clusters	Experimental Subsystems	
Trk system potassium uptake protein TrkA	Hyperosmotic_potassium_uptake	Potassium metabolism	
Potassium uptake protein, integral membrane component, KtrB	Hyperosmotic_potassium_uptake	Potassium metabolism	
Potassium uptake protein, integral membrane component, KtrD	Hyperosmotic_potassium_uptake	Potassium metabolism	
Na(+) H(+) antiporter subunit A	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit B	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit C	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit D	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit E	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit F	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit G	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Glutathione-regulated potassium-efflux system protein kefB	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Kup system potassium uptake protein	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na+/H+ antiporter NhaA type	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein family 5	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Glutathione-regulated potassium-efflux system protein KefC	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Cation transporting ATPase, N-terminal:Haloacid dehalogenase-like hydrolase:Cation transporting ATPase, C-terminal:E1-E2 ATPase- associated region	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein family 4	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.2)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.2)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.2)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit D (TC 2.A.63.1.2)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit E (TC 2.A.63.1.2)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.2)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit G (TC 2.A.63.1.2)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Trk system potassium uptake protein TrkA	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Potassium uptake protein, integral membrane component, KtrB	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein family 1	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Glutathione-regulated potassium-efflux system ancillary protein KefG	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.3)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.3)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.3)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit D (TC 2.A.63.1.3)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit E (TC 2.A.63.1.3)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.3)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Na(+) H(+) antiporter subunit G (TC 2.A.63.1.3)	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein A	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein B	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein E	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein C	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein D	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein F	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein G	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein family 8	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Universal stress protein family 6	Multiple_resistance_and_pH-related_antiporter_Mrp	Experimental Subsystems	
Kup system potassium uptake protein	Potassium_homeostasis	Potassium metabolism	
Large-conductance mechanosensitive channel	Potassium_homeostasis	Potassium metabolism	
Potassium efflux system KefA protein	Potassium_homeostasis	Potassium metabolism	
Trk system potassium uptake protein TrkA	Potassium_homeostasis	Potassium metabolism	
Potassium uptake protein, integral membrane component, KtrB	Potassium_homeostasis	Potassium metabolism	
Glutathione-regulated potassium-efflux system protein KefC	Potassium_homeostasis	Potassium metabolism	
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Potassium_homeostasis	Potassium metabolism	
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium_homeostasis	Potassium metabolism	
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium_homeostasis	Potassium metabolism	
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium_homeostasis	Potassium metabolism	
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)	Potassium_homeostasis	Potassium metabolism	
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	Potassium_homeostasis	Potassium metabolism	
Potassium uptake protein TrkH	Potassium_homeostasis	Potassium metabolism	
Potassium voltage-gated channel subfamily KQT	Potassium_homeostasis	Potassium metabolism	
Potassium channel protein	Potassium_homeostasis	Potassium metabolism	
Glutathione-regulated potassium-efflux system ATP-binding protein	Potassium_homeostasis	Potassium metabolism	
Glutathione-regulated potassium-efflux system ancillary protein KefG	Potassium_homeostasis	Potassium metabolism	
POTASSIUM/PROTON ANTIPORTER ROSB	Potassium_homeostasis	Potassium metabolism	
Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux	Potassium_homeostasis	Potassium metabolism	
putative Glutathione-regulated potassium-efflux system protein KefB	Potassium_homeostasis	Potassium metabolism	
cAMP-dependent Kef-type K+ transport system	Potassium_homeostasis	Potassium metabolism	
Kef-type K+ transport systems (NAD-binding component fused to domain related to exopolyphosphatase)	Potassium_homeostasis	Potassium metabolism	
Kef-type transport system 2 (probable substrate potassium), subunit 1	Potassium_homeostasis	Potassium metabolism	
Kef-type transport system 2 (probable substrate potassium), subunit 2	Potassium_homeostasis	Potassium metabolism	
Trk system potassium uptake protein TrkG	Potassium_homeostasis	Potassium metabolism	
TrkA-N:Sodium/hydrogen exchanger	Potassium_homeostasis	Potassium metabolism	
Glutathione-regulated potassium-efflux system ancillary protein KefF	Potassium_homeostasis	Potassium metabolism	
Voltage-gated potassium channel	Potassium_homeostasis	Potassium metabolism	
Glutathione-regulated potassium-efflux system protein KefKL	Potassium_homeostasis	Potassium metabolism	
Possible potassium-efflux system protein	Potassium_homeostasis	Potassium metabolism	
Potassium channel protein 1 (MjK1)	Potassium_homeostasis	Potassium metabolism	
Binding-protein-dependent transport systems inner membrane component:ATP/GTP-binding site motif A (P-loop) :TrkA-N:Potassium e	Potassium_homeostasis	Potassium metabolism	
K transporter trk	Potassium_homeostasis	Potassium metabolism	
Kup system potassium uptake protein	Potassium_homeostasis_Pavel	Experimental Subsystems	
Large-conductance mechanosensitive channel	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium channel protein	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium efflux system KefA / Small-conductance mechanosensitive channel	Potassium_homeostasis_Pavel	Experimental Subsystems	
Trk system potassium uptake protein TrkA	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium uptake protein, integral membrane component, KtrB	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium_homeostasis_Pavel	Experimental Subsystems	
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Potassium_homeostasis_Pavel	Experimental Subsystems	
KdpE	Potassium_homeostasis_Pavel	Experimental Subsystems	
DNA-binding response regulator KdpE	Potassium_homeostasis_Pavel	Experimental Subsystems	
Trk system potassium uptake protein trkA	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium voltage-gated channel subfamily KQT	Potassium_homeostasis_Pavel	Experimental Subsystems	
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	Potassium_homeostasis_Pavel	Experimental Subsystems	
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium uptake protein TrkH	Potassium_homeostasis_Pavel	Experimental Subsystems	
Glutathione-regulated potassium-efflux system ATP-binding protein	Potassium_homeostasis_Pavel	Experimental Subsystems	
Glutathione-regulated potassium-efflux system ancillary protein KefG	Potassium_homeostasis_Pavel	Experimental Subsystems	
Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux	Potassium_homeostasis_Pavel	Experimental Subsystems	
putative Glutathione-regulated potassium-efflux system protein KefB	Potassium_homeostasis_Pavel	Experimental Subsystems	
Glutathione-regulated potassium-efflux system protein KefC	Potassium_homeostasis_Pavel	Experimental Subsystems	
cAMP-dependent Kef-type K+ transport system	Potassium_homeostasis_Pavel	Experimental Subsystems	
Kef-type K+ transport systems (NAD-binding component fused to domain related to exopolyphosphatase)	Potassium_homeostasis_Pavel	Experimental Subsystems	
Trk system potassium uptake protein TrkG	Potassium_homeostasis_Pavel	Experimental Subsystems	
Glutathione-regulated potassium-efflux system ancillary protein KefF	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium voltage-gated channel subfamily A member 4	Potassium_homeostasis_Pavel	Experimental Subsystems	
Potassium voltage-gated channel subfamily B member 1	Potassium_homeostasis_Pavel	Experimental Subsystems	
Universal stress protein family 4	Potassium_homeostasis_Pavel	Experimental Subsystems	
Voltage-gated potassium channel	Potassium_homeostasis_Pavel	Experimental Subsystems	
Universal stress protein family 1	Potassium_homeostasis_Pavel	Experimental Subsystems	
Glutathione-regulated potassium-efflux system protein KefKL	Potassium_homeostasis_Pavel	Experimental Subsystems	
Universal stress protein family 6	Potassium_homeostasis_Pavel	Experimental Subsystems	
Thiamin ABC transporter, ATPase component	Transporters_In_Models	Experimental Subsystems	
Thiamin ABC transporter, substrate-binding component	Transporters_In_Models	Experimental Subsystems	
Aromatic amino acid transport protein aroP	Transporters_In_Models	Experimental Subsystems	
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)	Transporters_In_Models	Experimental Subsystems	
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	Transporters_In_Models	Experimental Subsystems	
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)	Transporters_In_Models	Experimental Subsystems	
Ferrichrome transport system permease protein fhuB (TC 3.A.1.14.3)	Transporters_In_Models	Experimental Subsystems	
Vitamin B12 ABC transporter, B12-binding component BtuF	Transporters_In_Models	Experimental Subsystems	
Methionine ABC transporter substrate-binding protein	Transporters_In_Models	Experimental Subsystems	
Methionine ABC transporter permease protein	Transporters_In_Models	Experimental Subsystems	
Methionine ABC transporter ATP-binding protein	Transporters_In_Models	Experimental Subsystems	
High-affinity choline uptake protein BetT	Transporters_In_Models	Experimental Subsystems	
Taurine-binding periplasmic protein tauA	Transporters_In_Models	Experimental Subsystems	
Taurine transport ATP-binding protein tauB	Transporters_In_Models	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Transporters_In_Models	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Transporters_In_Models	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Transporters_In_Models	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Transporters_In_Models	Experimental Subsystems	
Ammonium transporter	Transporters_In_Models	Experimental Subsystems	
Cation efflux system protein cusF precursor	Transporters_In_Models	Experimental Subsystems	
Phenylalanine-specific permease	Transporters_In_Models	Experimental Subsystems	
TonB-dependent receptor	Transporters_In_Models	Experimental Subsystems	
Thiol:disulfide interchange protein DsbG precursor	Transporters_In_Models	Experimental Subsystems	
C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)	Transporters_In_Models	Experimental Subsystems	
Glutamate Aspartate transport ATP-binding protein gltL (TC 3.A.1.3.4)	Transporters_In_Models	Experimental Subsystems	
Glutamate Aspartate transport system permease protein gltK (TC 3.A.1.3.4)	Transporters_In_Models	Experimental Subsystems	
Glutamate Aspartate transport system permease protein gltJ (TC 3.A.1.3.4)	Transporters_In_Models	Experimental Subsystems	
Glutamate Aspartate periplasmic binding protein precursor gltI (TC 3.A.1.3.4)	Transporters_In_Models	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIA component	Transporters_In_Models	Experimental Subsystems	
Putrescine/proton symporter, putrescine/ornithine antiporter PotE	Transporters_In_Models	Experimental Subsystems	
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Transporters_In_Models	Experimental Subsystems	
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Transporters_In_Models	Experimental Subsystems	
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Transporters_In_Models	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Transporters_In_Models	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Transporters_In_Models	Experimental Subsystems	
Molybdenum ABC transporter, periplasmic molybdenum-binding protein modA (TC 3.A.1.8.1)	Transporters_In_Models	Experimental Subsystems	
Molybdenum transport system permease protein modB (TC 3.A.1.8.1)	Transporters_In_Models	Experimental Subsystems	
Molybdenum transport ATP-binding protein modC (TC 3.A.1.8.1)	Transporters_In_Models	Experimental Subsystems	
Ferrichrome-iron receptor	Transporters_In_Models	Experimental Subsystems	
Glutamine transport ATP-binding protein glnQ (TC 3.A.1.3.2)	Transporters_In_Models	Experimental Subsystems	
Glutamine transport system permease protein glnP (TC 3.A.1.3.2)	Transporters_In_Models	Experimental Subsystems	
Glutothione ABC transporter ATP-binding protein	Transporters_In_Models	Experimental Subsystems	
Glutothione ABC transporter periplasmic binding protein	Transporters_In_Models	Experimental Subsystems	
Glutothione ABC transporter permease protein	Transporters_In_Models	Experimental Subsystems	
Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-)	Transporters_In_Models	Experimental Subsystems	
Multidrug translocase mdfA	Transporters_In_Models	Experimental Subsystems	
Putrescine ABC transporter putrescine-binding protein potF (TC 3.A.1.11.2)	Transporters_In_Models	Experimental Subsystems	
Putrescine transport ATP-binding protein potG (TC 3.A.1.11.2)	Transporters_In_Models	Experimental Subsystems	
Putrescine transport system permease protein potH (TC 3.A.1.11.2)	Transporters_In_Models	Experimental Subsystems	
Putrescine transport system permease protein potI (TC 3.A.1.11.2)	Transporters_In_Models	Experimental Subsystems	
Aquaporin Z	Transporters_In_Models	Experimental Subsystems	
Formate efflux transporter (TC 2.A.44 family)	Transporters_In_Models	Experimental Subsystems	
Outer membrane protein F precursor	Transporters_In_Models	Experimental Subsystems	
Alkanesulfonates ABC transporter ATP-binding protein	Transporters_In_Models	Experimental Subsystems	
Sulfonate ABC transporter, ATP-binding subunit SsuB	Transporters_In_Models	Experimental Subsystems	
Alkanesulfonates transport system permease protein	Transporters_In_Models	Experimental Subsystems	
Alkanesulfonates-binding protein	Transporters_In_Models	Experimental Subsystems	
Outer membrane protein A precursor	Transporters_In_Models	Experimental Subsystems	
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	Transporters_In_Models	Experimental Subsystems	
Uptake hydrogenase large subunit (EC 1.12.99.6)	Transporters_In_Models	Experimental Subsystems	
Ni,Fe-hydrogenase I cytochrome b subunit	Transporters_In_Models	Experimental Subsystems	
Cytochrome c-type protein TorC	Transporters_In_Models	Experimental Subsystems	
Trimethylamine-N-oxide reductase (EC 1.6.6.9)	Transporters_In_Models	Experimental Subsystems	
FhuE receptor precursor	Transporters_In_Models	Experimental Subsystems	
ABC transporter, periplasmic spermidine putrescine-binding protein potD (TC_3.A.1.11.1)	Transporters_In_Models	Experimental Subsystems	
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)	Transporters_In_Models	Experimental Subsystems	
Spermidine Putrescine ABC transporter permease component potB (TC_3.A.1.11.1)	Transporters_In_Models	Experimental Subsystems	
Spermidine Putrescine transport ATP-binding protein potA (TC_3.A.1.11.1)	Transporters_In_Models	Experimental Subsystems	
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation	Transporters_In_Models	Experimental Subsystems	
Calcium/proton antiporter	Transporters_In_Models	Experimental Subsystems	
Nitrate/nitrite transporter	Transporters_In_Models	Experimental Subsystems	
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Transporters_In_Models	Experimental Subsystems	
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Transporters_In_Models	Experimental Subsystems	
Respiratory nitrate reductase delta chain (EC 1.7.99.4)	Transporters_In_Models	Experimental Subsystems	
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	Transporters_In_Models	Experimental Subsystems	
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	Transporters_In_Models	Experimental Subsystems	
Putative potassium channel protein	Transporters_In_Models	Experimental Subsystems	
Peptide transport system ATP-binding protein sapD (TC 3.A.1.5.5)	Transporters_In_Models	Experimental Subsystems	
Putrescine importer	Transporters_In_Models	Experimental Subsystems	
Outer membrane protein G precursor	Transporters_In_Models	Experimental Subsystems	
Outer membrane protein N precursor	Transporters_In_Models	Experimental Subsystems	
Formate dehydrogenase N beta subunit (EC 1.2.1.2)	Transporters_In_Models	Experimental Subsystems	
Formate dehydrogenase N gamma subunit (EC 1.2.1.2)	Transporters_In_Models	Experimental Subsystems	
Dipeptide transport ATP-binding protein dppF (TC 3.A.1.5.2)	Transporters_In_Models	Experimental Subsystems	
puatative hemin transporter subunit	Transporters_In_Models	Experimental Subsystems	
Dipeptide transport system permease protein dppC (TC 3.A.1.5.2)	Transporters_In_Models	Experimental Subsystems	
Putative hemine transporter ATP-binding subunit	Transporters_In_Models	Experimental Subsystems	
Dipeptide transport system permease protein dppB (TC 3.A.1.5.2)	Transporters_In_Models	Experimental Subsystems	
putative hemin permease	Transporters_In_Models	Experimental Subsystems	
Probable sugar efflux transporter	Transporters_In_Models	Experimental Subsystems	
Probable amino acid metabolite efflux pump	Transporters_In_Models	Experimental Subsystems	
Voltage-gated ClC-type chloride channel clcB	Transporters_In_Models	Experimental Subsystems	
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	Transporters_In_Models	Experimental Subsystems	
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	Transporters_In_Models	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Transporters_In_Models	Experimental Subsystems	
PTS system, mannose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, mannose-specific IID component	Transporters_In_Models	Experimental Subsystems	
Zinc ABC transporter, periplasmic-binding protein ZnuA	Transporters_In_Models	Experimental Subsystems	
Zinc ABC transporter, ATP-binding protein ZnuC	Transporters_In_Models	Experimental Subsystems	
Zinc ABC transporter, inner membrane permease protein ZnuB	Transporters_In_Models	Experimental Subsystems	
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	Transporters_In_Models	Experimental Subsystems	
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	Transporters_In_Models	Experimental Subsystems	
Tyrosine-specific transport protein	Transporters_In_Models	Experimental Subsystems	
PTS system, galactitol-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, galactitol-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, galactitol-specific IIA component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Putative transport system permease protein	Transporters_In_Models	Experimental Subsystems	
Hypothetical ABC transporter ATP-binding protein yehX	Transporters_In_Models	Experimental Subsystems	
Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	Transporters_In_Models	Experimental Subsystems	
Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	Transporters_In_Models	Experimental Subsystems	
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	Transporters_In_Models	Experimental Subsystems	
Colicin I receptor precursor	Transporters_In_Models	Experimental Subsystems	
PTS system, fructose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, fructose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Fructose-specific phosphocarrier protein HPr	Transporters_In_Models	Experimental Subsystems	
PTS system, fructose-specific IIA component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Sugar efflux transporter B	Transporters_In_Models	Experimental Subsystems	
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE	Transporters_In_Models	Experimental Subsystems	
ABC transporter involved in cytochrome c biogenesis, CcmB subunit	Transporters_In_Models	Experimental Subsystems	
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA	Transporters_In_Models	Experimental Subsystems	
Cytochrome c-type protein NapC	Transporters_In_Models	Experimental Subsystems	
Nitrate reductase cytochrome c550-type subunit	Transporters_In_Models	Experimental Subsystems	
Polyferredoxin NapH (periplasmic nitrate reductase)	Transporters_In_Models	Experimental Subsystems	
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Transporters_In_Models	Experimental Subsystems	
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Transporters_In_Models	Experimental Subsystems	
Outer membrane protein C precursor	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	Transporters_In_Models	Experimental Subsystems	
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)	Transporters_In_Models	Experimental Subsystems	
Nucleoside permease nupC	Transporters_In_Models	Experimental Subsystems	
Phosphocarrier protein of PTS system	Transporters_In_Models	Experimental Subsystems	
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Transporters_In_Models	Experimental Subsystems	
PTS system, glucose-specific IIA component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
L-proline Glycine Betaine ABC transport ATP-binding protein proV (TC 3.A.1.12.1)	Transporters_In_Models	Experimental Subsystems	
PTS system, glucitol/sorbitol-specific IIC component	Transporters_In_Models	Experimental Subsystems	
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, glucitol/sorbitol-specific IIA component	Transporters_In_Models	Experimental Subsystems	
Formate hydrogenlyase subunit 7	Transporters_In_Models	Experimental Subsystems	
Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit	Transporters_In_Models	Experimental Subsystems	
Formate hydrogenlyase subunit 6	Transporters_In_Models	Experimental Subsystems	
Formate hydrogenlyase subunit 5	Transporters_In_Models	Experimental Subsystems	
Formate hydrogenlyase subunit 4	Transporters_In_Models	Experimental Subsystems	
Formate hydrogenlyase subunit 3	Transporters_In_Models	Experimental Subsystems	
Formate hydrogenlyase subunit 2	Transporters_In_Models	Experimental Subsystems	
D-glucarate permease	Transporters_In_Models	Experimental Subsystems	
Serine transporter	Transporters_In_Models	Experimental Subsystems	
Thiol:disulfide interchange protein DsbC	Transporters_In_Models	Experimental Subsystems	
Nucleoside permease nupG	Transporters_In_Models	Experimental Subsystems	
Glycolate permease	Transporters_In_Models	Experimental Subsystems	
Low-affinity inorganic phosphate transporter	Transporters_In_Models	Experimental Subsystems	
Biopolymer transport protein ExbD/TolR	Transporters_In_Models	Experimental Subsystems	
MotA/TolQ/ExbB proton channel family protein	Transporters_In_Models	Experimental Subsystems	
Zinc transporter zupT	Transporters_In_Models	Experimental Subsystems	
Hexuronate transporter	Transporters_In_Models	Experimental Subsystems	
L-threonine transporter, anaerobically inducible	Transporters_In_Models	Experimental Subsystems	
D-galactarate permease	Transporters_In_Models	Experimental Subsystems	
Tryptophan-specific transport protein	Transporters_In_Models	Experimental Subsystems	
RND efflux system, inner membrane transporter CmeB	Transporters_In_Models	Experimental Subsystems	
Trk system potassium uptake protein trkA	Transporters_In_Models	Experimental Subsystems	
Glutathione-regulated potassium-efflux system protein kefB	Transporters_In_Models	Experimental Subsystems	
Nitrite transporter NirC	Transporters_In_Models	Experimental Subsystems	
High-affinity gluconate transporter GntT	Transporters_In_Models	Experimental Subsystems	
SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)	Transporters_In_Models	Experimental Subsystems	
SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)	Transporters_In_Models	Experimental Subsystems	
SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)	Transporters_In_Models	Experimental Subsystems	
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)	Transporters_In_Models	Experimental Subsystems	
Branched-chain amino acid transport ATP-binding protein livF (TC 3.A.1.4.1)	Transporters_In_Models	Experimental Subsystems	
Branched-chain amino acid transport ATP-binding protein livG (TC 3.A.1.4.1)	Transporters_In_Models	Experimental Subsystems	
Branched-chain amino acid transport system permease protein livM (TC 3.A.1.4.1)	Transporters_In_Models	Experimental Subsystems	
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)	Transporters_In_Models	Experimental Subsystems	
High-affinity leucine-specific transport system, periplasmic binding protein livK (TC 3.A.1.4.1)	Transporters_In_Models	Experimental Subsystems	
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)	Transporters_In_Models	Experimental Subsystems	
Nickel transport system permease protein nikB (TC 3.A.1.5.3)	Transporters_In_Models	Experimental Subsystems	
Nickel transport system permease protein nikC (TC 3.A.1.5.3)	Transporters_In_Models	Experimental Subsystems	
Nickel transport ATP-binding protein nikD (TC 3.A.1.5.3)	Transporters_In_Models	Experimental Subsystems	
Nickel transport ATP-binding protein nikE (TC 3.A.1.5.3)	Transporters_In_Models	Experimental Subsystems	
Dipeptide transport ATP-binding protein dppD (TC 3.A.1.5.2)	Transporters_In_Models	Experimental Subsystems	
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)	Transporters_In_Models	Experimental Subsystems	
Xylose ABC transporter, periplasmic xylose-binding protein XylF	Transporters_In_Models	Experimental Subsystems	
D-xylose transport ATP-binding protein XylG	Transporters_In_Models	Experimental Subsystems	
Xylose ABC transporter, permease protein XylH	Transporters_In_Models	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, small permease component	Transporters_In_Models	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, large permease component	Transporters_In_Models	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, periplasmic component	Transporters_In_Models	Experimental Subsystems	
PTS system, mannitol-specific IIA component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
L-lactate permease	Transporters_In_Models	Experimental Subsystems	
Low affinity tryptophan permease	Transporters_In_Models	Experimental Subsystems	
Phosphate transport ATP-binding protein pstB (TC 3.A.1.7.1)	Transporters_In_Models	Experimental Subsystems	
Phosphate transport system permease protein pstA (TC 3.A.1.7.1)	Transporters_In_Models	Experimental Subsystems	
Phosphate transport system permease protein pstC (TC 3.A.1.7.1)	Transporters_In_Models	Experimental Subsystems	
Phosphate ABC transporter, periplasmic phosphate-binding protein pstS (TC 3.A.1.7.1)	Transporters_In_Models	Experimental Subsystems	
ATP synthase epsilon chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase beta chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase gamma chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase alpha chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase delta chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase B chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase C chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase A chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
ATP synthase protein I	Transporters_In_Models	Experimental Subsystems	
Kup system potassium uptake protein	Transporters_In_Models	Experimental Subsystems	
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)	Transporters_In_Models	Experimental Subsystems	
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Transporters_In_Models	Experimental Subsystems	
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Transporters_In_Models	Experimental Subsystems	
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Transporters_In_Models	Experimental Subsystems	
Threonine efflux protein	Transporters_In_Models	Experimental Subsystems	
Periplasmic thiol:disulfide interchange protein DsbA	Transporters_In_Models	Experimental Subsystems	
Formate dehydrogenase O gamma subunit (EC 1.2.1.2)	Transporters_In_Models	Experimental Subsystems	
Formate dehydrogenase O beta subunit (EC 1.2.1.2)	Transporters_In_Models	Experimental Subsystems	
2-keto-3-deoxygluconate permease (KDG permease)	Transporters_In_Models	Experimental Subsystems	
Cobalt-zinc-cadmium resistance protein	Transporters_In_Models	Experimental Subsystems	
Glycerol uptake facilitator protein	Transporters_In_Models	Experimental Subsystems	
Outer membrane vitamin B12 receptor BtuB	Transporters_In_Models	Experimental Subsystems	
Maltose/maltodextrin ABC transporter, permease protein MalG	Transporters_In_Models	Experimental Subsystems	
Maltose/maltodextrin ABC transporter, permease protein MalF	Transporters_In_Models	Experimental Subsystems	
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE	Transporters_In_Models	Experimental Subsystems	
Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c552 precursor (EC 1.7.2.2)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c-type protein nrfB precursor	Transporters_In_Models	Experimental Subsystems	
NrfC protein	Transporters_In_Models	Experimental Subsystems	
NrfD protein	Transporters_In_Models	Experimental Subsystems	
C4-dicarboxylate transporter DcuB	Transporters_In_Models	Experimental Subsystems	
Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)	Transporters_In_Models	Experimental Subsystems	
Ascorbate-specific PTS system, EIIC component	Transporters_In_Models	Experimental Subsystems	
Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)	Transporters_In_Models	Experimental Subsystems	
D-serine/D-alanine/glycine transporter	Transporters_In_Models	Experimental Subsystems	
Magnesium transporting ATPase, P-type 1 (EC 3.6.3.2)	Transporters_In_Models	Experimental Subsystems	
Iron(III) dicitrate transport system permease protein fecD (TC 3.A.1.14.1)	Transporters_In_Models	Experimental Subsystems	
Iron(III) dicitrate transport system permease protein fecC (TC 3.A.1.14.1)	Transporters_In_Models	Experimental Subsystems	
Iron(III) dicitrate transport system, periplasmic iron-binding protein fecB (TC 3.A.1.14.1)	Transporters_In_Models	Experimental Subsystems	
Iron(III) dicitrate transport protein fecA precursor	Transporters_In_Models	Experimental Subsystems	
N-acetylneuraminic acid outer membrane channel protein NanC	Transporters_In_Models	Experimental Subsystems	
Fructuronate transporter GntP	Transporters_In_Models	Experimental Subsystems	
L-arabinose transport system permease protein (TC 3.A.1.2.2)	Transporters_In_Models	Experimental Subsystems	
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Transporters_In_Models	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Transporters_In_Models	Experimental Subsystems	
PTS system, cellobiose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Ferrous iron transport peroxidase EfeB	Transporters_In_Models	Experimental Subsystems	
Glycerol-3-phosphate transporter	Transporters_In_Models	Experimental Subsystems	
PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, beta-glucoside-specific IIC component	Transporters_In_Models	Experimental Subsystems	
PTS system, beta-glucoside-specific IIA component	Transporters_In_Models	Experimental Subsystems	
Uracil permease	Transporters_In_Models	Experimental Subsystems	
PTS system, trehalose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Magnesium and cobalt transport protein corA	Transporters_In_Models	Experimental Subsystems	
PTS system, mannitol-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, mannitol-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, cellobiose-specific IIA component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Ethanolamine permease	Transporters_In_Models	Experimental Subsystems	
Arabinose-proton symporter	Transporters_In_Models	Experimental Subsystems	
PTS system, fructose-specific IIA component	Transporters_In_Models	Experimental Subsystems	
PTS system, fructose-specific IIC component	Transporters_In_Models	Experimental Subsystems	
Proline/sodium symporter PutP (TC 2.A.21.2.1)	Transporters_In_Models	Experimental Subsystems	
Propionate/sodium symporter	Transporters_In_Models	Experimental Subsystems	
Manganese transport protein MntH	Transporters_In_Models	Experimental Subsystems	
Arsenic efflux pump protein	Transporters_In_Models	Experimental Subsystems	
PTS system, cellobiose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Cytosine/purine/uracil/thiamine/allantoin permease family protein	Transporters_In_Models	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIC component	Transporters_In_Models	Experimental Subsystems	
Transporter, LysE family	Transporters_In_Models	Experimental Subsystems	
Na+/H+ antiporter	Transporters_In_Models	Experimental Subsystems	
Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)	Transporters_In_Models	Experimental Subsystems	
Copper-translocating P-type ATPase (EC 3.6.3.4)	Transporters_In_Models	Experimental Subsystems	
Vitamin B12 ABC transporter, ATPase component BtuD	Transporters_In_Models	Experimental Subsystems	
Vitamin B12 ABC transporter, permease component BtuC	Transporters_In_Models	Experimental Subsystems	
Hydrogenase maturation protease (EC 3.4.24.-)	Transporters_In_Models	Experimental Subsystems	
Ferrous iron transport protein B	Transporters_In_Models	Experimental Subsystems	
Na+/H+ antiporter NhaA type	Transporters_In_Models	Experimental Subsystems	
PTS system, glucose-specific IIC component	Transporters_In_Models	Experimental Subsystems	
PTS system, glucose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, glucose-specific IIA component	Transporters_In_Models	Experimental Subsystems	
Multiple sugar ABC transporter, ATP-binding protein	Transporters_In_Models	Experimental Subsystems	
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA (TC 3.A.1.5.1)	Transporters_In_Models	Experimental Subsystems	
PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Probable pyrimidine nucleoside transport protein	Transporters_In_Models	Experimental Subsystems	
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
L-Proline/Glycine betaine transporter ProP	Transporters_In_Models	Experimental Subsystems	
Lysine-specific permease	Transporters_In_Models	Experimental Subsystems	
ATP synthase F0 sector subunit b	Transporters_In_Models	Experimental Subsystems	
ATP synthase F0 sector subunit c	Transporters_In_Models	Experimental Subsystems	
ATP synthase F0 sector subunit a	Transporters_In_Models	Experimental Subsystems	
PTS system, mannitol-specific IIA component	Transporters_In_Models	Experimental Subsystems	
Proton/sodium-glutamate symport protein	Transporters_In_Models	Experimental Subsystems	
Candidate zinc-binding lipoprotein ZinT	Transporters_In_Models	Experimental Subsystems	
Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)	Transporters_In_Models	Experimental Subsystems	
PTS system, mannose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, mannose-specific IIC component	Transporters_In_Models	Experimental Subsystems	
PTS system, mannose-specific IIA component	Transporters_In_Models	Experimental Subsystems	
Iron(III)-binding periplasmic protein sfuA	Transporters_In_Models	Experimental Subsystems	
PTS system hrsA EIIA component	Transporters_In_Models	Experimental Subsystems	
PTS system hrsA EIIB component	Transporters_In_Models	Experimental Subsystems	
PTS system hrsA permease IIC component	Transporters_In_Models	Experimental Subsystems	
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)	Transporters_In_Models	Experimental Subsystems	
Oligopeptide transport system permease protein oppC (TC 3.A.1.5.1)	Transporters_In_Models	Experimental Subsystems	
Oligopeptide transport ATP-binding protein oppD (TC 3.A.1.5.1)	Transporters_In_Models	Experimental Subsystems	
Oligopeptide transport ATP-binding protein oppF (TC 3.A.1.5.1)	Transporters_In_Models	Experimental Subsystems	
Ferric siderophore transport system, periplasmic binding protein TonB	Transporters_In_Models	Experimental Subsystems	
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein	Transporters_In_Models	Experimental Subsystems	
PTS system, sucrose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, sucrose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
homoserine/homoserine lactone efflux protein [KO:K05834]	Transporters_In_Models	Experimental Subsystems	
Potassium uptake protein TrkH	Transporters_In_Models	Experimental Subsystems	
D-allose ABC transporter, permease component	Transporters_In_Models	Experimental Subsystems	
D-allose ABC transporter, ATPase component	Transporters_In_Models	Experimental Subsystems	
D-allose ABC transporter, substrate-binding component	Transporters_In_Models	Experimental Subsystems	
C4-dicarboxylate transporter DcuA	Transporters_In_Models	Experimental Subsystems	
L-idonate, D-gluconate, 5-keto-D-gluconate transporter	Transporters_In_Models	Experimental Subsystems	
Ferrichrome transport ATP-binding protein fhuC (TC 3.A.1.14.3)	Transporters_In_Models	Experimental Subsystems	
Branched-chain amino acid transport system carrier protein	Transporters_In_Models	Experimental Subsystems	
Arsenical pump membrane protein	Transporters_In_Models	Experimental Subsystems	
Xanthine/uracil/thiamine/ascorbate permease family protein	Transporters_In_Models	Experimental Subsystems	
Arginine/ornithine antiporter ArcD	Transporters_In_Models	Experimental Subsystems	
PTS system, sucrose-specific IIB component (EC 2.7.1.69) / PTS system, sucrose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Outer membrane receptor for ferrienterochelin and colicins	Transporters_In_Models	Experimental Subsystems	
Na+/H+ antiporter NhaC	Transporters_In_Models	Experimental Subsystems	
Manganese ABC transporter, periplasmic-binding protein SitA	Transporters_In_Models	Experimental Subsystems	
Manganese ABC transporter, ATP-binding protein SitB	Transporters_In_Models	Experimental Subsystems	
Manganese ABC transporter, inner membrane permease protein SitC	Transporters_In_Models	Experimental Subsystems	
Manganese ABC transporter, inner membrane permease protein SitD	Transporters_In_Models	Experimental Subsystems	
Xanthine permease	Transporters_In_Models	Experimental Subsystems	
Amino acid permease	Transporters_In_Models	Experimental Subsystems	
Amino acid ABC transporter, periplasmic amino acid-binding protein	Transporters_In_Models	Experimental Subsystems	
Iron(III) dicitrate transport protein fecA	Transporters_In_Models	Experimental Subsystems	
RND efflux system, membrane fusion protein CmeA	Transporters_In_Models	Experimental Subsystems	
putative periplasmic binding transport protein	Transporters_In_Models	Experimental Subsystems	
ATPase component of general energizing module of ECF transporters	Transporters_In_Models	Experimental Subsystems	
Homolog of fucose/glucose/galactose permeases	Transporters_In_Models	Experimental Subsystems	
PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Probable Co/Zn/Cd efflux system membrane fusion protein	Transporters_In_Models	Experimental Subsystems	
multidrug-efflux transporter	Transporters_In_Models	Experimental Subsystems	
Nucleoside permease NupC	Transporters_In_Models	Experimental Subsystems	
Sulfate permease	Transporters_In_Models	Experimental Subsystems	
branched-chain amino acid transport	Transporters_In_Models	Experimental Subsystems	
Probable low-affinity inorganic phosphate transporter	Transporters_In_Models	Experimental Subsystems	
ABC transporter, ATP-binding protein	Transporters_In_Models	Experimental Subsystems	
Urea channel UreI	Transporters_In_Models	Experimental Subsystems	
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Transporters_In_Models	Experimental Subsystems	
nitrite extrusion protein (narK)	Transporters_In_Models	Experimental Subsystems	
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)	Transporters_In_Models	Experimental Subsystems	
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)	Transporters_In_Models	Experimental Subsystems	
Quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit	Transporters_In_Models	Experimental Subsystems	
Anaerobic C4-dicarboxylate transporter DcuB	Transporters_In_Models	Experimental Subsystems	
osmoprotection protein (proWX)	Transporters_In_Models	Experimental Subsystems	
iron(III) dicitrate ABC transporter, ATP-binding protein (fecE)	Transporters_In_Models	Experimental Subsystems	
iron(III) dicitrate ABC transporter, permease protein (fecD)	Transporters_In_Models	Experimental Subsystems	
proline/betaine transporter (proP)	Transporters_In_Models	Experimental Subsystems	
D-alanine glycine permease (dagA)	Transporters_In_Models	Experimental Subsystems	
amino acid permease (rocE)	Transporters_In_Models	Experimental Subsystems	
HoxN/HupN/NixA family nickel/cobalt transporter	Transporters_In_Models	Experimental Subsystems	
Alpha-ketoglutarate permease	Transporters_In_Models	Experimental Subsystems	
ATP synthase B' chain (EC 3.6.3.14)	Transporters_In_Models	Experimental Subsystems	
glutamine ABC transporter, permease protein (glnP)	Transporters_In_Models	Experimental Subsystems	
glutamine ABC transporter, ATP-binding protein (glnQ)	Transporters_In_Models	Experimental Subsystems	
glutamine ABC transporter, periplasmic glutamine-binding protein (glnH)	Transporters_In_Models	Experimental Subsystems	
NA+/H+ antiporter (napA)	Transporters_In_Models	Experimental Subsystems	
Cytochrome C553 (soluble cytochrome f)	Transporters_In_Models	Experimental Subsystems	
Predicted thiamin transporter PnuT	Transporters_In_Models	Experimental Subsystems	
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Transporters_In_Models	Experimental Subsystems	
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	Transporters_In_Models	Experimental Subsystems	
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Transporters_In_Models	Experimental Subsystems	
Cytochrome c oxidase, subunit IV (EC 1.9.3.1)	Transporters_In_Models	Experimental Subsystems	
PTS system, fructose-specific IID component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Succinate dehydrogenase cytochrome b558 subunit	Transporters_In_Models	Experimental Subsystems	
Putative symporter yjcG	Transporters_In_Models	Experimental Subsystems	
AA3-600 quinol oxidase subunit II	Transporters_In_Models	Experimental Subsystems	
AA3-600 quinol oxidase subunit I	Transporters_In_Models	Experimental Subsystems	
AA3-600 quinol oxidase subunit IIII	Transporters_In_Models	Experimental Subsystems	
AA3-600 quinol oxidase subunit IV	Transporters_In_Models	Experimental Subsystems	
Formate/nitrite family of transporters	Transporters_In_Models	Experimental Subsystems	
Gluconate permease, Bsu4004 homolog	Transporters_In_Models	Experimental Subsystems	
component of iron-uptake system	Transporters_In_Models	Experimental Subsystems	
xanthine permease	Transporters_In_Models	Experimental Subsystems	
Ca(2+) Citrate symporter (TC 2.A.11.1.2)	Transporters_In_Models	Experimental Subsystems	
Arsenical-resistance protein ACR3	Transporters_In_Models	Experimental Subsystems	
Menaquinone-cytochrome C reductase iron-sulfur subunit	Transporters_In_Models	Experimental Subsystems	
Menaquinone-cytochrome c reductase, cytochrome B subunit	Transporters_In_Models	Experimental Subsystems	
Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit	Transporters_In_Models	Experimental Subsystems	
gamma-aminobutyrate (GABA) permease	Transporters_In_Models	Experimental Subsystems	
catalyses ATP-dependent electrogenic Na+ extrusion without mechanistically coupled H+ or K+ uptake	Transporters_In_Models	Experimental Subsystems	
PTS system, lichenan-, cellobiose-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32)	Transporters_In_Models	Experimental Subsystems	
Ferrichrome transport system permease protein fhuG	Transporters_In_Models	Experimental Subsystems	
Sodium-dependent phosphate transporter	Transporters_In_Models	Experimental Subsystems	
amino acid ABC transporter, amino acid-binding protein	Transporters_In_Models	Experimental Subsystems	
amino acid ABC transporter, permease protein	Transporters_In_Models	Experimental Subsystems	
ATP-binding protein	Transporters_In_Models	Experimental Subsystems	
Malate Na(+) symporter	Transporters_In_Models	Experimental Subsystems	
amino acid carrier protein	Transporters_In_Models	Experimental Subsystems	
Mg(2+) Citrate transporter (TC 2.A.11.1.1)	Transporters_In_Models	Experimental Subsystems	
Ferrichrome-binding protein	Transporters_In_Models	Experimental Subsystems	
Alpha-arabinosides ABC transport system, permease protein AraN	Transporters_In_Models	Experimental Subsystems	
Alpha-arabinosides ABC transport system, permease protein AraP	Transporters_In_Models	Experimental Subsystems	
Alpha-arabinosides ABC transport system, permease protein AraQ	Transporters_In_Models	Experimental Subsystems	
Glycine betaine transporter OpuD	Transporters_In_Models	Experimental Subsystems	
potassium uptake	Transporters_In_Models	Experimental Subsystems	
C4-dicarboxylate transport protein	Transporters_In_Models	Experimental Subsystems	
Citrate transporter	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit G (TC 2.A.63.1.2)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.2)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.2)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.2)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.2)	Transporters_In_Models	Experimental Subsystems	
Chromate transport protein	Transporters_In_Models	Experimental Subsystems	
L-Malate Citrate symporter (TC 2.A.24.2.4)	Transporters_In_Models	Experimental Subsystems	
Purine-cytosine permease	Transporters_In_Models	Experimental Subsystems	
Multiple sugar ABC transporter, membrane-spanning permease protein MsmG	Transporters_In_Models	Experimental Subsystems	
Multiple sugar ABC transporter, membrane-spanning permease protein MsmF	Transporters_In_Models	Experimental Subsystems	
Multiple sugar ABC transporter, substrate-binding protein	Transporters_In_Models	Experimental Subsystems	
Choline ABC transport system, ATP-binding protein OpuBA	Transporters_In_Models	Experimental Subsystems	
Choline ABC transport system, permease protein OpuBB	Transporters_In_Models	Experimental Subsystems	
Choline ABC transport system, choline-binding protein OpuBC	Transporters_In_Models	Experimental Subsystems	
Choline ABC transport system, permease protein OpuBD	Transporters_In_Models	Experimental Subsystems	
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA	Transporters_In_Models	Experimental Subsystems	
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	Transporters_In_Models	Experimental Subsystems	
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	Transporters_In_Models	Experimental Subsystems	
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD	Transporters_In_Models	Experimental Subsystems	
Sodium/proline symporter	Transporters_In_Models	Experimental Subsystems	
amino acid permease	Transporters_In_Models	Experimental Subsystems	
Sodium/glutamine symporter glnT	Transporters_In_Models	Experimental Subsystems	
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component	Transporters_In_Models	Experimental Subsystems	
Predicted rhamnose oligosaccharide ABC transport system, permease component 2	Transporters_In_Models	Experimental Subsystems	
Predicted rhamnose oligosaccharide ABC transport system, permease component	Transporters_In_Models	Experimental Subsystems	
2-oxoglutarate/malate translocator	Transporters_In_Models	Experimental Subsystems	
Heme ABC type transporter HtsABC, heme-binding protein	Transporters_In_Models	Experimental Subsystems	
Heme ABC type transporter HtsABC, permease protein HtsB	Transporters_In_Models	Experimental Subsystems	
Heme ABC type transporter HtsABC, permease protein HtsC	Transporters_In_Models	Experimental Subsystems	
sodium/hydrogen exchanger family protein	Transporters_In_Models	Experimental Subsystems	
Glucose/mannose:H+ symporter GlcP	Transporters_In_Models	Experimental Subsystems	
Magnesium transporter	Transporters_In_Models	Experimental Subsystems	
Potassium uptake protein, integral membrane component, KtrD	Transporters_In_Models	Experimental Subsystems	
Sulfate permease, Pit-type	Transporters_In_Models	Experimental Subsystems	
cation-transporting ATPase, E1-E2 family	Transporters_In_Models	Experimental Subsystems	
Putative transporter yoaB	Transporters_In_Models	Experimental Subsystems	
Sodium-dependent transporter	Transporters_In_Models	Experimental Subsystems	
Na+/solute symporter	Transporters_In_Models	Experimental Subsystems	
sodium/alanine symporter family protein	Transporters_In_Models	Experimental Subsystems	
Probable amino-acid ABC transporter permease protein ytmM	Transporters_In_Models	Experimental Subsystems	
amino acid permease family protein	Transporters_In_Models	Experimental Subsystems	
YTRC	Transporters_In_Models	Experimental Subsystems	
YTRD	Transporters_In_Models	Experimental Subsystems	
ABC transporter, permease protein	Transporters_In_Models	Experimental Subsystems	
Trk system potassium uptake protein TrkA	Transporters_In_Models	Experimental Subsystems	
Potassium uptake protein, integral membrane component, KtrB	Transporters_In_Models	Experimental Subsystems	
Predicted molybdate-responsive regulator YvgK in bacilli	Transporters_In_Models	Experimental Subsystems	
Copper(I) chaperone copZ	Transporters_In_Models	Experimental Subsystems	
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	Transporters_In_Models	Experimental Subsystems	
PTS system, fructose-specific IIA component (EC 2.7.1.69) / PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Transporters_In_Models	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Transmembrane component of general energizing module of ECF transporters	Transporters_In_Models	Experimental Subsystems	
PTS system, glucose-specific IIC component (EC 2.7.1.69) / PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIA component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Sodium/glutamate symporter	Transporters_In_Models	Experimental Subsystems	
Na/Pi cotransporter II-related protein	Transporters_In_Models	Experimental Subsystems	
formate/nitrite transporter family protein	Transporters_In_Models	Experimental Subsystems	
Pyrimidine nucleoside transport protein	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.3)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.3)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit D (TC 2.A.63.1.3)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit E (TC 2.A.63.1.3)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.3)	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit G (TC 2.A.63.1.3)	Transporters_In_Models	Experimental Subsystems	
Pyrimidine nucleoside transporter	Transporters_In_Models	Experimental Subsystems	
Choline transporter, permease protein	Transporters_In_Models	Experimental Subsystems	
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.3)	Transporters_In_Models	Experimental Subsystems	
quinol oxidase polypeptide IV QoxD (EC:1.9.3.-)	Transporters_In_Models	Experimental Subsystems	
quinol oxidase polypeptide III QoxC (EC:1.9.3.-)	Transporters_In_Models	Experimental Subsystems	
quinol oxidase polypeptide I QoxB (EC:1.9.3.-)	Transporters_In_Models	Experimental Subsystems	
quinol oxidase polypeptide II QoxA (EC:1.9.3.-)	Transporters_In_Models	Experimental Subsystems	
Glutamate ABC transporter, periplasmic glutamine-binding protein	Transporters_In_Models	Experimental Subsystems	
ammonium transporter family protein	Transporters_In_Models	Experimental Subsystems	
PTS system, lactose-specific IIB component (EC 2.7.1.69) / PTS system, lactose-specific IIC component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
PTS system, lactose-specific IIA component (EC 2.7.1.69)	Transporters_In_Models	Experimental Subsystems	
Eukaryotic-type low-affinity urea transporter	Transporters_In_Models	Experimental Subsystems	
Methionine transporter MetT	Transporters_In_Models	Experimental Subsystems	
Magnesium citrate secondary transporter	Transporters_In_Models	Experimental Subsystems	
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter	Transporters_In_Models	Experimental Subsystems	
2-oxoglutarate/malate translocator-like protein	Transporters_In_Models	Experimental Subsystems	
Methicillin resistance regulatory sensor-transducer MecR1, truncated	Staph_kathyscats	Experimental Subsystems	
tRNA dimethylallyltransferase (EC 2.5.1.75)	MiaA_RpoS	Experimental Subsystems	
RNA polymerase sigma factor RpoS	MiaA_RpoS	Experimental Subsystems	
Transfer-messenger RNA (tmRNA) involved in trans-translation	MiaA_RpoS	Experimental Subsystems	
tmRNA-binding protein SmpB	MiaA_RpoS	Experimental Subsystems	
RNA-binding protein Hfq	MiaA_RpoS	Experimental Subsystems	
RNA polymerase sigma factor SigB	MiaA_RpoS	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	Khodge314_Isoleucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Ketol-acid reductoisomerase (EC 1.1.1.86)	Khodge314_Isoleucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Dihydroxy-acid dehydratase (EC 4.2.1.9)	Khodge314_Isoleucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Threonine dehydratase, catabolic (EC 4.3.1.19)	Khodge314_Isoleucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Khodge314_Isoleucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase large subunit (EC 2.2.1.6)	Khodge314_Isoleucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
RidA	Khodge314_Isoleucine_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Benzoate-CoA ligase (EC 6.2.1.25)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Shikimate kinase II (EC 2.7.1.71)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
4-hydroxybenzoyl-CoA reductase, beta subunit (EC 1.3.99.20)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
4-hydroxybenzoyl-CoA reductase, gamma subunit (EC 1.3.99.20)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoate transport, ATP binding protein	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoate transport, ATPase component	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoate transport, extracellular ligand-binding receptor	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoate transport, inner-membrane translocator	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoate transport, inner-membrane translocator precursor	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoyl-CoA oxygenase component A	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoyl-CoA oxygenase component B	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
P-hydroxylaminobenzoate lyase	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Regulatory protein of benzoate catabolism	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Shikimate kinase I (EC 2.7.1.71)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
benzoate degradation ring-cleavage hydrolase	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Putative Acyl-CoA thiolase	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
3-hydroxyacyl-CoA dehydrogenase (PaaH) (EC 1.1.1.157)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
4-oxalocrotonate decarboxylase (EC 4.1.1.77)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoate transport, inner membrane transport component	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Hydroxybenzoyl-CoA reductase subunit	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
hydroxybenzoate permease	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Beta-ketoadipyl CoA thiolase (EC 2.3.1.9)	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Benzoate transport related protein	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Predicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase	Benzoate_transport_and_degradation_cluster	Metabolism of Aromatic Compounds	
Serine hydroxymethyltransferase (EC 2.1.2.1)	Glycine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
L-threonine 3-dehydrogenase (EC 1.1.1.103)	Glycine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	Glycine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine riboswitch	Glycine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
Low-specificity L-threonine aldolase (EC 4.1.2.48)	Glycine_Biosynthesis	Amino Acids and Derivatives	Alanine, serine, and glycine
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	5-FCL-like_Experimental	Experimental Subsystems	
MTHFR (MetF)-like	5-FCL-like_Experimental	Experimental Subsystems	
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	5-FCL-like_Experimental	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	5-FCL-like_Experimental	Experimental Subsystems	
Tetrahydromethanopterin-dependent serine hydroxymethyltransferase	5-FCL-like_Experimental	Experimental Subsystems	
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	5-FCL-like_Experimental	Experimental Subsystems	
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	5-FCL-like_Experimental	Experimental Subsystems	
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	5-FCL-like_Experimental	Experimental Subsystems	
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	5-FCL-like_Experimental	Experimental Subsystems	
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	5-FCL-like_Experimental	Experimental Subsystems	
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	5-FCL-like_Experimental	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	5-FCL-like_Experimental	Experimental Subsystems	
Alternative dihydrofolate reductase 2	5-FCL-like_Experimental	Experimental Subsystems	
Glutamate formiminotransferase (EC 2.1.2.5)	5-FCL-like_Experimental	Experimental Subsystems	
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	5-FCL-like_Experimental	Experimental Subsystems	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
MTHFR (MetF)-like	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Serine hydroxymethyltransferase (EC 2.1.2.1)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Tetrahydromethanopterin-dependent serine hydroxymethyltransferase	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Substrate-specific component ThiW of predicted thiazole ECF transporter	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thiamine-monophosphate kinase (EC 2.7.4.16)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
YjbQ (alternate ThiE)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alcohol dehydrogenase (EC 1.1.1.1)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate reductase (EC 1.5.1.3)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative dihydrofolate reductase 2	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutamate formiminotransferase (EC 2.1.2.5)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thiamine kinase (EC 2.7.1.89)	5-FCL-like_protein	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
L-fuculose phosphate aldolase (EC 4.1.2.17)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
Dihydroneopterin aldolase (EC 4.1.2.25)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
Deoxyribose-phosphate aldolase (EC 4.1.2.4)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
Sphingosine-1-phosphate lyase (EC 4.1.2.27)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)	EC_4.1.2.-_Aldehyde-lyases	Miscellaneous	
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxyphenylacetate 3-monooxygenase, reductase component (EC 1.6.8.-)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Homoprotocatechuate degradative operon repressor	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Transcriptional activator of 4-hydroxyphenylacetate 3-monooxygenase operon, XylS/AraC family	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)	4-Hydroxyphenylacetic_acid_catabolic_pathway	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate dioxygenase reductase	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aromatic amino acid transport protein AroP	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Homoprotocatechuate degradative operon repressor	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Kynurenine formamidase, bacterial (EC 3.5.1.9)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Putative fumarylacetoacetate (FAA) hydrolase	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan 2,3-dioxygenase (EC 1.13.11.11)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan 2-monooxygenase (EC 1.13.12.3)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phenylalanine hydroxylase transcriptional activator PhhR	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate dioxygenase large subunit	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate dioxygenase small subunit	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indoleacetamide hydrolase (EC 3.5.1.-)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophanase (EC 4.1.99.1)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Putative 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase oxidoreductase protein (EC 1.2.1.60)	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phenylalanine-specific permease	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Predicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aromatic ring-opening dioxygenase	Aromatic_amino_acid_degradation	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase (EC 2.7.1.24)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Substrate-specific component PanT of predicted pantothenate ECF transporter	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Aspartate 1-decarboxylase (EC 4.1.1.11)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate--beta-alanine ligase (EC 6.3.2.1)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Ketol-acid reductoisomerase (EC 1.1.1.86)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
2-dehydropantoate 2-reductase (EC 1.1.1.169)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase (EC 2.7.1.33)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
COG0385 sodium-dependent transporter	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate kinase, archaeal (EC 2.7.1.-)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenate synthetase, archaeal	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	dcernst_CoA_Salvage	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Transposase for insertion sequence-like element IS431mec	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein 1A/1B (PBP1)	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin binding protein PBP4	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
tRNA-dependent lipid II--glycine ligase (FmhB)	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemA, factor essential for methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemB, factor involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemC, factor involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemD, factor involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
LytH protein involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrA protein involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrB protein involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtA protein involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtC (MrpF) protein involved in methicillin resistance	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhA protein of FemAB family	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhC protein of FemAB family	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanyl transfer protein DltB	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Poly(glycerophosphate chain) D-alanine transfer protein DltD	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RNA polymerase sigma factor SigB	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance repressor MecI	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase regulatory sensor-transducer BlaR1	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase repressor BlaI	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HTH domain protein SA1665, binds to mecA promoter region	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtB (Mrp) protein involved in methicillin resistance and cell wall biosynthesis	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1, truncated	Monika_MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Thaxtomin synthetase A; nonribosomal peptide synthetase	ThaxtominA_biosynthesis	Experimental Subsystems	
Thaxtomin synthetase B; nonribosomal peptide synthetase	ThaxtominA_biosynthesis	Experimental Subsystems	
cytochrome P450 monooxygenase for post-cyclization hydroxylation reaction in thaxtomin biosynthesis	ThaxtominA_biosynthesis	Experimental Subsystems	
MbtH protein	ThaxtominA_biosynthesis	Experimental Subsystems	
Nitric oxide synthase oxygenase (EC 1.-.-.-)	ThaxtominA_biosynthesis	Experimental Subsystems	
cytochrome P450 for nitration of L-tryptophan in thaxtomin biosynthesis	ThaxtominA_biosynthesis	Experimental Subsystems	
AraC/XylS transcriptional regulator of the thaxtomin biosynthesis genes	ThaxtominA_biosynthesis	Experimental Subsystems	
Malonyl-CoA Synthetase, MatB (EC 2.3.1.85)	Malonate_Degredation_	Experimental Subsystems	
Malonyl-CoA decarboxylase (EC 4.1.1.9)	Malonate_Degredation_	Experimental Subsystems	
Dicarboxylate carrier protein, MatC malonate transporter	Malonate_Degredation_	Experimental Subsystems	
Methylmalonyl-CoA synthetase, MatB	Malonate_Degredation_	Experimental Subsystems	
Ribosyl nicotinamide transporter, PnuC-like	AOU_COG3236		
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	AOU_COG3236		
GTP cyclohydrolase II (EC 3.5.4.25)	AOU_COG3236		
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	AOU_COG3236		
ATP-dependent helicase DinG/Rad3	AOU_COG3236		
NadR transcriptional regulator	AOU_COG3236		
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	AOU_COG3236		
Ribosylnicotinamide kinase (EC 2.7.1.22)	AOU_COG3236		
Anthranilate phosphoribosyltransferase (EC 2.4.2.18) like	AOU_COG3236		
Peptide ABC transporter, ATP-binding protein	AOU_COG3236		
RNA:NAD 2'-phosphotransferase	AOU_COG3236		
Uncharacterized protein COG3236	AOU_COG3236		
Possible alpha/beta hydrolase superfamily, sll0553 homolog	AOU_COG3236		
Vitamin B12 ABC transporter, ATPase component BtuD	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Queuosine Biosynthesis QueC ATPase	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
AMP nucleosidase (EC 3.2.2.4)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii] COG2102: Predicted ATPases of PP-loop superfamily IPR002761: Domain of unknown function DUF71: B12 cluster	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Choline kinase (EC 2.7.1.32)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duf71: Diphthamide synthesis Dph6	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG01199686: hypothetical protein	Cobalamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Malonate decarboxylase alpha subunit	Malonate_	Carbohydrates	Organic acids
Malonate decarboxylase beta subunit	Malonate_	Carbohydrates	Organic acids
Malonate decarboxylase gamma subunit	Malonate_	Carbohydrates	Organic acids
Malonate decarboxylase delta subunit	Malonate_	Carbohydrates	Organic acids
Malonate transporter, MadL subunit	Malonate_	Carbohydrates	Organic acids
Malonate transporter, MadM subunit	Malonate_	Carbohydrates	Organic acids
Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Malonate_	Carbohydrates	Organic acids
Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Malonate_	Carbohydrates	Organic acids
Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)	Malonate_	Carbohydrates	Organic acids
Malonate utilization transcriptional regulator	Malonate_	Carbohydrates	Organic acids
Probable low-affinity inorganic phosphate transporter	DDP1_PUTATIVE_MIHIR	Experimental Subsystems	
ATP-dependent helicase HrpB	DDP1_PUTATIVE_MIHIR	Experimental Subsystems	
DDP1 homolog	DDP1_PUTATIVE_MIHIR	Experimental Subsystems	
Ornithine carbamoyltransferase	DDP1_PUTATIVE_MIHIR	Experimental Subsystems	
Formylmethanofuran dehydrogenase subunit A (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) subunit B (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) subunit D (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) operon gene F (polyferredoxin)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) operon gene G	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) operon gene H	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase (EC 2.3.1.101)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
F420-dependent methylenetetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase (EC 1.5.99.11)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit B (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit F (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H (EC 2.1.1.86)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit X	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase associated protein	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase I alpha subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase II alpha subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase I beta subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase II beta subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase I gamma subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase II gamma subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase operon protein C	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase operon protein D	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (tungsten) subunit C (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase alpha subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase beta subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methyl coenzyme M reductase gamma subunit (EC 2.8.4.1)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase subunit B (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) subunit B (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase subunit C (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) subunit C (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase subunit D (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) subunit D (EC 1.2.99.5)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) operon gene E	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) operon gene F (polyferredoxin)	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Formylmethanofuran dehydrogenase (molybdenum) operon gene G	millsd_methanogensis	Carbohydrates	One-carbon Metabolism
Methicillin resistance regulatory sensor-transducer MecR1, truncated	MRSA_analysis_Oli	Virulence, Disease and Defense	
Methicillin resistance repressor MecI	MRSA_analysis_Oli	Virulence, Disease and Defense	
FIG01108399: hypothetical protein	MRSA_analysis_Oli	Virulence, Disease and Defense	
Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)	MRSA_analysis_Oli	Virulence, Disease and Defense	
ABC transporter, permease protein	MRSA_analysis_Oli	Virulence, Disease and Defense	
FIG01108800: hypothetical protein	MRSA_analysis_Oli	Virulence, Disease and Defense	
ABC transporter, ATP-binding protein	MRSA_analysis_Oli	Virulence, Disease and Defense	
Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)	MRSA_analysis_Oli	Virulence, Disease and Defense	
Exotoxin 6	MRSA_analysis_Oli	Virulence, Disease and Defense	
Exotoxin 7	MRSA_analysis_Oli	Virulence, Disease and Defense	
Heme ABC type transporter HtsABC, heme-binding protein	MRSA_analysis_Oli	Virulence, Disease and Defense	
Poly(glycerol-phosphate) alpha-glucosyltransferase (EC 2.4.1.52)	MRSA_analysis_Oli	Virulence, Disease and Defense	
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	MRSA_analysis_Oli	Virulence, Disease and Defense	
Heat shock protein 60 family chaperone GroEL	MRSA_analysis_Oli	Virulence, Disease and Defense	
Putative DNA helicase, superantigen-encoding pathogenicity islands SaPI	MRSA_analysis_Oli	Virulence, Disease and Defense	
Superantigen enterotoxin SEB	MRSA_analysis_Oli	Virulence, Disease and Defense	
Vitamin B12 ABC transporter, ATPase component BtuD	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	Cobalamin_Dh	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	Attachment-related_pathway	Experimental Subsystems	
FIG00945285: putative DNA-binding protein	Attachment-related_pathway	Experimental Subsystems	
FAD-dependent oxidoreductase	Attachment-related_pathway	Experimental Subsystems	
putative membrane prootein	Attachment-related_pathway	Experimental Subsystems	
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Attachment-related_pathway	Experimental Subsystems	
Inositol-1-monophosphatase (EC 3.1.3.25)	Attachment-related_pathway	Experimental Subsystems	
FIG01125301: hypothetical protein	Attachment-related_pathway	Experimental Subsystems	
two-component sensor (kinase)	Attachment-related_pathway	Experimental Subsystems	
two-component system response regulator	Attachment-related_pathway	Experimental Subsystems	
Two-component response regulator	Attachment-related_pathway	Experimental Subsystems	
FIG01121218: hypothetical protein	Attachment-related_pathway	Experimental Subsystems	
FIG01121904: hypothetical protein	Attachment-related_pathway	Experimental Subsystems	
FIG01105974: Probable conserved alanine rich transmembrane protein	Attachment-related_pathway	Experimental Subsystems	
FIG01123415: hypothetical protein	Attachment-related_pathway	Experimental Subsystems	
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Attachment-related_pathway	Experimental Subsystems	
FIG01122115: hypothetical protein	Attachment-related_pathway	Experimental Subsystems	
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Attachment-related_pathway	Experimental Subsystems	
DNA-binding response regulator KdpE	Attachment-related_pathway	Experimental Subsystems	
Rhodanese-related sulfurtransferase	Attachment-related_pathway	Experimental Subsystems	
probable L-gulonolactone oxidase( EC:1.1.3.- )	Attachment-related_pathway	Experimental Subsystems	
RNA polymerase sigma factor SigS	S._aureus_SigS	Experimental Subsystems	
Hypothetical protein SAV1778	S._aureus_SigS	Experimental Subsystems	
Competence transcription factor	S._aureus_SigS	Experimental Subsystems	
Lipoate-protein ligase A	S._aureus_SigS	Experimental Subsystems	
ComK-like	S._aureus_SigS	Experimental Subsystems	
Competence/damage-inducible protein CinA	S._aureus_SigS	Experimental Subsystems	
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	Attachment-related_pathway2_test	Experimental Subsystems	
FIG00945285: putative DNA-binding protein	Attachment-related_pathway2_test	Experimental Subsystems	
FAD-dependent oxidoreductase	Attachment-related_pathway2_test	Experimental Subsystems	
putative membrane prootein	Attachment-related_pathway2_test	Experimental Subsystems	
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Attachment-related_pathway2_test	Experimental Subsystems	
Inositol-1-monophosphatase (EC 3.1.3.25)	Attachment-related_pathway2_test	Experimental Subsystems	
FIG01125301: hypothetical protein	Attachment-related_pathway2_test	Experimental Subsystems	
two-component sensor (kinase)	Attachment-related_pathway2_test	Experimental Subsystems	
two-component system response regulator	Attachment-related_pathway2_test	Experimental Subsystems	
Two-component response regulator	Attachment-related_pathway2_test	Experimental Subsystems	
FIG01121218: hypothetical protein	Attachment-related_pathway2_test	Experimental Subsystems	
FIG01121904: hypothetical protein	Attachment-related_pathway2_test	Experimental Subsystems	
FIG01105974: Probable conserved alanine rich transmembrane protein	Attachment-related_pathway2_test	Experimental Subsystems	
FIG01123415: hypothetical protein	Attachment-related_pathway2_test	Experimental Subsystems	
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Attachment-related_pathway2_test	Experimental Subsystems	
FIG01122115: hypothetical protein	Attachment-related_pathway2_test	Experimental Subsystems	
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Attachment-related_pathway2_test	Experimental Subsystems	
DNA-binding response regulator KdpE	Attachment-related_pathway2_test	Experimental Subsystems	
Rhodanese-related sulfurtransferase	Attachment-related_pathway2_test	Experimental Subsystems	
probable L-gulonolactone oxidase( EC:1.1.3.- )	Attachment-related_pathway2_test	Experimental Subsystems	
FIG00818241: hypothetical protein	Attachment-related_pathway2_test	Experimental Subsystems	
FIG01029307: hypothetical protein	Attachment-related_pathway2_test	Experimental Subsystems	
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
Conserved hypothetical integral membrane protein YrbE A Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
Conserved hypothetical integral membrane protein YrbE B Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE family protein of Mce A Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE family protein of Mce B Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE family protein of Mce C Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE family protein of Mce D Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE family protein of Mce E Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE family protein of Mce F Subgroup	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE-family protein Mce1A	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
MCE-family protein Mce1B	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
HTH-type transcriptional regulator Mce2R, Rv0586	Mammalian_cell_entry_genes_(MCE)_in_Streptomyces	Virulence	
FIG002003: Protein YdjA	ydjA	Experimental Subsystems	
YciK-like oxidoreductase	YciK	Experimental Subsystems	
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	YciK	Experimental Subsystems	
Possible protease sohB (EC 3.4.21.-)	YciK	Experimental Subsystems	
Propanediol utilization transcriptional activator	YciK	Experimental Subsystems	
Nicotinate dehydrogenase, large molybdopterin subunit (EC 1.17.1.5)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Nicotinate dehydrogenase, medium molybdopterin subunit (EC 1.17.1.5)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Nicotinate dehydrogenase, small FeS subunit (EC 1.17.1.5)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Nicotinate dehydrogenase, FAD-subunit (EC 1.17.1.5)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
6-hydroxynicotinate reductase (EC 1.3.7.1)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Enamidase (EC 3.5.2.18)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
(S)-2-(hydroxymethyl)glutarate dehydrogenase (EC 1.1.1.291)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
(S)-2-(hydroxymethyl)glutarate dehydratase	Nicotinate_catabolism,_anaerobic	Miscellaneous	
2-methyleneglutarate mutase (EC 5.4.99.4)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
3-methylitaconate isomerase (EC 5.3.3.6)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Dimethylmaleate hydratase, large subunit (EC 4.2.1.85)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Dimethylmaleate hydratase, small subunit (EC 4.2.1.85)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
2,3-dimethylmalate lyase (EC 4.1.3.32)	Nicotinate_catabolism,_anaerobic	Miscellaneous	
FIG00846075: hypothetical protein	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Predicted nicotinate-regulated transporter BH3254	Nicotinate_catabolism,_anaerobic	Miscellaneous	
FIG00845751: hypothetical protein	Nicotinate_catabolism,_anaerobic	Miscellaneous	
FIG00440100: hypothetical protein	Nicotinate_catabolism,_anaerobic	Miscellaneous	
Alanine racemase (EC 5.1.1.1)	Amino_acid_racemase	Amino Acids and Derivatives	
Glutamate racemase (EC 5.1.1.3)	Amino_acid_racemase	Amino Acids and Derivatives	
Diaminopimelate epimerase (EC 5.1.1.7)	Amino_acid_racemase	Amino Acids and Derivatives	
Cryptic alanine racemase	Amino_acid_racemase	Amino Acids and Derivatives	
Aspartate racemase (EC 5.1.1.13)	Amino_acid_racemase	Amino Acids and Derivatives	
4-hydroxyproline epimerase (EC 5.1.1.8)	Amino_acid_racemase	Amino Acids and Derivatives	
2-methylaconitate cis-trans isomerase	Amino_acid_racemase	Amino Acids and Derivatives	
2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Amino_acid_racemase	Amino Acids and Derivatives	
Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues]	Amino_acid_racemase	Amino Acids and Derivatives	
Amino acid racemase RacX	Amino_acid_racemase	Amino Acids and Derivatives	
Proline racemase (EC 5.1.1.4)	Amino_acid_racemase	Amino Acids and Derivatives	
Propionate--CoA ligase (EC 6.2.1.17)	Methylcitrate_cycle	Carbohydrates	Organic acids
2-methylcitrate synthase (EC 2.3.3.5)	Methylcitrate_cycle	Carbohydrates	Organic acids
2-methylcitrate dehydratase (EC 4.2.1.79)	Methylcitrate_cycle	Carbohydrates	Organic acids
2-methylisocitrate dehydratase (EC 4.2.1.99)	Methylcitrate_cycle	Carbohydrates	Organic acids
Methylisocitrate lyase (EC 4.1.3.30)	Methylcitrate_cycle	Carbohydrates	Organic acids
Propionate catabolism operon regulatory protein PrpR	Methylcitrate_cycle	Carbohydrates	Organic acids
Aconitate hydratase 2 (EC 4.2.1.3)	Methylcitrate_cycle	Carbohydrates	Organic acids
Propionate kinase (EC 2.7.2.15)	Methylcitrate_cycle	Carbohydrates	Organic acids
Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Methylcitrate_cycle	Carbohydrates	Organic acids
2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Methylcitrate_cycle	Carbohydrates	Organic acids
2-methylaconitate cis-trans isomerase	Methylcitrate_cycle	Carbohydrates	Organic acids
Propionate catabolism operon transcriptional regulator of GntR family [predicted]	Methylcitrate_cycle	Carbohydrates	Organic acids
2-methylcitrate dehydratase (EC 4.2.1.79)	Propanoate_to_succinate_module	Experimental Subsystems	
2-methylisocitrate dehydratase (EC 4.2.1.99)	Propanoate_to_succinate_module	Experimental Subsystems	
Methylisocitrate lyase (EC 4.1.3.30)	Propanoate_to_succinate_module	Experimental Subsystems	
2-methylcitrate synthase (EC 2.3.3.5)	Propanoate_to_succinate_module	Experimental Subsystems	
Propionate--CoA ligase (EC 6.2.1.17)	Propanoate_to_succinate_module	Experimental Subsystems	
2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Propanoate_to_succinate_module	Experimental Subsystems	
2-methylaconitate cis-trans isomerase	Propanoate_to_succinate_module	Experimental Subsystems	
2-methylcitrate synthase (EC 2.3.3.5)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
2-methylcitrate dehydratase (EC 4.2.1.79)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
2-methylisocitrate dehydratase (EC 4.2.1.99)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
Methylisocitrate lyase (EC 4.1.3.30)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
Propionate catabolism operon transcriptional regulator of GntR family [predicted]	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
Aconitate hydratase (EC 4.2.1.3)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
2-methylaconitate cis-trans isomerase	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
Propionate--CoA ligase (EC 6.2.1.17)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
Aconitate hydratase 2 (EC 4.2.1.3)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
2-methylaconitate cis-trans isomerase PrpF	Propionate-CoA_to_Succinate_Module	Carbohydrates	Organic acids
Transcriptional regulator LigR, LysR family	Vanillate_and_syringate_utilization	Metabolism of Aromatic Compounds	
Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)	Vanillate_and_syringate_utilization	Metabolism of Aromatic Compounds	
Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)	Vanillate_and_syringate_utilization	Metabolism of Aromatic Compounds	
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase	Vanillate_and_syringate_utilization	Metabolism of Aromatic Compounds	
2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57)	Vanillate_and_syringate_utilization	Metabolism of Aromatic Compounds	
4-oxalomesaconate hydratase (EC 4.2.1.83)	Vanillate_and_syringate_utilization	Metabolism of Aromatic Compounds	
4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17)	Vanillate_and_syringate_utilization	Metabolism of Aromatic Compounds	
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Crotonyl-CoA carboxylase/reductase, ethylmalonyl-CoA producing	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Isocitrate lyase (EC 4.1.3.1)	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.24)	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Malate synthase (EC 2.3.3.9)	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Malyl-CoA lyase (EC 4.1.3.24)	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Mesaconyl-CoA hydratase	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007)	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.-), actinobacterial type	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
crotonyl-CoA reductase	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Acetoacetyl-CoA reductase (EC 1.1.1.36) of ethylmalonyl-CoA pathway	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Acetyl-CoA acetyltransferase (EC 2.3.1.9) of ethylmalonyl-CoA pathway	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Acyltransferase family protein associated with ethylmalonyl-CoA pathway	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Hypothetical protein in cluster with Mesaconyl-CoA hydratase	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
NnrU family protein in cluster with Mesaconyl-CoA hydratase	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Putative cyclic di-GMP phosphodiesterase, EAL domain protein	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.-), chloroflexus type	Ethylmalonyl-CoA_pathway_of_C2_assimilation	Carbohydrates	Central carbohydrate metabolism
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Crotonyl-CoA carboxylase/reductase, ethylmalonyl-CoA producing	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Ethylmalonyl-CoA epimerase	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.24)	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Malyl-CoA lyase (EC 4.1.3.24)	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Mesaconyl-CoA hydratase	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007)	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Acetoacetyl-CoA reductase (EC 1.1.1.36) of ethylmalonyl-CoA pathway	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Acetyl-CoA acetyltransferase (EC 2.3.1.9) of ethylmalonyl-CoA pathway	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Acyltransferase family protein associated with ethylmalonyl-CoA pathway	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Hypothetical protein in cluster with Mesaconyl-CoA hydratase	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
NnrU family protein in cluster with Mesaconyl-CoA hydratase	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Putative cyclic di-GMP phosphodiesterase, EAL domain protein	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
crotonyl-CoA reductase	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Isocitrate lyase (EC 4.1.3.1)	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.-), actinobacterial type	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Malate synthase (EC 2.3.3.9)	Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO	Carbohydrates	Central carbohydrate metabolism
Phenol hydroxylase component	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
4-oxalocrotonate decarboxylase (EC 4.1.1.77)	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Phenol hydroxylase large subunit	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Catechol 2,3-dioxygenase (EC 1.13.11.2)	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
CDP-6-deoxy-delta-3,4-glucoseen reductase-like	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Protein GlcG	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9)	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Acetoacetyl-CoA reductase (EC 1.1.1.36)	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family)	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Regulatory protein GntR, HTH:GntR, C-terminal	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60)	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
Phenol hydroxylase subunit	CBSS-232721.5.peg.360	Clustering-based subsystems	Degradation of Polyphenols (?)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-)	carbazol_degradation_cluster	Metabolism of Aromatic Compounds	
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	carbazol_degradation_cluster	Metabolism of Aromatic Compounds	
2,3-dihydroxybiphenyl 1,2-dioxygenase	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-keto-4-pentenoate hydratase (EC 4.2.1.80)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Biphenyl dioxygenase alpha subunit (EC 1.14.12.18)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Biphenyl dioxygenase beta subunit (EC 1.14.12.18)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Biphenyl dioxygenase system ferredoxin component	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Biphenyl dioxygenase system ferredoxin--NAD( ) reductase component (EC 1.18.1.3)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Dihydrodiol dehydrogenase (EC 1.3.1.56)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Large subunit naph/bph dioxygenase	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
biphenyl-2,3-diol 1,2-dioxygenase III-related protein	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39)	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
biphenyl-2,3-diol 1,2-dioxygenase III-related protein VCA0463 VCA0328 VCA0341	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
Small subunit naph/bph dioxygenase	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2-hydroxypenta-2,4-dienoate hydratase	Biphenyl_Degradation	Metabolism of Aromatic Compounds	Peripheral pathways for catabolism of aromatic compounds
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxybenzoate transporter	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxyphenylacetate 3-monooxygenase, reductase component (EC 1.6.8.-)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Fumarylacetoacetate hydrolase family protein	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Protein involved in meta-pathway of phenol degradation	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-keto-4-pentenoate hydratase (EC 4.2.1.80)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-oxalocrotonate tautomerase (EC 5.3.2.-)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Mhp operon transcriptional activator	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
homoprotocatechuate 2,3-dioxygenase	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
4-oxalocrotonate decarboxylase (EC 4.1.1.77)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Catechol 2,3-dioxygenase (EC 1.13.11.2)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2,3-dihydroxyphenylpropionate 1,2-dioxygenase (EC 1.13.11.-)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Phenol hydroxylase, FAD- and [2Fe-2S]-containing reductase component DmpP	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Phenol hydroxylase, P1 oxygenase component DmpL (EC 1.14.13.7)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Phenol hydroxylase, P2 regulatory component DmpM (EC 1.14.13.7)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Phenol hydroxylase, assembly protein DmpK	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Positive regulator of phenol hydroxylase	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
extradiol dioxygenase large subunit	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Intradiol ring-cleavage dioxygenase (EC 1.13.11.1)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase (EC 3.7.1.-)	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2-hydroxymuconic semialdehyde hydrolase	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
1,2-dihydroxynaphthalene dioxygenase	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
benzaldehyde dehydrogenase	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
benzyl alcohol dehydrogenase	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
putative 4-hydroxyphenylacetate permease	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
3,4-dihydroxyphenylacetate 2,3-dioxygenase	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
putative ring-hydroxylating dioxygenase small subunit	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	Metabolism of central aromatic intermediates
2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
2,3-dihydroxyphenylpropionate 1,2-dioxygenase (EC 1.13.11.-)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase (EC 3.7.1.-)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
2-keto-4-pentenoate hydratase (EC 4.2.1.80)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
3-phenylpropionate dioxygenase ferredoxin subunit	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component (EC 1.18.1.3)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
3-phenylpropionate dioxygenase, alpha subunit (EC 1.14.12.19)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
3-phenylpropionate dioxygenase, beta subunit (EC 1.14.12.19)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
4-hydroxybenzoate transporter	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
Hca operon (3-phenylpropionic acid catabolism) transcriptional activator HcaR	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
Mhp operon transcriptional activator	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
Probable 3-phenylpropionic acid transporter	Cinnamic_Acid_Degradation	Secondary Metabolism	Aromatic amino acids and derivatives
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Fermentations:_Lactate	Carbohydrates	Fermentation
Acetate kinase (EC 2.7.2.1)	Fermentations:_Lactate	Carbohydrates	Fermentation
Alcohol dehydrogenase (EC 1.1.1.1)	Fermentations:_Lactate	Carbohydrates	Fermentation
D-lactate dehydrogenase (EC 1.1.1.28)	Fermentations:_Lactate	Carbohydrates	Fermentation
Fructose-6-phosphate phosphoketolase (EC 4.1.2.22)	Fermentations:_Lactate	Carbohydrates	Fermentation
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Fermentations:_Lactate	Carbohydrates	Fermentation
L-lactate dehydrogenase (EC 1.1.1.27)	Fermentations:_Lactate	Carbohydrates	Fermentation
Phosphate acetyltransferase (EC 2.3.1.8)	Fermentations:_Lactate	Carbohydrates	Fermentation
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	Fermentations:_Lactate	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase, ethanolamine utilization cluster	Fermentations:_Lactate	Carbohydrates	Fermentation
2-keto-4-pentenoate hydratase (EC 4.2.1.80)	Fermentations:_Lactate	Carbohydrates	Fermentation
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	Fermentations:_Lactate	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol	Fermentations:_Lactate	Carbohydrates	Fermentation
CoA-acylating propionaldehyde dehydrogenase	Fermentations:_Lactate	Carbohydrates	Fermentation
4-coumarate--CoA ligase (EC 6.2.1.12)	Caffeic_acid_derivatives	Secondary Metabolism	Biosynthesis of phenylpropanoids
Cinnamoyl-CoA reductase (EC 1.2.1.44)	Caffeic_acid_derivatives	Secondary Metabolism	Biosynthesis of phenylpropanoids
Acetyl-coenzyme A synthetase (EC 6.2.1.1)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Acetoacetyl-CoA synthetase (EC 6.2.1.16)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Pimeloyl-CoA synthase (EC 6.2.1.14)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
4-coumarate--CoA ligase (EC 6.2.1.12)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Benzoate-CoA ligase (EC 6.2.1.25)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Propionate--CoA ligase (EC 6.2.1.17)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Bile acyl-CoA synthetase (EC 6.2.1.7)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
3-hydroxypropionyl-CoA synthase (EC 6.2.1.36)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
LuxE, long-chain-fatty-acid ligase (EC 6.2.1.19)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Phenylacetate-coenzyme A ligase (EC 6.2.1.30) PaaF	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Trans-feruloyl-CoA synthase (EC 6.2.1.34)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Citrate--CoA ligase alpha chain (EC 6.2.1.18)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Citrate--CoA ligase beta chain (EC 6.2.1.18)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
4-hydroxybenzoate--CoA ligase (EC 6.2.1.27)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
3-hydroxybenzoate--CoA ligase (EC 6.2.1.37)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Malate--CoA ligase subunit alpha (EC 6.2.1.9)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Malate--CoA ligase subunit beta (EC 6.2.1.9)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD15	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD17	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD19	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
PQS biosynthesis protein PqsA, anthranilate-CoA ligase (EC 6.2.1.32)	EC_6.2.1.-_Ligases_forming_acid-thiol_bonds	Experimental Subsystems	
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	HPPD	Experimental Subsystems	
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)	HPPD	Experimental Subsystems	
Maleylacetoacetate isomerase (EC 5.2.1.2)	HPPD	Experimental Subsystems	
Fumarylacetoacetase (EC 3.7.1.2)	HPPD	Experimental Subsystems	
Chorismate--pyruvate lyase (EC 4.1.3.40)	HPPD	Experimental Subsystems	
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	HPPD	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	HPPD	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	HPPD	Experimental Subsystems	
Fumarylacetoacetate hydrolase family protein	HPPD	Experimental Subsystems	
2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG (EC 2.1.1.163)	HPPD	Experimental Subsystems	
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15)	HPPD	Experimental Subsystems	
N-methyl-L-amino-acid oxidase (EC 1.5.3.2)	HPPD	Experimental Subsystems	
N-methyl-L-tryptophan oxidase (EC 1.5.3.-)	HPPD	Experimental Subsystems	
2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG of phylloquinone biosynthesis (EC 2.1.1.-)	HPPD	Experimental Subsystems	
Probable L-amino-acid oxidase (EC 1.4.3.2)	HPPD	Experimental Subsystems	
4-coumarate--CoA ligase (EC 6.2.1.12)	HPPD	Experimental Subsystems	
Fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.5)	HPPD	Experimental Subsystems	
Tyrosine aminotransferase (EC 2.6.1.5)	HPPD	Experimental Subsystems	
4-hydroxyphenylpyruvate dioxygenase	HPPD	Experimental Subsystems	
homogentisate solanesyltransferase	HPPD	Experimental Subsystems	
Tryptophan 5-monooxygenase (EC 1.14.16.4)	HPPD	Experimental Subsystems	
Protein RtcB	Toxin_(yafQ)_Dave	Experimental Subsystems	
YafQ toxin protein	Toxin_(yafQ)_Dave	Experimental Subsystems	
Protein with similarity to RtcB	Toxin_(yafQ)_Dave	Experimental Subsystems	
DNA-damage-inducible protein J	Toxin_(yafQ)_Dave	Experimental Subsystems	
RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)	Toxin_(yafQ)_Dave	Experimental Subsystems	
RNA-2',3'-PO4:RNA-5'-OH ligase	Toxin_(yafQ)_Dave	Experimental Subsystems	
Putative ribonucleoprotein related-protein	Toxin_(yafQ)_Dave	Experimental Subsystems	
Putative ribonucleoprotein related-protein TROVE Domain	Toxin_(yafQ)_Dave	Experimental Subsystems	
two-component response regulator	F1453_mlsummers	Dormancy and Sporulation	
Lipid A disaccharide synthetase related enzyme	F1453_mlsummers	Dormancy and Sporulation	
Outer membrane protein/protective antigen OMA87	F1453_mlsummers	Dormancy and Sporulation	
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(S)-3-O-geranylgeranylglyceryl phosphate synthase	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Digeranylgeranylglycerophospholipid reductase	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dimethylallyltransferase (EC 2.5.1.1)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl phosphate kinase	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Mevalonate kinase (EC 2.7.1.36)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Diphosphomevalonate decarboxylase (EC 4.1.1.33)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hexaprenyl pyrophosphate synthetase	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phosphomevalonate kinase (EC 2.7.4.2)	archaeal_lipids_bobik	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
UDP-glucose-beta-D-glucan glucosyltransferase	Cellulose_synthase_chhandak	Experimental Subsystems	
Cellulose synthase (UDP-forming) (EC 2.4.1.12)	Cellulose_synthase_chhandak	Experimental Subsystems	
Cellulose synthase catalytic subunit (EC 2.4.1.12)	Cellulose_synthase_chhandak	Experimental Subsystems	
Triphosphoribosyl-dephospho-CoA synthetase	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
beta-ribofuranosylaminobenzene 5'-phosphate synthase	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
COG1548 family protein	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
duf556 family protein	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
Formaldehyde activating enzyme	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
Formylmethanofuran dehydrogenase subunit B (EC 1.2.99.5)	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
Formylmethanofuran dehydrogenase subunit A (EC 1.2.99.5)	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase (EC 2.3.1.101)	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
Formylmethanofuran dehydrogenase subunit C (EC 1.2.99.5)	Methanofuran_Biosynthesis_(Probable)	Experimental Subsystems	
L-tyrosine decarboxylase (EC 4.1.1.25)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Triphosphoribosyl-dephospho-CoA synthetase	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
diptheria toxin resistance protein required for diphthamide biosynthesis (Saccharomyces)-like 1	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
D-arabino-3-hexulose 6-phosphate formaldehyde-lyase (EC 4.1.2.43)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase (EC 2.3.1.101)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
duf556 family protein	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glutamate N-acetyltransferase (EC 2.3.1.35)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ApbE family lipoprotein	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Duf39 methanogenesis marker 16 metalloprotein	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5'-nucleotidase surE (EC 3.1.3.5)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
L-Aspartate dehydrogenase (EC 1.4.1.21)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
[NiFe] hydrogenase nickel incorporation-associated protein HypB	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical protein with distant similarity to Ribonuclease E inhibitor RraA (former MenG)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Selenophosphate synthetase-related protein MJ0640	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
COG1821 family protein	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
COG1548 family protein	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Uncharacterized ferredoxin oxidoreductase MJ0100	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Uncharacterized protein MJ0787	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Biotin synthase-related protein in some methanogens	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
M. jannaschii predicted coding region MJ0664	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Valine--pyruvate aminotransferase (EC 2.6.1.66)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
phosphoribosylformylglycinamidine cyclo-ligase isolog (purM)	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
FIG00807954: hypothetical protein	Methanofuran_erick_jmorales	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rubrerythrin	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
beta-ribofuranosylaminobenzene 5'-phosphate synthase	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
Related to Dihydropteroate synthase	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
Archaeal flavoprotein COG1036	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
duf556 family protein	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
Iron-sulfur flavoprotein MJ0731	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
DUF447 family protein	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
cytochrome c family protein	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
Flavoprotein	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
putative flavodoxin	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
Flavoprotein A	MPT_Biosynthesis_markdaniel	Experimental Subsystems	
Stationary phase secreted protein TasA, major protein component of biofilm matrix	Biofilm_ketran	Experimental Subsystems	
Tyrosine-protein kinase transmembrane modulator EpsC	Biofilm_ketran	Experimental Subsystems	
Tyrosine-protein kinase EpsD (EC 2.7.10.2)	Biofilm_ketran	Experimental Subsystems	
Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-)	Biofilm_ketran	Experimental Subsystems	
Acetyltransferase (EC 2.3.1.-)	Biofilm_ketran	Experimental Subsystems	
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	Biofilm_ketran	Experimental Subsystems	
Polysaccharide polymerization protein	Biofilm_ketran	Experimental Subsystems	
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Biofilm_ketran	Experimental Subsystems	
Amino acid racemase RacX	Biofilm_ketran	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	Biofilm_ketran	Experimental Subsystems	
Arginine decarboxylase (EC 4.1.1.19) / Lysine decarboxylase (EC 4.1.1.18)	Biofilm_ketran	Experimental Subsystems	
Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Biofilm_ketran	Experimental Subsystems	
SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Biofilm_ketran	Experimental Subsystems	
SinI protein, antagonist of SinR	Biofilm_ketran	Experimental Subsystems	
Slr, positive regulator of the extracellular matrix biosynthesis operon yqxM-sipW-tasA	Biofilm_ketran	Experimental Subsystems	
YqxM protein, required for localization of TasA to extracellular matrix	Biofilm_ketran	Experimental Subsystems	
FIG006542: Phosphoesterase	Biofilm_ketran	Experimental Subsystems	
Type IV fimbrial assembly, ATPase PilB	Biofilm_ketran	Experimental Subsystems	
exopolysaccharide synthesis protein ExoD-related protein	Biofilm_ketran	Experimental Subsystems	
exopolysaccharide export protein	Biofilm_ketran	Experimental Subsystems	
exopolysaccharide export protein sll1581	Biofilm_ketran	Experimental Subsystems	
exopolysaccharide export protein sll5052	Biofilm_ketran	Experimental Subsystems	
Biofilm PGA outer membrane secretin PgaA	Biofilm_ketran	Experimental Subsystems	
Biofilm PGA synthesis deacetylase PgaB (EC 3.-)	Biofilm_ketran	Experimental Subsystems	
Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-)	Biofilm_ketran	Experimental Subsystems	
Biofilm PGA synthesis auxiliary protein PgaD	Biofilm_ketran	Experimental Subsystems	
Protein YjgK, linked to biofilm formation	Biofilm_ketran	Experimental Subsystems	
Anti-sigma regulatory factor (Ser/Thr protein kinase), essential for photomixotrophic growth, PmgA	F0876_mlsummers	Experimental Subsystems	
DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	F0876_mlsummers	Experimental Subsystems	
RNA methyltransferase, TrmA family	F0876_mlsummers	Experimental Subsystems	
FIG00872702: hypothetical protein	F0876_mlsummers	Experimental Subsystems	
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1	F420_bobik	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2	F420_bobik	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Coenzyme F420-0:L-glutamate ligase	F420_bobik	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Coenzyme F420-1:L-glutamate ligase	F420_bobik	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Lactyl (2) diphospho-(5')guanosine:7,8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase	F420_bobik	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
Coenzyme gamma-F420-2:L-glutamate ligase	F420_bobik	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
putative L-glutamate ligase	F420_bobik	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme F420
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Aminodeoxychorismate lyase (EC 4.1.3.38)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Chorismate--pyruvate lyase (EC 4.1.3.40)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Isocitrate lyase (EC 4.1.3.1)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Citrate lyase alpha chain (EC 4.1.3.6)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Citrate lyase beta chain (EC 4.1.3.6)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Naphthoate synthase (EC 4.1.3.36)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
N-acetylneuraminate lyase (EC 4.1.3.3)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Methylisocitrate lyase (EC 4.1.3.30)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.24)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
(3S)-malyl-CoA thioesterase (EC 3.1.2.n2)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
3-hydroxy-D-aspartate aldolase (EC 4.1.3.41)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Malyl-CoA lyase (EC 4.1.3.24)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.n1)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Citrate CoA-transferase (EC 2.8.3.10)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
2,3-dimethylmalate lyase (EC 4.1.3.32)	EC_4.1.3.-_Oxo-acid-lyases	Miscellaneous	
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	XHY_ADC_BNL	Experimental Subsystems	
Nitroalkane oxidizing family protein	XHY_ADC_BNL	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	XHY_ADC_BNL	Experimental Subsystems	
Hypothetical protein, AT1G64980 homolog	XHY_ADC_BNL	Experimental Subsystems	
Binding-protein-dependent ABC transporter inner membrane component	XHY_ADC_BNL	Experimental Subsystems	
Acyl-ACP reductase	XHY_ADC_BNL	Experimental Subsystems	
Aldehyde decarbonylase (EC 4.1.99.5)	XHY_ADC_BNL	Experimental Subsystems	
Haloalkane dehalogenase-like protein, At1g52510/AT4G12830 homolog	XHY_ADC_BNL	Experimental Subsystems	
FAD dependent oxidoreductase, specific for cyanobacteria	XHY_ADC_BNL	Experimental Subsystems	
FIG01150086: hypothetical protein	XHY_ADC_BNL	Experimental Subsystems	
Sepiapterin reductase (EC 1.1.1.153)	XHY_ADC_BNL	Experimental Subsystems	
Methionyl-tRNA synthetase (EC 6.1.1.10)	At4g19540_(COG0489)	Experimental Subsystems	
Cell division protein MraZ	At4g19540_(COG0489)	Experimental Subsystems	
Uridine kinase (EC 2.7.1.48) [C1]	At4g19540_(COG0489)	Experimental Subsystems	
PaaD-like protein involved in Fe-S cluster assembly	At4g19540_(COG0489)	Experimental Subsystems	
Deoxycytidine triphosphate deaminase (EC 3.5.4.13)	At4g19540_(COG0489)	Experimental Subsystems	
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	At4g19540_(COG0489)	Experimental Subsystems	
Iron-sulfur cluster-binding protein	At4g19540_(COG0489)	Experimental Subsystems	
tRNA-Thr	At4g19540_(COG0489)	Experimental Subsystems	
MRP-like protein, COG0489, putative nucleotide binding domain	At4g19540_(COG0489)	Experimental Subsystems	
HtrA protease/chaperone protein	At4g19540_(COG0489)	Experimental Subsystems	
HflC protein	At4g19540_(COG0489)	Experimental Subsystems	
HflK protein	At4g19540_(COG0489)	Experimental Subsystems	
Bacterial cell division membrane protein	At4g19540_(COG0489)	Experimental Subsystems	
Hypothetical protein, Mrp/NBP35 family	At4g19540_(COG0489)	Experimental Subsystems	
Cytosolic Fe-S cluster assembling factor NBP35	At4g19540_(COG0489)	Experimental Subsystems	
Cytosolic Fe-S cluster assembly factor CFD1	At4g19540_(COG0489)	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaB	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaC	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaD	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaE	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis protein MoeA	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis protein MoeB	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin-guanine dinucleotide biosynthesis protein MobA	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin-guanine dinucleotide biosynthesis protein MobB	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase II (EC 3.5.4.25)	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis Mog protein, molybdochelatase	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
CTP:molybdopterin cytidylyltransferase	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DNA-binding domain of ModE	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdate-binding domain of ModE	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Sulfur carrier protein adenylyltransferase ThiF	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis enzyme	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Periplasmic molybdate-binding domain	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin binding domain MoeA-like	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum transport system protein ModD	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Protein co-occuring with molybdenum cofactor biosynthesis protein B	Molybdenum_cofactor_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis protein MoeA	Molybdopterin_experimental	Experimental Subsystems	
Molybdopterin biosynthesis protein MoeB	Molybdopterin_experimental	Experimental Subsystems	
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	Molybdopterin_experimental	Experimental Subsystems	
Molybdenum cofactor biosynthesis protein MoaB	Molybdopterin_experimental	Experimental Subsystems	
Molybdenum cofactor biosynthesis protein MoaC	Molybdopterin_experimental	Experimental Subsystems	
Molybdenum cofactor biosynthesis protein MoaD	Molybdopterin_experimental	Experimental Subsystems	
Molybdenum cofactor biosynthesis protein MoaE	Molybdopterin_experimental	Experimental Subsystems	
Molybdopterin-guanine dinucleotide biosynthesis protein MobA	Molybdopterin_experimental	Experimental Subsystems	
Molybdopterin-guanine dinucleotide biosynthesis protein MobB	Molybdopterin_experimental	Experimental Subsystems	
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Molybdopterin_experimental	Experimental Subsystems	
RidA	Iron-Sulfur	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	Iron-Sulfur	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Iron-Sulfur	Experimental Subsystems	
Aconitate hydratase (EC 4.2.1.3)	Iron-Sulfur	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	Iron-Sulfur	Experimental Subsystems	
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Iron-Sulfur	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	Iron-Sulfur	Experimental Subsystems	
Ferredoxin	Iron-Sulfur	Experimental Subsystems	
Biotin synthase (EC 2.8.1.6)	Iron-Sulfur	Experimental Subsystems	
Lipoate synthase	Iron-Sulfur	Experimental Subsystems	
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Iron-Sulfur	Experimental Subsystems	
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	Iron-Sulfur	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Iron-Sulfur	Experimental Subsystems	
Iron-sulfur cluster assembly ATPase protein SufC	Iron-Sulfur	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Iron-Sulfur	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Iron-Sulfur	Experimental Subsystems	
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	Iron-Sulfur	Experimental Subsystems	
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	Iron-Sulfur	Experimental Subsystems	
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	Iron-Sulfur	Experimental Subsystems	
Dihydroxy-acid dehydratase (EC 4.2.1.9)	Iron-Sulfur	Experimental Subsystems	
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Iron-Sulfur	Experimental Subsystems	
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Iron-Sulfur	Experimental Subsystems	
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Iron-Sulfur	Experimental Subsystems	
Putative arylsulfatase regulatory protein	Iron-Sulfur	Experimental Subsystems	
Fumarate and nitrate reduction regulatory protein	Iron-Sulfur	Experimental Subsystems	
Iron-sulfur cluster regulator IscR	Iron-Sulfur	Experimental Subsystems	
Redox-sensitive transcriptional activator SoxR	Iron-Sulfur	Experimental Subsystems	
Predicted N-ribosylNicotinamide CRP-like regulator	Iron-Sulfur	Experimental Subsystems	
A/G-specific adenine glycosylase (EC 3.2.2.-)	Iron-Sulfur	Experimental Subsystems	
Endonuclease III (EC 4.2.99.18)	Iron-Sulfur	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU	Iron-Sulfur	Experimental Subsystems	
Iron binding protein IscA for iron-sulfur cluster assembly	Iron-Sulfur	Experimental Subsystems	
Iron binding protein SufA for iron-sulfur cluster assembly	Iron-Sulfur	Experimental Subsystems	
probable iron binding protein from the HesB_IscA_SufA family	Iron-Sulfur	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufB	Iron-Sulfur	Experimental Subsystems	
Ferredoxin, 2Fe-2S	Iron-Sulfur	Experimental Subsystems	
Bacterioferritin-associated ferredoxin	Iron-Sulfur	Experimental Subsystems	
3-phenylpropionate dioxygenase ferredoxin subunit	Iron-Sulfur	Experimental Subsystems	
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Iron-Sulfur	Experimental Subsystems	
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	Iron-Sulfur	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Iron-Sulfur	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Iron-Sulfur	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Iron-Sulfur	Experimental Subsystems	
Sigma factor RpoE regulatory protein RseC	Iron-Sulfur	Experimental Subsystems	
Electron transport complex protein RnfB	Iron-Sulfur	Experimental Subsystems	
Electron transport complex protein RnfC	Iron-Sulfur	Experimental Subsystems	
Formate dehydrogenase chain D (EC 1.2.1.2)	Iron-Sulfur	Experimental Subsystems	
Formate dehydrogenase O beta subunit (EC 1.2.1.2)	Iron-Sulfur	Experimental Subsystems	
Ferric reductase (1.6.99.14)	Iron-Sulfur	Experimental Subsystems	
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	Iron-Sulfur	Experimental Subsystems	
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Iron-Sulfur	Experimental Subsystems	
Hydroxylamine reductase (EC 1.7.-.-)	Iron-Sulfur	Experimental Subsystems	
NADH oxidoreductase hcr (EC 1.-.-.-)	Iron-Sulfur	Experimental Subsystems	
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Iron-Sulfur	Experimental Subsystems	
Ferredoxin-type protein NapF (periplasmic nitrate reductase)	Iron-Sulfur	Experimental Subsystems	
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Iron-Sulfur	Experimental Subsystems	
Polyferredoxin NapH (periplasmic nitrate reductase)	Iron-Sulfur	Experimental Subsystems	
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Iron-Sulfur	Experimental Subsystems	
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Iron-Sulfur	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Iron-Sulfur	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Iron-Sulfur	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Iron-Sulfur	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Iron-Sulfur	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Iron-Sulfur	Experimental Subsystems	
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	Iron-Sulfur	Experimental Subsystems	
Hydrogenase-2 operon protein hybA precursor	Iron-Sulfur	Experimental Subsystems	
Formate hydrogenlyase subunit 2	Iron-Sulfur	Experimental Subsystems	
Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit	Iron-Sulfur	Experimental Subsystems	
Formate hydrogenlyase subunit 7	Iron-Sulfur	Experimental Subsystems	
Hydrogenase-4 component A	Iron-Sulfur	Experimental Subsystems	
Hydrogenase-4 component H	Iron-Sulfur	Experimental Subsystems	
Hydrogenase-4 component I	Iron-Sulfur	Experimental Subsystems	
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family	Iron-Sulfur	Experimental Subsystems	
Phosphogluconate dehydratase (EC 4.2.1.12)	Iron-Sulfur	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Iron-Sulfur	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	Iron-Sulfur	Experimental Subsystems	
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	Iron-Sulfur	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU/NifU-like	Iron-Sulfur	Experimental Subsystems	
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Iron-Sulfur	Experimental Subsystems	
Coenzyme PQQ synthesis protein E	Iron-Sulfur	Experimental Subsystems	
L-serine dehydratase (EC 4.3.1.17)	Iron-Sulfur	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Iron-Sulfur	Experimental Subsystems	
Formate dehydrogenase N beta subunit (EC 1.2.1.2)	Iron-Sulfur	Experimental Subsystems	
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	Iron-sulfur_experimental	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	Iron-sulfur_experimental	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Iron-sulfur_experimental	Experimental Subsystems	
Aconitate hydratase (EC 4.2.1.3)	Iron-sulfur_experimental	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	Iron-sulfur_experimental	Experimental Subsystems	
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Iron-sulfur_experimental	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	Iron-sulfur_experimental	Experimental Subsystems	
Biotin synthase (EC 2.8.1.6)	Iron-sulfur_experimental	Experimental Subsystems	
Lipoate synthase	Iron-sulfur_experimental	Experimental Subsystems	
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Iron-sulfur_experimental	Experimental Subsystems	
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	Iron-sulfur_experimental	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Iron-sulfur_experimental	Experimental Subsystems	
Iron-sulfur cluster assembly ATPase protein SufC	Iron-sulfur_experimental	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Iron-sulfur_experimental	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Iron-sulfur_experimental	Experimental Subsystems	
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	Iron-sulfur_experimental	Experimental Subsystems	
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	Iron-sulfur_experimental	Experimental Subsystems	
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	Iron-sulfur_experimental	Experimental Subsystems	
Dihydroxy-acid dehydratase (EC 4.2.1.9)	Iron-sulfur_experimental	Experimental Subsystems	
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Iron-sulfur_experimental	Experimental Subsystems	
L-serine dehydratase (EC 4.3.1.17)	Iron-sulfur_experimental	Experimental Subsystems	
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Iron-sulfur_experimental	Experimental Subsystems	
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Iron-sulfur_experimental	Experimental Subsystems	
Putative arylsulfatase regulatory protein	Iron-sulfur_experimental	Experimental Subsystems	
Fumarate and nitrate reduction regulatory protein	Iron-sulfur_experimental	Experimental Subsystems	
Iron-sulfur cluster regulator IscR	Iron-sulfur_experimental	Experimental Subsystems	
Redox-sensitive transcriptional activator SoxR	Iron-sulfur_experimental	Experimental Subsystems	
Predicted N-ribosylNicotinamide CRP-like regulator	Iron-sulfur_experimental	Experimental Subsystems	
A/G-specific adenine glycosylase (EC 3.2.2.-)	Iron-sulfur_experimental	Experimental Subsystems	
Endonuclease III (EC 4.2.99.18)	Iron-sulfur_experimental	Experimental Subsystems	
23S rRNA (Uracil-5-) -methyltransferase rumA (EC 2.1.1.-)	Iron-sulfur_experimental	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU	Iron-sulfur_experimental	Experimental Subsystems	
Iron binding protein IscA for iron-sulfur cluster assembly	Iron-sulfur_experimental	Experimental Subsystems	
Iron binding protein SufA for iron-sulfur cluster assembly	Iron-sulfur_experimental	Experimental Subsystems	
probable iron binding protein from the HesB_IscA_SufA family	Iron-sulfur_experimental	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufB	Iron-sulfur_experimental	Experimental Subsystems	
Ferredoxin, 2Fe-2S	Iron-sulfur_experimental	Experimental Subsystems	
Bacterioferritin-associated ferredoxin	Iron-sulfur_experimental	Experimental Subsystems	
3-phenylpropionate dioxygenase ferredoxin subunit	Iron-sulfur_experimental	Experimental Subsystems	
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Iron-sulfur_experimental	Experimental Subsystems	
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	Iron-sulfur_experimental	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Iron-sulfur_experimental	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
Sigma factor RpoE regulatory protein RseC	Iron-sulfur_experimental	Experimental Subsystems	
Electron transport complex protein RnfB	Iron-sulfur_experimental	Experimental Subsystems	
Electron transport complex protein RnfC	Iron-sulfur_experimental	Experimental Subsystems	
Formate dehydrogenase N beta subunit (EC 1.2.1.2)	Iron-sulfur_experimental	Experimental Subsystems	
Formate dehydrogenase chain D (EC 1.2.1.2)	Iron-sulfur_experimental	Experimental Subsystems	
Formate dehydrogenase O beta subunit (EC 1.2.1.2)	Iron-sulfur_experimental	Experimental Subsystems	
Ferric reductase (1.6.99.14)	Iron-sulfur_experimental	Experimental Subsystems	
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Iron-sulfur_experimental	Experimental Subsystems	
Hydroxylamine reductase (EC 1.7.-.-)	Iron-sulfur_experimental	Experimental Subsystems	
NADH oxidoreductase hcr (EC 1.-.-.-)	Iron-sulfur_experimental	Experimental Subsystems	
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Iron-sulfur_experimental	Experimental Subsystems	
Ferredoxin-type protein NapF (periplasmic nitrate reductase)	Iron-sulfur_experimental	Experimental Subsystems	
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Iron-sulfur_experimental	Experimental Subsystems	
Polyferredoxin NapH (periplasmic nitrate reductase)	Iron-sulfur_experimental	Experimental Subsystems	
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Iron-sulfur_experimental	Experimental Subsystems	
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Iron-sulfur_experimental	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Iron-sulfur_experimental	Experimental Subsystems	
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	Iron-sulfur_experimental	Experimental Subsystems	
Hydrogenase-2 operon protein hybA precursor	Iron-sulfur_experimental	Experimental Subsystems	
Formate hydrogenlyase subunit 2	Iron-sulfur_experimental	Experimental Subsystems	
Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit	Iron-sulfur_experimental	Experimental Subsystems	
Formate hydrogenlyase subunit 7	Iron-sulfur_experimental	Experimental Subsystems	
Hydrogenase-4 component A	Iron-sulfur_experimental	Experimental Subsystems	
Hydrogenase-4 component H	Iron-sulfur_experimental	Experimental Subsystems	
Hydrogenase-4 component I	Iron-sulfur_experimental	Experimental Subsystems	
Putative 2-component regulator, interaction with sigma 54	Iron-sulfur_experimental	Experimental Subsystems	
Phosphogluconate dehydratase (EC 4.2.1.12)	Iron-sulfur_experimental	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Iron-sulfur_experimental	Experimental Subsystems	
Ferredoxin	Iron-sulfur_experimental	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	Iron-sulfur_experimental	Experimental Subsystems	
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	Iron-sulfur_experimental	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU/NifU-like	Iron-sulfur_experimental	Experimental Subsystems	
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Iron-sulfur_experimental	Experimental Subsystems	
Coenzyme PQQ synthesis protein E	Iron-sulfur_experimental	Experimental Subsystems	
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family	Iron-sulfur_experimental	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Iron-sulfur_experimental	Experimental Subsystems	
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroorotase (EC 3.5.2.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroorotate dehydrogenase (EC 1.3.3.1)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Orotate phosphoribosyltransferase (EC 2.4.2.10)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aspartate carbamoyltransferase (EC 2.1.3.2)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Amidophosphoribosyltransferase (EC 2.4.2.14)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
tRNA-i(6)A37 methylthiotransferase	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aconitate hydratase (EC 4.2.1.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aconitate hydratase 2 (EC 4.2.1.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
UPF0269 protein yggX	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Quinolinate synthetase (EC 2.5.1.72)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
L-aspartate oxidase (EC 1.4.3.16)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Biotin synthase (EC 2.8.1.6)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Lipoate synthase	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Ferric uptake regulation protein FUR	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Iron-sulfur cluster assembly ATPase protein SufC	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thiol:disulfide interchange protein DsbC	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoglycerate kinase (EC 2.7.2.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Chorismate synthase (EC 4.2.3.5)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase II (EC 3.5.4.25)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Queuosine Biosynthesis QueC ATPase	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
YgfY COG2938	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Iron binding protein IscA for iron-sulfur cluster assembly	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Twin-arginine translocation protein TatA	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
S-formylglutathione hydrolase (EC 3.1.2.12)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cystathionine gamma-synthase (EC 2.5.1.48)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutamate--cysteine ligase (EC 6.3.2.2)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutathione synthetase (EC 6.3.2.3)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminodeoxychorismate lyase (EC 4.1.3.38)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Ferredoxin	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Transcriptional regulator, FUR family	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cysteine desulfurase (EC 2.8.1.7)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
D-arabino-3-hexulose 6-phosphate formaldehyde-lyase (EC 4.1.2.43)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Rhodanese-related sulfurtransferase	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formaldehyde activating enzyme	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutamate--cysteine ligase archaeal (EC 6.3.2.2)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DUF1794	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formaldehyde dehydrogenase MscR, NAD/mycothiol-dependent (EC 1.2.1.66)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Putative hydrolase in cluster with formaldehyde/S-nitrosomycothiol reductase MscR	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Coenzyme PQQ synthesis protein E	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Spore photoproduct lyase (EC 4.1.99.14)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cystathionine gamma-synthase (EC 2.5.1.48) fungal type	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glutamate--cysteine ligase eukaryotic (EC 6.3.2.2)	YgfZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Tryptophanase (EC 4.1.99.1)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Tyrosine phenol-lyase (EC 4.1.99.2)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Aldehyde decarbonylase (EC 4.1.99.5)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Benzylsuccinate synthase alpha subunit (EC 4.1.99.11)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Benzylsuccinate synthase beta subunit (EC 4.1.99.11)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Benzylsuccinate synthase gamma subunit (EC 4.1.99.11)	EC_4.1.99.-_Other_carbon-carbon_lyases	Experimental Subsystems	
Hexuronate utilization operon transcriptional repressor ExuR	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Hexuronate transporter	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Altronate dehydratase (EC 4.2.1.7)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Altronate oxidoreductase (EC 1.1.1.58)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Uronate isomerase (EC 5.3.1.12)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
D-mannonate oxidoreductase (EC 1.1.1.57)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Fructuronate transporter GntP	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Uxu operon transcriptional regulator	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Mannonate dehydratase (EC 4.2.1.8)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Transcriptional regulator KdgR, KDG operon repressor	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
2-keto-3-deoxygluconate permease (KDG permease)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Pectinesterase (EC 3.1.1.11)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Beta-glucuronidase (EC 3.2.1.31)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Glucuronide transporter UidB	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Glucuronide transport facilitator UidC	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Transcriptional repressor UidR	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
D-galactarate dehydratase (EC 4.2.1.42)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Gluconokinase (EC 2.7.1.12)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Pectin degradation protein KdgF	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Rhamnogalacturonides degradation protein RhiN	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Oligogalacturonate-specific porin protein KdgM	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Exopolygalacturonate lyase (EC 4.2.2.9)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Oligogalacturonate lyase (EC 4.2.2.6)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Alpha-glucosidase (EC 3.2.1.20)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Uronate isomerase, family BH0493 (EC 5.3.1.12)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Pectate lyase precursor (EC 4.2.2.2)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Alpha-glucuronidase (EC 3.2.1.139)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Pectin lyase (EC 4.2.2.10)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Polygalacturonase (EC 3.2.1.15)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Glucuronide permease	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Alcohol dehydrogenase, zinc-containing	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Novel D-mannonate dehydrogenase (EC 1.1.1.57)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Novel D-tagaturonate epimerase	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Uronate dehydrogenase (EC 1.1.1.203)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Novel D-mannonate-D-gluconate epimerase	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Regulator of pectin and galacturonate utilization, GntR family	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Alpha-1,4-digalacturonate ABC transporter, permease protein 2	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Alpha-1,4-digalacturonate ABC transporter, permease protein 1	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Xylan oligosaccharide ABC transporter, permease component 1	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Xylan oligosaccharide ABC transporter, permease component 2	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Xylan oligosaccharide ABC transporter, ATP-binding protein 2	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Putative methyl oligogalcturonate esterase	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Carbohydrate-binding, CenC domain protein	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Intracellular alpha-amylase (EC 3.2.1.1)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67)	D-Galacturonate_and_D-Glucuronate_Utilization	Carbohydrates	Monosaccharides
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Test_SulfurADP1	Experimental Subsystems	
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	Test_SulfurADP1	Experimental Subsystems	
Oxidoreductase probably involved in sulfite reduction	Test_SulfurADP1	Experimental Subsystems	
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)	Test_Tcu	Experimental Subsystems	
TcuR: regulates tcuABC genes used in utilization of tricarballylate	Test_Tcu	Experimental Subsystems	
TcuA: flavoprotein used to oxidize tricarballylate to cis-aconitate	Test_Tcu	Experimental Subsystems	
TcuC: integral membrane protein used to transport tricarballylate across the cell membrane	Test_Tcu	Experimental Subsystems	
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	COG3236	Experimental Subsystems	
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	COG3236	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	COG3236	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	COG3236	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	COG3236	Experimental Subsystems	
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	COG3236	Experimental Subsystems	
Nudix-related transcriptional regulator NrtR	COG3236	Experimental Subsystems	
ATP-dependent helicase DinG/Rad3	COG3236	Experimental Subsystems	
ATP-dependent RNA helicase RhlE	COG3236	Experimental Subsystems	
Adenosine deaminase (EC 3.5.4.4)	COG3236	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	COG3236	Experimental Subsystems	
Uncharacterized protein COG3236	COG3236	Experimental Subsystems	
RNA:NAD 2'-phosphotransferase	COG3236	Experimental Subsystems	
NadR transcriptional regulator	COG3236	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	COG3236	Experimental Subsystems	
Ribosylnicotinamide kinase (EC 2.7.1.22)	COG3236	Experimental Subsystems	
Ribosyl nicotinamide transporter, PnuC-like	COG3236	Experimental Subsystems	
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)	COG3236	Experimental Subsystems	
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)	COG3236	Experimental Subsystems	
ADP-ribosylglycohydrolase	COG3236	Experimental Subsystems	
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22)	COG3236	Experimental Subsystems	
Phosphoserine phosphatase (EC 3.1.3.3)	Mannitol_Synthesis_Acinetobacter	Experimental Subsystems	
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)	Mannitol_Synthesis_Acinetobacter	Experimental Subsystems	
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methylthioribose kinase (EC 2.7.1.100)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase (EC 3.1.3.87)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate aminotransferase (EC 2.6.1.1)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methylthioribulose-1-phosphate dehydratase related protein	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5'-methylthioadenosine phosphorylase (EC 2.4.2.28)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
similar to ribulose-1,5-bisphosphate carboxylase, Type III	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
similar to ribulose-1,5-bisphosphate carboxylase, Type III, too	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine aminotransferase, PLP-dependent	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate/tyrosine/aromatic aminotransferase	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase related protein	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3-diketo-5-methylthiopentyl-1-phosphate enolase (EC 5.3.2.5)	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase related protein	Methionine_Salvage	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Ethanolamine utilization protein EutA	CBSS-195102.1.peg.963		
Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	CBSS-195102.1.peg.963		
Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	CBSS-195102.1.peg.963		
Ethanolamine utilization polyhedral-body-like protein EutL	CBSS-195102.1.peg.963		
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), ethanolamine utilization	CBSS-195102.1.peg.963		
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	CBSS-195102.1.peg.963		
Propanediol utilization protein PduV	CBSS-195102.1.peg.963		
Trimethylamine:corrinoid methyltransferase	CBSS-195102.1.peg.963		
Trimethylamine methyltransferase family protein	CBSS-195102.1.peg.963		
pyrrolysine-containing	CBSS-195102.1.peg.963		
Ethanolamine utilization protein similar to PduA/PduJ	CBSS-195102.1.peg.963		
Ethanolamine permease	CBSS-195102.1.peg.963		
Ethanolamine utilization polyhedral-body-like protein EutN	CBSS-195102.1.peg.963		
Ethanolamine utilization protein similar to PduL	CBSS-195102.1.peg.963		
Ethanolamine sensory transduction histidine kinase	CBSS-195102.1.peg.963		
Ethanolamine utilization protein EutQ	CBSS-195102.1.peg.963		
Ethanolamine two-component response regulator	CBSS-195102.1.peg.963		
Alcohol dehydrogenase (EC 1.1.1.1)	CBSS-195102.1.peg.963		
Ethanolamine utilization protein similar to PduT	CBSS-195102.1.peg.963		
Acetaldehyde dehydrogenase, ethanolamine utilization cluster (EC 1.2.1.10)	CBSS-195102.1.peg.963		
Ethanolamine utilization polyhedral-body-like protein EutM	CBSS-195102.1.peg.963		
Ethanolamine utilization protein similar to PduU	CBSS-195102.1.peg.963		
Protein clustered with ethanolamine utilization	CBSS-195102.1.peg.963		
Ethanolamine utilization protein similar to PduV	CBSS-195102.1.peg.963		
Acetaldehyde dehydrogenase, ethanolamine utilization cluster	CBSS-195102.1.peg.963		
Ethanolamine utilization protein EutJ	CBSS-195102.1.peg.963		
hypothetical protein	CBSS-195102.1.peg.963		
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml	CBSS-195102.1.peg.963		
Transcriptional regulator, AraC family	CBSS-195102.1.peg.963		
Cob(III)alamin reductase	CBSS-195102.1.peg.963		
Cob(II)alamin reductase	CBSS-195102.1.peg.963		
Propanediol utilization polyhedral body protein PduT	CBSS-195102.1.peg.963		
Ethanolamine utilization protein EutG	CBSS-195102.1.peg.963		
Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1)	CBSS-195102.1.peg.963		
Response regulator receiver	CBSS-195102.1.peg.963		
Ethanolamine operon regulatory protein	CBSS-195102.1.peg.963		
Ethanolamine utilization polyhedral-body-like protein EutK	CBSS-195102.1.peg.963		
Putative iron-containing NADPH-dependent propanol dehydrogenase	CBSS-195102.1.peg.963		
Propanediol utilization polyhedral body protein PduU	CBSS-195102.1.peg.963		
Acetyltransferase YpeA	CBSS-195102.1.peg.963		
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	CBSS-195102.1.peg.963		
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	CBSS-195102.1.peg.963		
Inner membrane protein YfeZ	CBSS-195102.1.peg.963		
Predicted iron-dependent peroxidase, Dyp-type family	CBSS-195102.1.peg.963		
Predicted outer membrane lipoprotein YfeY	CBSS-195102.1.peg.963		
Sulfate and thiosulfate binding protein CysP	CBSS-195102.1.peg.963		
Oxidoreductase ucpA (EC 1.-.-.-)	CBSS-195102.1.peg.963		
Phosphoserine phosphatase (EC 3.1.3.3)	CBSS-195102.1.peg.963		
Dihydropteroate synthase (EC 2.5.1.15)	CBSS-195102.1.peg.963		
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	CBSS-195102.1.peg.963		
NADPH-dependent butanol dehydrogenase	CBSS-195102.1.peg.963		
domain of unknown function	CBSS-195102.1.peg.963		
ethanolamine utilization protein eutP	CBSS-195102.1.peg.963		
Acetaldehyde dehydrogenase (EC 1.2.1.10)	CBSS-195102.1.peg.963		
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	CBSS-195102.1.peg.963		
Nickel transport ATP-binding protein nikE	CBSS-195102.1.peg.963		
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	CBSS-195102.1.peg.963		
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	CBSS-195102.1.peg.963		
Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)	CBSS-195102.1.peg.963		
microcompartments protein	CBSS-195102.1.peg.963		
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	CBSS-195102.1.peg.963		
FIG00772846: hypothetical protein	CBSS-195102.1.peg.963		
Propanediol utilization polyhedral body protein PduJ	CBSS-195102.1.peg.963		
Ethanolamine utilization polyhedral-body-like protein EutS	CBSS-195102.1.peg.963		
Malate dehydrogenase (EC 1.1.1.37)	CBSS-195102.1.peg.963		
Ethanolamine utilization protein EutP	CBSS-195102.1.peg.963		
ethanolamine utilization protein eutS	CBSS-195102.1.peg.963		
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)	CBSS-195102.1.peg.963		
Carboxysome protein CcmL	CBSS-195102.1.peg.963		
ethanolamine utilization protein eutM precursor	CBSS-195102.1.peg.963		
FIG00864462: hypothetical protein	CBSS-195102.1.peg.963		
Propanediol utilization polyhedral body protein PduN	CBSS-195102.1.peg.963		
sensory transduction histidine kinase	CBSS-195102.1.peg.963		
ethanolamine utilization response regulator	CBSS-195102.1.peg.963		
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Pyruvate_dehydrogenase_complex	Experimental Subsystems	
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Pyruvate_dehydrogenase_complex	Experimental Subsystems	
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Pyruvate_dehydrogenase_complex	Experimental Subsystems	
Transcriptional repressor for pyruvate dehydrogenase complex	Pyruvate_dehydrogenase_complex	Experimental Subsystems	
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	Pyruvate_dehydrogenase_complex	Experimental Subsystems	
Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)	Pyruvate_dehydrogenase_complex	Experimental Subsystems	
Flavanone-3-hydroxylase (EC 1.14.13.21)	Flavonoids_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Flavanone-3-hydroxylase (EC 1.14.11.9)	Flavonoids_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Flavonol synthase (EC 1.14.11.23)	Flavonoids_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Dihydroflavonol-4-reductase (EC 1.1.1.219)	Flavonoids_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I	Plastidial_(p)ppGpp-mediated_response_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
Undecaprenyl diphosphate synthase (EC 2.5.1.31)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dimethylallyltransferase (EC 2.5.1.1)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Octaprenyl diphosphate synthase (EC 2.5.1.90)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6Z)-farnesyl diphosphate synthase (EC 2.5.1.68)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
trans,polycis-decaprenyl diphosphate synthase [(2Z,6E)-farnesyl diphosphate specific] (EC 2.5.1.86)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Decaprenyl diphosphate synthase (EC 2.5.1.91)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Geranylgeranyl diphosphate reductase (EC 1.3.1.83)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Solanesyl diphosphate synthase (EC 2.5.1.11)	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Menaquinone-specific polyprenyl reductase	Isoprenoinds_for_Quinones	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Acetyl-coenzyme A carboxyl transferase domain of homomeric ACCase (EC 6.4.1.2)	Fatty_acid_biosynthesis_in_plants_(mitochondrial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxyl carrier domain of homomeric Acetyl-CoA carboxylase	Fatty_acid_biosynthesis_in_plants_(mitochondrial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxylase domain of homomeric ACCase (EC 6.3.4.14)	Fatty_acid_biosynthesis_in_plants_(mitochondrial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Fatty_acid_biosynthesis_in_plants_(mitochondrial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial (EC 2.3.1.41)	Fatty_acid_biosynthesis_in_plants_(mitochondrial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enolase (EC 4.2.1.11)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Aconitate hydratase (EC 4.2.1.3)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Altronate dehydratase (EC 4.2.1.7)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Mannonate dehydratase (EC 4.2.1.8)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Dihydroxy-acid dehydratase (EC 4.2.1.9)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
3-dehydroquinate dehydratase II (EC 4.2.1.10)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Tryptophan synthase alpha chain (EC 4.2.1.20)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Tryptophan synthase beta chain (EC 4.2.1.20)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Cystathionine beta-synthase (EC 4.2.1.22)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Fumarate hydratase class II (EC 4.2.1.2)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Phosphogluconate dehydratase (EC 4.2.1.12)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Porphobilinogen synthase (EC 4.2.1.24)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
3-dehydroquinate dehydratase I (EC 4.2.1.10)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
L-arabonate dehydratase (EC 4.2.1.25)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Galactonate dehydratase (EC 4.2.1.6)	EC_4.2.1.1-25_Hydro-lyases	Experimental Subsystems	
Ornithine decarboxylase (EC 4.1.1.17)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Malonyl-CoA decarboxylase (EC 4.1.1.9)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Arginine decarboxylase (EC 4.1.1.19)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Pyruvate decarboxylase (EC 4.1.1.1)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Oxalyl-CoA decarboxylase (EC 4.1.1.8)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Glutamate decarboxylase (EC 4.1.1.15)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Lysine decarboxylase (EC 4.1.1.18)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Biosynthetic arginine decarboxylase (EC 4.1.1.19)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Malonyl-CoA decarboxylase, mitochondrial precursor (EC 4.1.1.9)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Alpha-acetolactate decarboxylase (EC 4.1.1.5)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Aspartate 1-decarboxylase (EC 4.1.1.11)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Carboxynorspermidine decarboxylase (EC 4.1.1.96)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Oxalate decarboxylase (EC 4.1.1.2)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Benzoylformate decarboxylase (EC 4.1.1.7)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Oxalate decarboxylase oxdD (EC 4.1.1.2)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Acetoacetate decarboxylase (EC 4.1.1.4)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
L-aspartate beta-decarboxylase (EC 4.1.1.12)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Lysine decarboxylase, inducible (EC 4.1.1.18)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Lysine decarboxylase 2, constitutive (EC 4.1.1.18)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Arginine decarboxylase, catabolic (EC 4.1.1.19)	EC_4._1._1.-_Carboxy-lyases	Miscellaneous	
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Respiratory_complex_IV_(terminal_cytochrome_c_oxidase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	Respiratory_complex_IV_(terminal_cytochrome_c_oxidase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Respiratory_complex_IV_(terminal_cytochrome_c_oxidase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Cytochrome c oxidase subunit 5b	Respiratory_complex_IV_(terminal_cytochrome_c_oxidase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Probable cytochrome c oxidase subunit 5c	Respiratory_complex_IV_(terminal_cytochrome_c_oxidase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Cytochrome c oxidase subunit 6a	Respiratory_complex_IV_(terminal_cytochrome_c_oxidase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Cytochrome c oxidase subunit 6b	Respiratory_complex_IV_(terminal_cytochrome_c_oxidase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
Lipid-A-disaccharide synthase (EC 2.4.1.182)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also]	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
Arabinose 5-phosphate isomerase (EC 5.3.1.13)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38)	Lipid_A_biosynthesis_in_plants	Cell Wall and Capsule	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate--beta-alanine ligase (EC 6.3.2.1)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
DUF89 domain of unknown function	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase, type II eukaryotic (EC 2.7.7.3)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase (EC 2.7.1.24)	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Peroxisomal long chain acyl-coenzyme A ester carrier	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Mitochondrial coenzyme A transporter	Pantothenate_and_CoA_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Cyanoalanine nitrilase (EC 3.5.5.4)	Nitrilase	Nitrogen Metabolism	
Transcriptional regulator in custer with plant-induced nitrilase	Nitrilase	Nitrogen Metabolism	
Peroxidase (EC 1.11.1.7)	Auxin_degradation	Secondary Metabolism	Plant Hormones
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Tryptophan synthase alpha chain (EC 4.2.1.20)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Tryptophan synthase beta chain (EC 4.2.1.20)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Indole-acetamide hydrolase	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Monoamine oxidase (1.4.3.4)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Indole-3-acetate beta-glucosyltransferase	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Flavonol 3-sulfotransferase (EC 2.8.2.25)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Nitrilase 2 (EC 3.5.5.1)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Putative AUX1-like permease	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
Amidase (EC 3.5.1.4)	Auxin_biosynthesis	Secondary Metabolism	Plant Hormones
UDP-N-acetylglucosamine 4,6-dehydratase (inverting) (EC 4.2.1.115)	Pseudaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
C4 aminotransferase specific for PseB product (PseC, second step of pseudaminic acid biosynthesis)	Pseudaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
UDP-6-deoxy-AltdiNAc hydrolase (PseG, third step of pseudaminic acid biosynthesis)	Pseudaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Pseudaminic acid synthase (EC 4.1.3.-)	Pseudaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Pseudaminic acid biosynthesis protein PseA, possible Pse5Ac7Ac acetamidino synthase	Pseudaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
N-Acetyltransferase PseH involved in the biosynthesis of pseudaminic acid	Pseudaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Pseudaminic acid cytidylyltransferase (EC 2.7.7.43)	Pseudaminic_Acid_Biosynthesis	Cell Wall and Capsule	Capsular and extracellular polysacchrides
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glutamine synthetase type I (EC 6.3.1.2)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycine cleavage system H protein	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Hydroxypyruvate reductase (EC 1.1.1.81)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Serine hydroxymethyltransferase (EC 2.1.2.1)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Phosphoglycolate phosphatase (EC 3.1.3.18)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Photosystem P840 reaction center large subunit PscA	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Catalase (EC 1.11.1.6)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
D-glycerate 3-kinase (EC 2.7.1.31), plant type	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
photosystem I P700 chlorophyll a apoprotein subunit Ia (PsaA)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
photosystem II protein D2 (PsbD)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Expressed protein possibly involved in photorespiration	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycolate oxidase (EC 1.1.3.15)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Malate synthase G (EC 2.3.3.9)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Malyl-CoA lyase (EC 4.1.3.24)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Photosynthetic reaction center L subunit	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Photosynthetic reaction center M subunit	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase (EC 4.1.1.39)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycerate kinase (EC 2.7.1.31)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glycolate permease	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Glyoxylate carboligase (EC 4.1.1.47)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
2-oxoglutarate/malate translocator	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Malate synthase (EC 2.3.3.9)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39)	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	CO2 fixation
Endoribonuclease L-PSP	LUX_MD_RidA	Experimental Subsystems	
Acylphosphate phosphohydrolase (EC 3.6.1.7), putative	LUX_MD_RidA	Experimental Subsystems	
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY	RidA_new	Experimental Subsystems	
RidA	RidA_new	Experimental Subsystems	
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases	RidA_new	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	RidA_new	Experimental Subsystems	
Arsenical pump-driving ATPase (EC 3.6.3.16)	RidA_new	Experimental Subsystems	
thioesterase family protein	RidA_new	Experimental Subsystems	
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	RidA_new	Experimental Subsystems	
Putative 4-hydroxybenzoyl CoA thioesterase (EC 3.1.2.23)	RidA_new	Experimental Subsystems	
Ca ion P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
Mg ion P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA27 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA32 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
Heavy-Metal transporting ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA23 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA25 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
Cu+ P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA30 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
Na+,K+ P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA29 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA24 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA26 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA31 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
FUPA28 P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
H+ P-type ATPase	The_One_P-type_ATPase_Subsystem	Experimental Subsystems	
Phylloquinone-specific isochorismate synthase (EC 5.4.4.2)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Isochorismate synthase (EC 5.4.4.2)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoate synthase (EC 4.2.1.113)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Naphthoate synthase (EC 4.1.3.36)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28), plant type	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG of phylloquinone biosynthesis (EC 2.1.1.-)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Geranylgeranyl diphosphate reductase (EC 1.3.1.83)	Phylloquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
UDP-glucose dehydrogenase (EC 1.1.1.22)	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-glucuronic acid oxidase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305)	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13)	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-)	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Polymyxin resistance protein PmrJ, predicted deacetylase	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Polymyxin resistance protein PmrD	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Polymyxin resistance protein PmrM	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Polymyxin resistance protein PmrG	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	Cell Wall and Capsule	Gram-Negative cell wall components
Transcriptional regulator, MarR family / Acetyltransferase (GNAT)	MarR_transcriptional_regulators_and_GNATs	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	CBSS-208964.1.peg.1012	Clustering-based subsystems	
FIG002207: Probable transmembrane protein	CBSS-208964.1.peg.1012	Clustering-based subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	ZyggS	Experimental Subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	ZyggS	Experimental Subsystems	
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
5'-nucleotidase (EC 3.1.3.5)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
CTP synthase (EC 6.3.4.2)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Cytidine deaminase (EC 3.5.4.5)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Cytidylate kinase (EC 2.7.4.25)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Nucleoside diphosphate kinase (EC 2.7.4.6)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Purine nucleoside phosphorylase (EC 2.4.2.1)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Thioredoxin reductase (EC 1.8.1.9)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Thymidine kinase (EC 2.7.1.21)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Thymidylate kinase (EC 2.7.4.9)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Thymidylate synthase (EC 2.1.1.45)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Uracil phosphoribosyltransferase (EC 2.4.2.9)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Uridine kinase (EC 2.7.1.48) [C1]	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Cytosine deaminase (EC 3.5.4.1)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Deoxycytidine triphosphate deaminase (EC 3.5.4.13)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Thymidine phosphorylase (EC 2.4.2.4)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Uridine phosphorylase (EC 2.4.2.3)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Uridine kinase (EC 2.7.1.48)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Deoxycytidine triphosphate deaminase (EC 3.5.4.30) (dUMP-forming)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6)	pyrimidine_conversions	Nucleosides and Nucleotides	Pyrimidines
Uracil phosphoribosyltransferase (EC 2.4.2.9)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
5'-nucleotidase (EC 3.1.3.5)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Uridine kinase (EC 2.7.1.48)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Purine nucleoside phosphorylase (EC 2.4.2.1)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Cytidylate kinase (EC 2.7.4.25)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Nucleoside diphosphate kinase (EC 2.7.4.6)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
CTP synthase (EC 6.3.4.2)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Cytosine deaminase (EC 3.5.4.1)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Thioredoxin reductase (EC 1.8.1.9)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Cytidine deaminase (EC 3.5.4.5)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Thymidine kinase (EC 2.7.1.21)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Thymidylate kinase (EC 2.7.4.9)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Thymidylate synthase (EC 2.1.1.45)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Uridine phosphorylase (EC 2.4.2.3)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Thymidine phosphorylase (EC 2.4.2.4)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Deoxycytidine triphosphate deaminase (EC 3.5.4.13)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
ATP diphosphatase (EC 3.6.1.8)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
Deoxycytidine kinase (EC 2.7.1.74)	pyrimidine_conversions_v2	Experimental Subsystems	Pyrimidines
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartokinase (EC 2.7.2.4)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate decarboxylase (EC 4.1.1.20)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate epimerase (EC 5.1.1.7)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
LL-diaminopimelate aminotransferase, predicted alternative	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	TrmE_experimental	Experimental Subsystems	
GTPase and tRNA-U34 5-formylation enzyme TrmE	TrmE_experimental	Experimental Subsystems	
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	TrmE_experimental	Experimental Subsystems	
Endonuclease III (EC 4.2.99.18)	TrmE_experimental	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	TrmE_experimental	Experimental Subsystems	
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	TrmE_experimental	Experimental Subsystems	
Formate dehydrogenase chain D (EC 1.2.1.2)	TrmE_experimental	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	TrmE_experimental	Experimental Subsystems	
Iron-sulfur cluster assembly ATPase protein SufC	TrmE_experimental	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufB	TrmE_experimental	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	TrmE_experimental	Experimental Subsystems	
Flavoprotein MioC	TrmE_experimental	Experimental Subsystems	
YidD	TrmE_experimental	Experimental Subsystems	
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	TrmE_experimental	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	TrmE_experimental	Experimental Subsystems	
Formaldehyde activating enzyme	TrmE_experimental	Experimental Subsystems	
OxaI/YidC membrane insertion protein	TrmE_experimental	Experimental Subsystems	
tRNA:m(5)U-54 MTase gid	TrmE_experimental	Experimental Subsystems	
Cytochrome b6-f complex iron-sulfur subunit PetC1 (Rieske iron sulfur protein EC 1.10.9.1)	TrmE_experimental	Experimental Subsystems	
Gfa-like protein	TrmE_experimental	Experimental Subsystems	
Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22)	TrmE_experimental	Experimental Subsystems	
Anaerobic sulfite reductase subunit C	TrmE_experimental	Experimental Subsystems	
COG0354: Predicted aminomethyltransferase related to GcvT	XXBobCopyTrmE	Experimental Subsystems	
GTPase and tRNA-U34 5-formylation enzyme TrmE	XXBobCopyTrmE	Experimental Subsystems	
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	XXBobCopyTrmE	Experimental Subsystems	
OxaI/YidC membrane insertion protein	XXBobCopyTrmE	Experimental Subsystems	
Endonuclease III (EC 4.2.99.18)	XXBobCopyTrmE	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	XXBobCopyTrmE	Experimental Subsystems	
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	XXBobCopyTrmE	Experimental Subsystems	
Formate dehydrogenase chain D (EC 1.2.1.2)	XXBobCopyTrmE	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	XXBobCopyTrmE	Experimental Subsystems	
Iron-sulfur cluster assembly ATPase protein SufC	XXBobCopyTrmE	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufB	XXBobCopyTrmE	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	XXBobCopyTrmE	Experimental Subsystems	
Flavoprotein MioC	XXBobCopyTrmE	Experimental Subsystems	
YidD	XXBobCopyTrmE	Experimental Subsystems	
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	XXBobCopyTrmE	Experimental Subsystems	
Cytochrome b6-f complex iron-sulfur subunit PetC1 (Rieske iron sulfur protein EC 1.10.9.1)	XXBobCopyTrmE	Experimental Subsystems	
tRNA:m(5)U-54 MTase gid	XXBobCopyTrmE	Experimental Subsystems	
Anaerobic sulfite reductase subunit C	XXBobCopyTrmE	Experimental Subsystems	
Cytochrome b6-f complex subunit V (PetG)	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex subunit, apocytochrome f	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex iron-sulfur subunit PetC1 (Rieske iron sulfur protein EC 1.10.9.1)	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex alternative Rieske iron sulfur protein PetC2	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex alternative Rieske iron sulfur protein PetC3	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex subunit, cytochrome b6	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex subunit IV (PetD)	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex subunit VII (PetM)	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex subunit VIII (PetN)	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Ferredoxin-NADP(+) reductase (EC 1.18.1.2)	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex subunit VI (PetL)	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Cytochrome b6-f complex subunit, cytochrome b6, putative	Cytochrome_b6-f_complex_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial terminal oxidase, plastoquinol:oxygen oxidoreductase (EC 1.10.3.-)	Quinol_oxidases_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
outer membrane protein, MtrB	Respiratory_Systems_-_Shewanella_(updated)		
periplasmic decaheme cytochrome c, MtrA	Respiratory_Systems_-_Shewanella_(updated)		
surface localized decaheme cytochrome c lipoprotein, MtrC	Respiratory_Systems_-_Shewanella_(updated)		
surface localized decaheme cytochrome c lipoprotein, OmcA	Respiratory_Systems_-_Shewanella_(updated)		
surface localized undecaheme cytochrome c lipoprotein, UndB	Respiratory_Systems_-_Shewanella_(updated)		
surface localized decaheme cytochrome c lipoprotein, MtrH	Respiratory_Systems_-_Shewanella_(updated)		
surface localized decaheme cytochrome c lipoprotein, MtrF	Respiratory_Systems_-_Shewanella_(updated)		
outer membrane protein, MtrE	Respiratory_Systems_-_Shewanella_(updated)		
periplasmic decaheme cytochrome c, MtrD	Respiratory_Systems_-_Shewanella_(updated)		
Membrane anchored tetraheme cytochrome c, CymA	Respiratory_Systems_-_Shewanella_(updated)		
Fumarate reductase tetraheme cytochrome-c, FccA	Respiratory_Systems_-_Shewanella_(updated)		
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Respiratory_Systems_-_Shewanella_(updated)		
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Respiratory_Systems_-_Shewanella_(updated)		
periplasmic c-type cytochrome, DmsE	Respiratory_Systems_-_Shewanella_(updated)		
outer membrane protein, DmsF	Respiratory_Systems_-_Shewanella_(updated)		
Trimethylamine-N-oxide reductase (EC 1.6.6.9), TorA	Respiratory_Systems_-_Shewanella_(updated)		
inner membrane pentaheme c-type cytochrome, TorC	Respiratory_Systems_-_Shewanella_(updated)		
TorA-specific chaperone protein, TorD	Respiratory_Systems_-_Shewanella_(updated)		
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Respiratory_Systems_-_Shewanella_(updated)		
Nitrate reductase cytochrome c550-type subunit	Respiratory_Systems_-_Shewanella_(updated)		
Periplasmic nitrate reductase component NapD	Respiratory_Systems_-_Shewanella_(updated)		
Cytochrome c-type protein NapC	Respiratory_Systems_-_Shewanella_(updated)		
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Respiratory_Systems_-_Shewanella_(updated)		
Polyferredoxin NapH (periplasmic nitrate reductase)	Respiratory_Systems_-_Shewanella_(updated)		
cytoplasmic non-heme iron-sulphur protein, NapF	Respiratory_Systems_-_Shewanella_(updated)		
NrfD protein	Respiratory_Systems_-_Shewanella_(updated)		
Periplasmic nitrate reductase component NapE	Respiratory_Systems_-_Shewanella_(updated)		
surface localized undecaheme cytochrome c lipoprotein, UndA	Respiratory_Systems_-_Shewanella_(updated)		
surface localized decaheme cytochrome c lipoprotein, MtrG	Respiratory_Systems_-_Shewanella_(updated)		
periplasmic pentaheme electron-transfer protein, NrfB	Respiratory_Systems_-_Shewanella_(updated)		
L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Homoaconitase large subunit (EC 4.2.1.36)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Homoaconitase small subunit (EC 4.2.1.36)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Maleate hydratase large subunit (EC 4.2.1.31)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
(R)-2-methylmalate dehydratase large subunit (EC 4.2.1.35)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Coenzyme B synthesis from 2-oxoglutarate: steps 4, 7, 8, 11, and 12 [large subunit]	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Coenzyme B synthesis from 2-oxoglutarate: steps 4, 7, 8, 11, and 12 [small subunit]	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Maleate hydratase small subunit (EC 4.2.1.31)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
(R)-2-methylmalate dehydratase small subunit (EC 4.2.1.35)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
GDP-mannose 4,6-dehydratase (EC 4.2.1.47)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Gluconate dehydratase (EC 4.2.1.39)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Urocanate hydratase (EC 4.2.1.49)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Inosose dehydratase (EC 4.2.1.44)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
CDP-glucose 4,6-dehydratase (EC 4.2.1.45)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Glucarate dehydratase (EC 4.2.1.40)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
D-galactarate dehydratase (EC 4.2.1.42)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Propanediol dehydratase large subunit (EC 4.2.1.28)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Propanediol dehydratase medium subunit (EC 4.2.1.28)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Propanediol dehydratase small subunit (EC 4.2.1.28)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Glycerol dehydratase large subunit (EC 4.2.1.30)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Glycerol dehydratase medium subunit (EC 4.2.1.30)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
Glycerol dehydratase small subunit (EC 4.2.1.30)	EC_4.2.1.26-50_Hydro-lyases	Experimental Subsystems	
hypothetical protein	CBSS-227321.4.peg.3751		
hypothetical protein ( (AF192405) putative cyanide hydratase [Leptosphaeria maculans] )	CBSS-227321.4.peg.3751		
Mobile element protein	CBSS-227321.4.peg.3751		
Transcriptional regulator, AraC family	CBSS-227321.4.peg.3751		
ABC transporter permease protein	CBSS-227321.4.peg.3751		
ABC transporter ATP-binding protein	CBSS-227321.4.peg.3751		
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)	CBSS-227321.4.peg.3751		
TonB-dependent receptor	CBSS-227321.4.peg.3751		
Transposase	CBSS-227321.4.peg.3751		
Aliphatic nitrilase (EC 3.5.5.7)	CBSS-227321.4.peg.3751		
putative transcriptional regulator	CBSS-227321.4.peg.3751		
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)	CBSS-227321.4.peg.3751		
Outer membrane receptor proteins, mostly Fe transport	CBSS-227321.4.peg.3751		
nitrilase, putative	CBSS-227321.4.peg.3751		
blr6399	CBSS-227321.4.peg.3751		
probable ABC transporter permease protein	CBSS-227321.4.peg.3751		
Bll2902 protein	CBSS-227321.4.peg.3751		
Nitrilase (EC 3.5.5.1)	CBSS-227321.4.peg.3751		
FIG00446787: hypothetical protein	CBSS-227321.4.peg.3751		
Cyanide hydratase (EC 4.2.1.66)	CBSS-227321.4.peg.3751		
Nitrilase (EC 3.5.5.7)	CBSS-227321.4.peg.3751		
FIG00861718: hypothetical protein	CBSS-227321.4.peg.3751		
Aldoxime dehydratase	CBSS-227321.4.peg.3751		
Phenylacetaldoxime dehydratase (EC 4.99.1.7)	CBSS-227321.4.peg.3751		
Prephenate dehydratase (EC 4.2.1.51)	EC_4.2.1.51-75_Hydro-lyases	Experimental Subsystems	
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59)	EC_4.2.1.51-75_Hydro-lyases	Experimental Subsystems	
Uroporphyrinogen-III synthase (EC 4.2.1.75)	EC_4.2.1.51-75_Hydro-lyases	Experimental Subsystems	
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55)	EC_4.2.1.51-75_Hydro-lyases	Experimental Subsystems	
Oleate hydratase (EC 4.2.1.53)	EC_4.2.1.51-75_Hydro-lyases	Experimental Subsystems	
L-fuconate dehydratase (EC 4.2.1.68)	EC_4.2.1.51-75_Hydro-lyases	Experimental Subsystems	
Pseudouridylate synthase (EC 4.2.1.70)	EC_4.2.1.51-75_Hydro-lyases	Experimental Subsystems	
Gallic acid utilization transcriptional regulator, LysR family	Gallic_acid_utilization	Metabolism of Aromatic Compounds	
Gallic acid utilization outer membrane porin	Gallic_acid_utilization	Metabolism of Aromatic Compounds	
Gallate permease	Gallic_acid_utilization	Metabolism of Aromatic Compounds	
Gallate dioxygenase (EC 1.13.11.57)	Gallic_acid_utilization	Metabolism of Aromatic Compounds	
4-oxalomesaconate tautomerase (EC 5.3.2.8)	Gallic_acid_utilization	Metabolism of Aromatic Compounds	
4-oxalmesaconate hydratase (EC 4.2.1.83)	Gallic_acid_utilization	Metabolism of Aromatic Compounds	
4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17)	Gallic_acid_utilization	Metabolism of Aromatic Compounds	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis monooxygenase UbiB	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoate synthase (EC 4.2.1.113)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG (EC 2.1.1.163)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone via futalosine step 1	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Naphthoate synthase (EC 4.1.3.36)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Isochorismate synthase (EC 5.4.4.2)	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in phylloquinone biosynthesis	Menaquinone_biosynthesis_from_chorismate_via_1,4-dihydroxy-2-naphthoate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
FIG023911: putative membrane protein	CBSS-316275.9.peg.382	Clustering-based subsystems	
FIG001826: inner membrane protein	CBSS-316275.9.peg.382	Clustering-based subsystems	
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-threonine 3-dehydrogenase (EC 1.1.1.103)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-threonine transporter, anaerobically inducible	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Low-specificity L-threonine aldolase (EC 4.1.2.48)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine catabolic operon transcriptional activator TdcR	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine dehydratase, catabolic (EC 4.3.1.19)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine dehydratase (EC 4.3.1.19)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine dehydrogenase and related Zn-dependent dehydrogenases	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Ornithine cyclodeaminase (EC 4.3.1.12)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
low-specificity D-threonine aldolase	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-aminolevulinate synthase (EC 2.3.1.37)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
FIG003492: Threonine dehydrogenase and related Zn-dependent dehydrogenases	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-allo-threonine aldolase (EC 2.1.2.1)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Amine oxidase [flavin-containing] (EC 1.4.3.4)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Monoamine oxidase (1.4.3.4)	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-allo-threonine aldolase	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
threonine dehydrogenase	Threonine_degradation	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19)	polyamine_halophile_LP	Experimental Subsystems	
Deoxyhypusine synthase (EC 2.5.1.46)	polyamine_halophile_LP	Experimental Subsystems	
Eukaryotic translation initiation factor 5A	polyamine_halophile_LP	Experimental Subsystems	
Agmatinase (EC 3.5.3.11)	polyamine_halophile_LP	Experimental Subsystems	
Translation elongation factor 1 alpha subunit	polyamine_halophile_LP	Experimental Subsystems	
Alanyl-tRNA synthetase (EC 6.1.1.7)	CBSS-257314.1.peg.488	Clustering-based subsystems	Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase	CBSS-257314.1.peg.488	Clustering-based subsystems	Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase
Putative Holliday junction resolvase YqgF	CBSS-257314.1.peg.488	Clustering-based subsystems	Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase
Alanyl-tRNA synthetase (EC 6.1.1.7)	CBSS-279010.5.peg.3195	Clustering-based subsystems	
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase	CBSS-279010.5.peg.3195	Clustering-based subsystems	
Putative Holliday junction resolvase YqgF	CBSS-279010.5.peg.3195	Clustering-based subsystems	
Ortholog of S. aureus MRSA252 (BX571856) SAR1694	CBSS-279010.5.peg.3195	Clustering-based subsystems	
Alanyl-tRNA synthetase (EC 6.1.1.7)	CBSS-281090.3.peg.464	Clustering-based subsystems	
FIG004453: protein YceG like	CBSS-281090.3.peg.464	Clustering-based subsystems	
Putative Holliday junction resolvase YqgF	CBSS-281090.3.peg.464	Clustering-based subsystems	
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	CBSS-281090.3.peg.464	Clustering-based subsystems	
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	CBSS-318161.14.peg.2599	Clustering-based subsystems	
Glutathione synthetase (EC 6.3.2.3)	CBSS-318161.14.peg.2599	Clustering-based subsystems	
UPF0301 protein YqgE	CBSS-318161.14.peg.2599	Clustering-based subsystems	
Putative Holliday junction resolvase YqgF	CBSS-318161.14.peg.2599	Clustering-based subsystems	
UPF0301 protein YqgE	CBSS-320372.3.peg.6046	Clustering-based subsystems	
Putative Holliday junction resolvase YqgF	CBSS-320372.3.peg.6046	Clustering-based subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	CBSS-320372.3.peg.6046	Clustering-based subsystems	
Glutathione synthetase (EC 6.3.2.3)	CBSS-320372.3.peg.6046	Clustering-based subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	CBSS-320372.3.peg.6046	Clustering-based subsystems	
Hypothetical protein perhaps functionally coupled to transcription elongation factor GreA	uridine_kinase_cluster_1	Experimental Subsystems	
Transcription elongation factor GreA	uridine_kinase_cluster_1	Experimental Subsystems	
Uridine kinase (EC 2.7.1.48) [C1]	uridine_kinase_cluster_1	Experimental Subsystems	
FIG011945: O-methyltransferase family protein	uridine_kinase_cluster_1	Experimental Subsystems	
peptidase, U32 family large subunit [C1]	uridine_kinase_cluster_1	Experimental Subsystems	
peptidase, U32 family small subunit [C1]	uridine_kinase_cluster_1	Experimental Subsystems	
FIG004453: protein YceG like	uridine_kinase_cluster_1	Experimental Subsystems	
Putative Holliday junction resolvase YqgF	uridine_kinase_cluster_1	Experimental Subsystems	
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase	uridine_kinase_cluster_1	Experimental Subsystems	
Alanyl-tRNA synthetase (EC 6.1.1.7)	uridine_kinase_cluster_1	Experimental Subsystems	
Methionyl-tRNA synthetase (EC 6.1.1.10)	uridine_kinase_cluster_1	Experimental Subsystems	
Deoxycytidine triphosphate deaminase (EC 3.5.4.13)	uridine_kinase_cluster_1	Experimental Subsystems	
FIG019413: Mrp protein	uridine_kinase_cluster_1	Experimental Subsystems	
AsmA protein	uridine_kinase_cluster_1	Experimental Subsystems	
Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19)	polyamine_halophile_LP2	Experimental Subsystems	
Deoxyhypusine synthase (EC 2.5.1.46)	polyamine_halophile_LP2	Experimental Subsystems	
Eukaryotic translation initiation factor 5A	polyamine_halophile_LP2	Experimental Subsystems	
Agmatinase (EC 3.5.3.11)	polyamine_halophile_LP2	Experimental Subsystems	
Translation elongation factor 1 alpha subunit	polyamine_halophile_LP2	Experimental Subsystems	
Cobalt-zinc-cadmium resistance protein	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Large-conductance mechanosensitive channel	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Trk system potassium uptake protein TrkA	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
OsmC/Ohr family protein	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Rhodanese-like domain protein	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Kup system potassium uptake protein	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Fatty acid desaturase (EC 1.14.19.1)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Glutathione-regulated potassium-efflux system protein KefB	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Glutathione-regulated potassium-efflux system protein KefC	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Cyclic AMP receptor protein	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Glutathione-regulated potassium-efflux system ATP-binding protein	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Glutathione-regulated potassium-efflux system ancillary protein KefG	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Protein SlyX	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusC	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusD	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
putative Glutathione-regulated potassium-efflux system protein KefB	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
ElaA protein	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
diguanylate cyclase (GGDEF domain) with PAS/PAC sensor	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Rubredoxin-NAD(+) reductase (EC 1.18.1.1)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Phosphoribulokinase (EC 2.7.1.19)	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Glutathione-regulated potassium-efflux system ancillary protein KefF	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Glutathione-regulated potassium-efflux system protein KefKL	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Potassium efflux system YjeP	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
Potassium efflux system f786	Glutathione-regulated_potassium-efflux_system_and_associated_functions	Potassium metabolism	
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Phosphate_metabolism	Phosphorus Metabolism	
Alkaline phosphatase (EC 3.1.3.1)	Phosphate_metabolism	Phosphorus Metabolism	
Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly	Phosphate_metabolism	Phosphorus Metabolism	
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate starvation-inducible protein PhoH, predicted ATPase	Phosphate_metabolism	Phosphorus Metabolism	
Polyphosphate kinase (EC 2.7.4.1)	Phosphate_metabolism	Phosphorus Metabolism	
Predicted ATPase related to phosphate starvation-inducible protein PhoH	Phosphate_metabolism	Phosphorus Metabolism	
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP	Phosphate_metabolism	Phosphorus Metabolism	
Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	Phosphate_metabolism	Phosphorus Metabolism	
Probable low-affinity inorganic phosphate transporter	Phosphate_metabolism	Phosphorus Metabolism	
Sodium-dependent phosphate transporter	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate transport regulator (distant homolog of PhoU)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate transport system regulatory protein PhoU	Phosphate_metabolism	Phosphorus Metabolism	
Apolipoprotein N-acyltransferase (EC 2.3.1.-)	Phosphate_metabolism	Phosphorus Metabolism	
Exopolyphosphatase (EC 3.6.1.11)	Phosphate_metabolism	Phosphorus Metabolism	
Inorganic pyrophosphatase (EC 3.6.1.1)	Phosphate_metabolism	Phosphorus Metabolism	
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	Phosphate_metabolism	Phosphorus Metabolism	
Pyrophosphate-energized proton pump (EC 3.6.1.1)	Phosphate_metabolism	Phosphorus Metabolism	
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (EC 3.6.1.40)	Phosphate_metabolism	Phosphorus Metabolism	
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)	Phosphate_metabolism	Phosphorus Metabolism	
Low-affinity inorganic phosphate transporter	Phosphate_metabolism	Phosphorus Metabolism	
Magnesium and cobalt efflux protein CorC	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate regulon transcriptional regulatory protein PhoB (SphR)	Phosphate_metabolism	Phosphorus Metabolism	
Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)	Phosphate_metabolism	Phosphorus Metabolism	
Phosphatase, Ppx/GppA family	Phosphate_metabolism	Phosphorus Metabolism	
Phosphate-specific outer membrane porin OprP	Phosphate_metabolism	Phosphorus Metabolism	
Pyrophosphate-specific outer membrane porin OprO	Phosphate_metabolism	Phosphorus Metabolism	
putative alkaline phosphatase-like protein	Phosphate_metabolism	Phosphorus Metabolism	
Inorganic pyrophospatase PpaX (EC 3.1.3.18)	Phosphate_metabolism	Phosphorus Metabolism	
Na/Pi cotransporter II-related protein	Phosphate_metabolism	Phosphorus Metabolism	
response regulator in two-component regulatory system with PhoQ	Phosphate_metabolism	Phosphorus Metabolism	
Putative periplasmic phosphate-binding protein PstS (Mycoplasma type)	Phosphate_metabolism	Phosphorus Metabolism	
Alkaline phosphatase like protein	Phosphate_metabolism	Phosphorus Metabolism	
secreted alkaline phosphatase	Phosphate_metabolism	Phosphorus Metabolism	
Distant similarity with phosphate transport system regulator	Phosphate_metabolism	Phosphorus Metabolism	
Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog	CBSS-56780.10.peg.1536	Clustering-based subsystems	
Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly	CBSS-56780.10.peg.1536	Clustering-based subsystems	
Phosphate starvation-inducible protein PhoH, predicted ATPase	CBSS-56780.10.peg.1536	Clustering-based subsystems	
Magnesium and cobalt efflux protein CorC	CBSS-56780.10.peg.1536	Clustering-based subsystems	
Heme-regulated cyclic AMP phosphodiesterase (EC 3.1.4.-)	Putative_hemin_transporter	Clustering-based subsystems	
Hemin ABC transporter, permease protein	Putative_hemin_transporter	Clustering-based subsystems	
Hemolysins and related proteins containing CBS domains	Putative_hemin_transporter	Clustering-based subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	Putative_hemin_transporter	Clustering-based subsystems	
Magnesium and cobalt efflux protein CorC	Putative_hemin_transporter	Clustering-based subsystems	
Phosphate starvation-inducible protein PhoH, predicted ATPase	Putative_hemin_transporter	Clustering-based subsystems	
Putative Heme-regulated two-component response regulator	Putative_hemin_transporter	Clustering-based subsystems	
Putative hemin-binding lipoprotein	Putative_hemin_transporter	Clustering-based subsystems	
Thioredoxin reductase (EC 1.8.1.9)	Putative_hemin_transporter	Clustering-based subsystems	
Zinc uptake regulation protein ZUR	Putative_hemin_transporter	Clustering-based subsystems	
Putative hemine transporter ATP-binding subunit	Putative_hemin_transporter	Clustering-based subsystems	
puatative hemin transporter subunit	Putative_hemin_transporter	Clustering-based subsystems	
putative hemin permease	Putative_hemin_transporter	Clustering-based subsystems	
Magnesium transporter	Putative_hemin_transporter	Clustering-based subsystems	
Iron-responsive regulator Irr	Putative_hemin_transporter	Clustering-based subsystems	
Fe2+/Zn2+ uptake regulation proteins	Putative_hemin_transporter	Clustering-based subsystems	
Ferric uptake regulation protein	Putative_hemin_transporter	Clustering-based subsystems	
Transcriptional regulator, FUR family	Putative_hemin_transporter	Clustering-based subsystems	
Peroxide stress regulator PerR, FUR family	Putative_hemin_transporter	Clustering-based subsystems	
probable Mg2+ transport protein	Putative_hemin_transporter	Clustering-based subsystems	
iron-regulated outer membrane protein FrpB	Putative_hemin_transporter	Clustering-based subsystems	
Apolipoprotein N-acyltransferase (EC 2.3.1.-)	tRNA-methylthiotransferase_containing_cluster	Clustering-based subsystems	
Copper homeostasis protein CutE	tRNA-methylthiotransferase_containing_cluster	Clustering-based subsystems	
Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly	tRNA-methylthiotransferase_containing_cluster	Clustering-based subsystems	
Magnesium and cobalt efflux protein CorC	tRNA-methylthiotransferase_containing_cluster	Clustering-based subsystems	
Phosphate starvation-inducible protein PhoH, predicted ATPase	tRNA-methylthiotransferase_containing_cluster	Clustering-based subsystems	
tRNA-i(6)A37 methylthiotransferase	tRNA-methylthiotransferase_containing_cluster	Clustering-based subsystems	
Uncharacterized protein, Bsl7517 homolog	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130)	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also]	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
TldE protein, part of TldE/TldD proteolytic complex	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
FIG043197: Inositol monophosphatase family protein	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
FIG146212: Enoyl-CoA hydratase (EC 4.2.1.17)	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
FIG081201: hypothetical protein	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
FIG062860: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
Protein of unknown function DUF374	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
Lipid A export ATP-binding/permease protein MsbA	Lipopolysaccharide-related_cluster_in_Alphaproteobacteria	Cell Wall and Capsule	Gram-Negative cell wall components
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	CBSS-316057.3.peg.563	Clustering-based subsystems	
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1	CBSS-316057.3.peg.563	Clustering-based subsystems	
Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion	CBSS-316057.3.peg.563	Clustering-based subsystems	
conserved hypothetical protein in cyt c oxidase gene clusters	CBSS-316057.3.peg.563	Clustering-based subsystems	
TldD protein, part of TldE/TldD proteolytic complex	CBSS-316057.3.peg.563	Clustering-based subsystems	
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	CBSS-316057.3.peg.563	Clustering-based subsystems	
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	CBSS-316057.3.peg.563	Clustering-based subsystems	
FIG003879: Predicted amidohydrolase	CBSS-354.1.peg.2917	Clustering-based subsystems	TldD cluster
FIG005080: Possible exported protein	CBSS-354.1.peg.2917	Clustering-based subsystems	TldD cluster
TldD protein, part of TldE/TldD proteolytic complex	CBSS-354.1.peg.2917	Clustering-based subsystems	TldD cluster
Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)	CBSS-354.1.peg.2917	Clustering-based subsystems	TldD cluster
Septum formation protein Maf	CBSS-354.1.peg.2917	Clustering-based subsystems	TldD cluster
Rod shape-determining protein MreC	CBSS-354.1.peg.2917	Clustering-based subsystems	TldD cluster
Rod shape-determining protein MreD	CBSS-354.1.peg.2917	Clustering-based subsystems	TldD cluster
FIG138315: Putative alpha helix protein	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
TldE protein, part of TldE/TldD proteolytic complex	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
TldD protein, part of TldE/TldD proteolytic complex	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
TldE/PmbA family protein, Beta/Gamma-proteobacterial subgroup	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
TldD family protein, Beta/Gamma-proteobacterial subgroup	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
TldE/PmbA family protein, Actinobacterial subgroup	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
TldD family protein, Actinobacterial subgroup	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
TldD-domain protein	Putative_TldE-TldD_proteolytic_complex	Protein Metabolism	Protein degradation
photosystem I P700 chlorophyll a apoprotein subunit Ia (PsaA)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I P700 chlorophyll a apoprotein subunit Ib (PsaB)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I assembly related protein Ycf3	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I assembly related protein Ycf37	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I assembly related protein Ycf4	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I iron-sulfur center subunit VII (PsaC)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit II (PsaD)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit III precursor, plastocyanin (cyt c553) docking protein (PsaF)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit IV (PsaE)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit IX (PsaJ)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit VIII (PsaI)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit X (PsaK, PsaK1)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit XI (PsaL)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit XII (PsaM)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
Ferredoxin-NADP(+) reductase (EC 1.18.1.2)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
alternative photosystem I reaction center subunit X (PsaK2)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I biogenesis protein BtpA	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I 4.8K protein (PsaX)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit VI (PsaH)	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit PsaP	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit PsaG	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit PsaO	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
photosystem I subunit PsaN	Photosystem_I	Photosynthesis	Electron transport and photophosphorylation
Acyl carrier protein	DUF89_+_genomes_RZ	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	DUF89_+_genomes_RZ	Experimental Subsystems	
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	DUF89_+_genomes_RZ	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	DUF89_+_genomes_RZ	Experimental Subsystems	
DUF89 domain of unknown function	DUF89_+_genomes_RZ	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	DUF89_+_genomes_RZ	Experimental Subsystems	
Acyl carrier protein phosphodiesterase (EC 3.1.4.14)	DUF89_+_genomes_RZ	Experimental Subsystems	
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 1, NDHA	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 2, NDHB	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 3, NDHC	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 5, NDHF	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 4, NDHD	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 4L, NDHE	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) chain 6, NDHG	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit H, NDHH	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit I, NDHI	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit J, NDHJ	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit K, NDHK	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NAD(P)H-plastoquinone oxidoreductase (EC 1.6.5.-) subunit M, NDHM	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
Protein PIFI, nuclear-encoded factor required for plastidial NAD(P)H dehydrogenase	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
PsbQ-like (PQL) protein, required for formation and activity of plastidial NAD(P)H dehydrogenase complex	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NADH dehydrogenase subunit 4, Involved in CO2 fixation	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NADH dehydrogenase subunit 5, Involved in CO2 fixation	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
NADH dehydrogenase I subunit 4, Involved in photosystem-1 cyclic electron flow	Respiratory_complex_I_in_plants_(plastidial)_and_cyanobacteria	Respiration	Plastidial (cyanobacterial) electron transport system
GTP cyclohydrolase III (EC 3.5.4.29)	Experimental-FO	Experimental Subsystems	
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Experimental-FO	Experimental Subsystems	
Adenosine deaminase (EC 3.5.4.4), alternative form	Experimental-FO	Experimental Subsystems	
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	Experimental-FO	Experimental Subsystems	
Creatinine amidohydrolase (EC 3.5.2.10)	Experimental-FO	Experimental Subsystems	
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1	Experimental-FO	Experimental Subsystems	
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2	Experimental-FO	Experimental Subsystems	
Lactyl (2) diphospho-(5')guanosine:7,8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase	Experimental-FO	Experimental Subsystems	
Coenzyme F420-0:L-glutamate ligase	Experimental-FO	Experimental Subsystems	
Coenzyme F420-1:L-glutamate ligase	Experimental-FO	Experimental Subsystems	
CofC, F420 2-Phospho-l-lactate Guanylyltransferase	Experimental-FO	Experimental Subsystems	
NADPH-dependent F420 reductase	Experimental-FO	Experimental Subsystems	
tRNA dihydrouridine synthase B like	Experimental-FO	Experimental Subsystems	
Triphosphoribosyl-dephospho-CoA synthetase	Experimental-FO	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	Experimental-FO	Experimental Subsystems	
Coenzyme gamma-F420-2:L-glutamate ligase	Experimental-FO	Experimental Subsystems	
IMP cyclohydrolase (EC 3.5.4.10) [alternate form]	Experimental-FO	Experimental Subsystems	
PTPS-like type 4	Experimental-FO	Experimental Subsystems	
Threonine dehydrogenase and related Zn-dependent dehydrogenases	Experimental-FO	Experimental Subsystems	
Vng1025h	Experimental-FO	Experimental Subsystems	
CDP-alcohol phosphatidyltransferase( EC:2.7.8.- )	Experimental-FO	Experimental Subsystems	
FO biosynthesis ArfB	Experimental-FO	Experimental Subsystems	
Glycosyl transferase, group 1	Experimental-FO	Experimental Subsystems	
F420-dependent glucose-6-phosphate dehydrogenase	Experimental-FO	Experimental Subsystems	
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Experimental-FO	Experimental Subsystems	
2,5-diamino-6-ribitylamino-pyrimidinone 5-phosphate deaminase, fungal (EC 3.5.4.-)	Experimental-FO	Experimental Subsystems	
Ca ion P-type ATPase	Family_02_Ca2+_P-type_ATPase		
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	Family_02_Ca2+_P-type_ATPase		
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Family_02_Ca2+_P-type_ATPase		
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Family_02_Ca2+_P-type_ATPase		
Protein crcB homolog 1	Family_02_Ca2+_P-type_ATPase		
Protein crcB homolog 2	Family_02_Ca2+_P-type_ATPase		
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)	Family_02_Ca2+_P-type_ATPase		
S-adenosylmethionine synthetase (EC 2.5.1.6)	Family_02_Ca2+_P-type_ATPase		
DNA recombination and repair protein RecF	Family_02_Ca2+_P-type_ATPase		
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Family_02_Ca2+_P-type_ATPase		
Cell division protein FtsX	Family_02_Ca2+_P-type_ATPase		
ThiJ/PfpI family protein	Family_02_Ca2+_P-type_ATPase		
Aldehyde dehydrogenase (EC 1.2.1.3)	Family_02_Ca2+_P-type_ATPase		
Fumarate hydratase class II (EC 4.2.1.2)	Family_02_Ca2+_P-type_ATPase		
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	Family_02_Ca2+_P-type_ATPase		
Universal stress protein A (UspA)	Family_02_Ca2+_P-type_ATPase		
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	Family_02_Ca2+_P-type_ATPase		
Protoporphyrinogen oxidase (EC 1.3.3.4)	Family_02_Ca2+_P-type_ATPase		
Universal stress protein UspA and related nucleotide-binding proteins	Family_02_Ca2+_P-type_ATPase		
Transglutaminase-like enzymes, putative cysteine proteases	Family_02_Ca2+_P-type_ATPase		
2x Universal stress protein A (2UspA)	Family_02_Ca2+_P-type_ATPase		
Metal-dependent hydrolase	Family_02_Ca2+_P-type_ATPase		
Na+/H+ antiporter NhaD type	Family_02_Ca2+_P-type_ATPase		
Na+/H+ antiporter NapA	Family_02_Ca2+_P-type_ATPase		
[NiFe] hydrogenase metallocenter assembly protein HypD	Family_02_Ca2+_P-type_ATPase		
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)	Family_02_Ca2+_P-type_ATPase		
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	Family_02_Ca2+_P-type_ATPase		
Metallo-beta-lactamase family protein, RNA-specific	Family_02_Ca2+_P-type_ATPase		
iron-sulfur cluster-binding protein	Family_02_Ca2+_P-type_ATPase		
Molybdopterin converting factor small subunit	Family_02_Ca2+_P-type_ATPase		
Molybdenum cofactor biosynthesis protein MoeA2	Family_02_Ca2+_P-type_ATPase		
Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA	Family_02_Ca2+_P-type_ATPase		
Probable protease htpX homolog	Family_02_Ca2+_P-type_ATPase		
S-layer domain	Family_02_Ca2+_P-type_ATPase		
FOG: HEAT repeat	Family_02_Ca2+_P-type_ATPase		
Probable Co/Zn/Cd efflux system membrane fusion protein	Family_02_Ca2+_P-type_ATPase		
Heavy metal RND efflux outer membrane protein, CzcC family	Family_02_Ca2+_P-type_ATPase		
GGDEF	Family_02_Ca2+_P-type_ATPase		
periplasmic mercuric ion binding protein	Family_02_Ca2+_P-type_ATPase		
Response regulator receiver domain protein (CheY) (EC 3.1.1.61)	Family_02_Ca2+_P-type_ATPase		
Adenosine deaminase (EC 3.5.4.4), alternative form	Family_02_Ca2+_P-type_ATPase		
Archaeal DNA polymerase II large subunit (EC 2.7.7.7) @ intein-containing	Family_02_Ca2+_P-type_ATPase		
UPF0146 protein MJ0688	Family_02_Ca2+_P-type_ATPase		
COG4123: Predicted O-methyltransferase	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Chaperone protein DnaJ	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Chaperone protein DnaK	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
DNA polymerase III delta prime subunit (EC 2.7.7.7)	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
FIG001341: Probable Fe(2+)-trafficking protein YggX	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Glutathione synthetase (EC 6.3.2.3)	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Heat shock protein GrpE	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
RNA polymerase sigma factor RpoH	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Ribonuclease PH (EC 2.7.7.56)	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Ribosomal protein L11 methyltransferase (EC 2.1.1.-)	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Translation elongation factor LepA	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
rRNA small subunit methyltransferase I	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
tmRNA-binding protein SmpB	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Twitching motility protein PilT	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
DNA replication intiation control protein YabA	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
FIG009886: phosphoesterase	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Heat-inducible transcription repressor HrcA	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
tRNA-t(6)A37 methylthiotransferase	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Signal peptidase-like protein	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Xanthosine/inosine triphosphate pyrophosphatase	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
HspR, transcriptional repressor of DnaK operon	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Membrane-associated protein containing RNA-binding TRAM domain and ribonuclease PIN-domain, YacL B.subtilis ortholog	Heat_shock_dnaK_gene_cluster_extended	Stress Response	Heat shock
Polymyxin synthetase PmxA	Polymyxin_Synthetase_Gene_Cluster_in_Bacillus	Virulence	Resistance to antibiotics and toxic compounds
Polymyxin synthetase PmxB	Polymyxin_Synthetase_Gene_Cluster_in_Bacillus	Virulence	Resistance to antibiotics and toxic compounds
Polymyxin transporter PmxC	Polymyxin_Synthetase_Gene_Cluster_in_Bacillus	Virulence	Resistance to antibiotics and toxic compounds
Uncharacterized protein in polymyxin biosynthetic cluster	Polymyxin_Synthetase_Gene_Cluster_in_Bacillus	Virulence	Resistance to antibiotics and toxic compounds
4'-phosphopantetheinyl transferase (EC 2.7.8.-) in polymyxin biosynthetic cluster	Polymyxin_Synthetase_Gene_Cluster_in_Bacillus	Virulence	Resistance to antibiotics and toxic compounds
Cell division protein FtsX	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
GldB	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Twitching motility protein PilT	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Two-component sensor PilS	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial assembly protein PilC	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial assembly, ATPase PilB	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial biogenesis protein FimT	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial biogenesis protein PilV	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial biogenesis protein PilW	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial biogenesis protein PilX	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial biogenesis protein PilY1	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV fimbrial biogenesis protein PilY2	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV pilin PilA	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Type IV pilus biogenesis protein PilE	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
gliding motility protein GldF	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
gliding motility protein GldG	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
twitching motility protein PilG	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
twitching motility protein PilH	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
twitching motility protein PilJ	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
type 4 fimbrial biogenesis protein FimU	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
type IV pili signal transduction protein PilI	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
type IV pilus biogenesis protein PilJ	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
PilS cassette	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Macrophage infectivity potentiator/GldI	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
GldJ	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Protein-glutamine gamma-glutamyltransferase (EC 2.3.2.13)	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Swarming motility protein SwrC	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Membrane-associated protein containing RNA-binding TRAM domain and ribonuclease PIN-domain, YacL B.subtilis ortholog	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
GldD	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
GldI	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
gliding motility protein MglA	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
pilin	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Gliding motility protein (GldA) related protein	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
PilQ	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
MglB	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
PilH	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
large PilS cassette	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
PilT	Bacterial_motility:Gliding	Motility and Chemotaxis	Social motility and nonflagellar swimming in bacteria
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	CoA_Biosynthesis_copy	Experimental Subsystems	
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	CoA_Biosynthesis_copy	Experimental Subsystems	
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	CoA_Biosynthesis_copy	Experimental Subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	CoA_Biosynthesis_copy	Experimental Subsystems	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	CoA_Biosynthesis_copy	Experimental Subsystems	
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	CoA_Biosynthesis_copy	Experimental Subsystems	
Ketol-acid reductoisomerase (EC 1.1.1.86)	CoA_Biosynthesis_copy	Experimental Subsystems	
Pantoate--beta-alanine ligase (EC 6.3.2.1)	CoA_Biosynthesis_copy	Experimental Subsystems	
Aspartate 1-decarboxylase (EC 4.1.1.11)	CoA_Biosynthesis_copy	Experimental Subsystems	
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	CoA_Biosynthesis_copy	Experimental Subsystems	
Rhodanese domain protein	CoA_Biosynthesis_copy	Experimental Subsystems	
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	CoA_Biosynthesis_copy	Experimental Subsystems	
Rhodanese-like domain protein	CoA_Biosynthesis_copy	Experimental Subsystems	
2-dehydropantoate 2-reductase (EC 1.1.1.169)	CoA_Biosynthesis_copy	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	CoA_Biosynthesis_copy	Experimental Subsystems	
Rhodanese-related sulfurtransferase	CoA_Biosynthesis_copy	Experimental Subsystems	
Uncharacterised protein family UPF0157 (COG2320)	CoA_Biosynthesis_copy	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	CoA_Biosynthesis_copy	Experimental Subsystems	
Pantoate kinase, archaeal (EC 2.7.1.-)	CoA_Biosynthesis_copy	Experimental Subsystems	
Phosphopantothenate synthetase, archaeal	CoA_Biosynthesis_copy	Experimental Subsystems	
Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1)	CoA_Biosynthesis_copy	Experimental Subsystems	
DUF2236	CoA_Biosynthesis_copy	Experimental Subsystems	
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	CoA_Biosynthesis_copy	Experimental Subsystems	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	At5g63290	Stress Response	Heat shock
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	At5g63290	Stress Response	Heat shock
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	At5g63290	Stress Response	Heat shock
Translation elongation factor LepA	At5g63290	Stress Response	Heat shock
Heat-inducible transcription repressor HrcA	At5g63290	Stress Response	Heat shock
Heat shock protein GrpE	At5g63290	Stress Response	Heat shock
Chaperone protein DnaJ	At5g63290	Stress Response	Heat shock
Chaperone protein DnaK	At5g63290	Stress Response	Heat shock
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	At5g63290	Stress Response	Heat shock
tmRNA-binding protein SmpB	At5g63290	Stress Response	Heat shock
rRNA small subunit methyltransferase I	At5g63290	Stress Response	Heat shock
DNA repair protein RadA	At5g63290	Stress Response	Heat shock
ATP-dependent Clp protease, ATP-binding subunit ClpC	At5g63290	Stress Response	Heat shock
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	At5g63290	Stress Response	Heat shock
tRNA-t(6)A37 methylthiotransferase	At5g63290	Stress Response	Heat shock
Ribosomal protein L11 methyltransferase (EC 2.1.1.-)	At5g63290	Stress Response	Heat shock
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	At5g63290	Stress Response	Heat shock
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	At5g63290	Stress Response	Heat shock
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	At5g63290	Stress Response	Heat shock
Twitching motility protein PilT	At5g63290	Stress Response	Heat shock
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	At5g63290	Stress Response	Heat shock
Ribonuclease PH (EC 2.7.7.56)	At5g63290	Stress Response	Heat shock
FIG001341: Probable Fe(2+)-trafficking protein YggX	At5g63290	Stress Response	Heat shock
Glutathione synthetase (EC 6.3.2.3)	At5g63290	Stress Response	Heat shock
FIG009886: phosphoesterase	At5g63290	Stress Response	Heat shock
Membrane-associated protein containing RNA-binding TRAM domain and ribonuclease PIN-domain, YacL B.subtilis ortholog	At5g63290	Stress Response	Heat shock
DNA integrity scanning protein DisA	At5g63290	Stress Response	Heat shock
HspR, transcriptional repressor of DnaK operon	At5g63290	Stress Response	Heat shock
Xanthosine/inosine triphosphate pyrophosphatase	At5g63290	Stress Response	Heat shock
Essential ribosome assembly factor Nob1, processing pre-18S ribosomal RNA	At5g63290	Stress Response	Heat shock
ribonuclease PIN-domain	At5g63290	Stress Response	Heat shock
ribonuclease PIN_Nob1 domain	At5g63290	Stress Response	Heat shock
Cytochrome b559 alpha chain (PsbE)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Cytochrome b559 beta chain (PsbF)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II 10 kDa phosphoprotein (PsbH)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II 12 kDa extrinsic protein (PsbU)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II 13 kDa protein Psb28 (similar to PsbW)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II CP43 protein (PsbC)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II CP47 protein (PsbB)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II manganese-stabilizing protein (PsbO)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II oxygen evolving complex protein PsbP	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein Psb27	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbI	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbJ	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbK	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbL	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbM	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbN	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbTc	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbV, cytochrome c550	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbX	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbY	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbZ	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II stability/assembly factor HCF136/Ycf48	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Putative chaperon-like protein Ycf39 for quinone binding in Photosystem II	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
photosystem II protein D1 (PsbA)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
photosystem II protein D2 (PsbD)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Chlorophyll a(b) binding protein, photosystem II CP43 protein (PsbC) homolog	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbW (similar to Psb28)	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II oxygen evolving complex protein PsbQ	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II protein PsbTn	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
High chlorophyll fluorescence factor 244 (HCF244), required for translational initiation of psbA mRNA	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
High chlorophyll fluorescence factor 173 (HCF173), required for translational initiation of psbA mRNA	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II 10 kDa protein PsbR	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
Photosystem II CP22 protein PsbS	Photosystem_II	Photosynthesis	Electron transport and photophosphorylation
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) in D-glucosaminate utilization operon	D-glucosaminate_utilization	Carbohydrates	Aminosugars
D-Glucosaminate-6-phosphate ammonia-lyase (EC 4.3.1.-)	D-glucosaminate_utilization	Carbohydrates	Aminosugars
Metallo-dependent hydrolases, subgroup B	D-glucosaminate_utilization	Carbohydrates	Aminosugars
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	rlmN	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	rlmN	Experimental Subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	rlmN	Experimental Subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	rlmN	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	rlmN	Experimental Subsystems	
Shikimate kinase I (EC 2.7.1.71)	rlmN	Experimental Subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	rlmN	Experimental Subsystems	
Adenylate kinase (EC 2.7.4.3)	rlmN	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	rlmN	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	rlmN	Experimental Subsystems	
Novel pyridoxal kinase, thiD family (EC 2.7.1.35)	rlmN	Experimental Subsystems	
Acetone carboxylase, beta subunit (EC 6.4.1.6)	Acetone_carboxylase_subunits_2	Carbohydrates	Aceton metabolism
Acetone carboxylase, alpha subunit (EC 6.4.1.6)	Acetone_carboxylase_subunits_2	Carbohydrates	Aceton metabolism
Acetone carboxylase, gamma subunit (EC 6.4.1.6)	Acetone_carboxylase_subunits_2	Carbohydrates	Aceton metabolism
periplasmic decaheme cytochrome c, MtrA	Respiratory_Systems_-_Shewanella		
surface localized decaheme cytochrome c lipoprotein, MtrC	Respiratory_Systems_-_Shewanella		
surface localized decaheme cytochrome c lipoprotein, OmcA	Respiratory_Systems_-_Shewanella		
surface localized undecaheme cytochrome c lipoprotein, UndB	Respiratory_Systems_-_Shewanella		
surface localized decaheme cytochrome c lipoprotein, MtrH	Respiratory_Systems_-_Shewanella		
surface localized decaheme cytochrome c lipoprotein, MtrF	Respiratory_Systems_-_Shewanella		
outer membrane protein, MtrE	Respiratory_Systems_-_Shewanella		
periplasmic decaheme cytochrome c, MtrD	Respiratory_Systems_-_Shewanella		
membrane anchored tetraheme cytochrome c, CymA	Respiratory_Systems_-_Shewanella		
Fumarate reductase tetraheme cytochrome-c, FccA	Respiratory_Systems_-_Shewanella		
dimethyl sulfoxide reductase subunit, DmsA	Respiratory_Systems_-_Shewanella		
dimethyl sulfoxide reductase subunit, DmsB	Respiratory_Systems_-_Shewanella		
periplasmic c-type cytochrome, DmsE	Respiratory_Systems_-_Shewanella		
outer membrane protein, DmsF	Respiratory_Systems_-_Shewanella		
trimethylamine N-oxide terminal reductase, TorA	Respiratory_Systems_-_Shewanella		
inner membrane pentaheme c-type cytochrome, TorC	Respiratory_Systems_-_Shewanella		
TorA-specific chaperone protein, TorD	Respiratory_Systems_-_Shewanella		
periplasmic nitrate reductase, NapA	Respiratory_Systems_-_Shewanella		
periplasmic diheme c-type cytochrome, NapB	Respiratory_Systems_-_Shewanella		
cytoplasmic maturation chaperone protein for NapA, NapD	Respiratory_Systems_-_Shewanella		
inner membrane tetra-heme c-type cytochrome, NapC	Respiratory_Systems_-_Shewanella		
periplasmic non-heme iron-sulphur protein, NapG	Respiratory_Systems_-_Shewanella		
inner-membrane non-heme iron-sulphur protein, NapH	Respiratory_Systems_-_Shewanella		
cytoplasmic non-heme iron-sulphur protein, NapF	Respiratory_Systems_-_Shewanella		
NrfD protein	Respiratory_Systems_-_Shewanella		
surface localized undecaheme cytochrome c lipoprotein, UndA	Respiratory_Systems_-_Shewanella		
surface localized decaheme cytochrome c lipoprotein, MtrG	Respiratory_Systems_-_Shewanella		
periplasmic pentaheme electron-transfer protein, NrfB	Respiratory_Systems_-_Shewanella		
UDP-GlcNAc-inverting 4,6-dehydratase (EC 4.2.1.115)	CMP-pseudaminic_acid_pathway_in_Helicobacter_pylori	Virulence, Disease and Defense	Adhesion
UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase (EC 2.6.1.92)	CMP-pseudaminic_acid_pathway_in_Helicobacter_pylori	Virulence, Disease and Defense	Adhesion
UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase (EC 2.3.1.202)	CMP-pseudaminic_acid_pathway_in_Helicobacter_pylori	Virulence, Disease and Defense	Adhesion
UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase (EC 3.6.1.57)	CMP-pseudaminic_acid_pathway_in_Helicobacter_pylori	Virulence, Disease and Defense	Adhesion
Pseudaminic acid cytidylyltransferase (EC 2.7.7.81)	CMP-pseudaminic_acid_pathway_in_Helicobacter_pylori	Virulence, Disease and Defense	Adhesion
Pseudaminic acid synthase (EC 2.5.1.97)	CMP-pseudaminic_acid_pathway_in_Helicobacter_pylori	Virulence, Disease and Defense	Adhesion
4-alpha-L-fucosyltransferase (EC 2.4.1.-)	TDP_etc	Experimental Subsystems	
RhlB, TDP-rhamnosyltransferase 1 (EC 2.4.1.-)	TDP_etc	Experimental Subsystems	
RhlC, TDP-rhamnosyltransferase 2 (EC 2.4.1.-)	TDP_etc	Experimental Subsystems	
Lipopolysaccharide biosynthesis protein RffA	TDP_etc	Experimental Subsystems	
TDP-4-oxo-6-deoxy-D-glucose transaminase	TDP_etc	Experimental Subsystems	
putative TDP-D-fucosamine acetyltransferase	TDP_etc	Experimental Subsystems	
TDP-4-keto-6-deoxyhexose 4-ketoreductase	TDP_etc	Experimental Subsystems	
TDP-glucose-4,6-dehydratase-related protein	TDP_etc	Experimental Subsystems	
dTDP-4-dehydro-6-deoxy-D-glucose 4-aminotransferase( EC:2.6.1.33 )	TDP_etc	Experimental Subsystems	
TDP-4-keto-6-deoxy-D-glucose transaminase	TDP_etc	Experimental Subsystems	
Putative TDP-glucose dehydratase	TDP_etc	Experimental Subsystems	
Sarcosine oxidase alpha subunit (EC 1.5.3.1)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
Sarcosine oxidase beta subunit (EC 1.5.3.1)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
Sarcosine oxidase delta subunit (EC 1.5.3.1)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
Sarcosine oxidase gamma subunit (EC 1.5.3.1)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
L-serine dehydratase (EC 4.3.1.17)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
N-methyl-L-amino-acid oxidase (EC 1.5.3.2)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
N-methyl-L-tryptophan oxidase (EC 1.5.3.-)	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
Monomeric sarcosine oxidase (EC:1.5.3.1), curated	Sarcosine_oxidases,_monomeric_and_heterotetrameric	Amino Acids and Derivatives	Alanine, serine, and glycine
COG0613, Predicted metal-dependent phosphoesterases (PHP family)	YrdC-YciO	RNA Metabolism	RNA processing and modification
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	YrdC-YciO	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YrdC-YciO	RNA Metabolism	RNA processing and modification
Hypothetical YciO protein, TsaC/YrdC paralog	YrdC-YciO	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	YrdC-YciO	RNA Metabolism	RNA processing and modification
Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase	YrdC-YciO	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	YrdC-YciO	RNA Metabolism	RNA processing and modification
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit	YrdC-YciO	RNA Metabolism	RNA processing and modification
Hypothetical protein ywlG	LMPTP_YwlE_cluster	Clustering-based subsystems	
Hypothetical transmembrane protein ywlD	LMPTP_YwlE_cluster	Clustering-based subsystems	
Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	LMPTP_YwlE_cluster	Clustering-based subsystems	
Peptide chain release factor 1	LMPTP_YwlE_cluster	Clustering-based subsystems	
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	LMPTP_YwlE_cluster	Clustering-based subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	LMPTP_YwlE_cluster	Clustering-based subsystems	
Uracil phosphoribosyltransferase (EC 2.4.2.9)	LMPTP_YwlE_cluster	Clustering-based subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	LMPTP_YwlE_cluster	Clustering-based subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	Threonylcarbamoyladenosine	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	Threonylcarbamoyladenosine	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Threonylcarbamoyladenosine	RNA Metabolism	RNA processing and modification
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Threonylcarbamoyladenosine	RNA Metabolism	RNA processing and modification
COG1720: Uncharacterized conserved protein	Threonylcarbamoyladenosine	RNA Metabolism	RNA processing and modification
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
COG1720: Uncharacterized conserved protein	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
GTP-binding protein Era	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Iron-sulfur cluster assembly scaffold protein IscU	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Predicted P-loop ATPase fused to an acetyltransferase COG1444	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Thiamine biosynthesis protein thiI	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase A (EC 4.2.1.70)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA-i(6)A37 methylthiotransferase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA:Cm32/Um32 methyltransferase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Archease	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
COG1355, Predicted dioxygenase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
COG2078: Uncharacterized ACR	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Hypothetical ATP-binding protein, containing DUF265 domain	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Methylthioadenosine deaminase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Predicted methyltransferase, DUF43 family	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Protein RtcB	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA dihydrouridine synthase B (EC 1.-.-.-)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA(U54)-2-thioribothymidine synthetase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Alanyl-tRNA synthetase domain protein	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Rhodanese-like domain protein	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
archaeal ATPase, fused to C-terminal DUF234 domain	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA (adenine57/58-N1)-methyltransferase (EC 2.1.1.36)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Predicted N6-adenine-specific RNA methylase containing THUMP domain	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
TtuB	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA and rRNA cytosine-C5-methylase Type 1	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA/RNA cytosine-C5-methylase (EC 2.1.1.-)	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
COG3269, Predicted RNA-binding protein, contains TRAM domain	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
PUA-PAPS reductase like fusion	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA m5C48-49 methylase	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
TilS-like 3	tRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
COG1720: Uncharacterized conserved protein	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
GTP-binding protein Era	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Iron-sulfur cluster assembly scaffold protein IscU	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Predicted P-loop ATPase fused to an acetyltransferase COG1444	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Thiamine biosynthesis protein thiI	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase A (EC 4.2.1.70)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA-i(6)A37 methylthiotransferase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA:Cm32/Um32 methyltransferase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Archease	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
COG1355, Predicted dioxygenase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
COG2078: Uncharacterized ACR	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Hypothetical ATP-binding protein, containing DUF265 domain	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Methylthioadenosine deaminase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Predicted methyltransferase, DUF43 family	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Protein RtcB	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA dihydrouridine synthase B (EC 1.-.-.-)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA(U54)-2-thioribothymidine synthetase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Alanyl-tRNA synthetase domain protein	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Rhodanese-like domain protein	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
archaeal ATPase, fused to C-terminal DUF234 domain	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA (adenine57/58-N1)-methyltransferase (EC 2.1.1.36)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
Predicted N6-adenine-specific RNA methylase containing THUMP domain	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
TtuB	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA and rRNA cytosine-C5-methylase Type 1	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA/RNA cytosine-C5-methylase (EC 2.1.1.-)	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
COG3269, Predicted RNA-binding protein, contains TRAM domain	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
PUA-PAPS reductase like fusion	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
tRNA m5C48-49 methylase	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
TilS-like 3	tRNA_mods_Archaea	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	tsaC_cluster	Experimental Subsystems	
Hypothetical YciO protein, TsaC/YrdC paralog	tsaC_cluster	Experimental Subsystems	
Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	tsaC_cluster	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	tsaC_cluster	Experimental Subsystems	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	tsaC_cluster	Experimental Subsystems	
Peptide chain release factor 1	tsaC_cluster	Experimental Subsystems	
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	tsaC_cluster	Experimental Subsystems	
Uracil phosphoribosyltransferase (EC 2.4.2.9)	tsaC_cluster	Experimental Subsystems	
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	tsaC_cluster	Experimental Subsystems	
Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA	tsaC_cluster	Experimental Subsystems	
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	tsaC_cluster	Experimental Subsystems	
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	tsaC_cluster	Experimental Subsystems	
Transcriptional regulatory protein RstA	tsaC_cluster	Experimental Subsystems	
D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2)	tsaC_cluster	Experimental Subsystems	
Chloride channel protein	tsaC_cluster	Experimental Subsystems	
Hypothetical protein ywlG	tsaC_cluster	Experimental Subsystems	
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)	tsaC_cluster	Experimental Subsystems	
Sua5/YciO/YrdC/YwlC family protein	tsaC_cluster	Experimental Subsystems	
UDP-N-acetylmuramyl pentapeptide phosphotransferase	tsaC_cluster	Experimental Subsystems	
protein of unknown function DUF204	tsaC_cluster	Experimental Subsystems	
Hypothetical transmembrane protein ywlD	tsaC_cluster	Experimental Subsystems	
FIG01280469: hypothetical protein	tsaC_cluster	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	FolK_pantothenate	Experimental Subsystems	
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	FolK_pantothenate	Experimental Subsystems	
Pantoate--beta-alanine ligase (EC 6.3.2.1)	FolK_pantothenate	Experimental Subsystems	
Poly(A) polymerase (EC 2.7.7.19)	FolK_pantothenate	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	FolK_pantothenate	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	FolK_pantothenate	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	FolK_pantothenate	Experimental Subsystems	
Thymidylate synthase (EC 2.1.1.45)	FolK_pantothenate	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	FolK_pantothenate	Experimental Subsystems	
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	FolK_pantothenate	Experimental Subsystems	
Aspartate 1-decarboxylase (EC 4.1.1.11)	FolK_pantothenate	Experimental Subsystems	
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	FolK_pantothenate	Experimental Subsystems	
Thymidylate synthase thyX (EC 2.1.1.-)	FolK_pantothenate	Experimental Subsystems	
short-chain dehydrogenase/reductase SDR	FolK_pantothenate	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	FolK_pantothenate	Experimental Subsystems	
tRNA:m(5)U-54 MTase gid	FolK_pantothenate	Experimental Subsystems	
Methylenetetrahydrofolate-tRNA-(uracil-5-)- methyltransferase trmFO	FolK_pantothenate	Experimental Subsystems	
FIG149030: hypothetical protein	CBSS-498211.3.peg.1514	Clustering-based subsystems	
FIG007317: Chromosome segregation protein SMC-like	CBSS-498211.3.peg.1514	Clustering-based subsystems	
FIG039767: hypothetical protein	CBSS-498211.3.peg.1514	Clustering-based subsystems	
FIG005429: hypothetical protein	CBSS-498211.3.peg.1514	Clustering-based subsystems	
Phytoene synthase (EC 2.5.1.32)	(Bacterio)rhodopsin	Experimental Subsystems	
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)	(Bacterio)rhodopsin	Experimental Subsystems	
Proteorhodopsin	(Bacterio)rhodopsin	Experimental Subsystems	
15,15'-beta-carotene dioxygenase	(Bacterio)rhodopsin	Experimental Subsystems	
bacteriorhodopsin	(Bacterio)rhodopsin	Experimental Subsystems	
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	PLP_orphan	Experimental Subsystems	
Arginine racemase (EC 5.1.1.9) @ Lysine racemase (EC 5.1.1.5) @ Ornithine racemase (EC 5.1.1.12)	PLP_orphan	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	PLP_orphan	Experimental Subsystems	
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	PLP_orphan	Experimental Subsystems	
Aspartate racemase (EC 5.1.1.13)	PLP_orphan	Experimental Subsystems	
D-amino-acid oxidase (EC 1.4.3.3)	PLP_orphan	Experimental Subsystems	
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	PLP_orphan	Experimental Subsystems	
5-aminolevulinate synthase (EC 2.3.1.37)	PLP_orphan	Experimental Subsystems	
5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	PLP_orphan	Experimental Subsystems	
Taurine--pyruvate aminotransferase (EC 2.6.1.77)	PLP_orphan	Experimental Subsystems	
Alpha-aminoadipate aminotransferase (EC 2.6.1.39)	PLP_orphan	Experimental Subsystems	
dTDP-4-dehydro-6-deoxy-D-glucose 4-aminotransferase( EC:2.6.1.33 )	PLP_orphan	Experimental Subsystems	
Homocysteine desulfhydrase (EC 4.4.1.2)	PLP_orphan	Experimental Subsystems	
Mycobacteriophage GP2 protein	Dp1_Q	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	Dp1_Q	Experimental Subsystems	
6-carboxytetrahydropterin synthase (EC 4.1.2.50)	Dp1_Q	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	Dp1_Q	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	Dp1_Q	Experimental Subsystems	
ParB-like Mycobacterium phage GP1 protein	Dp1_Q	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	COG3236-small-temp	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	COG3236-small-temp	Experimental Subsystems	
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	COG3236-small-temp	Experimental Subsystems	
Uncharacterized protein COG3236	COG3236-small-temp	Experimental Subsystems	
RNA:NAD 2'-phosphotransferase	COG3236-small-temp	Experimental Subsystems	
ADP-ribosylglycohydrolase	COG3236-small-temp	Experimental Subsystems	
COG4529	COG4529	Experimental Subsystems	
D-lactate dehydrogenase (EC 1.1.1.28)	COG4529	Experimental Subsystems	
Methylglyoxal synthase (EC 4.2.3.3)	COG4529	Experimental Subsystems	
L-lactate dehydrogenase (EC 1.1.2.3)	COG4529	Experimental Subsystems	
Zn-dependent hydrolase, glyoxylase II family	COG4529	Experimental Subsystems	
Aspartyl-tRNA synthetase (EC 6.1.1.12)	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Histidyl-tRNA synthetase (EC 6.1.1.21)	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
tRNA-specific 2-thiouridylase MnmA	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Iron-sulfur cluster assembly protein SufB	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
tRNA-Met-CAT	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Cysteine desulfurase (EC 2.8.1.7)	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
6S RNA (Pichon, Felden, 2005)	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
tRNA-Leu-AAG	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Uncharacterized ATPase (AAA family) associated with cysteine desulfurase	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Iron-sulfur cluster regulator IscR	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
NifU-like domain protein	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-)	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase( EC:2.1.1.61 )	At5g37530_(CsdL_protein_family)	Sulfur Metabolism	Organic sulfur assimilation
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Rhodanese-like domain required for thiamine synthesis	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster assembly scaffold protein IscU	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron binding protein IscA for iron-sulfur cluster assembly	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Chaperone protein HscA	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Chaperone protein HscB	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster regulator IscR	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Ferredoxin, 2Fe-2S	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
probable iron binding protein from the HesB_IscA_SufA family	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Cysteine desulfurase (EC 2.8.1.7)	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
PaaD-like protein (DUF59) involved in Fe-S cluster assembly	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster assembly protein SufB	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster assembly ATPase protein SufC	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster assembly protein SufD	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster assembly scaffold protein IscU/NifU-like	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster assembly scaffold protein NifU	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
probable iron binding protein from the HesB_IscA_SufA family in Nif operon	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
NifZ protein	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
NifM protein	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
NifU-like domain protein	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Sulfur acceptor protein SufE for iron-sulfur cluster assembly	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster assembly scaffold protein IscU/NifU-like for SUF system, SufE3	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron binding protein SufA for iron-sulfur cluster assembly	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
NifU-like protein	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
Iron-sulfur cluster regulator SufR	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
probable iron binding protein for iron-sulfur cluster assembly	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
NifU-like protein 1, chloroplast precursor (AtCNfu1, AtCnfU-IVb)	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
NifU-like protein 2, chloroplast precursor (AtCNfu2, AtCnfU-V)	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
NifU-like protein 3 chloroplast precursor (AtCNfu3, AtCnfU-IVa)	Fe-S_cluster_assembly	Cofactors, Vitamins, Prosthetic Groups, Pigments	Fe-S clusters
DinG family ATP-dependent helicase YoaA	At1g48360	Miscellaneous	Plant-Prokaryote comparative genomics
DinG family ATP-dependent helicase YpvA	At1g48360	Miscellaneous	Plant-Prokaryote comparative genomics
DinG family ATP-dependent helicase CPE1197	At1g48360	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein, restriction endonuclease-like VRR-NUC domain	At1g48360	Miscellaneous	Plant-Prokaryote comparative genomics
ATP-dependent helicase DinG/Rad3	At1g48360	Miscellaneous	Plant-Prokaryote comparative genomics
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
Sulfur carrier protein ThiS	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
photosystem I assembly related protein Ycf4	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
Cytochrome b6-f complex subunit, apocytochrome f	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical glycine rich membrane protein DUF1517	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
Membrane protein PxcA, involved in light-induced proton extrusion	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical cyanobacterial membrane protein, in cluster with PxcA	At1g54520	Miscellaneous	Plant-Prokaryote comparative genomics
Lipoate-protein ligase A	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Cardiolipin synthetase (EC 2.7.8.-)	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
NAD-dependent protein deacetylase of SIR2 family	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Beta-lactamase class C and other penicillin binding proteins	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase, LipM	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Protein:protein lipoyl transferase	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
DUF124 domain-containing protein	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
COG2110, Macro domain, possibly ADP-ribose binding module	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Uncharacterized monothiol glutaredoxin ycf64-like	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein YmdC, PLD phosphodiesterase domains	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Hydrolase of the alpha/beta superfamily in cluster with COG2110	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Putative lipoprotein in cluster with COG2110	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Luciferase-like monooxygenase (EC 1.14.-.-) in cluster with COG2110	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Probable NADH-dependent flavin oxidoreductase in cluster with COG2110	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Biotinyl-lipoyl attachment domain protein, GcvH-like	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
Sec14p-like lipid-binding domain	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
DNA/RNA-binding protein Alba	At1g69340_At2g40600	Miscellaneous	Plant-Prokaryote comparative genomics
FIG003620: Proteophosphoglycan precursor (Fragment)	At2g33980_At1g28960	Miscellaneous	Plant-Prokaryote comparative genomics
FIG017823: ATPase, MoxR family	At2g33980_At1g28960	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical nudix hydrolase YeaB	At2g33980_At1g28960	Miscellaneous	Plant-Prokaryote comparative genomics
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	At2g33980_At1g28960	Miscellaneous	Plant-Prokaryote comparative genomics
Coenzyme A pyrophosphatase (EC 3.6.1.-)	At2g33980_At1g28960	Miscellaneous	Plant-Prokaryote comparative genomics
Putative thylakoid membrane protein, contains 8 pentapeptide repeats, sll0274 homolog	At2g44920_At1g12250	Miscellaneous	Plant-Prokaryote comparative genomics
Putative lumenal protein, contains 8 pentapeptide repeats, sll0577 homolog	At2g44920_At1g12250	Miscellaneous	Plant-Prokaryote comparative genomics
Putative lumenal protein, contains 8 pentapeptide repeats, sll0301 homolog	At2g44920_At1g12250	Miscellaneous	Plant-Prokaryote comparative genomics
Large exoproteins involved in heme utilization or adhesion	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Thiol peroxidase, Bcp-type (EC 1.11.1.15)	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
probable iron binding protein from the HesB_IscA_SufA family	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
FIG110192: hypothetical protein	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Amidophosphoribosyltransferase (EC 2.4.2.14)	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Colicin V production protein	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12)	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Bacterioferritin	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
COG2833: uncharacterized protein	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Peptidase, M23/M37 family	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Acyl-CoA thioesterase II (EC 3.1.2.-)	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Disulfide bond chaperones of the HSP33 family	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily	At5g04520_AT1G06240	Miscellaneous	Plant-Prokaryote comparative genomics
Histidine triad (HIT) nucleotide-binding protein, similarity with At5g48545 and yeast YDL125C (HNT1)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
ABC transporter, ATP-binding protein EcsA	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
ABC transporter, permease protein EscB	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
EcsC protein	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein SAV1839	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Foldase protein PrsA precursor (EC 5.2.1.8)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Protease production regulatory protein Hpr (ScoC)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein in cluster with Ecs transporter (in Streptococci)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Integration host factor alpha subunit	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein in cluster with Ecs transporter (in Lactococci)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Histidine triad nucleotide-binding protein 1 (HINT1)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Histidine triad (HIT) nucleotide-binding protein, yeast YDL125C (HNT1) homolog	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
Histidine triad nucleotide-binding protein 2 (HINT2)	At5g48545_and_At3g56490_At1g31160	Miscellaneous	Plant-Prokaryote comparative genomics
FIG007959: peptidase, M16 family	CBSS-350688.3.peg.1509	Clustering-based subsystems	
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	CBSS-350688.3.peg.1509	Clustering-based subsystems	
SSU ribosomal protein S15p (S13e)	CBSS-350688.3.peg.1509	Clustering-based subsystems	
FMN adenylyltransferase (EC 2.7.7.2)	CBSS-350688.3.peg.1509	Clustering-based subsystems	
Riboflavin kinase (EC 2.7.1.26)	CBSS-350688.3.peg.1509	Clustering-based subsystems	
tRNA pseudouridine synthase B (EC 4.2.1.70)	CBSS-350688.3.peg.1509	Clustering-based subsystems	
Ribosome-binding factor A	CBSS-350688.3.peg.1509	Clustering-based subsystems	
Translation initiation factor 2	CBSS-350688.3.peg.1509	Clustering-based subsystems	
ribosomal protein L7Ae family protein	CBSS-350688.3.peg.1509	Clustering-based subsystems	
COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination	CBSS-350688.3.peg.1509	Clustering-based subsystems	
Transcription termination protein NusA	CBSS-350688.3.peg.1509	Clustering-based subsystems	
DNA polymerase III alpha subunit (EC 2.7.7.7)	CBSS-350688.3.peg.1509	Clustering-based subsystems	
YlxP-like protein	CBSS-350688.3.peg.1509	Clustering-based subsystems	
FIG000325: clustered with transcription termination protein NusA	CBSS-350688.3.peg.1509	Clustering-based subsystems	
FIG007013: polysaccharide deacetylase, putative	CBSS-350688.3.peg.1509	Clustering-based subsystems	
Dipicolinate synthase subunit A (EC 4.2.1.52)	CBSS-350688.3.peg.1509	Clustering-based subsystems	
FIG007697: hypothetical protein	CBSS-350688.3.peg.1509	Clustering-based subsystems	
FIG000325: clustered with transcription termination protein NusA	NusA-TFII_Cluster	Clustering-based subsystems	
Transcription termination protein NusA	NusA-TFII_Cluster	Clustering-based subsystems	
COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination	NusA-TFII_Cluster	Clustering-based subsystems	
ribosomal protein L7Ae family protein	NusA-TFII_Cluster	Clustering-based subsystems	
Translation initiation factor 2	NusA-TFII_Cluster	Clustering-based subsystems	
Ribosome-binding factor A	NusA-TFII_Cluster	Clustering-based subsystems	
YlxP-like protein	NusA-TFII_Cluster	Clustering-based subsystems	
Transcription termination factor Rho	Transcription_factors_bacterial	RNA Metabolism	Transcription
FIG000325: clustered with transcription termination protein NusA	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription termination protein NusA	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription termination protein NusB	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription antitermination protein NusG	Transcription_factors_bacterial	RNA Metabolism	Transcription
ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription elongation factor GreA	Transcription_factors_bacterial	RNA Metabolism	Transcription
COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination	Transcription_factors_bacterial	RNA Metabolism	Transcription
ribosomal protein L7Ae family protein	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription-repair coupling factor	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription elongation factor GreB	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription antitermination protein UpdY	Transcription_factors_bacterial	RNA Metabolism	Transcription
Regulator of nucleoside diphosphate kinase	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcriptional activator RfaH	Transcription_factors_bacterial	RNA Metabolism	Transcription
Anti-cleavage anti-GreA transcription factor Gfh1	Transcription_factors_bacterial	RNA Metabolism	Transcription
Rho-specific inhibitor of transcription termination (YaeO)	Transcription_factors_bacterial	RNA Metabolism	Transcription
Transcription elongation factor GreB-related protein	Transcription_factors_bacterial	RNA Metabolism	Transcription
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	271-Bsub	Experimental Subsystems	
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	271-Bsub	Experimental Subsystems	
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	271-Bsub	Experimental Subsystems	
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	271-Bsub	Experimental Subsystems	
Acyl carrier protein	271-Bsub	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	271-Bsub	Experimental Subsystems	
Adenylate kinase (EC 2.7.4.3)	271-Bsub	Experimental Subsystems	
Alanyl-tRNA synthetase (EC 6.1.1.7)	271-Bsub	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	271-Bsub	Experimental Subsystems	
Arginyl-tRNA synthetase (EC 6.1.1.19)	271-Bsub	Experimental Subsystems	
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	271-Bsub	Experimental Subsystems	
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	271-Bsub	Experimental Subsystems	
Aspartyl-tRNA synthetase (EC 6.1.1.12)	271-Bsub	Experimental Subsystems	
Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	271-Bsub	Experimental Subsystems	
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	271-Bsub	Experimental Subsystems	
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	271-Bsub	Experimental Subsystems	
Cytidylate kinase (EC 2.7.4.25)	271-Bsub	Experimental Subsystems	
23S rRNA methyltransferase (EC 2.1.1.-)	271-Bsub	Experimental Subsystems	
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	271-Bsub	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	271-Bsub	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	271-Bsub	Experimental Subsystems	
Diaminopimelate epimerase (EC 5.1.1.7)	271-Bsub	Experimental Subsystems	
D-alanine--D-alanine ligase (EC 6.3.2.4)	271-Bsub	Experimental Subsystems	
Cell division protein FtsQ	271-Bsub	Experimental Subsystems	
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	271-Bsub	Experimental Subsystems	
Chromosomal replication initiator protein DnaA	271-Bsub	Experimental Subsystems	
Helicase loader DnaB	271-Bsub	Experimental Subsystems	
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]	271-Bsub	Experimental Subsystems	
DNA replication protein dnaD	271-Bsub	Experimental Subsystems	
DNA primase (EC 2.7.7.-)	271-Bsub	Experimental Subsystems	
Helicase loader DnaI	271-Bsub	Experimental Subsystems	
DNA polymerase III beta subunit (EC 2.7.7.7)	271-Bsub	Experimental Subsystems	
DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	271-Bsub	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	271-Bsub	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	271-Bsub	Experimental Subsystems	
Enolase (EC 4.2.1.11)	271-Bsub	Experimental Subsystems	
GTP-binding protein Era	271-Bsub	Experimental Subsystems	
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	271-Bsub	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	271-Bsub	Experimental Subsystems	
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	271-Bsub	Experimental Subsystems	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	271-Bsub	Experimental Subsystems	
Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	271-Bsub	Experimental Subsystems	
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	271-Bsub	Experimental Subsystems	
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	271-Bsub	Experimental Subsystems	
Ribosome recycling factor	271-Bsub	Experimental Subsystems	
Cell division protein FtsA	271-Bsub	Experimental Subsystems	
Cell division protein FtsL	271-Bsub	Experimental Subsystems	
Cell division protein ftsW	271-Bsub	Experimental Subsystems	
Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	271-Bsub	Experimental Subsystems	
Cell division protein ftsZ	271-Bsub	Experimental Subsystems	
Translation elongation factor G	271-Bsub	Experimental Subsystems	
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.-); Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)	271-Bsub	Experimental Subsystems	
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.-); Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.-)	271-Bsub	Experimental Subsystems	
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.-); Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.-)	271-Bsub	Experimental Subsystems	
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	271-Bsub	Experimental Subsystems	
O-sialoglycoprotein endopeptidase (EC 3.4.24.57)	271-Bsub	Experimental Subsystems	
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	271-Bsub	Experimental Subsystems	
Glutamyl-tRNA synthetase (EC 6.1.1.17)	271-Bsub	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	271-Bsub	Experimental Subsystems	
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	271-Bsub	Experimental Subsystems	
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	271-Bsub	Experimental Subsystems	
Guanylate kinase (EC 2.7.4.8)	271-Bsub	Experimental Subsystems	
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	271-Bsub	Experimental Subsystems	
Heat shock protein 60 family chaperone GroEL	271-Bsub	Experimental Subsystems	
Heat shock protein 60 family co-chaperone GroES	271-Bsub	Experimental Subsystems	
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	271-Bsub	Experimental Subsystems	
DNA gyrase subunit A (EC 5.99.1.3)	271-Bsub	Experimental Subsystems	
DNA gyrase subunit B (EC 5.99.1.3)	271-Bsub	Experimental Subsystems	
DNA-binding protein HU-alpha	271-Bsub	Experimental Subsystems	
Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	271-Bsub	Experimental Subsystems	
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	271-Bsub	Experimental Subsystems	
Histidyl-tRNA synthetase (EC 6.1.1.21)	271-Bsub	Experimental Subsystems	
DNA polymerase III delta prime subunit (EC 2.7.7.7)	271-Bsub	Experimental Subsystems	
Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	271-Bsub	Experimental Subsystems	
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	271-Bsub	Experimental Subsystems	
Translation initiation factor 1	271-Bsub	Experimental Subsystems	
Translation initiation factor 2	271-Bsub	Experimental Subsystems	
Translation initiation factor 3	271-Bsub	Experimental Subsystems	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	271-Bsub	Experimental Subsystems	
Leucyl-tRNA synthetase (EC 6.1.1.4)	271-Bsub	Experimental Subsystems	
DNA ligase (EC 6.5.1.2)	271-Bsub	Experimental Subsystems	
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	271-Bsub	Experimental Subsystems	
Methionine aminopeptidase (EC 3.4.11.18)	271-Bsub	Experimental Subsystems	
1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)	271-Bsub	Experimental Subsystems	
Naphthoate synthase (EC 4.1.3.36)	271-Bsub	Experimental Subsystems	
O-succinylbenzoate synthase (EC 4.2.1.113)	271-Bsub	Experimental Subsystems	
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 2.2.1.9)	271-Bsub	Experimental Subsystems	
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	271-Bsub	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	271-Bsub	Experimental Subsystems	
S-adenosylmethionine synthetase (EC 2.5.1.6)	271-Bsub	Experimental Subsystems	
Methionyl-tRNA synthetase (EC 6.1.1.10)	271-Bsub	Experimental Subsystems	
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	271-Bsub	Experimental Subsystems	
Rod shape-determining protein MreB	271-Bsub	Experimental Subsystems	
Rod shape-determining protein MreC	271-Bsub	Experimental Subsystems	
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.2)	271-Bsub	Experimental Subsystems	
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.2)	271-Bsub	Experimental Subsystems	
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.2)	271-Bsub	Experimental Subsystems	
Na(+) H(+) antiporter subunit D (TC 2.A.63.1.2)	271-Bsub	Experimental Subsystems	
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.2)	271-Bsub	Experimental Subsystems	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	271-Bsub	Experimental Subsystems	
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	271-Bsub	Experimental Subsystems	
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	271-Bsub	Experimental Subsystems	
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	271-Bsub	Experimental Subsystems	
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	271-Bsub	Experimental Subsystems	
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D- alanyl ligase (EC 6.3.2.15)	271-Bsub	Experimental Subsystems	
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	271-Bsub	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	271-Bsub	Experimental Subsystems	
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	271-Bsub	Experimental Subsystems	
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)	271-Bsub	Experimental Subsystems	
Transcription termination protein NusA	271-Bsub	Experimental Subsystems	
2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61)	271-Bsub	Experimental Subsystems	
Topoisomerase IV subunit A (EC 5.99.1.-)	271-Bsub	Experimental Subsystems	
Topoisomerase IV subunit B (EC 5.99.1.-)	271-Bsub	Experimental Subsystems	
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	271-Bsub	Experimental Subsystems	
ATP-dependent DNA helicase pcrA (EC 3.6.1.-)	271-Bsub	Experimental Subsystems	
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	271-Bsub	Experimental Subsystems	
6-phosphofructokinase (EC 2.7.1.11)	271-Bsub	Experimental Subsystems	
Phosphoglycerate kinase (EC 2.7.2.3)	271-Bsub	Experimental Subsystems	
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	271-Bsub	Experimental Subsystems	
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	271-Bsub	Experimental Subsystems	
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	271-Bsub	Experimental Subsystems	
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	271-Bsub	Experimental Subsystems	
Fatty acid/phospholipid synthesis protein plsX	271-Bsub	Experimental Subsystems	
DNA polymerase III alpha subunit (EC 2.7.7.7)	271-Bsub	Experimental Subsystems	
Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)	271-Bsub	Experimental Subsystems	
NAD kinase (EC 2.7.1.23)	271-Bsub	Experimental Subsystems	
Peptide chain release factor 1	271-Bsub	Experimental Subsystems	
Peptide chain release factor 2	271-Bsub	Experimental Subsystems	
Arrested fork binding	271-Bsub	Experimental Subsystems	
Prolyl-tRNA synthetase (EC 6.1.1.15)	271-Bsub	Experimental Subsystems	
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	271-Bsub	Experimental Subsystems	
Foldase protein PrsA precursor (EC 5.2.1.8)	271-Bsub	Experimental Subsystems	
CTP synthase (EC 6.3.4.2)	271-Bsub	Experimental Subsystems	
Glutamate racemase (EC 5.1.1.3)	271-Bsub	Experimental Subsystems	
C-type cytochrome biogenesis protein ResA (thioredoxin)	271-Bsub	Experimental Subsystems	
C-type cytochrome biogenesis protein ResB	271-Bsub	Experimental Subsystems	
C-type cytochrome biogenesis protein ResC	271-Bsub	Experimental Subsystems	
Ribonuclease III (EC 3.1.26.3)	271-Bsub	Experimental Subsystems	
Ribonuclease P protein component (EC 3.1.26.5)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L1p (L10Ae)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L2p (L8e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L3p (L3e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L4p (L1e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L5p (L11e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L6p (L9e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L9p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L10p (P0)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L7/L12 (P1/P2)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L13p (L13Ae)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L14p (L23e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L15p (L27Ae)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L16p (L10e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L17p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L18p (L5e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L19p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L20p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L21p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L22p (L17e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L23p (L23Ae)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L24p (L26e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L27p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L28p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L29p (L35e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L30p (L7e)	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L31p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L32p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L33p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L34p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L35p	271-Bsub	Experimental Subsystems	
LSU ribosomal protein L36p	271-Bsub	Experimental Subsystems	
DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	271-Bsub	Experimental Subsystems	
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	271-Bsub	Experimental Subsystems	
DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S2p (SAe)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S3p (S3e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S4p (S9e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S5p (S2e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S6p	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S7p (S5e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S8p (S15Ae)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S9p (S16e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S10p (S20e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S11p (S14e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S12p (S23e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S13p (S18e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S14p (S29e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S15p (S13e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S16p	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S17p (S11e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S18p	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S19p (S15e)	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S20p	271-Bsub	Experimental Subsystems	
SSU ribosomal protein S21p	271-Bsub	Experimental Subsystems	
Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	271-Bsub	Experimental Subsystems	
Preprotein translocase subunit SecE (TC 3.A.5.1.1)	271-Bsub	Experimental Subsystems	
Preprotein translocase secY subunit (TC 3.A.5.1.1)	271-Bsub	Experimental Subsystems	
Seryl-tRNA synthetase (EC 6.1.1.11)	271-Bsub	Experimental Subsystems	
RNA polymerase sigma factor RpoD	271-Bsub	Experimental Subsystems	
Chromosome partition protein smc	271-Bsub	Experimental Subsystems	
Peptidyl-tRNA hydrolase (EC 3.1.1.29)	271-Bsub	Experimental Subsystems	
Single-stranded DNA-binding protein	271-Bsub	Experimental Subsystems	
N-acetylmannosaminyltransferase (EC 2.4.1.187)	271-Bsub	Experimental Subsystems	
Putative CDP-glycerol:glycerophosphate glycerophosphotransferase (EC 2.7.8.-)	271-Bsub	Experimental Subsystems	
Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39)	271-Bsub	Experimental Subsystems	
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)	271-Bsub	Experimental Subsystems	
Teichoic acid translocation permease protein TagG	271-Bsub	Experimental Subsystems	
Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)	271-Bsub	Experimental Subsystems	
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	271-Bsub	Experimental Subsystems	
Transketolase (EC 2.2.1.1)	271-Bsub	Experimental Subsystems	
Thymidylate kinase (EC 2.7.4.9)	271-Bsub	Experimental Subsystems	
DNA topoisomerase I (EC 5.99.1.2)	271-Bsub	Experimental Subsystems	
Triosephosphate isomerase (EC 5.3.1.1)	271-Bsub	Experimental Subsystems	
tRNA (guanine-N1)-methyltransferase (EC 2.1.1.31)	271-Bsub	Experimental Subsystems	
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	271-Bsub	Experimental Subsystems	
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	271-Bsub	Experimental Subsystems	
Thioredoxin	271-Bsub	Experimental Subsystems	
Translation elongation factor Ts	271-Bsub	Experimental Subsystems	
Translation elongation factor Tu	271-Bsub	Experimental Subsystems	
Tyrosyl-tRNA synthetase (EC 6.1.1.1)	271-Bsub	Experimental Subsystems	
Valyl-tRNA synthetase (EC 6.1.1.9)	271-Bsub	Experimental Subsystems	
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	271-Bsub	Experimental Subsystems	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	271-Bsub	Experimental Subsystems	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	271-Bsub	Experimental Subsystems	
Phosphoglucosamine mutase (EC 5.4.2.10)	271-Bsub	Experimental Subsystems	
ATP GTP hydrolase	271-Bsub	Experimental Subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	271-Bsub	Experimental Subsystems	
DNA-cytosine methyltransferase (EC 2.1.1.37)	271-Bsub	Experimental Subsystems	
Transcription regulator [contains diacylglycerol kinase catalytic domain]	271-Bsub	Experimental Subsystems	
Sigma-M negative effector	271-Bsub	Experimental Subsystems	
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	271-Bsub	Experimental Subsystems	
Zn-dependent hydrolase (EC 3.-.-.-)	271-Bsub	Experimental Subsystems	
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	271-Bsub	Experimental Subsystems	
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	271-Bsub	Experimental Subsystems	
Conserved hypothetical protein YlaN	271-Bsub	Experimental Subsystems	
GTPase (EC 3.6.1.-)	271-Bsub	Experimental Subsystems	
GTP-binding protein	271-Bsub	Experimental Subsystems	
Ribonucleotide reduction protein NrdI	271-Bsub	Experimental Subsystems	
Hydrolase (HAD superfamily)	271-Bsub	Experimental Subsystems	
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY	271-Bsub	Experimental Subsystems	
GTP-binding protein EngA	271-Bsub	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	271-Bsub	Experimental Subsystems	
Segregation and condensation protein B	271-Bsub	Experimental Subsystems	
GTP binding protein	271-Bsub	Experimental Subsystems	
Conserved hypothetical RNA binding protein containing KH domain	271-Bsub	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	271-Bsub	Experimental Subsystems	
DNA polymerase III delta subunit (EC 2.7.7.7)	271-Bsub	Experimental Subsystems	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	271-Bsub	Experimental Subsystems	
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	271-Bsub	Experimental Subsystems	
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	271-Bsub	Experimental Subsystems	
Ribonuclease Z (EC 3.1.26.11)	271-Bsub	Experimental Subsystems	
Cysteine desulfurase (EC 4.4.1.-)	271-Bsub	Experimental Subsystems	
GTP-binding protein EngB	271-Bsub	Experimental Subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	271-Bsub	Experimental Subsystems	
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	271-Bsub	Experimental Subsystems	
Thioredoxin reductase (EC 1.8.1.9)	271-Bsub	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufB	271-Bsub	Experimental Subsystems	
Iron-sulfur cluster assembly scaffold protein IscU	271-Bsub	Experimental Subsystems	
Iron-sulfur cluster assembly protein SufD	271-Bsub	Experimental Subsystems	
Iron-sulfur cluster assembly ATPase protein SufC	271-Bsub	Experimental Subsystems	
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	271-Bsub	Experimental Subsystems	
Hypothetical protein ywlC of SUA5 family	271-Bsub	Experimental Subsystems	
Two-component response regulator yycF	271-Bsub	Experimental Subsystems	
Two-component sensor kinase yycG (EC 2.7.3.-)	271-Bsub	Experimental Subsystems	
2-oxoglutarate decarboxylase (EC 4.1.1.71)	271-Bsub	Experimental Subsystems	
Cell division protein FtsW	271-Bsub	Experimental Subsystems	
GTP-binding protein Obg	271-Bsub	Experimental Subsystems	
Cell division protein BolA	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsA	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsH (EC 3.4.24.-)	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	Bacterial_Cell_Division	Clustering-based subsystems	
Heat shock protein FtsJ/RrmJ	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsL	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsW	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division topological specificity factor MinE	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division trigger factor (EC 5.2.1.8)	Bacterial_Cell_Division	Clustering-based subsystems	
GTP-binding protein Era	Bacterial_Cell_Division	Clustering-based subsystems	
Septum site-determining protein MinC	Bacterial_Cell_Division	Clustering-based subsystems	
Septum site-determining protein MinD	Bacterial_Cell_Division	Clustering-based subsystems	
Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	Bacterial_Cell_Division	Clustering-based subsystems	
rRNA small subunit methyltransferase H	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsK	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsQ	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsX	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein MraZ	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)	Bacterial_Cell_Division	Clustering-based subsystems	
Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)	Bacterial_Cell_Division	Clustering-based subsystems	
Rod shape-determining protein MreB	Bacterial_Cell_Division	Clustering-based subsystems	
Rod shape-determining protein MreC	Bacterial_Cell_Division	Clustering-based subsystems	
Rod shape-determining protein MreD	Bacterial_Cell_Division	Clustering-based subsystems	
Septum formation protein Maf	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division initiation protein DivIVA	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	Bacterial_Cell_Division	Clustering-based subsystems	
Chromosome partitioning protein ParA	Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsH (EC 3.4.24.-)	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Peptidyl-tRNA hydrolase (EC 3.1.1.29)	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
S4-domain-containing heat shock protein	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
SSU ribosomal protein S1p	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Transcription accessory protein (S1 RNA-binding domain)	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Transcription-repair coupling factor	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
RNA binding protein, contains ribosomal protein S1 domain	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Spore cortex biosynthesis protein	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Hypothetical protein, FIG12300 and FIG043029 fams	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Low temperature requirement B protein	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Transcription-repair coupling factor fragment	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
S1 RNA binding domain protein	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Peptidyl-tRNA hydrolase, archaeal type (EC 3.1.1.29)	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
cell-division initiation protein	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
a forespore shell protein	Cell_division-ribosomal_stress_proteins_cluster	Clustering-based subsystems	
Cell division protein BolA	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsA	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsH (EC 3.4.24.-)	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Heat shock protein FtsJ/RrmJ	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsL	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsW	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division topological specificity factor MinE	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division trigger factor (EC 5.2.1.8)	RP_Bacterial_Cell_Division	Clustering-based subsystems	
GTP-binding protein Era	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Septum site-determining protein MinC	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Septum site-determining protein MinD	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	RP_Bacterial_Cell_Division	Clustering-based subsystems	
rRNA small subunit methyltransferase H	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsK	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsQ	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein FtsX	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein MraZ	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Rod shape-determining protein MreB	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Rod shape-determining protein MreC	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Rod shape-determining protein MreD	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Septum formation protein Maf	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division initiation protein DivIVA	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Chromosome partitioning protein ParA	RP_Bacterial_Cell_Division	Clustering-based subsystems	
Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
Foldase protein PrsA precursor (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
Peptidyl-prolyl cis-trans isomerase ppiD (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
FKBP-type peptidyl-prolyl cis-trans isomerase fklB (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
Putative parvulin type peptidyl-prolyl isomerase, similarity with PrsA foldase	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
Peptidyl-prolyl cis-trans isomerase ppiC (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	Protein folding
Serine acetyltransferase (EC 2.3.1.30)	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
COG1939: Ribonuclease III family protein	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) ## LSU rRNA Gm2251	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein DUF901, similar to C-terminal domain of ribosome protection-type Tc-resistance proteins	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
Putative anti-sigma factor antagonist	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein, Slr0957 homolog	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
RNA polymerase sporulation specific sigma factor SigH	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein, Spy1939 homolog	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
DegV family protein in cluster with TrmH family tRNA/rRNA methyltransferase YacO	Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	Miscellaneous	Plant-Prokaryote comparative genomics
FUPA23 P-type ATPase	Family_23_FUPA23_P-type_ATPase		
Aconitate hydratase (EC 4.2.1.3)	Family_23_FUPA23_P-type_ATPase		
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Family_23_FUPA23_P-type_ATPase		
Anthranilate synthase, aminase component (EC 4.1.3.27)	Family_23_FUPA23_P-type_ATPase		
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Family_23_FUPA23_P-type_ATPase		
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Family_23_FUPA23_P-type_ATPase		
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Family_23_FUPA23_P-type_ATPase		
DNA-damage-inducible protein J	Family_23_FUPA23_P-type_ATPase		
ABC-type sugar transport system, periplasmic component	Family_23_FUPA23_P-type_ATPase		
SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase	Family_23_FUPA23_P-type_ATPase		
ABC-type Mn2+/Zn2+ transport systems, permease components	Family_23_FUPA23_P-type_ATPase		
narrowly conserved hypothetical protein	Family_23_FUPA23_P-type_ATPase		
Exodeoxyribonuclease III (EC 3.1.11.2)	Family_23_FUPA23_P-type_ATPase		
Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	Family_23_FUPA23_P-type_ATPase		
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	Family_23_FUPA23_P-type_ATPase		
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	Family_23_FUPA23_P-type_ATPase		
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)	Family_23_FUPA23_P-type_ATPase		
DUF3710 superfamily protein	Family_23_FUPA23_P-type_ATPase		
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Family_23_FUPA23_P-type_ATPase		
PilT protein domain-containing protein	Family_23_FUPA23_P-type_ATPase		
DNA primase (EC 2.7.7.-)	Family_23_FUPA23_P-type_ATPase		
Methionine ABC transporter substrate-binding protein	Family_23_FUPA23_P-type_ATPase		
Methionine ABC transporter ATP-binding protein	Family_23_FUPA23_P-type_ATPase		
Methionine ABC transporter permease protein	Family_23_FUPA23_P-type_ATPase		
L-lactate dehydrogenase (EC 1.1.1.27)	Family_23_FUPA23_P-type_ATPase		
tRNA-Val	Family_23_FUPA23_P-type_ATPase		
tRNA-Asn	Family_23_FUPA23_P-type_ATPase		
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	Family_23_FUPA23_P-type_ATPase		
Enoyl-CoA hydratase (EC 4.2.1.17)	Family_23_FUPA23_P-type_ATPase		
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)	Family_23_FUPA23_P-type_ATPase		
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)	Family_23_FUPA23_P-type_ATPase		
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	Family_23_FUPA23_P-type_ATPase		
probable conserved integral MB Ala and Leu rich protein	Family_23_FUPA23_P-type_ATPase		
~150-200aa Ala rich Membrane protein	Family_23_FUPA23_P-type_ATPase		
Fumarate hydratase class II (EC 4.2.1.2)	Family_23_FUPA23_P-type_ATPase		
5S rRNA	Family_23_FUPA23_P-type_ATPase		
Beta-lactamase (EC 3.5.2.6)	Family_23_FUPA23_P-type_ATPase		
Outer membrane protein romA	Family_23_FUPA23_P-type_ATPase		
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	Family_23_FUPA23_P-type_ATPase		
Two component txnl regulatory protein prrA	Family_23_FUPA23_P-type_ATPase		
Sensor-type histidine kinase prrB (EC 2.7.13.3)	Family_23_FUPA23_P-type_ATPase		
C-term 1/2 of pentachlorophenol monooxygenase	Family_23_FUPA23_P-type_ATPase		
Polyketide cyclase/dehydrase related	Family_23_FUPA23_P-type_ATPase		
probable conserved TMB protein	Family_23_FUPA23_P-type_ATPase		
putative hydroxylase	Family_23_FUPA23_P-type_ATPase		
Universal stress protein UspA and related nucleotide-binding proteins	Family_23_FUPA23_P-type_ATPase		
Phenazine biosynthesis protein, PhzF family	Family_23_FUPA23_P-type_ATPase		
Protein rarD	Family_23_FUPA23_P-type_ATPase		
ADP-ribosylglycohydrolase	Family_23_FUPA23_P-type_ATPase		
putative integral membrane efflux protein	Family_23_FUPA23_P-type_ATPase		
putative transposase	Family_23_FUPA23_P-type_ATPase		
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)	Family_23_FUPA23_P-type_ATPase		
Streptomyces FUPA 23 localized putative integral membrane protein	Family_23_FUPA23_P-type_ATPase		
Guanine-hypoxanthine permease	Family_23_FUPA23_P-type_ATPase		
2'-5' RNA ligase	Family_23_FUPA23_P-type_ATPase		
Translation initiation factor 2 (IF-2; GTPase)	Family_23_FUPA23_P-type_ATPase		
Retron-type reverse transcriptase	Family_23_FUPA23_P-type_ATPase		
Generic methyltransferase	Family_23_FUPA23_P-type_ATPase		
23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) ## LSU rRNA Gm2251	Family_23_FUPA23_P-type_ATPase		
Ribonuclease HIII (EC 3.1.26.4)	Family_23_FUPA23_P-type_ATPase		
transcription antiterminator, bglG family	Family_23_FUPA23_P-type_ATPase		
PTS system, IIABC components	Family_23_FUPA23_P-type_ATPase		
Efa conserved hypothetical protein	Family_23_FUPA23_P-type_ATPase		
Pneumococcal vaccine antigen A homolog	Family_23_FUPA23_P-type_ATPase		
DNA-entry nuclease (Competence-specific nuclease) (EC 3.1.30.-)	Family_23_FUPA23_P-type_ATPase		
DUF1212 Integral membrane protein	Family_23_FUPA23_P-type_ATPase		
PTPS related superfamily hypothetical protein	Family_23_FUPA23_P-type_ATPase		
putative Transcriptional regulator YbaK/ebsC	Family_23_FUPA23_P-type_ATPase		
Isochorismate pyruvate-lyase (EC 4.-.-.-)	Family_23_FUPA23_P-type_ATPase		
Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
rRNA small subunit methyltransferase H	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
rRNA small subunit methyltransferase I	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
rRNA small subunit methyltransferase J	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
LSU m3Psi1915 methyltransferase RlmH	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
LSU m5C1962 methyltransferase RlmI	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
23S rRNA (guanine-N-2-) -methyltransferase rlmL (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA large subunit methyltransferase K	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
COG4123: Predicted O-methyltransferase	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
RNA binding methyltransferase FtsJ like	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
tRNA:m(5)U-54 MTase gid	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
RNA methyltransferase, TrmH family	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
23S rRNA (uracil-C(5))-methyltransferase RlmCD	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type	rRNA_modification_bacteria	RNA Metabolism	RNA processing and modification
Septation ring formation regulator EzrA	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Penicillin-binding protein 1A/1B (PBP1)	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Cell division protein GpsB, coordinates the switch between cylindrical and septal cell wall synthesis by re-localization of PBP1	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
RecU Holliday junction resolvase	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Chromosome replication initiation protein dnaD	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Endonuclease III (EC 4.2.99.18)	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
FIG001721: Predicted N6-adenine-specific DNA methylase	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
FIG005686: hypothetical protein	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Uncharacterized protein YppC	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Hypothetical protein in cluster with penicillin-binding protein PBP1, Staphylococcal type	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Hypothetical protein in cluster with penicillin-binding protein PBP1, Listerial type	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
Hypothetical protein in cluster with penicillin-binding protein PBP1, Bacillus type	Control_of_cell_elongation_-_division_cycle_in_Bacilli	Cell Division and Cell Cycle	
ProQ: influences osmotic activation of compatible solute ProP	CBSS-211586.1.peg.2357	Clustering-based subsystems	
Tail-specific protease precursor (EC 3.4.21.102)	CBSS-211586.1.peg.2357	Clustering-based subsystems	
Free methionine-(R)-sulfoxide reductase, contains GAF domain	CBSS-211586.1.peg.2357	Clustering-based subsystems	
ATP-dependent RNA helicase YejH	CBSS-584.1.peg.841	Clustering-based subsystems	A bicyclomycin resistance protein, a helicase, and a pseudouridine synthase
MFS family multidrug transport protein, bicyclomycin resistance protein	CBSS-584.1.peg.841	Clustering-based subsystems	A bicyclomycin resistance protein, a helicase, and a pseudouridine synthase
Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	CBSS-584.1.peg.841	Clustering-based subsystems	A bicyclomycin resistance protein, a helicase, and a pseudouridine synthase
Rod shape-determining protein MreB	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Rod shape-determining protein MreC	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Rod shape-determining protein MreD	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Septum formation protein Maf	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsZ (EC 3.4.24.-)	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsA	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsQ	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsW	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsK	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsL	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein MraZ	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Septum site-determining protein MinC	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Septum site-determining protein MinD	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division initiation protein DivIVA	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Chromosome (plasmid) partitioning protein ParA	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Chromosome (plasmid) partitioning protein ParB	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
MreB-like protein (Mbl protein)	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell-shape determining protein MreBH	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Rod shape-determining protein RodA	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein ZipA	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Z-ring-associated protein ZapA	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division topological specificity factor MinE	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsN	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsQ homolog	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Penicillin-binding protein PBP2	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
RNA polymerase sigma factor RpoS	CBSS-211586.1.peg.3133	Clustering-based subsystems	
5-nucleotidase SurE (EC 3.1.3.5)	CBSS-211586.1.peg.3133	Clustering-based subsystems	
Lipoprotein NlpD	CBSS-211586.1.peg.3133	Clustering-based subsystems	
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	CBSS-211586.1.peg.3133	Clustering-based subsystems	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	CBSS-211586.1.peg.3133	Clustering-based subsystems	
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)	CBSS-211586.1.peg.3133	Clustering-based subsystems	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	CBSS-211586.1.peg.3133	Clustering-based subsystems	
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	CBSS-211586.1.peg.3133	Clustering-based subsystems	
FIG139438: lipoprotein B	CBSS-211586.1.peg.3133	Clustering-based subsystems	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA dihydrouridine synthase A (EC 1.-.-.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA dihydrouridine synthase B (EC 1.-.-.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA-dihydrouridine synthase C (EC 1.-.-.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA:Cm32/Um32 methyltransferase	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
Predicted P-loop ATPase fused to an acetyltransferase COG1444	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (5-methoxyuridine) 34 synthase	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA_Modification_Bacteria2	Experimental Subsystems	
GTPase and tRNA-U34 5-formylation enzyme TrmE	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	tRNA_Modification_Bacteria2	Experimental Subsystems	
5-methylaminomethyl-2-thiouridine-forming enzyme mnmC	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusA	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusC	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusD	tRNA_Modification_Bacteria2	Experimental Subsystems	
Selenophosphate-dependent tRNA 2-selenouridine synthase	tRNA_Modification_Bacteria2	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	tRNA_Modification_Bacteria2	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	tRNA_Modification_Bacteria2	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	tRNA_Modification_Bacteria2	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	tRNA_Modification_Bacteria2	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	tRNA_Modification_Bacteria2	Experimental Subsystems	
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
Epoxyqueuosine (oQ) reductase QueG	tRNA_Modification_Bacteria2	Experimental Subsystems	
glutamyl-Q-tRNA synthetase	tRNA_Modification_Bacteria2	Experimental Subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	tRNA_Modification_Bacteria2	Experimental Subsystems	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	tRNA_Modification_Bacteria2	Experimental Subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	tRNA_Modification_Bacteria2	Experimental Subsystems	
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	tRNA_Modification_Bacteria2	Experimental Subsystems	
COG1720: Uncharacterized conserved protein	tRNA_Modification_Bacteria2	Experimental Subsystems	
COG4123: Predicted O-methyltransferase	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA dimethylallyltransferase (EC 2.5.1.75)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA pseudouridine synthase A (EC 4.2.1.70)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA pseudouridine synthase B (EC 4.2.1.70)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA pseudouridine synthase C (EC 4.2.1.70)	tRNA_Modification_Bacteria2	Experimental Subsystems	
Peptide chain release factor 1	tRNA_Modification_Bacteria2	Experimental Subsystems	
Peptide chain release factor 2	tRNA_Modification_Bacteria2	Experimental Subsystems	
hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA-t(6)A37 methylthiotransferase	tRNA_Modification_Bacteria2	Experimental Subsystems	
Putative tRNA-m1A22 methylase	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA:m(5)U-54 MTase gid	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA (adenine(58)-N(1))-methyltransferase TrmI	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-)	tRNA_Modification_Bacteria2	Experimental Subsystems	
Selenide,water dikinase (EC 2.7.9.3)	tRNA_Modification_Bacteria2	Experimental Subsystems	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA dihydrouridine synthase A (EC 1.-.-.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA dihydrouridine synthase B (EC 1.-.-.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA-dihydrouridine synthase C (EC 1.-.-.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA:Cm32/Um32 methyltransferase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Predicted P-loop ATPase fused to an acetyltransferase COG1444	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (5-methoxyuridine) 34 synthase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
GTPase and tRNA-U34 5-formylation enzyme TrmE	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
FAD-dependent cmnm(5)s(2)U34 oxidoreductase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA-specific 2-thiouridylase MnmA	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusA	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusC	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA 5-methylaminomethyl-2-thiouridine synthase TusD	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Selenophosphate-dependent tRNA 2-selenouridine synthase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Epoxyqueuosine (oQ) reductase QueG	tRNA_modification_Escherichia_coli	Experimental Subsystems	
glutamyl-Q-tRNA synthetase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	tRNA_modification_Escherichia_coli	Experimental Subsystems	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	tRNA_modification_Escherichia_coli	Experimental Subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	tRNA_modification_Escherichia_coli	Experimental Subsystems	
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	tRNA_modification_Escherichia_coli	Experimental Subsystems	
COG1720: Uncharacterized conserved protein	tRNA_modification_Escherichia_coli	Experimental Subsystems	
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA dimethylallyltransferase (EC 2.5.1.75)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA pseudouridine synthase A (EC 4.2.1.70)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA pseudouridine synthase B (EC 4.2.1.70)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA pseudouridine synthase C (EC 4.2.1.70)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Peptide chain release factor 1	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Peptide chain release factor 2	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Selenide,water dikinase (EC 2.7.9.3)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)	tRNA_modification_Escherichia_coli	Experimental Subsystems	
Ammonium transporter	Ammonia_assimilation	Nitrogen Metabolism	
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Ammonia_assimilation	Nitrogen Metabolism	
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Ammonia_assimilation	Nitrogen Metabolism	
Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine synthetase type I (EC 6.3.1.2)	Ammonia_assimilation	Nitrogen Metabolism	
Nitrogen regulation protein NR(I)	Ammonia_assimilation	Nitrogen Metabolism	
Nitrogen regulation protein NtrB (EC 2.7.13.3)	Ammonia_assimilation	Nitrogen Metabolism	
Nitrogen regulatory protein P-II	Ammonia_assimilation	Nitrogen Metabolism	
Nitrogen regulatory protein P-II, glnK	Ammonia_assimilation	Nitrogen Metabolism	
[Protein-PII] uridylyltransferase (EC 2.7.7.59)	Ammonia_assimilation	Nitrogen Metabolism	
Ammonium transporter family	Ammonia_assimilation	Nitrogen Metabolism	
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Ammonia_assimilation	Nitrogen Metabolism	
Global nitrogen regulatory protein, CRP family of transcriptional regulators	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine synthetase inactivating factor IF17	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine synthetase inactivating factor IF7	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Ammonia_assimilation	Nitrogen Metabolism	
Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13)	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine amidotransferase, class-II	Ammonia_assimilation	Nitrogen Metabolism	
ammonium/methylammonium permease	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Ammonia_assimilation	Nitrogen Metabolism	
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2)	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine amidotransferase protein GlxB (EC 2.4.2.-)	Ammonia_assimilation	Nitrogen Metabolism	
Glutamate synthase, alpha subunit domain protein	Ammonia_assimilation	Nitrogen Metabolism	
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Ammonia_assimilation	Nitrogen Metabolism	
Ribosome hibernation protein YhbH	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
RNA polymerase sigma-54 factor RpoN	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
Phosphocarrier protein, nitrogen regulation associated	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
Lipopolysaccharide ABC transporter, ATP-binding protein LptB	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
Hypothetical ATP-binding protein UPF0042, contains P-loop	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
LptA, protein essential for LPS transport across the periplasm	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
Arabinose 5-phosphate isomerase (EC 5.3.1.13)	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
PTS system nitrogen-specific IIA component, PtsN	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45)	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
Uncharacterized protein YrbK clustered with lipopolysaccharide transporters	Lipopolysaccharide_assembly_cluster	Clustering-based subsystems	
2-oxoglutarate decarboxylase (EC 4.1.1.71)	Cyanobacterial_bypass_in_the_TCA	Central metabolism	TCA
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)	Cyanobacterial_bypass_in_the_TCA	Central metabolism	TCA
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2)	Coenzyme_B12_related_Hypothetical:_Clusters_with_cobST	Clustering-based subsystems	Clustering-based subsystems
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2)	Coenzyme_B12_related_Hypothetical:_Clusters_with_cobST	Clustering-based subsystems	Clustering-based subsystems
FIG003437: hypothetical with DnaJ-like domain	Coenzyme_B12_related_Hypothetical:_Clusters_with_cobST	Clustering-based subsystems	Clustering-based subsystems
FIG137478: Hypothetical protein YbgI	CBSS-100226.1.peg.2266	Clustering-based subsystems	
FIG137478: Hypothetical protein	CBSS-100226.1.peg.2266	Clustering-based subsystems	
FIG006762: Phosphoglycerate mutase family	CBSS-100226.1.peg.2266	Clustering-based subsystems	
FIG143828: Hypothetical protein YbgA	EC699-706	Clustering-based subsystems	
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	EC699-706	Clustering-based subsystems	
Di/tripeptide permease YbgH	EC699-706	Clustering-based subsystems	
FIG137478: Hypothetical protein YbgI	EC699-706	Clustering-based subsystems	
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	EC699-706	Clustering-based subsystems	
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	EC699-706	Clustering-based subsystems	
Lactam utilization protein LamB	EC699-706	Clustering-based subsystems	
Endonuclease VIII	EC699-706	Clustering-based subsystems	
Allophanate hydrolase (EC 3.5.1.54)	EC699-706	Clustering-based subsystems	
Deoxyribodipyrimidine photolyase, type II (EC 4.1.99.3)	EC699-706	Clustering-based subsystems	
D-nopaline/octopine oxidase subunit B	D-nopaline_catabolic_operon	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
D-nopaline catabolic operon protein 2	D-nopaline_catabolic_operon	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
D-nopaline/octopine oxidase subunit A	D-nopaline_catabolic_operon	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginase (EC 3.5.3.1)	D-nopaline_catabolic_operon	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
D-nopaline dehydrogenase (EC 1.5.1.19)	D-nopaline_catabolic_operon	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine cyclodeaminase (EC 4.3.1.12)	D-nopaline_catabolic_operon	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
D-octopine dehydrogenase (EC 1.5.1.11)	D-nopaline_catabolic_operon	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
NAD_and_NADP_-_test_subsystem			
Thermosome subunit	Thermosome,_archaeal	Protein Metabolism	Protein folding
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate synthase	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Proposed lipoate regulatory protein YbeD	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Serine hydroxymethyltransferase (EC 2.1.2.1)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Pyridoxal kinase (EC 2.7.1.35)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Cell division protein FtsZ (EC 3.4.24.-)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Predicted transcriptional regulator of pyridoxine metabolism	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Glycine cleavage system H protein	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Transmembrane protein MT2276, clustered with lipoate gene	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A, C-terminal 70 percent	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A, N-terminal 30 percent	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A type 2	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate synthase, cyanobacterial paralog	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
4-pyridoxolactonase (EC 3.1.1.27)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Pyridoxal 4-dehydrogenase (EC 1.1.1.107)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx)	BEY_LIP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Thiazole biosynthetic enzyme Thi4	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HAD-like hydrolase domain	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
TenA2, thiaminase II (EC 3.5.99.2) homolog involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial thiamine diphosphate transporter TPC1	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	
D-arabino-3-hexulose 6-phosphate formaldehyde-lyase (EC 4.1.2.43)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
6-phospho-3-hexuloisomerase (EC 5.3.1.27)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Fructose-bisphosphate aldolase, archaeal class I (EC 4.1.2.13)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
6-phosphogluconolactonase (EC 3.1.1.31)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Transcriptional regulator HxlR, formaldehyde assimilation	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Phosphogluconate dehydratase (EC 4.2.1.12)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Formaldehyde activating enzyme	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
related to 6-phospho-3-hexuloisomerase	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Glucose-6-phosphate isomerase, archaeal II (EC 5.3.1.9)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Hypothetical protein with distant similarity to Ribonuclease E inhibitor RraA (former MenG)	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
Putative pentose isomerase	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	One-carbon Metabolism
GTP cyclohydrolase II (EC 3.5.4.25)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Uncharacterized protein COG3236	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin kinase (EC 2.7.1.26)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
N-terminal domain of CinA protein, COG1058	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FAD pyrophosphatase (EC 3.6.1.18)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN hydrolase, high substrate specificity (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Putative FMN hydrolase (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Putative pseudogene, GTP cyclohydrolase II (EC 3.5.4.25)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Putative pseudogene, FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Diaminopimelate epimerase (EC 5.1.1.7)	CBSS-323850.3.peg.3269	Clustering-based subsystems	Hypothetical in Lysine biosynthetic cluster
Protein of unknown function DUF484	CBSS-323850.3.peg.3269	Clustering-based subsystems	Hypothetical in Lysine biosynthetic cluster
Diaminopimelate decarboxylase (EC 4.1.1.20)	CBSS-323850.3.peg.3269	Clustering-based subsystems	Hypothetical in Lysine biosynthetic cluster
2-haloalkanoic acid dehalogenase (EC 3.8.1.2)	CBSS-323850.3.peg.3269	Clustering-based subsystems	Hypothetical in Lysine biosynthetic cluster
Tyrosine recombinase XerC	CBSS-323850.3.peg.3269	Clustering-based subsystems	Hypothetical in Lysine biosynthetic cluster
N-acetylglutamate synthase (EC 2.3.1.1)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylglutamate kinase (EC 2.7.2.8)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine aminotransferase (EC 2.6.1.11)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate N-acetyltransferase (EC 2.3.1.35)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate synthase (EC 6.3.4.5)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate lyase (EC 4.3.2.1)	Arginine_metabolism_and_urea_cycle_in_plants	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Tryptophan_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate synthase, aminase component (EC 4.1.3.27)	Tryptophan_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Tryptophan_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Tryptophan_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase alpha chain (EC 4.2.1.20)	Tryptophan_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase beta chain (EC 4.2.1.20)	Tryptophan_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase III (EC 5.4.99.5)	Tyrosine_and_phenylalanine_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Glutamate--prephenate aminotransferase (EC 2.6.1.79)	Tyrosine_and_phenylalanine_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Arogenate dehydrogenase (EC 1.3.1.78)	Tyrosine_and_phenylalanine_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Arogenate dehydratase (EC 4.2.1.91)	Tyrosine_and_phenylalanine_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tyrosine aminotransferase (EC 2.6.1.5)	Tyrosine_and_phenylalanine_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydratase (EC 4.2.1.51)	Tyrosine_and_phenylalanine_metabolism_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Acetolactate synthase large subunit (EC 2.2.1.6)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase small subunit (EC 2.2.1.6)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Ketol-acid reductoisomerase (EC 1.1.1.86)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Dihydroxy-acid dehydratase (EC 4.2.1.9)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
2-isopropylmalate synthase (EC 2.3.3.13)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Threonine dehydratase biosynthetic (EC 4.3.1.19)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	Branched-chain_amino_acid_metabolism_in_plants	Amino Acids and Derivatives	Branched-chain amino acids
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Pyruvate,phosphate dikinase (EC 2.7.9.1)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Citrate synthase (si) (EC 2.3.3.1)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aconitate hydratase (EC 4.2.1.3)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADH] (EC 1.4.1.14)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Arginase (EC 3.5.3.1)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Ornithine aminotransferase (EC 2.6.1.13)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate aminotransferase (EC 2.6.1.1)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-3-cyanoalanine synthase (EC 4.4.1.9)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
3-cyanoalanine hydratase (4.2.1.65)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Cyanoalanine nitrilase (EC 3.5.5.4)	Glutamine,_glutamate,_aspartate,_asparagine_metabolism_in_plants	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
ATP phosphoribosyltransferase (EC 2.4.2.17)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase [alternative form] (EC 3.1.3.15)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Histidinol dehydrogenase (EC 1.1.1.23)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Adenylosuccinate synthetase (EC 6.3.4.4)	Histidine_Biosynthesis_in_plants	Amino Acids and Derivatives	Histidine Metabolism
Aspartokinase (EC 2.7.2.4)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate epimerase (EC 5.1.1.7)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate decarboxylase (EC 4.1.1.20)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine dehydrogenase (EC 1.1.1.3)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine kinase (EC 2.7.1.39)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine synthase (EC 4.2.3.1)	Lysine_and_threonine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Glutamate 5-kinase (EC 2.7.2.11)	Proline_metabolism_in_plants	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Proline_metabolism_in_plants	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Proline_metabolism_in_plants	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Arginase (EC 3.5.3.1)	Proline_metabolism_in_plants	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ornithine aminotransferase (EC 2.6.1.13)	Proline_metabolism_in_plants	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Phosphoglycolate phosphatase (EC 3.1.3.18)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Glycolate oxidase (EC 1.1.3.15)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Serine hydroxymethyltransferase (EC 2.1.2.1)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Dihydrolipoamide dehydrogenase of glycine cleavage system, L protein (EC 1.8.1.4)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Glycine cleavage system H protein	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Glutamate-glyoxylate aminotransferase (EC 2.6.1.4)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
NADH-dependent hydroxypyruvate reductase (EC 1.1.1.29)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Hydroxypyruvate reductase (EC 1.1.1.81)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
D-glycerate 3-kinase (EC 2.7.1.31), plant type	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Malate synthase (EC 2.3.3.9)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
2-oxoglutarate/malate translocator	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Catalase (EC 1.11.1.6)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Photorespiration_(oxidative_C2_cycle)_in_plants	Carbohydrates	CO2 fixation
Transketolase (EC 2.2.1.1)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Transaldolase (EC 2.2.1.2)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Phosphoribulokinase (EC 2.7.1.19)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Enolase (EC 4.2.1.11)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Pyruvate kinase (EC 2.7.1.40)	Rubisco_shunt_in_plants	Carbohydrates	CO2 fixation
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
ATP-citrate (pro-S-)-lyase, subunit 1 (EC 2.3.3.8)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
ATP-citrate (pro-S-)-lyase, subunit 2 (EC 2.3.3.8)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Pyruvate decarboxylase (EC 4.1.1.1)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Alcohol dehydrogenase (EC 1.1.1.1)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
L-lactate dehydrogenase (EC 1.1.1.27)	Acetyl-CoA_biosynthesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Alpha-galactosidase (EC 3.2.1.22)	Melibiose_degradation_in_plants	Carbohydrates	Di- and oligosaccharides
Phosphoglycerate kinase (EC 2.7.2.3)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Phosphoglucomutase (EC 5.4.2.2)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Sucrose-phosphate synthase (EC 2.4.1.14)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Sucrose-phosphate phosphatase (EC 3.1.3.24)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Sucrose alpha-glucosidase, alkaline/neutral invertase (EC 3.2.1.26)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Sucrose synthase (EC 2.4.1.13)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Fructokinase (EC 2.7.1.4)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Hexokinase (EC 2.7.1.1)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
6-phosphofructokinase (EC 2.7.1.11)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Triosephosphate isomerase (EC 5.3.1.1)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Enolase (EC 4.2.1.11)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Pyruvate kinase (EC 2.7.1.40)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Pyruvate decarboxylase (EC 4.1.1.1)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
L-lactate dehydrogenase (EC 1.1.1.27)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Alcohol dehydrogenase (EC 1.1.1.1)	Sucrose_metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15)	Trehalose__metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Trehalose-6-phosphate phosphatase (EC 3.1.3.12)	Trehalose__metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Trehalase (EC 3.2.1.28)	Trehalose__metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Hexokinase (EC 2.7.1.1)	Trehalose__metabolism_in_plants	Carbohydrates	Di- and oligosaccharides
Mannose-6-phosphate isomerase (EC 5.3.1.8)	D-mannitol_and_D-mannose_degradation_in_plants	Carbohydrates	Monosaccharides
UDP-glucose 4-epimerase (EC 5.1.3.2)	Galactose_degradation_in_plants	Carbohydrates	Monosaccharides
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Galactose_degradation_in_plants	Carbohydrates	Monosaccharides
UDP-glucose dehydrogenase (EC 1.1.1.22)	Galactose_degradation_in_plants	Carbohydrates	Monosaccharides
Sucrose synthase (EC 2.4.1.13)	Galactose_degradation_in_plants	Carbohydrates	Monosaccharides
Aldose 1-epimerase (EC 5.1.3.3)	Galactose_degradation_in_plants	Carbohydrates	Monosaccharides
Galactokinase (EC 2.7.1.6)	Galactose_degradation_in_plants	Carbohydrates	Monosaccharides
Hexokinase (EC 2.7.1.1)	Galactose_degradation_in_plants	Carbohydrates	Monosaccharides
Xylose isomerase (EC 5.3.1.5)	Xylose_utilization_in_plants	Carbohydrates	Monosaccharides
Xylulose kinase (EC 2.7.1.17)	Xylose_utilization_in_plants	Carbohydrates	Monosaccharides
Hexokinase (EC 2.7.1.1)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
Phosphoglucomutase (EC 5.4.2.2)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
Glucose-6-phosphate isomerase (EC 5.3.1.9)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
Mannose-6-phosphate isomerase (EC 5.3.1.8)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
Phosphomannomutase (EC 5.4.2.8)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13 )	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
GDP-mannose 4,6-dehydratase (EC 4.2.1.47)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
GDP-L-fucose synthetase (EC 1.1.1.271)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
L-fucose kinase (EC 2.7.1.52)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
Fucose-1-phosphate guanylyltransferase (EC 2.7.7.30)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
GDP-mannose 3,5-epimerase (EC 5.1.3.18)	GDP-sugars_biosynthesis_and_interconversions_in_plants	Carbohydrates	Nucleotide sugars
Galacturonokinase (EC 2.7.1.44)	UDP-D-galacturonate_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-sugar pyrophosphorylase (EC 2.7.7.64)	UDP-D-galacturonate_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-glucuronate 4-epimerase (EC 5.1.3.6)	UDP-D-galacturonate_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
Inositol oxygenase (EC 1.13.99.1)	UDP-D-glucuronate,_UDP-D-xylose_and_UDP-D-apiose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
Glucuronokinase (EC 2.7.1.43)	UDP-D-glucuronate,_UDP-D-xylose_and_UDP-D-apiose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-D-apiose synthase (EC 4.1.1.-)	UDP-D-glucuronate,_UDP-D-xylose_and_UDP-D-apiose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-glucose dehydrogenase (EC 1.1.1.22)	UDP-D-glucuronate,_UDP-D-xylose_and_UDP-D-apiose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-glucuronate decarboxylase (EC 4.1.1.35)	UDP-D-glucuronate,_UDP-D-xylose_and_UDP-D-apiose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
L-arabinokinase (EC 2.7.1.46)	UDP-L-arabinose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-sugar pyrophosphorylase (EC 2.7.7.64)	UDP-L-arabinose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-arabinose 4-epimerase (EC 5.1.3.5)	UDP-L-arabinose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-glucose 4,6-dehydratase (EC 4.2.1.76)	UDP-L-rhamnose_Biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-4-dehydro-6-deoxy-glucose 3,5-epimerase (no EC)	UDP-L-rhamnose_Biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-4-dehydro-rhamnose reductase (EC 1.1.1.-)	UDP-L-rhamnose_Biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
Phosphoglucomutase (EC 5.4.2.2)	UDP-glucose_and_UDP-galactose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	UDP-glucose_and_UDP-galactose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
Inorganic pyrophosphatase (EC 3.6.1.1)	UDP-glucose_and_UDP-galactose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
Pyrophosphate-energized proton pump (EC 3.6.1.1)	UDP-glucose_and_UDP-galactose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
Sucrose synthase (EC 2.4.1.13)	UDP-glucose_and_UDP-galactose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
UDP-glucose 4-epimerase (EC 5.1.3.2)	UDP-glucose_and_UDP-galactose_biosynthesis_in_plants	Carbohydrates	Nucleotide sugars
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Starch_biosynthesis_in_plants	Carbohydrates	Polysaccharides
Phosphoglucomutase (EC 5.4.2.2)	Starch_biosynthesis_in_plants	Carbohydrates	Polysaccharides
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	Starch_biosynthesis_in_plants	Carbohydrates	Polysaccharides
Starch synthase, ADP-glucose transglucosylase (EC 2.4.1.21)	Starch_biosynthesis_in_plants	Carbohydrates	Polysaccharides
1,4-alpha-glucan (starch) branching enzyme, GH-13-type (EC 2.4.1.18)	Starch_biosynthesis_in_plants	Carbohydrates	Polysaccharides
Beta-fructofuranosidase, fructan exohydrolase (EC 3.2.1.80)	Fructan_degradation_in_plants	Carbohydrates	Polysaccharides
Starch, water dikinase (EC 2.7.9.4)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Phosphoglucan, water dikinase (EC 2.7.9.5)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Beta-amylase (EC 3.2.1.2)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Starch debranching enzyme, isoamylase (EC 3.2.1.68)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Alpha-amylase (EC 3.2.1.1)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Phosphoglucomutase (EC 5.4.2.2)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Hexokinase (EC 2.7.1.1)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Alpha-glucosidase (EC 3.2.1.20)	Starch_degradation_in_plants	Carbohydrates	Polysaccharides
Glutamyl-tRNA synthetase (EC 6.1.1.17)	Core_tetrapyrrole_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamyl-tRNA reductase (EC 1.2.1.70)	Core_tetrapyrrole_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	Core_tetrapyrrole_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen synthase (EC 4.2.1.24)	Core_tetrapyrrole_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen deaminase (EC 2.5.1.61)	Core_tetrapyrrole_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase (EC 4.2.1.75)	Core_tetrapyrrole_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Monogalactosyldiacylglycerol synthase (EC 2.4.1.46)	Glycosylglycerides_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
Digalactosyldiacylglycerol synthase (EC 2.4.1.241)	Glycosylglycerides_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase (EC 1.14.19.-)	Glycosylglycerides_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
Omega-3 fatty acid desaturase (EC 1.14.19.-)	Glycosylglycerides_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
Omega-6 fatty acid desaturase (EC 1.14.19.-)	Glycosylglycerides_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
UDP-sulfoquinovose synthase (EC 3.13.1.1)	Glycosylglycerides_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
UDP-sulfoquinovose:DAG sulfoquinovosyltransferase (EC 2.4.1.-)	Glycosylglycerides_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Palmitoyl-[acyl carrier protein] thioesterase (EC 3.1.2.-)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Stearoyl-[acyl carrier protein] thioesterase (EC 3.1.2.-)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Oleoyl-[acyl carrier protein] thioesterase (EC 3.1.2.14)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA thioesterase II (EC 3.1.2.-)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Probable acyl-ACP desaturase, Stearoyl-ACP desaturase (EC 1.14.19.2)	Fatty_acid_biosynthesis_in_plants_(plastidial)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Very-long-chain 3-oxoacyl-CoA synthase (EC 2.3.1.199)	Very_long__fatty_acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Very-long-chain 3-oxoacyl-CoA reductase of elongase (EC 1.1.1.330)	Very_long__fatty_acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase (EC 4.2.1.134)	Very_long__fatty_acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Very-long-chain enoyl-CoA reductase (EC 1.3.1.93)	Very_long__fatty_acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Isoprenoid_biosynthesis_in_plants,_mevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	Isoprenoid_biosynthesis_in_plants,_mevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)	Isoprenoid_biosynthesis_in_plants,_mevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Mevalonate kinase (EC 2.7.1.36)	Isoprenoid_biosynthesis_in_plants,_mevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phosphomevalonate kinase (EC 2.7.4.2)	Isoprenoid_biosynthesis_in_plants,_mevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Diphosphomevalonate decarboxylase (EC 4.1.1.33)	Isoprenoid_biosynthesis_in_plants,_mevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	Isoprenoid_biosynthesis_in_plants,_mevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	Isoprenoid_biosynthesis_in_plants,_nonmevalonate_branch	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)	CDP-diacylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	CDP-diacylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	CDP-diacylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	CDP-diacylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	Cardiolipin_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Cardiolipin synthetase (EC 2.7.8.-)	Cardiolipin_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
L-Serine decarboxylase (EC 4.1.1.-)	Choline_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Ethanolamine kinase (EC 2.7.1.82)	Choline_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphoethanolamine N-methyltransferase (EC 2.1.1.103)	Choline_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Cholinephosphate cytidylyltransferase (EC 2.7.7.15)	Choline_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Diacylglycerol cholinephosphotransferase (EC 2.7.8.2)	Choline_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phospholipase D (EC 3.1.4.4)	Choline_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Diacylglycerol cholinephosphotransferase (EC 2.7.8.2)	PUFA_enrichment_in_oilseed_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidylcholine:diacylglycerol cholinephosphotransferase (EC 2.7.8.-)	PUFA_enrichment_in_oilseed_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Choline kinase (EC 2.7.1.32)	Phosphatidylcholine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Cholinephosphate cytidylyltransferase (EC 2.7.7.15)	Phosphatidylcholine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Diacylglycerol cholinephosphotransferase (EC 2.7.8.2)	Phosphatidylcholine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphoethanolamine N-methyltransferase (EC 2.1.1.103)	Phosphatidylcholine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidyl-N-methylethanolamine N-methyltransferase (EC 2.1.1.71)	Phosphatidylcholine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidylserine decarboxylase (EC 4.1.1.65)	Phosphatidylethanolamine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Ethanolamine kinase (EC 2.7.1.82)	Phosphatidylethanolamine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)	Phosphatidylethanolamine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Ethanolaminephosphotransferase (EC 2.7.8.1)	Phosphatidylethanolamine_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)	Phosphatidylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	Phosphatidylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Phosphatidylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	Phosphatidylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	Phosphatidylglycerol_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Omega-3 linoleate desaturase (EC 1.14.19.-)	Phospholipid_desaturation_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Omega-3 fatty acid desaturase (EC 1.14.19.-)	Phospholipid_desaturation_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Omega-6 oleate desaturase (EC 1.14.19.-)	Phospholipid_desaturation_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Omega-6 fatty acid desaturase (EC 1.14.19.-)	Phospholipid_desaturation_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
FAD4-type (trans) fatty acid desaturase (EC 1.14.19.-)	Phospholipid_desaturation_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Serine palmitoyltransferase (EC 2.3.1.50)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
3-dehydrosphinganine reductase (EC 1.1.1.102)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Sphinganine C(4)-monooxygenase (EC 1.14.13.169)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Sphinganine kinase (EC 2.7.1.91)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Dihydrosphingosine delta-4 desaturase (EC 1.14.99.-)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Inositol-phosphorylceramide synthase (EC 2.7.8.-)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Sphingolipid fatty acid 2-hydroxylase	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Delta-8-sphingolipid desaturase (EC 1.14.19.4)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Ceramide kinase (EC 2.7.1.138)	Sphingolipid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Phospholipids
Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	Triacylglycerol_metabolism_in_plants	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Triacylglycerol_metabolism_in_plants	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Phosphatidate phosphatase (EC 3.1.3.4)	Triacylglycerol_metabolism_in_plants	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Diacylglycerol O-acyltransferase (EC 2.3.1.20)	Triacylglycerol_metabolism_in_plants	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158)	Triacylglycerol_metabolism_in_plants	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Amidophosphoribosyltransferase (EC 2.4.2.14)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Adenylosuccinate lyase (EC 4.3.2.2)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
IMP cyclohydrolase (EC 3.5.4.10)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Adenylosuccinate synthetase (EC 6.3.4.4)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Adenylate kinase (EC 2.7.4.3)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Nucleoside diphosphate kinase (EC 2.7.4.6)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Guanylate kinase (EC 2.7.4.8)	Purine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Purines
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Aspartate carbamoyltransferase (EC 2.1.3.2)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Dihydroorotase (EC 3.5.2.3)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Dihydroorotate dehydrogenase [quinone] (EC 1.3.5.2)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Orotate phosphoribosyltransferase (EC 2.4.2.10)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
CTP synthase (EC 6.3.4.2)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Nucleoside diphosphate kinase (EC 2.7.4.6)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Uridine monophosphate/cytidine monophosphate kinase (EC 2.7.4.14)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Apyrase, ATP-diphosphatase (EC 3.6.1.5)	Pyrimidine_de_novo_biosynthesis_in_plants	Nucleosides and Nucleotides	Pyrimidines
Callose synthase (EC 2.4.1.34)	Callose_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12)	Cellulose_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Mid-chain alkane hydroxylase, alcohol- and ketone- forming (no EC)	Cuticular_wax_in_plants	Plant cell walls and outer surfaces	
Fatty aldehyde decarbonylase (EC 4.1.99.-)	Cuticular_wax_in_plants	Plant cell walls and outer surfaces	
Long chain fatty acyl-CoA reductase [alcohol-forming] (EC 1.2.1.n2)	Cuticular_wax_in_plants	Plant cell walls and outer surfaces	
Long-chain-alcohol O-fatty-acyltransferase (EC 2.3.1.75)	Cuticular_wax_in_plants	Plant cell walls and outer surfaces	
Diacylglycerol O-acyltransferase (EC 2.3.1.20)	Cuticular_wax_in_plants	Plant cell walls and outer surfaces	
Wax synthetase, long-chain-alcohol O-fatty-acyltransferase (2.3.1.75) family protein	Cuticular_wax_in_plants	Plant cell walls and outer surfaces	
Polygalacturonate 4-alpha-galacturonosyltransferase (EC 2.4.1.43)	Pectin_metabolism_in_plants	Plant cell walls and outer surfaces	
Xylogalacturonan beta-1,3-xylosyltransferase (EC 2.4.2.41)	Pectin_metabolism_in_plants	Plant cell walls and outer surfaces	
Pectinesterase (EC 3.1.1.11)	Pectin_metabolism_in_plants	Plant cell walls and outer surfaces	
Polygalacturonase (EC 3.2.1.15)	Pectin_metabolism_in_plants	Plant cell walls and outer surfaces	
Phenylalanine ammonia-lyase (EC 4.3.1.24)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
5-O-(4-coumaroyl)-D-quinate/shikimate 3'-hydroxylase (EC 1.14.13.36)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
4-coumarate--CoA ligase (EC 6.2.1.12)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Shikimate O-hydroxycinnamoyltransferase (EC 2.3.1.133)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Cinnamoyl-CoA reductase (EC 1.2.1.44)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Cinnamyl alcohol dehydrogenase/reductase (EC 1.1.1.195)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Ferulate-5-hydroxylase (EC 1.14.13.-)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Hydroxycinnamate 4-beta-glucosyltransferase (EC 2.4.1.126)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Coniferyl-alcohol and sinapyl-alcohol glucosyltransferase (EC 2.4.1.111)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
UDP-glucose:sinapate glucosyltransferase (EC 2.4.1.120)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Peroxidase (EC 1.11.1.7)	Lignin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Fatty acid omega-hydroxylase (EC 1.14.13.-)	Cutin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Fatty acid in-chain hydroxylase (no EC)	Cutin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Long-chain fatty acid omega-alcohol dehydrogenase (EC 1.1.1.-)	Cutin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Hydroxycinnamoyl-CoA:omega-hydroxy fatty acid transferase	Cutin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Lauric acid in-chain hydroxylase (no EC)	Sporopollenin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Long-chain fatty acid omega-hydroxylase of sporopollenin biosynthesis (EC 1.14.13.-)	Sporopollenin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Fatty acyl-CoA synthetase of sporopollenin biosynthesis (6.2.1.-)	Sporopollenin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Polyketide synthase of sporopollenin biosynthesis	Sporopollenin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Tetraketide alpha-pyrone reductase of sporopollenin biosynthesis	Sporopollenin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Phenylalanine ammonia-lyase (EC 4.3.1.24)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
5-O-(4-coumaroyl)-D-quinate/shikimate 3'-hydroxylase (EC 1.14.13.36)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
4-coumarate--CoA ligase (EC 6.2.1.12)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Tyramine N-feruloyltransferase (EC 2.3.1.110)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
P450-dependent fatty acid omega-hydroxylase (EC 1.14.-.-)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Long-chain fatty acid omega-alcohol dehydrogenase (EC 1.1.1.-)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Very long chain fatty acid omega-hydroxylase (EC 1.14.-.-)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Long chain fatty acyl-CoA reductase [alcohol-forming] (EC 1.2.1.n2)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Cinnamoyl-CoA reductase (EC 1.2.1.44)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Fatty alcohol:caffeoyl-CoA caffeoyl transferase	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Omega-hydroxypalmitate O-feruloyl transferase (EC 2.3.1.188)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Glycerol-3-phosphate 2-O-acyltransferase (EC 2.3.1.198)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Peroxidase (EC 1.11.1.7)	Suberin_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)	Xylan_degradation_in_plants	Plant cell walls and outer surfaces	
Beta-xylosidase (EC 3.2.1.37)	Xylan_degradation_in_plants	Plant cell walls and outer surfaces	
Xyloglucan 4-glucosyltransferase (EC 2.4.1.168)	Xyloglucan_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Xyloglucan 6-alpha-D-xylosyltransferase (EC 2.4.2.39)	Xyloglucan_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Xyloglucan galactosyltransferase (no EC)	Xyloglucan_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69)	Xyloglucan_biosynthesis_in_plants	Plant cell walls and outer surfaces	
Inositol-1-phosphate synthase (EC 5.5.1.4)	Phosphoinositides_biosynthesis_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
Inositol-1-monophosphatase (EC 3.1.3.25)	Phosphoinositides_biosynthesis_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
CDP-diacylglycerol--inositol 3-phosphatidyltransferase (EC 2.7.8.11)	Phosphoinositides_biosynthesis_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
Phosphatidylinositol 4-kinase alpha (EC 2.7.1.67)	Phosphoinositides_biosynthesis_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
Phosphatidylinositol 4-kinase beta (EC 2.7.1.67)	Phosphoinositides_biosynthesis_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
Phosphatidylinositol 3-kinase (EC 2.7.1.137)	Phosphoinositides_biosynthesis_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68)	Phosphoinositides_biosynthesis_in_plants	Regulation and Cell signaling	Signal transduction in Eukaryotes
Alternative NAD(P)H dehydrogenase (EC 1.6.-.-) NDA	Alternative_NAD(P)H_dehydrogenases_in_plants	Respiration	
Alternative NAD(P)H dehydrogenase (EC 1.6.-.-) NDB	Alternative_NAD(P)H_dehydrogenases_in_plants	Respiration	
Alternative NAD(P)H dehydrogenase (EC 1.6.-.-) NDC	Alternative_NAD(P)H_dehydrogenases_in_plants	Respiration	
NADPH--cytochrome P450 reductase (EC 1.6.2.4)	Alternative_NAD(P)H_dehydrogenases_in_plants	Respiration	
NADPH-dependent diflavin oxidoreductase (EC 1.6.99.-)	Alternative_NAD(P)H_dehydrogenases_in_plants	Respiration	
Cytochrome c	Soluble_electron_carriers_in_plants	Respiration	
Cytochrome b5	Soluble_electron_carriers_in_plants	Respiration	
Plastocyanin	Soluble_electron_carriers_in_plants	Respiration	
Cytochrome C553 (soluble cytochrome f)	Soluble_electron_carriers_in_plants	Respiration	
soluble [2Fe-2S] ferredoxin	Soluble_electron_carriers_in_plants	Respiration	
V-type ATP synthase subunit A (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit B (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit C (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit D (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit E (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit F (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit I (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit K (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit G (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type ATP synthase subunit H (EC 3.6.3.14)	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type proton ATPase V0 sector subunit a	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type proton ATPase V0 sector proteolipid subunit c	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type proton ATPase V0 sector subunit c''	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type proton ATPase V0 sector subunit d	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
V-type proton ATPase V0 sector subunit e	V-Type_ATP_synthase_in_plants_(vacuolar)	Respiration	ATP synthases
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
Putative ubiquinol-cytochrome c reductase complex core protein I (subunit COR1)	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
Putative ubiquinol-cytochrome c reductase complex core protein II (subunit COR2)	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
Ubiquinol-cytochrome c reductase complex subunit 6 (hinge protein)	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
Ubiquinol-cytochrome c reductase complex subunit 7	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
Ubiquinol-cytochrome c reductase complex subunit 8 (ubiquinone-binding protein QP-C)	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
Ubiquinol-cytochrome c reductase complex subunit 9	Respiratory_complex_III_(cytochrome_b-c1)_in_plants	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] (EC 1.6.5.3) mitochondrial-encoded chain 1, ND1	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] (EC 1.6.5.3) mitochondrial-encoded chain 2, ND2	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] (EC 1.6.5.3) mitochondrial-encoded chain 3, ND3	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] (EC 1.6.5.3) mitochondrial-encoded chain 4, ND4	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] (EC 1.6.5.3) mitochondrial-encoded chain 4L, ND4L	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] (EC 1.6.5.3) mitochondrial-encoded chain 5, ND5	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] (EC 1.6.5.3) mitochondrial-encoded chain 6, ND6	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] flavoprotein 1 (EC 1.6.5.3) (EC 1.6.99.3)	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] flavoprotein 2 (EC 1.6.5.3) (EC 1.6.99.3)	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 1 (EC 1.6.5.3) (EC 1.6.99.3)	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.5.3) (EC 1.6.99.3)	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 (EC 1.6.5.3) (EC 1.6.99.3)	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 (EC 1.6.5.3) (EC 1.6.99.3)	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 (EC 1.6.5.3) (EC 1.6.99.3)	Respiratory_complex_I_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
Plastidial ATP synthase alpha chain (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial ATP synthase beta chain (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial ATP synthase gamma chain	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial ATP synthase delta chain	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial ATP synthase epsilon chain	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial ATP synthase F0 sector subunit a	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial ATP synthase F0 sector subunit b	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
ATP synthase F0 sector subunit b' (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Plastidial ATP synthase F0 sector subunit c	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
ATP synthase protein I	F0F1-type_ATP_synthase_in_plants_(plastidial)	Respiration	Plastidial (cyanobacterial) electron transport system
Succinate dehydrogenase (ubiquinone) flavoprotein subunit SDH1/SDHA (EC 1.3.5.1)	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Succinate dehydrogenase (ubiquinone) iron-sulfur subunit SDH2/SDHB (EC 1.3.5.1)	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Succinate dehydrogenase (ubiquinone) cytochrome b560 subunit SDH3/SDHC	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Succinate dehydrogenase (ubiquinone) membrane anchor subunit SDH4/SDHD	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH5	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH6	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH7	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH8	Respiratory_complex_II_(succinate_dehydrogenase)_in_plants	Respiration	Mitochondrial electron transport system in plants
Alternative oxidase, ubiquinol oxidase (EC 1.10.3.11)	Quinol_oxidases_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
Mitochondrial uncoupling protein	Quinol_oxidases_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
Mitochondrial dicarboxylate carrier	Quinol_oxidases_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase alpha chain (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase beta chain (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase gamma chain (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase delta' chain (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase epsilon chain (EC 3.6.3.14)	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase OSCP chain (oligomycin sensitivity conferral protein)	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase F0 sector subunit a	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase F0 sector subunit b	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase F0 sector subunit c	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase F0 sector subunit d	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
ATP synthase F0 sector subunit g	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
Probable ATP synthase 24 kDa subunit FAd, mitochondrial	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
Probable ATP synthase protein MI25, mitochondrial	F0F1-type_ATP_synthase_in_plants_(mitochondrial)	Respiration	Mitochondrial electron transport system in plants
Phenylalanine ammonia-lyase (EC 4.3.1.24)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
5-O-(4-coumaroyl)-D-quinate/shikimate 3'-hydroxylase (EC 1.14.13.36)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
4-coumarate--CoA ligase (EC 6.2.1.12)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Shikimate O-hydroxycinnamoyltransferase (EC 2.3.1.133)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Cinnamoyl-CoA reductase (EC 1.2.1.44)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Cinnamyl alcohol dehydrogenase/reductase (EC 1.1.1.195)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Coniferyl-aldehyde dehydrogenase (EC 1.2.1.68)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Chalcone synthase (EC 2.3.1.74)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Flavonoid 3'-monooxygenase (EC 1.14.13.21)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
p-coumaraldehyde-5-hydroxylase (EC 1.14.-.-)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Extradiol ring-cleavage dioxygenase [caffealdehyde, other] (EC 1.13.-.-)	Phenylpropanoids_general_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
UDP-glucose:sinapate glucosyltransferase (EC 2.4.1.120)	Sinapate_ester_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Sinapoylglucose--choline O-sinapoyltransferase (EC 2.3.1.91)	Sinapate_ester_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Sinapoylglucose--malate O-sinapoyltransferase (EC 2.3.1.92)	Sinapate_ester_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Sinapoylglucose--anthocyanin sinapoyltransferase (EC 2.3.1.-)	Sinapate_ester_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Sinapoylglucose--sinapoylglucose O-sinapoyltransferase (EC 2.3.1.103)	Sinapate_ester_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Homo, di, tri, tetra, penta & hexahomomethionine N-hydroxylase (EC 1.14.13.n5)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Penta and hexahomomethionine N-hydroxylase (EC 1.14.13.n6)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Oxime metabolizining monooxygenase in aliphatic glucosinolates biosynthesis	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Gamma-glutamyl peptidase in glucosinolates biosynthesis	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Glutathione S-transferase in aliphatic glucosinolates biosynthesis, predicted	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
S-alkyl-thiohydroximate lyase (EC 4.4.1.-)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
N-hydroxythioamide S-beta-glucosyltransferase (EC 2.4.1.195) in aliphatic glucosinolates biosynthesis	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Desulfoglucosinolate sulfotransferase (EC 2.8.2.-)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Flavin-containing glucosinolate S-oxygenase (no EC)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Aliphatic glucosinolate 2-oxoglutarate-dependent dioxygenase (hydroxylation) (no EC)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Aliphatic glucosinolate 2-oxoglutarate-dependent dioxygenase (no EC)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
3-butenylglucosinolate 2-hydroxylase (no EC)	Biosynthesis_of_aliphatic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Methionine--oxo-acid aminotransferase (EC 2.6.1.88)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
Methylthioalkylmalate synthase (EC 2.3.3.-)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
Methylthioalkylmalate isomerase large subunit (EC 5.4.4.-)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
Methylthioalkylmalate isomerase small subunit (EC 5.4.4.-)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
Methylthioalkylmalate dehydrogenase (EC 1.1.1.-)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
2-oxo-5-methylthiopentanoate transaminase (EC 2.6.1.-)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
Transporter for biosynthetic intermediates of methionine-derived glucosinolates	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Homomethionine_biosynthesis_and_methionine_chain_elongation_pathway_for_glucosinolates_in_plants	Secondary Metabolism	Plant Glucosinolates
Phenylalanine N-monooxygenase (EC 1.14.13.124)	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Tryptophan N-monooxygenase (EC 1.14.13.125)	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Oxime metabolizining monooxygenase in Trp, Phe, Tyr-derived glucosinolates biosynthesis	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Glutathione S-transferase in Trp, Phe, Tyr-derived glucosinolates biosynthesis, predicted	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Gamma-glutamyl peptidase in glucosinolates biosynthesis	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
S-alkyl-thiohydroximate lyase (EC 4.4.1.-)	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
N-hydroxythioamide S-beta-glucosyltransferase (EC 2.4.1.195) in Trp, Phe, Tyr-derived glucosinolates biosynthesis	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Desulfoglucosinolate sulfotransferase (EC 2.8.2.-)	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Monooxygenase, catalyses 4-hydroxylation of indolyl-3-methyl glucosinolate (I3M) to 4OH-I3M	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Monooxygenase, catalyses 1-hydroxylation of indolyl-3-methyl glucosinolate (I3M) to 1OH-I3M	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Indole glucosinolate methyltransferase	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Indole glucosinolate glucohydrolase (myrosinase)	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
Indole-3-acetaldoxime N-hydroxylase (auxin pathway)	Biosynthesis_of_benzenic_and_indolic_glucosinolates_in_plants_(core_structure_and_secondary_modifications)	Secondary Metabolism	Plant Glucosinolates
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate diphosphatase (EC 3.6.1.n4)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminodeoxychorismate lyase (EC 4.1.3.38)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate synthase (EC 6.3.2.12)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folylpolyglutamate synthase (EC 6.3.2.17)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate reductase (EC 1.5.1.3)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidylate synthase (EC 2.1.1.45)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Gamma-glutamyl hydrolase (EC 3.4.19.9)	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
UDP-glucose:p-aminobenzoate glucosyltransferase	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Plastid folate carrier	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate carrier, cyanobacterial type	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Vacuolar folate monoglutamate carrier	Folate_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)	Flavanones_and_dihydroflavonols_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
4-coumarate--CoA ligase (EC 6.2.1.12)	Flavanones_and_dihydroflavonols_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Chalcone synthase (EC 2.3.1.74)	Flavanones_and_dihydroflavonols_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Chalcone--flavonone isomerase (EC 5.5.1.6)	Flavanones_and_dihydroflavonols_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Flavanone-3-hydroxylase (EC 1.14.11.9)	Flavanones_and_dihydroflavonols_biosynthesis_in_plants	Secondary Metabolism	Biosynthesis of phenylpropanoids
Serine acetyltransferase (EC 2.3.1.30)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase (EC 2.5.1.47)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine kinase (EC 2.7.1.39)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-synthase, O-phospho-L-homoserine dependent (EC 2.5.1.-)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-lyase (EC 4.4.1.8)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homocysteine S-methyltransferase (EC 2.1.1.10)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine S-methyltransferase (EC 2.1.1.12)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methylthioribose kinase (EC 2.7.1.100)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine--oxo-acid aminotransferase (EC 2.6.1.88)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Tyrosine aminotransferase (EC 2.6.1.5)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylmethionine synthetase (EC 2.5.1.6)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Adenosylhomocysteinase (EC 3.3.1.1)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
1-aminocyclopropane-1-carboxylate synthase (EC 4.4.1.14)	Methionine_and_cysteine_metabolism_in_plants	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Polyunsaturated_fatty_acids_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
Omega-6 fatty acid desaturase (EC 1.14.19.-)	Polyunsaturated_fatty_acids_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	
Oleoyl-[acyl carrier protein] thioesterase (EC 3.1.2.14)	Unsaturated_Fatty_Acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Probable acyl-ACP desaturase, Palmitoyl-ACP 9-desaturase (EC 1.14.19.-)	Unsaturated_Fatty_Acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Unsaturated_Fatty_Acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	Unsaturated_Fatty_Acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	Unsaturated_Fatty_Acid_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Free fatty acids epoxidase [oleate, linoleate, linolenate] (no EC)	Poly-hydroxy_fatty_acids_metabolism_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type	Cyclopropane_and_cyclopropene_fatty_acids_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069	Cyclopropane_and_cyclopropene_fatty_acids_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
COG2907: Amine oxidase, flavin-containing	Cyclopropane_and_cyclopropene_fatty_acids_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Hypothetical protein COG3496	Cyclopropane_and_cyclopropene_fatty_acids_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
FIG005069: Hypothetical protein	Cyclopropane_and_cyclopropene_fatty_acids_biosynthesis_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
outer membrane protein, MtrB	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
periplasmic decaheme cytochrome c, MtrA	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
surface localized decaheme cytochrome c lipoprotein, MtrC	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
surface localized decaheme cytochrome c lipoprotein, OmcA	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
surface localized undecaheme cytochrome c lipoprotein, UndB	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
surface localized decaheme cytochrome c lipoprotein, MtrH	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
surface localized decaheme cytochrome c lipoprotein, MtrF	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
outer membrane protein, MtrE	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
periplasmic decaheme cytochrome c, MtrD	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
surface localized undecaheme cytochrome c lipoprotein, UndA	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
surface localized decaheme cytochrome c lipoprotein, MtrG	Fe(III)_respiration_-_Shewanella_type	Respiration	Electron accepting reactions
Protein of unknown function DUF1446	At1g01770	Predictions based on plant-prokaryote comparative analysis	
Small uncharacterized protein Bpro_4170	At1g01770	Predictions based on plant-prokaryote comparative analysis	
Uncharacterized transporter, similarity to citrate transporter	At1g01770	Predictions based on plant-prokaryote comparative analysis	
3-hydroxy-3isohexenylglutaryl-CoA:acetate lyase	At1g01770	Predictions based on plant-prokaryote comparative analysis	
Geranyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.5)	At1g01770	Predictions based on plant-prokaryote comparative analysis	
Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5)	At1g01770	Predictions based on plant-prokaryote comparative analysis	
Putative extracytoplasmic tricarboxylate-binding receptor of a tripartite transporter, in cluster with DUF1446	At1g01770	Predictions based on plant-prokaryote comparative analysis	
Ribonuclease P protein component (EC 3.1.26.5)	At1g14345	Predictions based on plant-prokaryote comparative analysis	
RNA-binding protein Jag	At1g14345	Predictions based on plant-prokaryote comparative analysis	
LSU ribosomal protein L34p	At1g14345	Predictions based on plant-prokaryote comparative analysis	
Inner membrane protein translocase component YidC, short form OxaI-like	At1g14345	Predictions based on plant-prokaryote comparative analysis	
FIG137771: hypothetical protein	At1g14345	Predictions based on plant-prokaryote comparative analysis	
FIG052964: hypothetical protein	At1g14345	Predictions based on plant-prokaryote comparative analysis	
ATPase of the AAA+ family protein associated with FIG137771 hypothetical protein	At1g14345	Predictions based on plant-prokaryote comparative analysis	
FIG057954: metal-binding, possibly nucleic acid-binding protein	At1g14345	Predictions based on plant-prokaryote comparative analysis	
RNA recognition motif (RRM)-containing protein AT1G14340	At1g14345	Predictions based on plant-prokaryote comparative analysis	
Inner membrane protein translocase of the Oxa1/YidC/Alb3 family	At1g14345	Predictions based on plant-prokaryote comparative analysis	
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	At1g24340	Predictions based on plant-prokaryote comparative analysis	
FAD-binding monooxygenase, PheA/TfdB family, similarity to 2,4-dichlorophenol 6-monooxygenase	At1g24340	Predictions based on plant-prokaryote comparative analysis	
Catechol 1,2-dioxygenase (EC 1.13.11.1)	At1g24340	Predictions based on plant-prokaryote comparative analysis	
Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family)	At1g24340	Predictions based on plant-prokaryote comparative analysis	
FAD-binding monooxygenase, PheA/TfdB family	At1g24340	Predictions based on plant-prokaryote comparative analysis	
Polyketide beta-ketoacyl synthase WhiE-KS paralog	At1g24340	Predictions based on plant-prokaryote comparative analysis	
Catechol 1,2-dioxygenase 1 (EC 1.13.11.1)	At1g24340	Predictions based on plant-prokaryote comparative analysis	
Maleylacetate reductase (EC 1.3.1.32)	At1g24340	Predictions based on plant-prokaryote comparative analysis	
2,4-dichlorophenol 6-monooxygenase (EC 1.14.13.20)	At1g24340	Predictions based on plant-prokaryote comparative analysis	
Chlorocatechol 1,2-dioxygenase	At1g24340	Predictions based on plant-prokaryote comparative analysis	
Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Cell surface receptor IsdB for hemoglobin and hemoglobin-haptoglobin complexes	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC type transporter HtsABC, heme-binding protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC type transporter HtsABC, permease protein HtsB	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC type transporter HtsABC, permease protein HtsC	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme efflux system ATPase HrtA	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme efflux system permease HrtB	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme transporter IsdDEF, lipoprotein IsdE	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme transporter IsdDEF, membrane component IsdD	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme transporter IsdDEF, permease component IsdF	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme-degrading cytoplasmic oxygenase IsdG	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme-degrading cytoplasmic oxygenase IsdI	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
FIG039061: hypothetical protein related to heme utilization	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter ATP-binding protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter permease protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter substrate-binding protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
LPXTG specific sortase A	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Metallo-beta-lactamase superfamily domain protein in prophage	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
NPQTN cell wall anchored protein IsdC	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
NPQTN specific sortase B	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Sensor histidine kinase colocalized with HrtAB transporter	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Two-component response regulator SA14-24	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Two-component response regulator colocalized with HrtAB transporter	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Two-component sensor kinase SA14-24	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Uncharacterized siderophore biosynthesis protein near heme transporter HtsABC	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Zn-dependent hydrolase (beta-lactamase superfamily)	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Cell surface receptor IsdH for hemoglobin-haptoglobin complexes	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Sortase A, LPXTG specific	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Acyl carrier protein associated with anthrachelin biosynthesis	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Antibiotic biosynthesis monooxygenase domain-containing protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Cell surface protein IsdA1	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme transporter analogous to IsdDEF, ATP-binding protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hypothetical protein GBAA1985 associated with anthrachelin biosynthesis, unique	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hypothetical protein GBAA1986 associated with anthrachelin biosynthesis, isomerase-like TIM barrel domain	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Long-chain-fatty-acid--CoA ligase associated with anthrachelin biosynthesis	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter ATP-binding protein PiuD	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter permease protein PiuB	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter permease protein PiuC	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter substrate-binding protein PiuA	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter ATP-binding protein PiaD	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter permease protein PiaB	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter permease protein PiaC	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron compound ABC uptake transporter substrate-binding protein PiaA	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Cell surface protein Shp, transfers heme from hemoglobin to apo-SiaA/HtsA	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC transporter (Streptococcus), ATP-binding protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC transporter (Streptococcus), heme and hemoglobin-binding protein SiaA/HtsA	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC transporter (Streptococcus), permease protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Putative ABC transporter (ATP-binding protein), spy1791 homolog	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Putative ABC transporter ATP-binding protein, spy1790 homolog	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Streptococcal cell surface hemoprotein receptor Shr	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Uncharacterized iron compound ABC uptake transporter, ATP-binding protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Uncharacterized iron compound ABC uptake transporter, permease protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Uncharacterized iron compound ABC uptake transporter, substrate-binding protein	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hemin transport protein HmuS	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme oxygenase HemO, associated with heme uptake	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hypothetical, distant similarity with heme-degrading oxygenase IsdG	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Similar to hypothetical protein DUF454	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme oxygenase (EC 1.14.99.3)	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC transporter, ATPase component HmuV	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC transporter, cell surface heme and hemoprotein receptor HmuT	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Heme ABC transporter, permease protein HmuU	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hemoglobin, heme-dependent two component system response regulator ChrA	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hemoglobin, heme-dependent two component system sensory histidine kinase ChrS	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hemoglobin-dependent two component system response regulator HrrA	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hemoglobin-dependent two component system, sensory histidine kinase HrrS	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Iron-dependent repressor IdeR/DtxR	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Hypothetical similar to CcmC, putative heme lyase for CcmE	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Putative siderophore biosynthesis protein GBAA1981	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Putative siderophore biosynthesis protein GBAA1982	Heme,_hemin_uptake_and_utilization_systems_in_GramPositives	Iron acquisition and metabolism	
Virulence-associated cell-wall-anchored protein SasH (LPXTG motif)	Hypothetical_DUF454	Experimental Subsystems	
Phosphoesterase, DHH family protein	Hypothetical_DUF454	Experimental Subsystems	
LSU ribosomal protein L9p	Hypothetical_DUF454	Experimental Subsystems	
Adenylosuccinate synthetase (EC 6.3.4.4)	Hypothetical_DUF454	Experimental Subsystems	
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]	Hypothetical_DUF454	Experimental Subsystems	
hypothetical protein SA_21	Hypothetical_DUF454	Experimental Subsystems	
FIG011501: YycH protein	Hypothetical_DUF454	Experimental Subsystems	
Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)	Hypothetical_DUF454	Experimental Subsystems	
LSU m3Psi1915 methyltransferase RlmH	Hypothetical_DUF454	Experimental Subsystems	
Zn-dependent hydrolase (beta-lactamase superfamily)	Hypothetical_DUF454	Experimental Subsystems	
Two-component sensor kinase SA14-24	Hypothetical_DUF454	Experimental Subsystems	
Two-component response regulator SA14-24	Hypothetical_DUF454	Experimental Subsystems	
Chromosome partition protein smc	Hypothetical_DUF454	Experimental Subsystems	
FIG039061: hypothetical protein related to heme utilization	Hypothetical_DUF454	Experimental Subsystems	
Heme-degrading cytoplasmic oxygenase IsdI	Hypothetical_DUF454	Experimental Subsystems	
Metallo-beta-lactamase superfamily domain protein in prophage	Hypothetical_DUF454	Experimental Subsystems	
ATPase involved in DNA repair, phage associated	Hypothetical_DUF454	Experimental Subsystems	
Recombinational DNA repair protein RecT (prophage associated)	Hypothetical_DUF454	Experimental Subsystems	
Single-stranded DNA-binding protein, phage associated	Hypothetical_DUF454	Experimental Subsystems	
Distant homolog of hypothetical protein SA_21	Hypothetical_DUF454	Experimental Subsystems	
Similar to hypothetical protein DUF454	Hypothetical_DUF454	Experimental Subsystems	
Heme oxygenase HemO, associated with heme uptake	Hypothetical_DUF454	Experimental Subsystems	
Hypothetical, distant similarity with heme-degrading oxygenase IsdG	Hypothetical_DUF454	Experimental Subsystems	
Probable acyl-ACP desaturase, Stearoyl-ACP desaturase (EC 1.14.19.2)	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
3-oxoacyl-[ACP] synthase III in alkane synthesis cluster	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
Haloalkane dehalogenase-like protein	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
AMP-dependent synthetase/ligase in alkane synthesis cluster	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
4'-phosphopantetheinyl transferase (EC 2.7.8.-), inferred for PFA pathway	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
Haloalkane dehalogenase-like protein, At1g52510/AT4G12830 homolog	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
omega-3 polyunsaturated fatty acid synthase module PfaB/C	Head-to-head_olefinic_hydrocarbon_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	
Thiol peroxidase, Bcp-type (EC 1.11.1.15)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Alkyl hydroperoxide reductase subunit C-like protein	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Alkylhydroperoxidase protein D	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Hydrogen peroxide-inducible genes activator	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Ribulose bisphosphate carboxylase (EC 4.1.1.39)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Citrate lyase, subunit 1 (2.3.3.8)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Citrate lyase, subunit 2 (EC 2.3.3.8)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
ATP-citrate (pro-S-) -lyase (EC 2.3.3.8)	At1g21350	Predictions based on plant-prokaryote comparative analysis	
Hypothetical protein, contains HAS barrel docking domain and DUF87 domain	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Protein-export membrane protein SecF (TC 3.A.5.1.1)	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Acetyltransferase (GNAT) family, Syn7942_2240 homolog	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
N-acetyltransferase (GNAT) family, Syn7942_0773 homolog, Ycf52 protein	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Protein-export membrane protein SecD (TC 3.A.5.1.1)	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Possible alpha/beta hydrolase superfamily, slr1916 homolog	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Tyrosine recombinase XerC	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Site-specific recombinase XerD	At1g26220_At1g32070	Predictions based on plant-prokaryote comparative analysis	
Pheophorbide a oxygenase (EC 1.14.12.20)	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Geranylgeranyl diphosphate reductase (EC 1.3.1.83)	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Chlorophyll a(b) binding protein, photosystem II CP43 protein (PsbC) homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Phycobilisome core component	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Anti-sigma regulatory factor (Ser/Thr protein kinase), essential for photomixotrophic growth, PmgA	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
photosystem II protein D2 (PsbD)	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, slr1827 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Phospholipase/carboxylesterase family protein, sll1284 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, slr1235 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, slr1917 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, slr1916 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Hydrolase alpha/beta fold family, slr0264 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Lipase (EC 3.1.1.3) family protein, sll1969 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, sll1129 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Hypothetical protein, slr1506/slr1944 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, sll0553 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Esterase/lipase/thioesterase, slr0421 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
prolyl oligopeptidase family protein	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
hypothetical protein slr1932	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Similar to non-heme chloroperoxidase	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Similar to non-heme chloroperoxidase, sll5080 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Esterase/lipase, sll0644 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Serine peptidase (Alpha/beta hydrolase superfamily) fused to N- terminal uncharacterized domain specific to cyanobacteria	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Esterase/lipase/thioesterase family, pmt2269 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, tll2163 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Lysophospholipase L2 (EC 3.1.1.5)	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Possible alpha/beta hydrolase superfamily, ct0524 homolog	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Esterase D (EC 3.1.1.1)	Synechocystis_experimental	Miscellaneous	Plant-Prokaryote comparative genomics
Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Mg-protoporphyrin IX monomethyl ester oxidative cyclase (anaerobic) (EC 1.14.13.81)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical with similarity to BchE, but NOT Mg-protoporphyrin monomethyl ester cyclase (anaerobic)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Divinyl (proto)chlorophyllide a 8-vinyl-reductase (EC 1.3.1.75), cyanobacterial type	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative chaperon-like protein Ycf39 for quinone binding in Photosystem II	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-dependent protochlorophyllide reductase (EC 1.3.1.33)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Chlorophyll a synthase ChlG (EC 2.5.1.62)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Geranylgeranyl diphosphate reductase (EC 1.3.1.83)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Chlorophyllide a oxygenase (EC 1.14.13.122)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Divinyl (proto)chlorophyllide a 8-vinyl-reductase (EC 1.3.1.75)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protein BchJ, involved in reduction of C-8 vinyl of divinyl protochlorophyllide	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Chlorophyllide reductase subunit BchX (EC 1.18.-.-)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Chlorophyllide reductase subunit BchY (EC 1.18.-.-)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase BchC	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Bacteriochlorophyllide c C8 methyltransefase BchQ	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Bacteriochlorophyllide c C12 methyltransefase BchR	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Chlorophyll b reductase (EC 1.1.1.294)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
7-hydroxymethyl chlorophyll a reductase (EC 1.17.7.2)	Chlorophyll_Biosynthesis_in_plants_and_prokaryotes	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Peptide chain release factor 1	At2g23840	Predictions based on plant-prokaryote comparative analysis	
DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	At2g23840	Predictions based on plant-prokaryote comparative analysis	
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	At2g23840	Predictions based on plant-prokaryote comparative analysis	
DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	At2g23840	Predictions based on plant-prokaryote comparative analysis	
HNH endonuclease family protein	At2g23840	Predictions based on plant-prokaryote comparative analysis	
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	At2g23840	Predictions based on plant-prokaryote comparative analysis	
glutamyl-Q-tRNA synthetase	At2g23840	Predictions based on plant-prokaryote comparative analysis	
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation	At2g23840	Predictions based on plant-prokaryote comparative analysis	
Probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	At2g23840	Predictions based on plant-prokaryote comparative analysis	
Phospholipase/carboxylesterase family protein (EC 3.1.-.-)	At2g23840	Predictions based on plant-prokaryote comparative analysis	
Phytoene/squalene synthetase-like protein	At2g23840	Predictions based on plant-prokaryote comparative analysis	
DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), chloroplast	At2g23840	Predictions based on plant-prokaryote comparative analysis	
RNA methyltransferase, TrmA family	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Diacylglycerol kinase, Bacillus type (EC 2.7.1.107)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35)	At3g21300	Predictions based on plant-prokaryote comparative analysis	
Glutathione S-transferase (EC 2.5.1.18)	At3g50560	Predictions based on plant-prokaryote comparative analysis	
Gamma-glutamyltranspeptidase (EC 2.3.2.2)	At3g50560	Predictions based on plant-prokaryote comparative analysis	
Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein	At3g50560	Predictions based on plant-prokaryote comparative analysis	
2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent	At3g50560	Predictions based on plant-prokaryote comparative analysis	
Glutathione S-transferase family protein	At3g50560	Predictions based on plant-prokaryote comparative analysis	
2-hydroxychromene-2-carboxylate isomerase	At3g50560	Predictions based on plant-prokaryote comparative analysis	
Hypothetical protein in cluster with At3g50560-like gene family	At3g50560	Predictions based on plant-prokaryote comparative analysis	
Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent	At3g50560	Predictions based on plant-prokaryote comparative analysis	
Glutaredoxin family protein, specific to plants	At3g50560	Predictions based on plant-prokaryote comparative analysis	
GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
FIG145533: Methyltransferase (EC 2.1.1.-)	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Hydrolase (HAD superfamily), YqeK	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
FIG001553: Hydrolase, HAD subfamily IIIA	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
FIG007079: UPF0348 protein family	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
FIG004454: RNA binding protein	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
SSU ribosomal protein S20p	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
DNA polymerase III delta subunit (EC 2.7.7.7)	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Late competence protein ComEC, DNA transport	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Late competence protein ComEB	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Late competence protein ComEA, DNA receptor	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Ribosomal silencing factor RsfA (former Iojap)	At4g10620_At3g57180_At3g47450	Predictions based on plant-prokaryote comparative analysis	
Light dependent period modulator LdpA	At1g33290_At1g73170_At3g10420	Predictions based on plant-prokaryote comparative analysis	
Tryptophan-rich protein DUF2389, Ssr2843 homolog	At1g33290_At1g73170_At3g10420	Predictions based on plant-prokaryote comparative analysis	
Putative regulatory protein, contains AAA+ NTPase domain and putative R3H ssDNA-binding domain	At1g33290_At1g73170_At3g10420	Predictions based on plant-prokaryote comparative analysis	
Chloroflexi-specific hypothetical protein	At1g33290_At1g73170_At3g10420	Predictions based on plant-prokaryote comparative analysis	
Protein BEARSKIN1, regulate root cap maturation	At1g33290_At1g73170_At3g10420	Predictions based on plant-prokaryote comparative analysis	
Clavaminate synthase-like protein At3g21360 (EC 1.-.-.-)	At4g17370	Predictions based on plant-prokaryote comparative analysis	
NADPH-dependent aldo-keto reductase, similarity to GRE3, stress-induced in yeast	At4g17370	Predictions based on plant-prokaryote comparative analysis	
Similarity to Na+/myo-inositol cotransporter	At4g17370	Predictions based on plant-prokaryote comparative analysis	
Oxidoreductase, NAD(P)-dependent, weak similarity to Myo-inositol 2-dehydrogenase	At4g17370	Predictions based on plant-prokaryote comparative analysis	
Aliphatic sulfonate monooxygenase family, FMNH2- or F420-dependent	At4g17370	Predictions based on plant-prokaryote comparative analysis	
FIG092115: Oxidoreductase, aldo/keto reductase family	At4g17370	Predictions based on plant-prokaryote comparative analysis	
Flavin reductase family, FMN-binding	At4g17370	Predictions based on plant-prokaryote comparative analysis	
TRAP-type C4-dicarboxylate transport system, possibly of alkanesulfonates, large permease component	At4g17370	Predictions based on plant-prokaryote comparative analysis	
TRAP-type C4-dicarboxylate transport system, possibly of alkanesulfonates, periplasmic component	At4g17370	Predictions based on plant-prokaryote comparative analysis	
TRAP-type C4-dicarboxylate transport system, possibly of alkanesulfonates, small permease component	At4g17370	Predictions based on plant-prokaryote comparative analysis	
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Heme_and_Siroheme_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	Heme_and_Siroheme_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Heme_and_Siroheme_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Heme_and_Siroheme_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Heme_and_Siroheme_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Heme_and_Siroheme_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase I (EC 4.2.1.10)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate synthase (EC 4.2.3.4)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase I (EC 5.4.99.5)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate synthase (EC 4.2.3.5)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydratase (EC 4.2.1.51)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase I (EC 2.7.1.71)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase III (EC 2.7.1.71)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase II (EC 2.7.1.71)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.2.1.10)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3,7-dideoxy-D-threo-hepto-2, 6-diulosonate synthase (EC 1.4.1.24)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase II (EC 4.2.1.10)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydrogenase (EC 1.3.1.12)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase II (EC 5.4.99.5)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Arogenate dehydrogenase (EC 1.3.1.43)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Periplasmic chorismate mutase I precursor (EC 5.4.99.5)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
4-amino, 4-deoxychorismate mutase (EC 5.4.99.-)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
4-amino, 4-deoxyprephenate dehydrogenase (EC 1.3.1.-)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)	Chorismate_Synthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.2.1.10)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3,7-dideoxy-D-threo-hepto-2, 6-diulosonate synthase (EC 1.4.1.24)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase I (EC 4.2.1.10)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase II (EC 2.7.1.71)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate synthase (EC 4.2.3.5)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
beta-ribofuranosylaminobenzene 5'-phosphate synthase	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
UPF0129 protein MJ1474	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate synthase (EC 4.2.3.4)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase I (EC 2.7.1.71)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
4-hydroxybenzoate synthetase (chorismate lyase)	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
UbiD family decarboxylase, MJ1133 type	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
COG1821 family protein	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
UPF0063 protein MJ0103	MethanopterinAromatic	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate synthase (EC 4.2.3.4)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase I (EC 4.2.1.10)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase I (EC 2.7.1.71)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate synthase (EC 4.2.3.5)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3,7-dideoxy-D-threo-hepto-2, 6-diulosonate synthase (EC 1.4.1.24)	Chorismate_biosynthesis_in_plants	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Dihydrofolate reductase (EC 1.5.1.3)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Thymidylate synthase (EC 2.1.1.45)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Serine hydroxymethyltransferase (EC 2.1.2.1)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Dihydrolipoamide dehydrogenase of glycine cleavage system, L protein (EC 1.8.1.4)	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Glycine cleavage system H protein	Folate-mediated_one-carbon_metabolism_in_plants	Carbohydrates	One-carbon Metabolism
Undecaprenyl diphosphate synthase (EC 2.5.1.31)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Octaprenyl diphosphate synthase (EC 2.5.1.90)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Chlorophyll a synthase ChlG (EC 2.5.1.62)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Geranylgeranyl diphosphate reductase (EC 1.3.1.83)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
COG1836	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Phytol kinase (EC 2.7.1.-)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Isopentenyl phosphate kinase	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Digeranylgeranylglycerophospholipid reductase	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Geranylgeranyl/isoprenyl reductase	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Farnesol kinase (2.7.1.-)	COG1836	Miscellaneous	Plant-Prokaryote comparative genomics
Tyrosine aminotransferase (EC 2.6.1.5)	Plastoquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Plastoquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Solanesyl diphosphate synthase (EC 2.5.1.85)	Plastoquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Homogentisate solanesyltransferase (EC 2.5.-)	Plastoquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methyl-6-solanyl-1,4-benzoquinone methyltransferase, eukaryotic type	Plastoquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methyl-6-phytyl-1,4-benzoquinone methyltransferase, eukaryotic type	Plastoquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
SAM-dependent methyltransferase HI0095 (UbiE paralog)	UbiE_methyltransferase_family	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	UbiE_methyltransferase_family	Experimental Subsystems	
Putative methyltransferase YodH	UbiE_methyltransferase_family	Experimental Subsystems	
SAM-dependent methyltransferase YafE (UbiE paralog)	UbiE_methyltransferase_family	Experimental Subsystems	
SAM-dependent methyltransferase DSY4148 (UbiE paralog)	UbiE_methyltransferase_family	Experimental Subsystems	
SAM-dependent methyltransferase SCO3452 (UbiE paralog)	UbiE_methyltransferase_family	Experimental Subsystems	
Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17)	UbiE_methyltransferase_family	Experimental Subsystems	
2-methyl-6-phytyl-1,4-benzoquinone methyltransferase	UbiE_methyltransferase_family	Experimental Subsystems	
2-methyl-6-solanyl-1,4-benzoquinone methyltransferase	UbiE_methyltransferase_family	Experimental Subsystems	
tRNA (adenine57/58-N1)-methyltransferase (EC 2.1.1.36)	UbiE_methyltransferase_family	Experimental Subsystems	
2-methyl-6-phytyl-1,4-benzoquinone methyltransferase, eukaryotic type	UbiE_methyltransferase_family	Experimental Subsystems	
2-methyl-6-solanyl-1,4-benzoquinone methyltransferase, eukaryotic type	UbiE_methyltransferase_family	Experimental Subsystems	
Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial precursor (EC 2.1.1.-)	UbiE_methyltransferase_family	Experimental Subsystems	
SAM-dependent methyltransferase sll0829 (UbiE paralog)	UbiE_methyltransferase_family	Experimental Subsystems	
S-adenosylmethionine:2-demethylmenaquinone methyltransferase (EC 2.1.-.-)	UbiE_methyltransferase_family	Experimental Subsystems	
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Homogentisate phytyltransferase (EC 2.5.1.n8)	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2,3-dimethyl-6-phytyl-1,4-benzoquinone cyclase	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methyl-6-phytyl-1,4-benzoquinone cyclase	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
gamma-tocopherol methyltransferase (EC 2.1.1.95)	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
delta-tocopherol methyltransferase (EC 2.1.1.95)	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Phytol kinase (EC 2.7.1.-)	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Geranylgeranyl diphosphate reductase (EC 1.3.1.83)	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Homogentisate geranylgeranyltransferase (EC 2.5.1.-)	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinone cyclase	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methyl-6-geranylgeranyl-1,4-benzoquinone cyclase	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methyl-6-phytyl-1,4-benzoquinone methyltransferase	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methyl-6-phytyl-1,4-benzoquinone methyltransferase, eukaryotic type	Tocopherols_and_tocotrienols_(vitamin_E)_in_plants_and_cyanobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate solanesyltransferase (plastoquinone-9 biosynthesis in cyanobacteria)	Plastoquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methyl-6-solanyl-1,4-benzoquinone methyltransferase	Plastoquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Chorismate--pyruvate lyase (EC 4.1.3.40)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis monooxygenase UbiB	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis enzyme COQ7	Ubiquinone_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	CoQ	Experimental Subsystems	
Chorismate--pyruvate lyase (EC 4.1.3.40)	CoQ	Experimental Subsystems	
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	CoQ	Experimental Subsystems	
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	CoQ	Experimental Subsystems	
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	CoQ	Experimental Subsystems	
Ubiquinone biosynthesis monooxygenase UbiB	CoQ	Experimental Subsystems	
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)	CoQ	Experimental Subsystems	
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	CoQ	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	CoQ	Experimental Subsystems	
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	CoQ	Experimental Subsystems	
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes	CoQ	Experimental Subsystems	
NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3)	CoQ	Experimental Subsystems	
3-demethylubiquinol 3-O-methyltransferase (EC 2.1.1.64)	CoQ	Experimental Subsystems	
FIG110192: hypothetical protein	CoQ	Experimental Subsystems	
Solanesyl diphosphate synthase (EC 2.5.1.11)	CoQ	Experimental Subsystems	
UbiD family decarboxylase associated with menaquinone via futalosine	CoQ	Experimental Subsystems	
Ubiquinone biosynthesis monooxygenase COQ6 (EC 1.14.13.-), required for C5-hydroxylation step	CoQ	Experimental Subsystems	
3,4-dihydroxy-5-polyprenylbenzoate methyltransferase (EC 2.1.1.114)	CoQ	Experimental Subsystems	
Ubiquinone biosynthesis enzyme COQ7	CoQ	Experimental Subsystems	
Ubiquinone biosynthesis protein COQ4	CoQ	Experimental Subsystems	
Para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor (EC 2.5.1.-)	CoQ	Experimental Subsystems	
COG3536: Uncharacterized protein conserved in bacteria	CoQ	Experimental Subsystems	
Solanesyl diphosphate synthase (EC 2.5.1.85)	CoQ	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Ubiquinone biosynthesis monooxygenase UbiB	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Chorismate--pyruvate lyase (EC 4.1.3.40)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
FIG110192: hypothetical protein	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
DUF98 family	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor (EC 2.5.1.-)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Ubiquinone biosynthesis monooxygenase COQ6 (EC 1.14.13.-), required for C5-hydroxylation step	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
3,4-dihydroxy-5-polyprenylbenzoate methyltransferase (EC 2.1.1.114)	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Ubiquinone biosynthesis enzyme COQ7	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Ubiquinone biosynthesis protein COQ4	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
COG3536: Uncharacterized protein conserved in bacteria	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Ubiquinone biosynthesis enzyme COQ9	Experimental-Ubiquinone_BiosynthesisVDC	Experimental Subsystems	
Solanesyl diphosphate synthase (EC 2.5.1.85)	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis monooxygenase COQ6 (EC 1.14.13.-), required for C5-hydroxylation step	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3,4-dihydroxy-5-polyprenylbenzoate methyltransferase (EC 2.1.1.114)	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis protein COQ4	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis enzyme COQ8/ABC1	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone-binding protein COQ10, required for Coenzyme Qn delivery	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis enzyme COQ9	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Hexaprenyl pyrophosphate synthetase, catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial precursor (EC 2.1.1.-)	Ubiquinone_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Glutathionylspermidine amidohydrolase (EC 3.5.1.78)	Glutathionylspermidine_and_Trypanothione	Stress Response	Oxidative stress
Glutathionylspermidine synthase (EC 6.3.1.8)	Glutathionylspermidine_and_Trypanothione	Stress Response	Oxidative stress
Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1	Glutathionylspermidine_and_Trypanothione	Stress Response	Oxidative stress
Uncharacterized GST-like protein yghU associated with glutathionylspermidine synthetase/amidase	Glutathionylspermidine_and_Trypanothione	Stress Response	Oxidative stress
Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 2	Glutathionylspermidine_and_Trypanothione	Stress Response	Oxidative stress
Sarcosine oxidase alpha subunit (EC 1.5.3.1)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
Sarcosine oxidase beta subunit (EC 1.5.3.1)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
Sarcosine oxidase delta subunit (EC 1.5.3.1)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
Sarcosine oxidase gamma subunit (EC 1.5.3.1)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
L-serine dehydratase (EC 4.3.1.17)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
N-methyl-L-amino-acid oxidase (EC 1.5.3.2)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
N-methyl-L-tryptophan oxidase (EC 1.5.3.-)	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
Monomeric sarcosine oxidase (EC:1.5.3.1), curated	Sarcosine_temp	Amino Acids and Derivatives	Alanine, serine, and glycine
ATP synthase alpha chain (EC 3.6.3.14)	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase beta chain (EC 3.6.3.14)	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase gamma chain (EC 3.6.3.14)	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase delta chain (EC 3.6.3.14)	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase epsilon chain (EC 3.6.3.14)	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase F0 sector subunit a	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase F0 sector subunit b	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase F0 sector subunit c	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase protein I	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase B' chain (EC 3.6.3.14)	F0F1-type_ATP_synthase	Respiration	ATP synthases
ATP synthase F0 sector subunit b' (EC 3.6.3.14)	F0F1-type_ATP_synthase	Respiration	ATP synthases
DNA polymerase (EC 2.7.7.7), phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage DNA polymerase clamp loader subunit Gp62	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage DNA polymerase clamp loader subunit	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Sliding clamp DNA polymerase accessory protein, phage associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Single stranded DNA-binding protein, phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA helicase (EC 3.6.1.-), phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA helicase, phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage DNA helicase loader	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA primase/helicase, phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA topoisomerase, phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA ligase, phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage ribonuclease H (EC 3.1.26.4)	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage replication initiation protein	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA helicase (EC 3.6.4.12), phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
T7-like phage DNA Polymerase (EC 2.7.7.7)	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
T7-like phage primase/helicase protein	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA primase (EC 2.7.7.-) / DNA helicase (EC 3.6.1.-), phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA polymerase I (EC 2.7.7.7), phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA replication protein, phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Origin specific replication binding factor	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Origin specific replication initiation factor	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA polymerase III alpha subunit (EC 2.7.7.7)	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage DNA replication protein	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage single stranded DNA synthesis	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage replication protein	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage-associated DNA primase (EC 2.7.7.-)	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
RNA-dependent RNA polymerase, phage-associated	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Phage ssDNA binding protein	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
RNA-directed RNA polymerase beta chain (EC 2.7.7.48)	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
DNA transposition protein	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
gp41 replication and recombination DNA helicase	Phage_replication	Experimental Subsystems	Phages, Prophages, Transposable elements
Putative uncharacterized protein STY4523 (Putative uncharacterized protein)	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
corresponds to STY4528 from Accession AL513382: Salmonella typhi CT18	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
corresponds to STY4526 from Accession AL513382: Salmonella typhi CT18	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
corresponds to STY4529 from Accession AL513382: Salmonella typhi CT18	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Chromosome (plasmid) partitioning protein ParA	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
DNA topoisomerase III (EC 5.99.1.2)	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Replicative DNA helicase (DnaB) (EC 3.6.4.12)	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Putative uncharacterized protein STY4534 (Putative uncharacterized protein)	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Integrase regulator R	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Single-stranded DNA-binding protein	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Phage-related protein	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Conserved Hypothetical protein 1 in Putative uncharacterized protein STY4523 (Putative uncharacterized protein) locus	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
Conserved Hypothetical protein 2 in Putative uncharacterized protein STY4523 (Putative uncharacterized protein) locus	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
DNA topoisomerase I (EC 5.99.1.2)	CBSS-205914.5.peg.1403	Clustering-based subsystems	Fage-related, replication
ATP-dependent DNA helicase RecG (EC 3.6.1.-)	DNA-replication	DNA Metabolism	DNA replication
ATP-dependent DNA helicase RecQ	DNA-replication	DNA Metabolism	DNA replication
Chromosomal replication initiator protein DnaA	DNA-replication	DNA Metabolism	DNA replication
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase I (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase II (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III alpha subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III beta subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III chi subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III delta prime subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III delta subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III epsilon subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III psi subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA polymerase III theta subunit (EC 2.7.7.7)	DNA-replication	DNA Metabolism	DNA replication
DNA primase (EC 2.7.7.-)	DNA-replication	DNA Metabolism	DNA replication
DNA repair protein RecN	DNA-replication	DNA Metabolism	DNA replication
DNA replication protein DnaC	DNA-replication	DNA Metabolism	DNA replication
DNA replication terminus site-binding protein	DNA-replication	DNA Metabolism	DNA replication
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)	DNA-replication	DNA Metabolism	DNA replication
Exodeoxyribonuclease V beta chain (EC 3.1.11.5)	DNA-replication	DNA Metabolism	DNA replication
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)	DNA-replication	DNA Metabolism	DNA replication
Helicase PriA essential for oriC/DnaA-independent DNA replication	DNA-replication	DNA Metabolism	DNA replication
Holliday junction DNA helicase RuvA	DNA-replication	DNA Metabolism	DNA replication
Holliday junction DNA helicase RuvB	DNA-replication	DNA Metabolism	DNA replication
Primosomal protein I	DNA-replication	DNA Metabolism	DNA replication
Primosomal replication protein N	DNA-replication	DNA Metabolism	DNA replication
Primosomal replication protein N prime prime	DNA-replication	DNA Metabolism	DNA replication
RecA protein	DNA-replication	DNA Metabolism	DNA replication
Recombination protein RecR	DNA-replication	DNA Metabolism	DNA replication
Replicative DNA helicase (DnaB) (EC 3.6.4.12)	DNA-replication	DNA Metabolism	DNA replication
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	DNA-replication	DNA Metabolism	DNA replication
Transcription-repair coupling factor	DNA-replication	DNA Metabolism	DNA replication
Helicase loader DnaI	DNA-replication	DNA Metabolism	DNA replication
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]	DNA-replication	DNA Metabolism	DNA replication
DNA primase (EC 2.7.7.-), phage-associated	DNA-replication	DNA Metabolism	DNA replication
Arrested fork binding	DNA-replication	DNA Metabolism	DNA replication
DNA primase TraC (EC 2.7.7.-)	DNA-replication	DNA Metabolism	DNA replication
Riboflavin transporter RibN	Riboflavin_transporters	Membrane Transport	
Putative riboflavin transporter RibN homologue	Riboflavin_transporters	Membrane Transport	
Desferrioxamine E biosynthesis protein DesB/DfoA	Siderophore_Desferrioxamine_E	Iron acquisition and metabolism	Siderophores
Desferrioxamine E biosynthesis protein DesA/DfoJ	Siderophore_Desferrioxamine_E	Iron acquisition and metabolism	Siderophores
Desferrioxamine E biosynthesis protein DesC/DfoC	Siderophore_Desferrioxamine_E	Iron acquisition and metabolism	Siderophores
Desferrioxamine E biosynthesis protein DesD/DfoC	Siderophore_Desferrioxamine_E	Iron acquisition and metabolism	Siderophores
Putative Desferrioxamine E transporter	Siderophore_Desferrioxamine_E	Iron acquisition and metabolism	Siderophores
Hypothetical protein associated with desferrioxamine E biosynthesis	Siderophore_Desferrioxamine_E	Iron acquisition and metabolism	Siderophores
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein BA2564	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein BCZK2595	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
5-methylthioribose kinase (EC 2.7.1.100)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
2,3-diketo-5-methylthiopentyl-1-phosphate enolase	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
Aliphatic amidase amiE (EC 3.5.1.4)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein VF1653	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine phosphorylase (EC 2.4.2.28)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
Omega amidase (Nit2 homolog)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
Methionine aminotransferase, PLP-dependent	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase (EC 3.1.3.87)	Omega-amidase	Miscellaneous	Plant-Prokaryote comparative genomics
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	COG3236_-_Riboflavin	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	COG3236_-_Riboflavin	Experimental Subsystems	
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	COG3236_-_Riboflavin	Experimental Subsystems	
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	COG3236_-_Riboflavin	Experimental Subsystems	
Uncharacterized protein COG3236	COG3236_-_Riboflavin	Experimental Subsystems	
2,5-diamino-6-ribitylamino-pyrimidinone 5-phosphate deaminase, fungal (EC 3.5.4.-)	COG3236_-_Riboflavin	Experimental Subsystems	
2,5-diamino-6-ribosylamino-pyrimidinone 5-phosphate reductase, fungal (EC 1.1.1.302)	COG3236_-_Riboflavin	Experimental Subsystems	
FIG039061: hypothetical protein related to heme utilization	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Heme-degrading monooxygenase IsdG (EC 1.14.99.3)	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Heme-degrading monooxygenase IsdI (EC 1.14.99.3)	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Chromosome partition protein smc	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Two-component sensor kinase SA14-24	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Two-component response regulator SA14-24	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Zn-dependent hydrolase YycJ/WalJ, required for cell wall metabolism and coordination of cell division with DNA replication	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Virulence-associated cell-wall-anchored protein SasH (LPXTG motif)	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Phosphoesterase, DHH family protein	FIG039061:_hypothetical_protein_related_to_heme_utilization		
LSU ribosomal protein L9p	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Adenylosuccinate synthetase (EC 6.3.4.4)	FIG039061:_hypothetical_protein_related_to_heme_utilization		
hypothetical protein SA_21	FIG039061:_hypothetical_protein_related_to_heme_utilization		
FIG011501: YycH protein	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)	FIG039061:_hypothetical_protein_related_to_heme_utilization		
LSU m3Psi1915 methyltransferase RlmH	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Metallo-beta-lactamase superfamily domain protein in prophage	FIG039061:_hypothetical_protein_related_to_heme_utilization		
ATPase involved in DNA repair, phage associated	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Recombinational DNA repair protein RecT (prophage associated)	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Single-stranded DNA-binding protein, phage associated	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Phage Holliday junction resolvase	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Distant homolog of hypothetical protein SA_21	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Heme oxygenase HemO, associated with heme uptake	FIG039061:_hypothetical_protein_related_to_heme_utilization		
Escherichia and Shigella lineage-specific protein MbiA/HtgA, modifier of biofilm	HtgA_(MbiA),_a_recently_evolved_orphan_gene_of_Escherichia_coli_and_Shigella,_completely_overlapping_in_antisense_to_YaaW		
Hypothetical protein YaaW (COG4735), modifier of biofilm	HtgA_(MbiA),_a_recently_evolved_orphan_gene_of_Escherichia_coli_and_Shigella,_completely_overlapping_in_antisense_to_YaaW		
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Early_steps_pterin_biosynthesis_Archaea		
Related to Dihydropteroate synthase	Early_steps_pterin_biosynthesis_Archaea		
Thymidylate synthase thyX (EC 2.1.1.-)	Early_steps_pterin_biosynthesis_Archaea		
Serine hydroxymethyltransferase (EC 2.1.2.1)	Early_steps_pterin_biosynthesis_Archaea		
beta-ribofuranosylaminobenzene 5'-phosphate synthase	Early_steps_pterin_biosynthesis_Archaea		
Queuosine biosynthesis QueD, PTPS-I	Early_steps_pterin_biosynthesis_Archaea		
Uncharacterized protein MJ1634	Early_steps_pterin_biosynthesis_Archaea		
Coenzyme F420-0:L-glutamate ligase	Early_steps_pterin_biosynthesis_Archaea		
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	Early_steps_pterin_biosynthesis_Archaea		
Uncharacterized protein MJ0408	Early_steps_pterin_biosynthesis_Archaea		
Dihydropteroate synthase (EC 2.5.1.15)	Early_steps_pterin_biosynthesis_Archaea		
Dihydrofolate synthase (EC 6.3.2.12)	Early_steps_pterin_biosynthesis_Archaea		
Alternative dihydrofolate reductase 2	Early_steps_pterin_biosynthesis_Archaea		
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Early_steps_pterin_biosynthesis_Archaea		
CMP-binding factor	Early_steps_pterin_biosynthesis_Archaea		
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	Early_steps_pterin_biosynthesis_Archaea		
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Early_steps_pterin_biosynthesis_Archaea		
PTPS-V	Early_steps_pterin_biosynthesis_Archaea		
PTPS-VI	Early_steps_pterin_biosynthesis_Archaea		
Dihydrofolate reductase (EC 1.5.1.3)	Early_steps_pterin_biosynthesis_Archaea		
Dihydroneopterin aldolase (EC 4.1.2.25)	Early_steps_pterin_biosynthesis_Archaea		
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Early_steps_pterin_biosynthesis_Archaea		
FolM Alternative dihydrofolate reductase 1	Early_steps_pterin_biosynthesis_Archaea		
sulfur oxidation protein SoxA	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxB	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxX	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxY	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfur oxidation protein SoxZ	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor (EC 1.8.2.-)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Thiol:disulfide interchange protein, thioredoxin family	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfate adenylyltransferase (EC 2.7.7.4)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta	CFE_Sulfur_Oxidation	Sulfur Metabolism	
heterodisulfide reductase, subunit E, putative	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfite dehydrogenase cytochrome subunit SoxD	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Lipocalin-related protein and Bos/Can/Equ allergen	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfur oxidation molybdopterin C protein	CFE_Sulfur_Oxidation	Sulfur Metabolism	
transcriptional regulator SoxR	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Regulatory protein SoxS	CFE_Sulfur_Oxidation	Sulfur Metabolism	
thioredoxin SoxW	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Blr3520 protein homolog, hypothetical protein	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3)	CFE_Sulfur_Oxidation	Sulfur Metabolism	
cytochrome c subunit of flavocytochrome c sulfide dehydrogenase	CFE_Sulfur_Oxidation	Sulfur Metabolism	
SoxH protein, homolog	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Adenylylsulfate reductase membrane anchor	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Sulfite oxidase	CFE_Sulfur_Oxidation	Sulfur Metabolism	
Myo-inositol 2-dehydrogenase (EC 1.1.1.18)	ASA_lgdh	Experimental Subsystems	
Inosose dehydratase (EC 4.2.1.44)	ASA_lgdh	Experimental Subsystems	
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	ASA_lgdh	Experimental Subsystems	
Inositol transport system ATP-binding protein	ASA_lgdh	Experimental Subsystems	
5-keto-2-deoxygluconokinase (EC 2.7.1.92)	ASA_lgdh	Experimental Subsystems	
Inositol transport system sugar-binding protein	ASA_lgdh	Experimental Subsystems	
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	ASA_lgdh	Experimental Subsystems	
Inosose isomerase (EC 5.3.99.-)	ASA_lgdh	Experimental Subsystems	
Sugar phosphate isomerases/epimerases	ASA_lgdh	Experimental Subsystems	
putative sugar phosphate isomerase/epimerase	ASA_lgdh	Experimental Subsystems	
Inositol transport system permease protein	ASA_lgdh	Experimental Subsystems	
Homoserine kinase (EC 2.7.1.39)	Ruegeria_pomeroyi_metabolism	Experimental Subsystems	
Homoserine kinase	Ruegeria_pomeroyi_metabolism	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	Dihydrofolate_reductases	Experimental Subsystems	missing genes
Alternative dihydrofolate reductase 3	Dihydrofolate_reductases	Experimental Subsystems	missing genes
Thymidylate synthase (EC 2.1.1.45)	Dihydrofolate_reductases	Experimental Subsystems	missing genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Dihydrofolate_reductases	Experimental Subsystems	missing genes
Dihydroneopterin aldolase (EC 4.1.2.25)	Dihydrofolate_reductases	Experimental Subsystems	missing genes
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Dihydrofolate_reductases	Experimental Subsystems	missing genes
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	Dihydrofolate_reductases	Experimental Subsystems	missing genes
Thymidylate synthase thyX (EC 2.1.1.-)	Dihydrofolate_reductases	Experimental Subsystems	missing genes
Dihydrofolate reductase (EC 1.5.1.3)	Dihydrofolate_reductases	Experimental Subsystems	missing genes
Large exoproteins involved in heme utilization or adhesion	DUF490	Experimental Subsystems	
Sensory subunit of low CO2-induced protein complex, putative	DUF490	Experimental Subsystems	
Protein of unknown function DUF490	DUF490	Experimental Subsystems	
embryo defective 2410	DUF490	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	vitamins	Experimental Subsystems	
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	vitamins	Experimental Subsystems	
Niacin transporter NiaP	vitamins	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
FolM Alternative dihydrofolate reductase 1	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dihydropteroate synthase (EC 2.5.1.15)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thymidylate synthase (EC 2.1.1.45)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thymidylate synthase thyX (EC 2.1.1.-)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Methionine synthase activation domain (EC 2.1.1.13)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Alternative dihydrofolate reductase 3	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Alternative dihydrofolate reductase 2	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Methylenetetrahydrofolate dehydrogenase [NAD(+)] (EC 1.5.1.15)	Test_-_DHFR	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical acetyltransferases BadL	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Rrf2 family transcriptional regulator BadM	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadD (EC 1.3.99.15)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadE (EC 1.3.99.15)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadF (EC 1.3.99.15)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoyl-CoA reductase subunit BadG (EC 1.3.99.15)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Cyclohexanecarboxylate-CoA ligase AliA (EC 6.2.1.-)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoate anaerobic degradation transcriptional regulator BadR, MarR family	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoate-CoA ligase (EC 6.2.1.25)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
2-ketocyclohexanecarboxyl-CoA hydrolase, BadI	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
4Fe-4S ferredoxin, iron-sulfur binding, BadB	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
HbaR transcriptional regulator, Crp/Fnr family	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoate transport, ATP binding protein, HbaH	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoate transport, ATPase component / Benzoate transport, inner membrane transport component	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoate transport, inner-membrane translocator, HbaF	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoate transport, extracellular ligand-binding receptor, HbaE	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Cyclohex-1-ene-1-carboxyl-CoA hydratase (EC 4.2.1.17)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Acetyl-CoA acetyltransferase	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
transcriptional regulator, Crp/Fnr family	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Alcohol dehydrogenase, BadC (EC 1.1.1.1)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Rrf2 family transcriptional regulator	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Benzoate-CoA ligase (EC 6.2.1.25) @ 4-hydroxybenzoate--CoA ligase (EC 6.2.1.27)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
4-hydroxybenzoyl-CoA reductase, gamma subunit (EC 1.3.99.20)	Anaerobic_Aromatic_Degredation_(benzoate)	Metabolism of Aromatic Compounds	Anaerobic degradation of aromatic compounds
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transketolase, C-terminal section (EC 2.2.1.1)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transaldolase (EC 2.2.1.2)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transketolase (EC 2.2.1.1)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Fructose-6-phosphate phosphoketolase (EC 4.1.2.22)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Phosphogluconate dehydratase (EC 4.2.1.12)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transketolase, N-terminal section (EC 2.2.1.1)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
D-arabino-3-hexulose 6-phosphate formaldehyde-lyase (EC 4.1.2.43)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
6-phospho-3-hexuloisomerase (EC 5.3.1.27)	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, cyanobacterial	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Unknown pentose kinase TM0952	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Putative glucose 6-phosphate dehydrogenase effector OpcA	Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
NAD synthetase (EC 6.3.1.5)	possible_targets	Experimental Subsystems	possible targets
NAD kinase (EC 2.7.1.23)	possible_targets	Experimental Subsystems	possible targets
GTP cyclohydrolase II (EC 3.5.4.25)	possible_targets	Experimental Subsystems	possible targets
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	possible_targets	Experimental Subsystems	possible targets
Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)	possible_targets	Experimental Subsystems	possible targets
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	possible_targets	Experimental Subsystems	possible targets
Dihydrofolate reductase (EC 1.5.1.3)	possible_targets	Experimental Subsystems	possible targets
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	possible_targets	Experimental Subsystems	possible targets
GTP cyclohydrolase I (EC 3.5.4.16) type 1	possible_targets	Experimental Subsystems	possible targets
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	possible_targets	Experimental Subsystems	possible targets
Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17)	possible_targets	Experimental Subsystems	possible targets
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	possible_targets	Experimental Subsystems	possible targets
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	possible_targets	Experimental Subsystems	possible targets
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	possible_targets	Experimental Subsystems	possible targets
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	possible_targets	Experimental Subsystems	possible targets
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	possible_targets	Experimental Subsystems	possible targets
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	possible_targets	Experimental Subsystems	possible targets
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	possible_targets	Experimental Subsystems	possible targets
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	possible_targets	Experimental Subsystems	possible targets
Octaprenyl diphosphate synthase (EC 2.5.1.90)	possible_targets	Experimental Subsystems	possible targets
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	possible_targets	Experimental Subsystems	possible targets
Undecaprenyl diphosphate synthase (EC 2.5.1.31)	possible_targets	Experimental Subsystems	possible targets
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	possible_targets	Experimental Subsystems	possible targets
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	possible_targets	Experimental Subsystems	possible targets
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	possible_targets	Experimental Subsystems	possible targets
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	possible_targets	Experimental Subsystems	possible targets
D-alanine--D-alanine ligase (EC 6.3.2.4)	possible_targets	Experimental Subsystems	possible targets
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	possible_targets	Experimental Subsystems	possible targets
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	possible_targets	Experimental Subsystems	possible targets
Phosphoglycerate kinase (EC 2.7.2.3)	possible_targets	Experimental Subsystems	possible targets
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	possible_targets	Experimental Subsystems	possible targets
Thiamine-monophosphate kinase (EC 2.7.4.16)	possible_targets	Experimental Subsystems	possible targets
Adenylate kinase (EC 2.7.4.3)	possible_targets	Experimental Subsystems	possible targets
Guanylate kinase (EC 2.7.4.8)	possible_targets	Experimental Subsystems	possible targets
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	possible_targets	Experimental Subsystems	possible targets
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	possible_targets	Experimental Subsystems	possible targets
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)	possible_targets	Experimental Subsystems	possible targets
Porphobilinogen deaminase (EC 2.5.1.61)	possible_targets	Experimental Subsystems	possible targets
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)	possible_targets	Experimental Subsystems	possible targets
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	possible_targets	Experimental Subsystems	possible targets
UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54)	possible_targets	Experimental Subsystems	possible targets
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	possible_targets	Experimental Subsystems	possible targets
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	possible_targets	Experimental Subsystems	possible targets
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	possible_targets	Experimental Subsystems	possible targets
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	possible_targets	Experimental Subsystems	possible targets
Dephospho-CoA kinase (EC 2.7.1.24)	possible_targets	Experimental Subsystems	possible targets
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	possible_targets	Experimental Subsystems	possible targets
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	possible_targets	Experimental Subsystems	possible targets
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	possible_targets	Experimental Subsystems	possible targets
Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-)	possible_targets	Experimental Subsystems	possible targets
Biofilm PGA synthesis auxiliary protein PgaD	possible_targets	Experimental Subsystems	possible targets
Biofilm PGA synthesis deacetylase PgaB (EC 3.-)	possible_targets	Experimental Subsystems	possible targets
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	possible_targets	Experimental Subsystems	possible targets
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	possible_targets	Experimental Subsystems	possible targets
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.3.1.98)	possible_targets	Experimental Subsystems	possible targets
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	possible_targets	Experimental Subsystems	possible targets
Major curlin subunit precursor CsgA	possible_targets	Experimental Subsystems	possible targets
Transcriptional regulator CsgD for 2nd curli operon	possible_targets	Experimental Subsystems	possible targets
5'-methylthioadenosine phosphorylase (EC 2.4.2.28)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartate aminotransferase (EC 2.6.1.1)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
5-methylthioribose kinase (EC 2.7.1.100)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
2,3-diketo-5-methylthiopentyl-1-phosphate enolase (EC 5.3.2.5)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Omega amidase, Nit2 homolog (EC 3.5.1.3)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Methionine aminotransferase, PLP-dependent	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein BCZK2595	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase (EC 3.1.3.87)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein VF1653	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Aliphatic amidase AmiE (EC 3.5.1.4)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
Aliphatic amidase amiE (EC 3.5.1.4)	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase related protein BA2564	Omega-amidase_KE	Miscellaneous	Plant-Prokaryote comparative genomics
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	TsaC_PrmC	Experimental Subsystems	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	TsaC_PrmC	Experimental Subsystems	
Peptide chain release factor 1	TsaC_PrmC	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	TsaC_PrmC	Experimental Subsystems	
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	TsaC_PrmC	Experimental Subsystems	
Sua5/YciO/YrdC/YwlC family protein	TsaC_PrmC	Experimental Subsystems	
Citrate lyase beta chain (EC 4.1.3.6)	Test_KE	Experimental Subsystems	
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Test_KE	Experimental Subsystems	
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Test_KE	Experimental Subsystems	
Lysophospholipase (EC 3.1.1.5)	Triacylglycerol_metabolism	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Monoglyceride lipase (EC 3.1.1.23)	Triacylglycerol_metabolism	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Lysophospholipase L2 (EC 3.1.1.5)	Triacylglycerol_metabolism	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Triacylglycerol lipase precursor (EC 3.1.1.3)	Triacylglycerol_metabolism	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Triacylglycerol lipase (EC 3.1.1.3)	Triacylglycerol_metabolism	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Putative lipase in cluster with Phosphatidate cytidylyltransferase	Triacylglycerol_metabolism	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Phospholipase A1 (EC 3.1.1.32) (EC 3.1.1.4)	Triacylglycerol_metabolism	Fatty Acids, Lipids, and Isoprenoids	Triacylglycerols
Acetyl-coenzyme A carboxyl transferase domain of homomeric ACCase (EC 6.4.1.2)	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxyl carrier domain of homomeric Acetyl-CoA carboxylase	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxylase domain of homomeric ACCase (EC 6.3.4.14)	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Acetyl-CoA_carboxylase_complexes_in_plants	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Dethiobiotin synthetase (EC 6.3.3.3)	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthase (EC 2.8.1.6)	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Sucrose-proton symporter SUC5, biotin transporter	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Adrenodoxin, mitochondrial ferredoxin	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Adrenodoxin reductase	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
SAM-dependent methyltransferase, BioC-like	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Seed biotin-binding protein	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Putative pseudogene, Biotin-protein ligase (EC 6.3.4.15)	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Putative pseudogene, Adrenodoxin, mitochondrial ferredoxin	Biotin_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioC	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Pimeloyl-CoA synthase (EC 6.2.1.14)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Dethiobiotin synthetase (EC 6.3.3.3)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthase (EC 2.8.1.6)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Pyruvate carboxylase subunit A (EC 6.4.1.1)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Pyruvate carboxylase subunit B (biotin-containing) (EC 6.4.1.1)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Substrate-specific component BioY of biotin ECF transporter	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin operon repressor	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2); Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
ATPase component BioM of energizing module of biotin ECF transporter	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Transmembrane component BioN of energizing module of biotin ECF transporter	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
predicted biotin regulatory protein BioR (GntR family)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioH	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Predicted biotin repressor from TetR family	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein bioZ	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
biotin biosynthesis cytochrome P450 (EC 1.4.-.-)	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioG	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein bioK	Biotin_synthesis_&_utilization	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
hypothetical protein BH3604	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
Methylglyoxal synthase (EC 4.2.3.3)	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
Biotin operon repressor	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
Pantoate--beta-alanine ligase (EC 6.3.2.1)	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
DinG family ATP-dependent helicase YoaA	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
Lin2022 protein	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
bacteriocin transport accessory protein	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
Lmbe-related protein	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
MazG nucleotide pyrophosphohydrolase	CBSS-280355.3.peg.2835	Clustering-based subsystems	Clustering-based subsystems
Ribosomal silencing factor RsfA (former Iojap)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
FIG004454: RNA binding protein	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
LSU m3Psi1915 methyltransferase RlmH	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
GTP-binding protein Obg	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
LSU ribosomal protein L27p	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
LSU ribosomal protein L21p	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate 5-kinase (EC 2.7.2.11)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Orotate phosphoribosyltransferase (EC 2.4.2.10)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Adenylate cyclase (EC 4.6.1.1)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
tRNA dimethylallyltransferase (EC 2.5.1.75)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Inorganic pyrophosphatase (EC 3.6.1.1)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Nicotinamidase (EC 3.5.1.19)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Hydrolase (HAD superfamily), YqeK	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
GTP-binding protein YqeH, possibly involved in replication initiation	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	IojapClusters	Miscellaneous	Plant-Prokaryote comparative genomics
Serine hydroxymethyltransferase (EC 2.1.2.1)	PROSC_YggS		
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	PROSC_YggS		
Hydrolase (HAD superfamily), YqeK	PROSC_YggS		
GTP-binding protein YqeH, possibly involved in replication initiation	PROSC_YggS		
LSU m3Psi1915 methyltransferase RlmH	PROSC_YggS		
GTP-binding protein Obg	PROSC_YggS		
LSU ribosomal protein L27p	PROSC_YggS		
LSU ribosomal protein L21p	PROSC_YggS		
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	PROSC_YggS		
Orotate phosphoribosyltransferase (EC 2.4.2.10)	PROSC_YggS		
tRNA dimethylallyltransferase (EC 2.5.1.75)	PROSC_YggS		
Inorganic pyrophosphatase (EC 3.6.1.1)	PROSC_YggS		
Nicotinamidase (EC 3.5.1.19)	PROSC_YggS		
FIG018583: protein of unknown function	PROSC_YggS		
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	PROSC_YggS		
Glutamate 5-kinase (EC 2.7.2.11)	PROSC_YggS		
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	PROSC_YggS		
Acetylornithine aminotransferase (EC 2.6.1.11)	PROSC_YggS		
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	PROSC_YggS		
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	PROSC_YggS		
Aspartokinase (EC 2.7.2.4)	PROSC_YggS		
Homoserine dehydrogenase (EC 1.1.1.3)	PROSC_YggS		
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	PROSC_YggS		
Aspartate aminotransferase (EC 2.6.1.1)	PROSC_YggS		
Ribosomal silencing factor RsfA (former Iojap)	PROSC_YggS		
FIG004454: RNA binding protein	PROSC_YggS		
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	PROSC_YggS		
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	PROSC_YggS		
Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	PROSC_YggS		
Ornithine aminotransferase (EC 2.6.1.13)	PROSC_YggS		
Homoserine O-acetyltransferase (EC 2.3.1.31)	PROSC_YggS		
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	PROSC_YggS		
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)	PROSC_YggS		
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	PROSC_YggS		
Adenylate cyclase (EC 4.6.1.1)	PROSC_YggS		
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	PROSC_YggS		
Transcriptional regulator, GntR family / AMINOTRANSFERASE CLASS-I (EC 2.6.1.-)	PROSC_YggS		
Transcriptional regulator, GntR family / Aspartate aminotransferase (EC 2.6.1.1)	PROSC_YggS		
Valine--pyruvate aminotransferase (EC 2.6.1.66)	PROSC_YggS		
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	PROSC_YggS		
Putative membrane protein (Putative integral membran resistance protein)	PROSC_YggS		
Pyridoxal kinase (EC 2.7.1.35)	PROSC_YggS		
Transcriptional regulator with DNA-binding HTH domain and aminotransferase domain (MocR family)	PROSC_YggS		
Ornithine cyclodeaminase (EC 4.3.1.12)	PROSC_YggS		
Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11)	PROSC_YggS		
YGGT family protein	PROSC_YggS		
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter	PROSC_YggS		
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	PROSC_YggS		
Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.-); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	PROSC_YggS		
LL-diaminopimelate aminotransferase, predicted alternative	PROSC_YggS		
Proline racemase (EC 5.1.1.4)	PROSC_YggS		
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	PROSC_YggS		
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
diptheria toxin resistance protein required for diphthamide biosynthesis (Saccharomyces)-like 1	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
D-arabino-3-hexulose 6-phosphate formaldehyde-lyase (EC 4.1.2.43)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase (EC 2.3.1.101)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
L-tyrosine decarboxylase (EC 4.1.1.25)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
COG1821 family protein	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
COG1548 family protein	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
duf556 family protein	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glutamate N-acetyltransferase (EC 2.3.1.35)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ApbE family lipoprotein	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Duf39 methanogenesis marker 16 metalloprotein	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5'-nucleotidase surE (EC 3.1.3.5)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
L-Aspartate dehydrogenase (EC 1.4.1.21)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
[NiFe] hydrogenase nickel incorporation-associated protein HypB	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical protein with distant similarity to Ribonuclease E inhibitor RraA (former MenG)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Selenophosphate synthetase-related protein MJ0640	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Uncharacterized ferredoxin oxidoreductase MJ0100	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Uncharacterized protein MJ0787	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Biotin synthase-related protein in some methanogens	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
M. jannaschii predicted coding region MJ0664	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Valine--pyruvate aminotransferase (EC 2.6.1.66)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
phosphoribosylformylglycinamidine cyclo-ligase isolog (purM)	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
FIG00807954: hypothetical protein	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Possible glutaminyl transferase clustered with tetrahydromethanopterin biosynthesis genes	Methanofuran	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dimethylsulfoniopropionate CoA transferase/lyase DddD, 3-hydroxypropionate generating	Release_of_Dimethyl_Sulfide_(DMS)_from_Dimethylsulfoniopropionate_(DMSP)	Sulfur Metabolism	
Dimethylsulfoniopropionate (DSMP) lyase DddL	Release_of_Dimethyl_Sulfide_(DMS)_from_Dimethylsulfoniopropionate_(DMSP)	Sulfur Metabolism	
Aspartate 1-decarboxylase (EC 4.1.1.11)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate--beta-alanine ligase (EC 6.3.2.1)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase (EC 2.7.1.24)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Ketol-acid reductoisomerase (EC 1.1.1.86)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
2-dehydropantoate 2-reductase (EC 1.1.1.169)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase (EC 2.7.1.33)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Substrate-specific component PanT of predicted pantothenate ECF transporter	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase, type II eukaryotic (EC 2.7.7.3)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate kinase, archaeal (EC 2.7.1.-)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenate synthetase, archaeal	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Acyl carrier protein phosphodiesterase (EC 3.1.4.14)	coA-FolK	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Transcriptional regulator, AraC family, clustered with MMPA degradation genes	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
DMSP demethylase transcriptional regulator	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
Aminotransferase involved in DMSP breakdown	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
DMSP demethylase (DmdA) (EC 2.1.2.10)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA ligase (DmdB)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
3-methylthioacryloyl-CoA hydratase (DmdD)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
3-methylthioacryloyl-CoA hydratase 2 (DmdD2)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
Cysteine desulfurase (EC 2.8.1.7)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
FIG098787: protein involved in DMSP breakdown	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
Transmembrane protein involved in DMSP breakdown	Dimethylsulfoniopropionate_(DMSP)_mineralization,_WBW	Sulfur Metabolism	
Transcriptional regulator, AraC family, clustered with MMPA degradation genes	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
DMSP demethylase transcriptional regulator	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
Aminotransferase involved in DMSP breakdown	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
DMSP demethylase (DmdA) (EC 2.1.2.10)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA ligase (DmdB)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
3-methylthioacryloyl-CoA hydratase (DmdD)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
3-methylthioacryloyl-CoA hydratase 2 (DmdD2)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
Cysteine desulfurase (EC 2.8.1.7)	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
FIG098787: protein involved in DMSP breakdown	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
Transmembrane protein involved in DMSP breakdown	Dimethylsulfoniopropionate_(DMSP)_mineralization,_gjo	Sulfur Metabolism	
Quinone oxidoreductase (EC 1.6.5.5)	Quinone_oxidoreductase_family	Respiration	
Putative oxidoreductase YncB	Quinone_oxidoreductase_family	Respiration	
Putative oxidoreductase SMc00968	Quinone_oxidoreductase_family	Respiration	
Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)	Quinone_oxidoreductase_family	Respiration	
Putative Zn-dependent oxidoreductase PA5234	Quinone_oxidoreductase_family	Respiration	
Putative NADP-dependent oxidoreductase PA1648	Quinone_oxidoreductase_family	Respiration	
Hypothetical zinc-type alcohol dehydrogenase-like protein YdjJ	Quinone_oxidoreductase_family	Respiration	
Putative Zn-dependent oxidoreductase BA2113	Quinone_oxidoreductase_family	Respiration	
NADPH:quinone reductase (Quinone oxidoreductase) (EC 1.6.5.5)	Quinone_oxidoreductase_family	Respiration	
Urease alpha subunit (EC 3.5.1.5)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease beta subunit (EC 3.5.1.5)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease gamma subunit (EC 3.5.1.5)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreD	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreE	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreF	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreG	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Eukaryotic-type low-affinity urea transporter	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
HupE-UreJ family metal transporter	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea channel UreI	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea ABC transporter, urea binding protein	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea ABC transporter, permease protein UrtB	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea ABC transporter, permease protein UrtC	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea ABC transporter, ATPase protein UrtD	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea ABC transporter, ATPase protein UrtE	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase (EC 6.3.4.6)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Allophanate hydrolase (EC 3.5.1.54)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase-related ABC transporter, permease protein	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase-related ABC transporter, ATPase protein	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urea carboxylase-related amino acid permease	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Partial urea carboxylase 2 (EC 6.3.4.6)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Nickel transporter UreH	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Partial urea carboxylase (EC 6.3.4.6)	Urea_decomposition	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
NADH pyrophosphatase (EC 3.6.1.22)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
ADP compounds hydrolase NudE (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
ADP-ribose pyrophosphatase (EC 3.6.1.13)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Thiamin-phosphate pyrophosphorylase-like protein	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Hypothetical nudix hydrolase YeaB	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Putative Nudix hydrolase YfcD (EC 3.6.-.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix-like NDP and NTP phosphohydrolase YmfB	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Low G+C gram positive nudix hydrolase YtkD (EC 3.6.-.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR1776 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
5-methyl-dCTP pyrophosphohydrolase (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
GDP-mannose mannosyl hydrolase (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix hydrolase family protein YffH	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix hydrolase family protein PA3470	Nudix_KE	Nucleosides and Nucleotides	Detoxification
GDP-mannose pyrophosphatase YffH	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Uridine diphosphate glucose pyrophosphatase (EC 3.6.1.45)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0550 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix family (d)NDPase DR0975	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0092 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0149 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0261 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0274 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0329 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0784 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR1025 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR2356 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Pyrimidine deoxynucleoside triphosphate (dYTP) pyrophosphohydrolase YfoO	Nudix_KE	Nucleosides and Nucleotides	Detoxification
ADP-ribose pyrophosphatase, mitochondrial precursor (EC 3.6.1.13)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
dATP pyrophosphohydrolase NudB (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Nudix dNTPase DR0004 (EC 3.6.1.-)	Nudix_KE	Nucleosides and Nucleotides	Detoxification
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	4_4_13	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	4_4_13	Experimental Subsystems	
Ornithine racemase (EC 5.1.1.12)	4_4_13	Experimental Subsystems	
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	4_4_13	Experimental Subsystems	
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	4_4_13	Experimental Subsystems	
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	4_4_13	Experimental Subsystems	
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	4_4_13	Experimental Subsystems	
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)	4_4_13	Experimental Subsystems	
Diaminopimelate decarboxylase (EC 4.1.1.20)	4_4_13	Experimental Subsystems	
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	4_4_13	Experimental Subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	4_4_13	Experimental Subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	4_4_13	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	4_4_13	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	4_4_13	Experimental Subsystems	
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	4_4_13	Experimental Subsystems	
D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72)	4_4_13	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	4_4_13	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	4_4_13	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	4_4_13	Experimental Subsystems	
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	4_4_13	Experimental Subsystems	
Twitching motility protein PilT	4_4_13	Experimental Subsystems	
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	4_4_13	Experimental Subsystems	
COG0762	4_4_13	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	4_4_13	Experimental Subsystems	
Allantoin racemase (EC 5.1.99.3)	4_4_13	Experimental Subsystems	
Predicted transcriptional regulator of pyridoxine metabolism	4_4_13	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	4_4_13	Experimental Subsystems	
Dihydrofolate synthase (EC 6.3.2.12) / Folylpolyglutamate synthase (EC 6.3.2.17)	4_4_13	Experimental Subsystems	
PdxA-like	4_4_13	Experimental Subsystems	
Domain of unknown function DUF1537 / PdxA-like	4_4_13	Experimental Subsystems	
DUF1537 linked to pdxA	4_4_13	Experimental Subsystems	
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	4_4_13	Experimental Subsystems	
aspartate kinase( EC:2.7.2.4 )	4_4_13	Experimental Subsystems	
Alanine transaminase (EC 2.6.1.2) / Glutamate-glyoxylate aminotransferase (EC 2.6.1.4) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)	4_4_13	Experimental Subsystems	
COG3274: Uncharacterized protein conserved in bacteria	4_4_13	Experimental Subsystems	
Hydroxypyruvate isomerase (EC 5.3.1.22)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
DUF1537 ygbK type II	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Nucleoside-diphosphate-sugar epimerases	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Gluconate permease	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Glyoxylate carboligase (EC 4.1.1.47)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
UDP-glucose dehydrogenase (EC 1.1.1.22)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Phosphosugar-binding transcriptional regulator, RpiR family	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Major facilitator family transporter	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
D-malic enzyme (EC 1.1.1.83)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Tartrate dehydrogenase (EC 1.1.1.93)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Tartrate decarboxylase (EC 4.1.1.73)	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
6-phosphogluconate dehydrogenase, NAD-binding	CBSS-502800.3.peg.2785	Clustering-based subsystems	 Tartronate-semialdehyde related area (links to pyridoxine and aldorate metabolism)
Gluconate permease	DUF1537-ygb	Experimental Subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	DUF1537-ygb	Experimental Subsystems	
DUF1537 ygbK type II	DUF1537-ygb	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	DUF1537-ygb	Experimental Subsystems	
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	DUF1537-ygb	Experimental Subsystems	
Hydroxypyruvate isomerase (EC 5.3.1.22)	DUF1537-ygb	Experimental Subsystems	
Nucleoside-diphosphate-sugar epimerases	DUF1537-ygb	Experimental Subsystems	
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	DUF1537-ygb	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, periplasmic component	DUF1537-ygb	Experimental Subsystems	
Alcohol dehydrogenase (EC 1.1.1.1)	DUF1537-ygb	Experimental Subsystems	
Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83)	DUF1537-ygb	Experimental Subsystems	
Domain of unknown function DUF1537, YgbK-like	DUF1537-ygb	Experimental Subsystems	
transcriptional regulator, DeoR family	DUF1537-ygb	Experimental Subsystems	
similar to ribulose-1,5-bisphosphate carboxylase, Type III	DUF1537-ygb	Experimental Subsystems	
Transporter, MFS superfamily	DUF1537-ygb	Experimental Subsystems	
FIG00513511: hypothetical protein	DUF1537-ygb	Experimental Subsystems	
ketose-bisphosphate aldolase class-II family protein	DUF1537-ygb	Experimental Subsystems	
Pyridoxine 4-oxidase (EC 1.1.3.12)	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxamine-pyruvate aminotransferase (EC 2.6.1.30)	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal 4-dehydrogenase (EC 1.1.1.107)	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
4-pyridoxolactonase (EC 3.1.1.27)	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
4-pyridoxic acid dehydrogenase	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
3-hydroxy-2-methylpyridine-4,5-dicarboxylate 4-decarboxylase (EC 4.1.1.51)	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase (EC 1.14.12.4)	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
2-(acetamidomethylene)succinate hydrolase (EC 3.5.1.29)	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Transcriptional regulator, repressor of vitamin B6 degradation pathway	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
DUF1537 ygbK type II	Pyridoxin(Vitamin_B6)_Degradation_Pathway	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Phosphoserine aminotransferase (EC 2.6.1.52)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal kinase (EC 2.7.1.35)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
DUF1537 linked to pdxA	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Predicted transcriptional regulator of pyridoxine metabolism	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
DUF1537 ygbK type II	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Substrate-specific component PdxT of predicted pyridoxine ECF transporter	Pyridoxin_(Vitamin_B6)_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Phosphoserine aminotransferase (EC 2.6.1.52)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal kinase (EC 2.7.1.35)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
DUF1537 linked to pdxA	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
DUF1537 ygbK type II	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
PdxA-like	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Predicted transcriptional regulator of pyridoxine metabolism	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Substrate-specific component PdxT of predicted pyridoxine ECF transporter	Test_Pyridoxin_B6	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cysteine synthase (EC 2.5.1.47)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cysteine synthase B (EC 2.5.1.47)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cystathionine gamma-synthase (EC 2.5.1.48)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Type III PLP	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Threonine dehydratase, catabolic (EC 4.3.1.19)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
RidA	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase) / Maltose regulon modulator	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Uncharacterized PLP-dependent aminotransferase YfdZ	dcernst_RidA_Cysteine_phenotype	Experimental Subsystems	
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
Transketolase (EC 2.2.1.1)	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
Transaldolase (EC 2.2.1.2)	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Pentose_phosphate_pathway_in_plants	Carbohydrates	Central carbohydrate metabolism
ATPase component BioM of energizing module of biotin ECF transporter	ECF_class_transporters	Membrane Transport	
ATPase component CbiO of energizing module of cobalt ECF transporter	ECF_class_transporters	Membrane Transport	
ATPase component NikO of energizing module of nickel ECF transporter	ECF_class_transporters	Membrane Transport	
Additional substrate-specific component CbiN of cobalt ECF transporter	ECF_class_transporters	Membrane Transport	
Additional substrate-specific component NikN of nickel ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component BioY of biotin ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component CbiM of cobalt ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component NikM of nickel ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component BioN of energizing module of biotin ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component CbiQ of energizing module of cobalt ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component NikQ of energizing module of nickel ECF transporter	ECF_class_transporters	Membrane Transport	
ATPase component of general energizing module of ECF transporters	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component CbrT of predicted cobalamin ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component MtsA of methionine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component RibU of riboflavin ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component ThiT of thiamin ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component of general energizing module of ECF transporters	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	ECF_class_transporters	Membrane Transport	
Substrate-specific component TrpP of tryptophan ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	ECF_class_transporters	Membrane Transport	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component BL0693 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component of energizing module of riboflavin ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component BL0695 of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component BL0694 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of riboflavin ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component FolT of folate ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component PanT of predicted pantothenate ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole	ECF_class_transporters	Membrane Transport	
Substrate-specific component NiaX of predicted niacin ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component ThiW of predicted thiazole ECF transporter	ECF_class_transporters	Membrane Transport	
ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
ATPase component STY3233 of energizing module of queuosine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component STY3231 of energizing module of queuosine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component glr2054 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component glr2052 of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component glr2053 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component PdxU of predicted pyridoxine ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component of energizing module of predicted tryptophan ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of predicted tryptophan ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component MTH454 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component MTH452 of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component MTH453 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Candidate substrate-specific domain of ECF transporters in Mycobacteria	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component of energizing module of predicted ECF transporter in Mycobacteria	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of ECF transporters in Mycobacteria	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of ECF transporters in Cyanobacteria	ECF_class_transporters	Membrane Transport	
Substrate-specific component PAM0308 of predicted lipoate ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component SS1136 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component ST1137 of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component SS1135 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component TTE1589 of energizing module of predicted methylthioadenosine ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component TTE1586 of predicted methylthioadenosine ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component TTE1588 of energizing module of predicted methylthioadenosine ECF transporter	ECF_class_transporters	Membrane Transport	
ATPase component of energizing module of predicted pantothenate ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of predicted pantothenate ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component of energizing module of predicted pyridoxine-related ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of predicted pyridoxine-related ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component Kcr_0336 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component Kcr_0335 of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component Kcr_0337 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
ATPase component of energizing module of predicted queuosine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of predicted queuosine-regulated ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component Cce_1530 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Substrate-specific component Cce_1529 of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Transmembrane component Cce_1531 of energizing module of predicted ECF transporter	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component of energizing module of predicted B12-regulated ECF transporter for dimethylbenzimidazole	ECF_class_transporters	Membrane Transport	
Transmembrane component of energizing module of predicted B12-regulated ECF transporter for dimethylbenzimidazole	ECF_class_transporters	Membrane Transport	
Duplicated ATPase component of energizing module of predicted thiazole ECF transporter	ECF_class_transporters	Membrane Transport	
Ribosomal silencing factor RsfA (former Iojap)	Iojap	Regulation and Cell signaling	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Iojap	Regulation and Cell signaling	
FIG004454: RNA binding protein	Iojap	Regulation and Cell signaling	
LSU m3Psi1915 methyltransferase RlmH	Iojap	Regulation and Cell signaling	
GTP-binding protein Obg	Iojap	Regulation and Cell signaling	
LSU ribosomal protein L27p	Iojap	Regulation and Cell signaling	
LSU ribosomal protein L21p	Iojap	Regulation and Cell signaling	
Glutamate 5-kinase (EC 2.7.2.11)	Iojap	Regulation and Cell signaling	
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Iojap	Regulation and Cell signaling	
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	Iojap	Regulation and Cell signaling	
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Iojap	Regulation and Cell signaling	
Orotate phosphoribosyltransferase (EC 2.4.2.10)	Iojap	Regulation and Cell signaling	
Adenylate cyclase (EC 4.6.1.1)	Iojap	Regulation and Cell signaling	
tRNA dimethylallyltransferase (EC 2.5.1.75)	Iojap	Regulation and Cell signaling	
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	Iojap	Regulation and Cell signaling	
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	Iojap	Regulation and Cell signaling	
Inorganic pyrophosphatase (EC 3.6.1.1)	Iojap	Regulation and Cell signaling	
Nicotinamidase (EC 3.5.1.19)	Iojap	Regulation and Cell signaling	
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	Iojap	Regulation and Cell signaling	
Hydrolase (HAD superfamily), YqeK	Iojap	Regulation and Cell signaling	
GTP-binding protein YqeH, possibly involved in replication initiation	Iojap	Regulation and Cell signaling	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	Iojap	Regulation and Cell signaling	
Triose phosphate/phosphate translocator	Characterized_plastid_transporters_in_plants	Membrane Transport	
Glucose-6-phosphate/phosphate translocator	Characterized_plastid_transporters_in_plants	Membrane Transport	
Phosphoenolpyruvate/phosphate translocator	Characterized_plastid_transporters_in_plants	Membrane Transport	
Xylulose 5-phosphate/phosphate translocator	Characterized_plastid_transporters_in_plants	Membrane Transport	
ADP/ATP Translocase, NTT1	Characterized_plastid_transporters_in_plants	Membrane Transport	
Adenine nucleotide transporter AtBT1 (of mitochondrial carrier family)	Characterized_plastid_transporters_in_plants	Membrane Transport	
Plastid folate carrier	Characterized_plastid_transporters_in_plants	Membrane Transport	
Plastidic S-adenosylmethionine carrier (of mitochondrial carrier family)	Characterized_plastid_transporters_in_plants	Membrane Transport	
Thylakoid ATP carrier (ADP/ATP translocase)	Characterized_plastid_transporters_in_plants	Membrane Transport	
NAD and pyridine nucleotides transporter (of mitochondrial carrier family)	Characterized_plastid_transporters_in_plants	Membrane Transport	
2-oxoglutarate/malate translocator	Characterized_plastid_transporters_in_plants	Membrane Transport	
Glutamate/malate translocator	Characterized_plastid_transporters_in_plants	Membrane Transport	
Plastidic maltose exporter	Characterized_plastid_transporters_in_plants	Membrane Transport	
Plastidic glucose translocator (pGlcT)	Characterized_plastid_transporters_in_plants	Membrane Transport	
Transporter for biosynthetic intermediates of methionine-derived glucosinolates	Characterized_plastid_transporters_in_plants	Membrane Transport	
Folate carrier, cyanobacterial type	Characterized_plastid_transporters_in_plants	Membrane Transport	
Plastidic sodium-dependent pyruvate transporter	Characterized_plastid_transporters_in_plants	Membrane Transport	
Glycolate, glycerate transporter PLGG1	Characterized_plastid_transporters_in_plants	Membrane Transport	
ADP-glucose carrier ZmBT1 (of mitochondrial carrier family)	Characterized_plastid_transporters_in_plants	Membrane Transport	
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)	TenI-like_tautomerase	Clustering-based subsystems	
Glutamate N-acetyltransferase (EC 2.3.1.35)	TenI-like_tautomerase	Clustering-based subsystems	
N-acetylglutamate synthase (EC 2.3.1.1)	TenI-like_tautomerase	Clustering-based subsystems	
Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	TenI-like_tautomerase	Clustering-based subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	TenI-like_tautomerase	Clustering-based subsystems	
Thiazole tautomerase TenI (EC 5.3.99.10)	TenI-like_tautomerase	Clustering-based subsystems	
Thiazole tautomerase TenI-like domain	TenI-like_tautomerase	Clustering-based subsystems	
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	TenI-like_tautomerase	Clustering-based subsystems	
Glutathione S-transferase (EC 2.5.1.18)	TenI-like_tautomerase	Clustering-based subsystems	
Glutathione S-transferase	TenI-like_tautomerase	Clustering-based subsystems	
Poly-gamma-glutamate synthase subunit PgsA/CapA (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Poly-gamma-glutamate synthase subunit PgsB/CapB (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Poly-gamma-glutamate synthase subunit PgsC/CapC (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Poly-gamma-glutamate synthase subunit PgsE/CapE (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-), catalyzes PGA release	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Gamma-glutamyltranspeptidase (EC 2.3.2.2)	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate racemase (EC 5.1.1.3)	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Transition state regulatory protein AbrB	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Putative transition state regulator Abh	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Hypothetical protein in predicted poly-gamma-glutamate synthase operon	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Major facilitator superfamily (MFS) transporter in predicted poly-gamma-glutamate synthase operon	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Gamma-glutamyltranspeptidase PgsD/CapD (EC 2.3.2.2), catalyses PGA anchorage to peptidoglycan	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
transcriptional activator AtxA, (pXO1-119)	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Capsule synthesis positive regulator AcpA	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Capsule synthesis positive regulator AcpB	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate synthase	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Proposed lipoate regulatory protein YbeD	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Transmembrane protein MT2276, clustered with lipoate gene	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A, C-terminal 70 percent	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A, N-terminal 30 percent	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate-protein ligase A type 2	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Lipoate synthase, cyanobacterial paralog	Lipoate__transport	Cofactors, Vitamins, Prosthetic Groups, Pigments	Lipoic acid
Poly-gamma-glutamate synthase subunit PgsA/CapA (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Poly-gamma-glutamate synthase subunit PgsB/CapB (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Poly-gamma-glutamate synthase subunit PgsC/CapC (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Poly-gamma-glutamate synthase subunit PgsE/CapE (EC 6.3.2.-)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-), catalyzes PGA release	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Gamma-glutamyltranspeptidase (EC 2.3.2.2)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate racemase (EC 5.1.1.3)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Transition state regulatory protein AbrB	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Putative transition state regulator Abh	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-dependent malic enzyme (EC 1.1.1.38)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NADP-dependent malic enzyme (EC 1.1.1.40)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Malate permease	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Malate-2H(+)/Na(+)-lactate antiporter YqkI/MleN	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Oxaloacetate decarboxylase involved in citrate fermentation (EC 4.1.1.3)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate ammonia-lyase (EC 4.3.1.1)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-asparaginase I, cytoplasmic (EC 3.5.1.1)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-asparaginase (EC 3.5.1.1)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-malate or citrate/H+ symporter CimH (TC 2.A.24.2.4)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Hypothetical protein in predicted poly-gamma-glutamate synthase operon	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Major facilitator superfamily (MFS) transporter in predicted poly-gamma-glutamate synthase operon	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Gamma-glutamyltranspeptidase PgsD/CapD (EC 2.3.2.2), catalyses PGA anchorage to peptidoglycan	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
transcriptional activator AtxA, (pXO1-119)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Capsule synthesis positive regulator AcpA	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Capsule synthesis positive regulator AcpB	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Citrate-sodium symporter (TC 2.A.24.1.1)	Poly-gamma-glutamate_biosynthesis_COPY	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Oxygen_stress_response_/_Human_gut_microbiome		
Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)	Oxygen_stress_response_/_Human_gut_microbiome		
Glutamate--cysteine ligase (EC 6.3.2.2)	Oxygen_stress_response_/_Human_gut_microbiome		
Thioredoxin	Oxygen_stress_response_/_Human_gut_microbiome		
Thioredoxin reductase (EC 1.8.1.9)	Oxygen_stress_response_/_Human_gut_microbiome		
Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)	Oxygen_stress_response_/_Human_gut_microbiome		
Manganese superoxide dismutase (EC 1.15.1.1)	Oxygen_stress_response_/_Human_gut_microbiome		
NADH peroxidase (EC 1.11.1.1)	Oxygen_stress_response_/_Human_gut_microbiome		
Superoxide dismutase [Fe] (EC 1.15.1.1)	Oxygen_stress_response_/_Human_gut_microbiome		
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	Oxygen_stress_response_/_Human_gut_microbiome		
Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)	Oxygen_stress_response_/_Human_gut_microbiome		
Catalase (EC 1.11.1.6)	Oxygen_stress_response_/_Human_gut_microbiome		
Glutathione reductase (EC 1.8.1.7)	Oxygen_stress_response_/_Human_gut_microbiome		
Glutathione synthetase (EC 6.3.2.3)	Oxygen_stress_response_/_Human_gut_microbiome		
Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3)	Oxygen_stress_response_/_Human_gut_microbiome		
Alkylhydroperoxidase protein D	Oxygen_stress_response_/_Human_gut_microbiome		
Fumarylacetoacetate hydrolase family protein	Gentisate_degradation	Metabolism of Aromatic Compounds	
Maleylacetoacetate isomerase (EC 5.2.1.2)	Gentisate_degradation	Metabolism of Aromatic Compounds	
4-hydroxybenzoate transporter	Gentisate_degradation	Metabolism of Aromatic Compounds	
Fumarylacetoacetase (EC 3.7.1.2)	Gentisate_degradation	Metabolism of Aromatic Compounds	
Gentisate 1,2-dioxygenase (EC 1.13.11.4)	Gentisate_degradation	Metabolism of Aromatic Compounds	
Putative n-hydroxybenzoate hydroxylase	Gentisate_degradation	Metabolism of Aromatic Compounds	
Maleate cis-trans isomerase (EC 5.2.1.1)	Gentisate_degradation	Metabolism of Aromatic Compounds	
putative 4-hydroxybenzoyl-CoA thioesterase	Gentisate_degradation	Metabolism of Aromatic Compounds	
Salicylate hydroxylase (EC 1.14.13.1)	Gentisate_degradation	Metabolism of Aromatic Compounds	
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Gentisate_degradation	Metabolism of Aromatic Compounds	
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	Gentisate_degradation	Metabolism of Aromatic Compounds	
Glycerol uptake facilitator protein	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), glycerol fermentation	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Glycerol dehydratase large subunit (EC 4.2.1.30)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Glycerol dehydratase medium subunit (EC 4.2.1.30)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Glycerol dehydratase small subunit (EC 4.2.1.30)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Glycerol dehydratase reactivation factor large subunit	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Glycerol dehydratase reactivation factor small subunit	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
1,3-propanediol dehydrogenase (EC 1.1.1.202)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Glycerol dehydrogenase (EC 1.1.1.6)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), ethanolamine utilization	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), cobalamin synthesis	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), propanediol utilization	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Propanediol dehydratase large subunit (EC 4.2.1.28)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Propanediol dehydratase medium subunit (EC 4.2.1.28)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Propanediol dehydratase small subunit (EC 4.2.1.28)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Propanediol dehydratase reactivation factor large subunit	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Propanediol dehydratase reactivation factor small subunit	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
CoA-acylating propionaldehyde dehydrogenase	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Propanediol diffusion facilitator	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Propanediol utilization protein PduM	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	Glycerol_fermentation_to_1,3-propanediol	Carbohydrates	Sugar alcohols
Glucokinase (EC 2.7.1.2)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase class II (EC 2.7.1.11)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	Glycolysis_test	Carbohydrates	Central carbohydrate metabolism
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Acetylornithine aminotransferase (EC 2.6.1.11)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartate aminotransferase (EC 2.6.1.1)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
3-dehydroquinate synthase (EC 4.2.3.4)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Adenylosuccinate synthetase (EC 6.3.4.4)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Argininosuccinate synthase (EC 6.3.4.5)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Diaminopimelate decarboxylase (EC 4.1.1.20)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Diaminopimelate epimerase (EC 5.1.1.7)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
LL-diaminopimelate aminotransferase, predicted alternative	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Acetylglutamate kinase (EC 2.7.2.8)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Omega amidase, Nit2 homolog (EC 3.5.1.3)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Methionine aminotransferase, PLP-dependent	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)	Omega-amidase_KE2	Miscellaneous	Plant-Prokaryote comparative genomics
Putative antibiotic transport-associated protein	CBSS-196620.1.peg.2477	Clustering-based subsystems	
D-specific D-2-hydroxyacid dehydrogenase ddh homolog (EC 1.1.1.28)	CBSS-196620.1.peg.2477	Clustering-based subsystems	
N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17)	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Maltose O-acetyltransferase (EC 2.3.1.79)	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Ferrous iron transport protein B	CBSS-196620.1.peg.2477	Clustering-based subsystems	
TetR family regulatory protein	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Copper-translocating P-type ATPase (EC 3.6.3.4)	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Hypothetical protein FIG016047	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Hypothetical protein FIG016644	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Copper ion binding protein	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Dehydrosqualene synthase (EC 2.5.1.96)	CBSS-196620.1.peg.2477	Clustering-based subsystems	
Beta-carotene hydroxylase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Beta-carotene ketolase (EC 1.14.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Carotenoid cis-trans isomerase (EC 5.2.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Neurosporene desaturase (EC 1.-.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene desaturase (EC 1.14.99.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene synthase (EC 2.5.1.32)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Pro-zeta-carotene desaturase, prolycopene producing (EC 1.-.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Squalene--hopene cyclase (EC 5.4.99.17)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Zeaxanthin glucosyl transferase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxyneurosporene methyltransferase (EC 2.1.1.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxyneurosporene synthase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene beta cyclase (EC 1.14.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene dehydrogenase and related proteins	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene epsilon cyclase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
"phi-Carotenoid synthase" (EC 1.3.-.- and EC 2.1.1-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
CrtT-methyltransferase-like protein	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
CrtV-methyltransferase-like protein	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dehydrosqualene synthase (EC 2.5.1.96)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4,4'-diapolycopene oxidase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene dehydrogenase (EC 1.14.99.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene cyclase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene elongase (EC 2.5.1.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
C50 carotenoid epsilon cyclase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Methoxyneurosporene dehydrogenase (EC 1.14.99.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Regulator of carotenoid biosynthesis	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxyneurosporene dehydrogenase (EC 1.-.-.-)	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
gamma-carotene desaturase, putative	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
gamma-carotene hydroxylase	Carotenoids	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Octaprenyl diphosphate synthase (EC 2.5.1.90)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Undecaprenyl diphosphate synthase (EC 2.5.1.31)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Solanesyl diphosphate synthase (EC 2.5.1.11)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4,4'-diaponeurosporenoate glycosyltransferase (EC 2.4.1.-)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dehydrosqualene desaturase (EC 1.14.99.-) (Diapophytoene desaturase) (4,4'-diapophytoene desaturase)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dehydrosqualene synthase (EC 2.5.1.96)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Glycosyl-4,4'-diaponeurosporenoate acyltransferase precursor (EC 2.3.1.-)	Polyprenyl_Diphosphate_Biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-aminomuconate deaminase (EC 3.5.99.5)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-aminomuconate semialdehyde dehydrogenase (EC 1.2.1.32)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-4-pentenoate hydratase (EC 4.2.1.80)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
4-oxalocrotonate decarboxylase (EC 4.1.1.77)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Kynureninase (EC 3.7.1.3)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Kynurenine 3-monooxygenase (EC 1.14.13.9)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Kynurenine formamidase (EC 3.5.1.9)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan 2,3-dioxygenase (EC 1.13.11.11)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Kynurenine formamidase, bacterial (EC 3.5.1.9)	Tryptophan_catabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Predicted peroxy-aminoacrylate reductase RutC, likely plays detoxification role in pyrimidine catabolism pathway	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Predicted amidohydrolase RutB in novel pyrimidine catabolism pathway	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Predicted flavin reductase RutF in novel pyrimidine catabolism pathway	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Predicted monooxygenase RutA in novel pyrimidine catabolism pathway	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Predicted reductase RutE in novel pyrimidine catabolism pathway	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Transcriptional regulator RutR of pyrimidine catabolism (TetR family)	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Uracil permease	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Beta-ureidopropionase (EC 3.5.1.6)	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Dihydropyrimidinase (EC 3.5.2.2)	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Possible pyrimidine permease in reductive pathway	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Pyrimidine ABC transporter, ATP-binding protein	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Pyrimidine ABC transporter, substrate-binding component	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Pyrimidine ABC transporter, transmembrane component 1	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Pyrimidine ABC transporter, transmembrane component 2	Pyrimidine_utilization	Nucleosides and Nucleotides	Pyrimidines
Serine hydroxymethyltransferase (EC 2.1.2.1)	YggSProC		
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	YggSProC		
Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)	YggSProC		
Lipoprotein signal peptidase (EC 3.4.23.36)	YggSProC		
Cell division protein FtsZ (EC 3.4.24.-)	YggSProC		
Cell division protein FtsA	YggSProC		
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	YggSProC		
Aspartokinase (EC 2.7.2.4)	YggSProC		
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	YggSProC		
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	YggSProC		
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	YggSProC		
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	YggSProC		
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	YggSProC		
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	YggSProC		
FIG001583: hypothetical protein, contains S4-like RNA binding domain	YggSProC		
Threonine dehydratase (EC 4.3.1.19)	YggSProC		
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	YggSProC		
SAM-dependent methyltransferase, MraW methylase family (EC 2.1.1.-)	YggSProC		
Inosose dehydratase (EC 4.2.1.44)	YggSProC		
Threonine dehydratase biosynthetic (EC 4.3.1.19)	YggSProC		
Threonine dehydratase, catabolic (EC 4.3.1.19)	YggSProC		
Putative translation initiation inhibitor, yjgF family	YggSProC		
YfiH	YggSProC		
Predicted peroxy-aminoacrylate reductase RutC, likely plays detoxification role in pyrimidine catabolism pathway	YggSProC		
phosphatidylcholine-hydrolyzing phospholipase D (PLD) family	YggSProC		
Holliday junction DNA helicase RuvA	RuvABC_plus_a_hypothetical	DNA Metabolism	DNA recombination
Holliday junction DNA helicase RuvB	RuvABC_plus_a_hypothetical	DNA Metabolism	DNA recombination
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	RuvABC_plus_a_hypothetical	DNA Metabolism	DNA recombination
FIG000859: hypothetical protein YebC	RuvABC_plus_a_hypothetical	DNA Metabolism	DNA recombination
FIG033889: YebC paralog in Betaproteobacteria	RuvABC_plus_a_hypothetical	DNA Metabolism	DNA recombination
FIG033889: YebC paralog in Clostridia	RuvABC_plus_a_hypothetical	DNA Metabolism	DNA recombination
Arginine pathway regulatory protein ArgR, repressor of arg regulon	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carbamate kinase (EC 2.7.2.2)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine antiporter ArcD	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, permease protein ArtM	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine N-succinyltransferase (EC 2.3.1.109)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Succinylornithine transaminase (EC 2.6.1.81)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine aminotransferase (EC 2.6.1.13)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Biosynthetic arginine decarboxylase (EC 4.1.1.19)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine decarboxylase (EC 4.1.1.19)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine decarboxylase (EC 4.1.1.17)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Agmatine deiminase (EC 3.5.3.12)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-carbamoylputrescine amidase (EC 3.5.1.53)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginase (EC 3.5.3.1)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine utilization regulatory protein RocR	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine permease RocE	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Agmatinase (EC 3.5.3.11)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine cyclodeaminase (EC 4.3.1.12)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine utilization protein RocB	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine deiminase (EC 3.5.3.6)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Succinylglutamate desuccinylase (EC 3.5.1.96)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Succinylarginine dihydrolase (EC 3.5.3.23)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, permease protein ArtQ	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine decarboxylase, catabolic (EC 4.1.1.19)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator of catabolic arginine decarboxylase (adiA)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/agmatine antiporter	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, periplasmic arginine-binding protein ArtI	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, ATP-binding protein ArtP	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine aminotransferase (EC 2.6.1.82)	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine ABC transporter, ATP-binding protein AotP	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine ABC transporter, permease protein AotQ	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine ABC transporter, permease protein AotM	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Proline	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	Proline	Experimental Subsystems	
Cysteine synthase (EC 2.5.1.47)	Proline	Experimental Subsystems	
Glutamate 5-kinase (EC 2.7.2.11)	Proline	Experimental Subsystems	
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Proline	Experimental Subsystems	
N-carbamoylputrescine amidase (EC 3.5.1.53)	Proline	Experimental Subsystems	
Arginase (EC 3.5.3.1)	Proline	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	Proline	Experimental Subsystems	
Arginine deiminase (EC 3.5.3.6)	Proline	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	Proline	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	Proline	Experimental Subsystems	
Membrane alanine aminopeptidase N (EC 3.4.11.2)	Proline	Experimental Subsystems	
Tripeptide aminopeptidase (EC 3.4.11.4)	Proline	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	Proline	Experimental Subsystems	
Agmatine deiminase (EC 3.5.3.12)	Proline	Experimental Subsystems	
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	Proline	Experimental Subsystems	
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Proline	Experimental Subsystems	
UPF0301 protein YqgE	Proline	Experimental Subsystems	
Twitching motility protein PilT	Proline	Experimental Subsystems	
COG1496: Uncharacterized conserved protein	Proline	Experimental Subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	Proline	Experimental Subsystems	
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	Proline	Experimental Subsystems	
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	Proline	Experimental Subsystems	
Glutamyl-tRNA synthetase (EC 6.1.1.17)	Proline	Experimental Subsystems	
Glutamyl-tRNA reductase (EC 1.2.1.70)	Proline	Experimental Subsystems	
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Proline	Experimental Subsystems	
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	Proline	Experimental Subsystems	
RNA-binding C-terminal domain PUA	Proline	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type	Proline	Experimental Subsystems	
FIG001583: hypothetical protein, contains S4-like RNA binding domain	Proline	Experimental Subsystems	
FIG001960: FtsZ-interacting protein related to cell division	Proline	Experimental Subsystems	
Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3)	Proline	Experimental Subsystems	
5-oxoprolinase (EC 3.5.2.9)	Proline	Experimental Subsystems	
5-aminolevulinate synthase (EC 2.3.1.37)	Proline	Experimental Subsystems	
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Proline	Experimental Subsystems	
Late competence protein ComER, similarity with Pyrroline-5-carboxylate reductase	Proline	Experimental Subsystems	
Ornithine aminotransferase (EC 2.6.1.13)	Proline	Experimental Subsystems	
Putative exported protein clustered with Gamma-glutamyltranspeptidase	Proline	Experimental Subsystems	
Similar to Glutathione synthetase	Proline	Experimental Subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	Proline	Experimental Subsystems	
Similar to Glutamate--cysteine ligase (EC 6.3.2.2), function unknown	Proline	Experimental Subsystems	
Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1)	Proline	Experimental Subsystems	
Predicted alternative glutathione synthetase (EC 6.3.2.3)	Proline	Experimental Subsystems	
CBSS-74546.3.peg.720: hypothetical protein	Proline	Experimental Subsystems	
Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), N-terminal domain	Proline	Experimental Subsystems	
Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), C-terminal domain	Proline	Experimental Subsystems	
Glutamate--cysteine ligase archaeal (EC 6.3.2.2)	Proline	Experimental Subsystems	
Ornithine carbamoyltransferase OTC/ARG3	Proline	Experimental Subsystems	
DUF1537 ygbK type II	DUF1537	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	DUF1537	Experimental Subsystems	
Gluconate permease	DUF1537	Experimental Subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	DUF1537	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	DUF1537	Experimental Subsystems	
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	DUF1537	Experimental Subsystems	
Hydroxypyruvate isomerase (EC 5.3.1.22)	DUF1537	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	DUF1537	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	DUF1537	Experimental Subsystems	
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	DUF1537	Experimental Subsystems	
Glutaminase (EC 3.5.1.2)	DUF1537	Experimental Subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	DUF1537	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	DUF1537	Experimental Subsystems	
Domain of unknown function DUF1537, YgbK-like	DUF1537	Experimental Subsystems	
2-keto-3-deoxygluconate permease (KDG permease)	DUF1537	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	DUF1537	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	DUF1537	Experimental Subsystems	
transcriptional regulator, DeoR family	DUF1537	Experimental Subsystems	
DUF1537 LInked to Rubiscolike protein	DUF1537	Experimental Subsystems	
similar to ribulose-1,5-bisphosphate carboxylase, Type III	DUF1537	Experimental Subsystems	
Dihydrodipicolinate synthase family	DUF1537	Experimental Subsystems	
DUF1537 linked to pdxA	DUF1537	Experimental Subsystems	
PdxA-like	DUF1537	Experimental Subsystems	
D-glycerate 3-kinase (EC 2.7.1.31), plant type	DUF1537	Experimental Subsystems	
Putative sugar isomerase involved in processing of exogenous sialic acid, yjgK-like	DUF1537	Experimental Subsystems	
KDO-hydrolase	DUF1537	Experimental Subsystems	
DUF1537	DUF1537	Experimental Subsystems	
3-hydroxy-D-aspartate aldolase (EC 4.1.3.41)	DUF1537	Experimental Subsystems	
COG1720: Uncharacterized conserved protein	methyl_t6A	RNA Metabolism	RNA processing and modification
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	ct6A	RNA Metabolism	RNA processing and modification
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	ct6A	RNA Metabolism	RNA processing and modification
Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE	ct6A	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t6A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t6A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t6A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	t6A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t6A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
S-adenosylmethionine-dependent methyltransferase YaeB	m(6)t(6)A_methlytransferase_TsaA	RNA Metabolism	RNA processing and modification
COG1720: Uncharacterized conserved protein	m(6)t(6)A_methlytransferase_TsaA	RNA Metabolism	RNA processing and modification
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Agmatinase (EC 3.5.3.11)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine decarboxylase (EC 4.1.1.19)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine antiporter ArcD	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Spermidine synthase (EC 2.5.1.16)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine decarboxylase, catabolic (EC 4.1.1.19)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/agmatine antiporter	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Biosynthetic arginine decarboxylase (EC 4.1.1.19)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carbamate kinase (EC 2.7.2.2)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine decarboxylase (EC 4.1.1.17)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine transport system permease protein PotH (TC 3.A.1.11.2)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine transport system permease protein PotI (TC 3.A.1.11.2)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine/proton symporter, putrescine/ornithine antiporter PotE	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Spermidine N1-acetyltransferase (EC 2.3.1.57)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator of catabolic arginine decarboxylase (adiA)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Agmatine deiminase (EC 3.5.3.12)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carboxynorspermidine decarboxylase (EC 4.1.1.96)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-carbamoylputrescine amidase (EC 3.5.1.53)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine antiporter	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator, MerR family, near polyamine transporter	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Agmatine/putrescine antiporter, associated with agmatine catabolism	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine decarboxylase (EC 4.1.1.17), eukaryotic	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Probable two-component sensor, near polyamine transporter	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
DNA-binding response regulator, LuxR family, near polyamine transporter	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine carbamoyltransferase (EC 2.1.3.6)	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator, luxR family, associated with agmatine catabolism	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Probable spermidine/putrescine substrate binding protein in Mollicutes	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted polyamine sensor NspS, involved in biofilm formation	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator, TetR family, associated with agmatine catabolism	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine-ornithine antiporter	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine decarboxylase antizyme	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine decarboxylase antizyme inhibitor	Polyamine_Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putative sensor and ATPase, component of G-protein-coupled receptor (GPCR) system	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Roadblock/LC7 protein, putative GTPase-activating (GAP) component of G-protein-coupled receptor (GPCR) system	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
DUF742 protein, component of G-protein-coupled receptor (GPCR) system	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Small Ras-like GTPase, component of G-protein-coupled receptor (GPCR) system	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
P450 cytochrome, component of G-protein-coupled receptor (GPCR) system	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
P450 cytochrome, component of G-protein-coupled receptor (GPCR) system, second copy	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indole prenyltransferase (EC 2.5.1.-)	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Flavin-dependent monooxygenase in a prenylated indole derivative biosynthesis cluster	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophanase (EC 4.1.99.1) in a prenylated indole derivative biosynthesis cluster	Prenylated_indole_derivatives_in_actinomycetes	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Putative sensor and ATPase, component of G-protein-coupled receptor (GPCR) system	G-protein-coupled_receptor_(GPCR)_system_in_Actinobacteria	Regulation and Cell signaling	
Roadblock/LC7 protein, putative GTPase-activating (GAP) component of G-protein-coupled receptor (GPCR) system	G-protein-coupled_receptor_(GPCR)_system_in_Actinobacteria	Regulation and Cell signaling	
DUF742 protein, component of G-protein-coupled receptor (GPCR) system	G-protein-coupled_receptor_(GPCR)_system_in_Actinobacteria	Regulation and Cell signaling	
Small Ras-like GTPase, component of G-protein-coupled receptor (GPCR) system	G-protein-coupled_receptor_(GPCR)_system_in_Actinobacteria	Regulation and Cell signaling	
P450 cytochrome, component of G-protein-coupled receptor (GPCR) system	G-protein-coupled_receptor_(GPCR)_system_in_Actinobacteria	Regulation and Cell signaling	
P450 cytochrome, component of G-protein-coupled receptor (GPCR) system, second copy	G-protein-coupled_receptor_(GPCR)_system_in_Actinobacteria	Regulation and Cell signaling	
L-Amino-acid oxidase( EC:1.4.3.2 )	L-amino_acid_oxidase_familiy	Experimental Subsystems	
Anthranilate synthase, aminase component (EC 4.1.3.27)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Tryptophan synthase alpha chain (EC 4.2.1.20)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Tryptophan synthase beta chain (EC 4.2.1.20)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Aminodeoxychorismate lyase (EC 4.1.3.38)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Isochorismate synthase (EC 5.4.4.2)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Isochorismatase (EC 3.3.2.1)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Tryptophan synthase beta chain like (EC 4.2.1.20)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Transcriptional repressor protein TrpR	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Aromatic amino acid transport protein	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Aromatic amino acid transport protein AroP	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Tryptophan-specific transport protein	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Isochorismate pyruvate-lyase (EC 4.-.-.-)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Para-amino-L-phenylalanine methyltransferase (EC 2.1.1.-)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
2-Amino-2-deoxy-isochorismate hydrolase (EC 3.-.-.-)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II PhzC (EC 2.5.1.54)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Low affinity-tryptophan transporter protein	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Tryptophan leader peptide	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
Isochorismate pyruvate-lyase of siderophore biosynthesis	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
2-Amino-2-deoxy-isochorismate synthase (EC 4.1.3.-)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
4-amino, 4-deoxychorismate mutase (EC 5.4.99.-)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
4-amino, 4-deoxyprephenate dehydrogenase (EC 1.3.1.-)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
4-amino-4-deoxychorismate synthase, amidotransferase component , aminase component (EC 2.6.1.-)	Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.		
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	t(6)A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t(6)A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t(6)A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t(6)A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t(6)A_synthesis_in_bacteria	RNA Metabolism	RNA processing and modification
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine cleavage system H protein	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine cleavage system transcriptional activator GcvA	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine cleavage system transcriptional antiactivator GcvR	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Lipoate-protein ligase A	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine riboswitch	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Sodium/glycine symporter GlyP	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Similar to Glycine cleavage system H protein	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
Lipoate-protein ligase A type 2	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
L-serine dehydratase (EC 4.3.1.17)	Glycine_cleavage_system	Amino Acids and Derivatives	Alanine, serine, and glycine
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t6A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t6A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
p53-regulating protein kinase (human PRPK/yeast YGR262c)	t6A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t6A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
KEOPS complex component Pcc1	t6A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
KEOPS complex component CGI121	t6A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
GON7	t6A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
tRNA-guanine transglycosylase (EC 2.4.2.29)	Q_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	Q_RZ	RNA Metabolism	RNA processing and modification
queuine tRNA-ribosyltransferase 1 (EC 2.4.2.29)	Q_RZ	RNA Metabolism	RNA processing and modification
Hypothetical protein DUF2419	Q_RZ	RNA Metabolism	RNA processing and modification
queuine tRNA-ribosyltransferase domain containing 1 (EC 2.4.2.29)	Q_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	Q_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 short	Q_RZ	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Queuosine biosynthesis QueD, PTPS-I	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueE Radical SAM	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueC ATPase	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase (EC 1.7.1.13)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
tRNA-guanine transglycosylase (EC 2.4.2.29)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Putative preQ0 transporter	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Permease of the drug/metabolite transporter (DMT) superfamily	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) PUA domain	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase-like	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
COG2047: Uncharacterized protein (ATP-grasp superfamily)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
glutamyl-Q-tRNA synthetase	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Epoxyqueuosine (oQ) reductase QueG	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Archaeosine cluster gene X	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 short	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Glutamine amidotransferases class-II (GATase)	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Hypothetical protein DUF2419	Queuosine_exploration_RZ	RNA Metabolism	RNA processing and modification
Threonyl-tRNA synthetase (EC 6.1.1.3)	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
FIG049476: HIT family protein	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis (Lauroyl/myristoyl acyltransferase)	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
Acyl-CoA thioesterase II (EC 3.1.2.-)	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
FIG000859: hypothetical protein YebC	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
FIG019327: membrane domain	CBSS-1806.1.peg.1285	Clustering-based subsystems	contains Thr-tRNA-syn, pyridoxine biosyn, lipid A biosyn, 3 hypos
hypothetical protein	CBSS-227321.4.peg.4854		
Decapping enzyme complex component DCP1	CBSS-227321.4.peg.4854		
Inositol polyphosphate 5-phosphatase and related proteins	CBSS-227321.4.peg.4854		
TRAP-type D-Mannuronate transport system, small permease component	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
TRAP-type D-Mannuronate transport system, large permease component	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
TRAP-type D-Mannuronate transport system, periplasmic component	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
D-mannuronate reductase (EC 1.1.1.-)	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
Phosphoglycerate dehydrogenase TM0327, putative	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
Altronate dehydratase (EC 4.2.1.7)	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
putative malate dehydrogenase	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
Transcriptional regulator, GntR family	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
transcriptional regulator, RpiR family	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
Uronate isomerase (EC 5.3.1.12)	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
Mannonate dehydratase (EC 4.2.1.8)	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
D-mannonate oxidoreductase (EC 1.1.1.57)	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
Altronate oxidoreductase (EC 1.1.1.58)	D-Mannuronate_utilization_with_TRAP_transporters	Experimental Subsystems	
DMSP demethylase (DmdA) (EC 2.1.2.10)	ICSI_Bob	Experimental Subsystems	
Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)	ICSI_Bob	Experimental Subsystems	
Acyl-CoA dehydrogenase (EC 1.3.8.7)	ICSI_Bob	Experimental Subsystems	
3-methylthioacryloyl-CoA hydratase (DmdD)	ICSI_Bob	Experimental Subsystems	
Transcriptional activator protein LuxR	BactLuciferaseComplex	Miscellaneous	
Autoinducer synthesis protein LuxI	BactLuciferaseComplex	Miscellaneous	
LuxC, acyl-CoA reductase (EC 1.2.1.50)	BactLuciferaseComplex	Miscellaneous	
LuxD. acyl transferase (EC 2.3.1.-)	BactLuciferaseComplex	Miscellaneous	
LuxA, luciferase alpha chain (EC 1.14.14.3)	BactLuciferaseComplex	Miscellaneous	
LuxB, luciferase beta chain (EC 1.14.14.3)	BactLuciferaseComplex	Miscellaneous	
LuxE, long-chain-fatty-acid ligase (EC 6.2.1.19)	BactLuciferaseComplex	Miscellaneous	
LuxG, NAD(P)H-dependent FMN reductase (EC 1.5.1.29)	BactLuciferaseComplex	Miscellaneous	
N-(3-hydroxybutanoyl)-L- homoserine lactone synthase LuxM	BactLuciferaseComplex	Miscellaneous	
Autoinducer 1 sensor kinase/phosphatase LuxN (EC 2.7.3.-) (EC 3.1.3.-)	BactLuciferaseComplex	Miscellaneous	
Autoinducer 2-binding periplasmic protein LuxP precursor	BactLuciferaseComplex	Miscellaneous	
Autoinducer 2 sensor kinase/phosphatase LuxQ (EC 2.7.3.-) (EC 3.1.3.-)	BactLuciferaseComplex	Miscellaneous	
Autoinducer-2 production protein LuxS	BactLuciferaseComplex	Miscellaneous	
S-ribosylhomocysteine lyase (EC 4.4.1.21)	BactLuciferaseComplex	Miscellaneous	
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	BactLuciferaseComplex	Miscellaneous	
Regulatory protein LuxO	BactLuciferaseComplex	Miscellaneous	
Phosphorelay protein LuxU	BactLuciferaseComplex	Miscellaneous	
Quorum-sensing regulator of virulence HapR	BactLuciferaseComplex	Miscellaneous	
Sensor histidine kinase CqsS	BactLuciferaseComplex	Miscellaneous	
Transcriptional activator protein LuxR	Bacterial_Luciferases	Miscellaneous	
Autoinducer synthesis protein LuxI	Bacterial_Luciferases	Miscellaneous	
LuxC, acyl-CoA reductase (EC 1.2.1.50)	Bacterial_Luciferases	Miscellaneous	
LuxD. acyl transferase (EC 2.3.1.-)	Bacterial_Luciferases	Miscellaneous	
LuxA, luciferase alpha chain (EC 1.14.14.3)	Bacterial_Luciferases	Miscellaneous	
LuxB, luciferase beta chain (EC 1.14.14.3)	Bacterial_Luciferases	Miscellaneous	
LuxE, long-chain-fatty-acid ligase (EC 6.2.1.19)	Bacterial_Luciferases	Miscellaneous	
LuxG, NAD(P)H-dependent FMN reductase (EC 1.5.1.29)	Bacterial_Luciferases	Miscellaneous	
N-(3-hydroxybutanoyl)-L- homoserine lactone synthase LuxM	Bacterial_Luciferases	Miscellaneous	
Autoinducer 1 sensor kinase/phosphatase LuxN (EC 2.7.3.-) (EC 3.1.3.-)	Bacterial_Luciferases	Miscellaneous	
Autoinducer 2-binding periplasmic protein LuxP precursor	Bacterial_Luciferases	Miscellaneous	
Autoinducer 2 sensor kinase/phosphatase LuxQ (EC 2.7.3.-) (EC 3.1.3.-)	Bacterial_Luciferases	Miscellaneous	
Autoinducer-2 production protein LuxS	Bacterial_Luciferases	Miscellaneous	
S-ribosylhomocysteine lyase (EC 4.4.1.21)	Bacterial_Luciferases	Miscellaneous	
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Bacterial_Luciferases	Miscellaneous	
Regulatory protein LuxO	Bacterial_Luciferases	Miscellaneous	
Phosphorelay protein LuxU	Bacterial_Luciferases	Miscellaneous	
Quorum-sensing regulator of virulence HapR	Bacterial_Luciferases	Miscellaneous	
Sensor histidine kinase CqsS	Bacterial_Luciferases	Miscellaneous	
S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase, BtaA protein	Betaine_lipids_in_bactera	Fatty Acids, Lipids, and Isoprenoids	
S-adenosylmethionine:diacylgycerolhomoserine-N-methyltransferase, BtaB protein	Betaine_lipids_in_bactera	Fatty Acids, Lipids, and Isoprenoids	
Uronate isomerase (EC 5.3.1.12)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Altronate dehydratase (EC 4.2.1.7)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Altronate oxidoreductase (EC 1.1.1.58)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Mannonate dehydratase (EC 4.2.1.8)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
D-mannonate oxidoreductase (EC 1.1.1.57)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
TRAP-type hexuronate transport system, small permease component	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
TRAP-type hexuronate transport system, periplasmic component	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
TRAP-type hexuronate transport system, large permease component	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Hexuronate utilization transcriptional regulator, GntR family	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Glucarate dehydratase (EC 4.2.1.40)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
predicted Alpha-glucuronidase	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
D-galactarate dehydratase (EC 4.2.1.42)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
TRAP-type L-gulonate transport system, large permease component	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
TRAP-type gulonate transport system, periplasmic component	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
TRAP-type L-gulonate transport system, small permease component	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
D-galactarate permease	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
L-gulonate dehydrogenase (EC 1.1.1.-)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Predicted D-glucarate or D-galactorate regulator, GntR family	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
predicted Galactarolactonase	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Uronate dehydrogenase (EC 1.1.1.203)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
predicted Mannonate utilization regulator, GntR	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Pectin degradation protein KdgF	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Hexuronate utilization operon transcriptional repressor ExuR	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Predicted Galactarolactonase and Glucarolactonase	Hexuronate_utilization_with_TRAP_transporters__	Experimental Subsystems	
Inclusion membrane protein-1	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-2	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-3	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-4	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-5	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-14	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-16	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-18	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-29	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-30	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-32	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-37	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-38	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-39	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-40	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-42	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-43	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-44	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-45	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-47	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-50	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-52	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-46	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-6	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-20	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-54	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-51	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-53	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-55	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-56	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-57	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-58	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-59	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-60	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-61	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-62	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-63	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-64	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-65	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-66	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-67	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-68	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-69	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-70	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-71	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-72	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-73	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-7	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-8	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-9	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-10	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-11	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-12	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-13	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-15	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-17	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-19	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-21	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-22	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-23	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-24	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-25	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-26	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-27	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-28	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-31	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-33	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-34	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-35	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-36	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-41	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-48	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
Inclusion membrane protein-49	Inclusion_membrane_proteins_supporting_intracellular_life_styles_in_Chlamydiales	Virulence, Disease and Defense	Invasion and intracellular resistance
3-hydroxypropionate dehydrogenase DddA, flavin-containing (EC 1.1.1.59)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Malonate-semialdehyde dehydrogenase (EC 1.2.1.18)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Dimethylsulfoniopropionate CoA transferase/lyase DddD, 3-hydroxypropionate generating	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
FIG00615979: hypothetical protein	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Dimethylsulfoniopropionate (DSMP) lyase DddP	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
DMSP demethylase (DmdA) (EC 2.1.2.10)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
DMSP demethylase transcriptional regulator	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Aminotransferase involved in DMSP breakdown	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
3-methylmercaptopropionyl-CoA ligase (DmdB)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Transmembrane protein involved in DMSP breakdown	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
FIG098787: protein involved in DMSP breakdown	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Dimethylsulfoniopropionate (DSMP) lyase DddL	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
3-methylthioacryloyl-CoA hydratase 2 (DmdD2)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Dimethylsulfoniopropionate (DSMP) lyase DddW	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Periplasmic dimethylsulfoniopropionate lyase DddY	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Flavocytochrome c flavin subunit	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Flavocytochrome c heme subunit	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
FIG01058720: hypothetical protein	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Dimethylsulfoniopropionate (DSMP) lyase DddQ	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Transcriptional regulator, AraC family, clustered with MMPA degradation genes	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
3-methylthioacryloyl-CoA hydratase (DmdD)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Putative 3-hydroxypropionate dehydrogenase DddB, Fe-containing (EC 1.1.1.-)	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
Dimethylsulfoniopropionate transporter	Bacterial_pathways_for_dimethylsulfoniopropionate_and_acrylate_catabolism	Sulfur Metabolism	
GTP-binding and nucleic acid-binding protein YchF	M61	Experimental Subsystems	
Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)	M61	Experimental Subsystems	
Thiol:disulfide interchange protein DsbC	M61	Experimental Subsystems	
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	M61	Experimental Subsystems	
Peptidase family M61 with PDZ domain	M61	Experimental Subsystems	
3-methylthioacryloyl-CoA hydratase 2 (DmdD2)	M61	Experimental Subsystems	
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG000859: hypothetical protein YebC	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG033889: YebC paralog in Betaproteobacteria	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Holliday junction DNA helicase RuvA	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Holliday junction DNA helicase RuvB	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Threonyl-tRNA synthetase (EC 6.1.1.3)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Acyl-CoA thioesterase II (EC 3.1.2.-)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
AMP nucleosidase (EC 3.2.2.4)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
GTP-binding and nucleic acid-binding protein YchF	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Putative Nudix hydrolase YfcD (EC 3.6.-.-)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin triphosphate pyrophosphohydolase type 2	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG000605: protein co-occurring with transport systems (COG1739)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG018171: hypothetical protein of Cupin superfamily	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin triphosphate pyrophosphohydolase, putative, Actinobacterial type, NudB-like	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG049476: HIT family protein	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis (Lauroyl/myristoyl acyltransferase)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG019327: membrane domain	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG007491: hypothetical protein YeeN	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG033889: YebC paralog in Clostridia	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG012576: mutT/nudix family protein	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
FIG018429: hypothetical protein	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin triphosphate pyrophosphohydolase	YebC	Miscellaneous	Plant-Prokaryote comparative genomics
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	Respiration_/_Human_gut_microbiome		
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	Respiration_/_Human_gut_microbiome		
Predicted hydroxylamine reductase, associated with nitrite assimilation	Respiration_/_Human_gut_microbiome		
Anaerobic sulfite reductase subunit A	Respiration_/_Human_gut_microbiome		
Anaerobic sulfite reductase subunit B	Respiration_/_Human_gut_microbiome		
Anaerobic sulfite reductase subunit C (EC 1.8.1.-)	Respiration_/_Human_gut_microbiome		
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Respiration_/_Human_gut_microbiome		
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Respiration_/_Human_gut_microbiome		
Succinate dehydrogenase cytochrome b subunit	Respiration_/_Human_gut_microbiome		
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Respiration_/_Human_gut_microbiome		
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Respiration_/_Human_gut_microbiome		
Cytochrome c552 precursor (EC 1.7.2.2)	Respiration_/_Human_gut_microbiome		
Cytochrome c nitrite reductase, small subunit NrfH	Respiration_/_Human_gut_microbiome		
Thiosulfate reductase precursor (EC 1.-.-.-)	Respiration_/_Human_gut_microbiome		
Thiosulfate reductase electron transport protein phsB	Respiration_/_Human_gut_microbiome		
Dissimilatory sulfite reductase, alpha subunit (EC 1.8.99.3)	Respiration_/_Human_gut_microbiome		
Dissimilatory sulfite reductase, beta subunit (EC 1.8.99.3)	Respiration_/_Human_gut_microbiome		
Dissimilatory sulfite reductase D	Respiration_/_Human_gut_microbiome		
Sulfite reduction-associated complex DsrMKJOP iron-sulfur protein DsrO (=HmeA)	Respiration_/_Human_gut_microbiome		
Sulfite reduction-associated complex DsrMKJOP protein DsrP (= HmeB)	Respiration_/_Human_gut_microbiome		
Sulfite reduction-associated complex DsrMKJOP protein DsrM (= HmeC)	Respiration_/_Human_gut_microbiome		
Sulfite reduction-associated complex DsrMKJOP protein DsrK (=HmeD)	Respiration_/_Human_gut_microbiome		
Sulfite reduction-associated complex DsrMKJOP multiheme protein DsrJ (=HmeF)	Respiration_/_Human_gut_microbiome		
Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)	Respiration_/_Human_gut_microbiome		
Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)	Respiration_/_Human_gut_microbiome		
Adenylylsulfate reductase-associated complex QmoABC, protein QmoA	Respiration_/_Human_gut_microbiome		
Adenylylsulfate reductase-associated complex QmoABC, protein QmoB	Respiration_/_Human_gut_microbiome		
Adenylylsulfate reductase-associated complex QmoABC, protein QmoC	Respiration_/_Human_gut_microbiome		
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	Respiration_/_Human_gut_microbiome		
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)	Respiration_/_Human_gut_microbiome		
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)	Respiration_/_Human_gut_microbiome		
Predicted anaerobic reductase, iron-sulfur binding	Respiration_/_Human_gut_microbiome		
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly	Respiration_/_Human_gut_microbiome		
Cytochrome c-type heme lyase subunit nrfI, nitrite reductase complex assembly	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase, subunit IV (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
CtaG protein	Respiration_/_Human_gut_microbiome		
AA3-600 quinol oxidase subunit IIII	Respiration_/_Human_gut_microbiome		
AA3-600 quinol oxidase subunit IV	Respiration_/_Human_gut_microbiome		
AA3-600 quinol oxidase subunit I	Respiration_/_Human_gut_microbiome		
AA3-600 quinol oxidase subunit II	Respiration_/_Human_gut_microbiome		
Menaquinone-cytochrome C reductase iron-sulfur subunit	Respiration_/_Human_gut_microbiome		
Menaquinone-cytochrome c reductase, cytochrome B subunit	Respiration_/_Human_gut_microbiome		
Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit	Respiration_/_Human_gut_microbiome		
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Respiration_/_Human_gut_microbiome		
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Respiration_/_Human_gut_microbiome		
Respiratory nitrate reductase delta chain (EC 1.7.99.4)	Respiration_/_Human_gut_microbiome		
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	Respiration_/_Human_gut_microbiome		
Nitrate/nitrite transporter NarK	Respiration_/_Human_gut_microbiome		
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)	Respiration_/_Human_gut_microbiome		
Nitrate/nitrite transporter NasA	Respiration_/_Human_gut_microbiome		
Succinate dehydrogenase cytochrome b558 subunit	Respiration_/_Human_gut_microbiome		
Predicted anaerobic reductase, molybdopterin-binding subunit	Respiration_/_Human_gut_microbiome		
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Respiration_/_Human_gut_microbiome		
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Respiration_/_Human_gut_microbiome		
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Respiration_/_Human_gut_microbiome		
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Respiration_/_Human_gut_microbiome		
Cytochrome d ubiquinol oxidase subunit CydX (EC 1.10.3.-)	Respiration_/_Human_gut_microbiome		
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Respiration_/_Human_gut_microbiome		
Nitrate reductase cytochrome c550-type subunit	Respiration_/_Human_gut_microbiome		
Cytochrome c-type protein NapC	Respiration_/_Human_gut_microbiome		
Polyferredoxin NapH (periplasmic nitrate reductase)	Respiration_/_Human_gut_microbiome		
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Respiration_/_Human_gut_microbiome		
periplasmic diheme c-type cytochrome, NapB	Respiration_/_Human_gut_microbiome		
Ferredoxin-type protein NapF (periplasmic nitrate reductase)	Respiration_/_Human_gut_microbiome		
Nitrite transporter NirC	Respiration_/_Human_gut_microbiome		
Cytochrome c-type protein NrfB precursor	Respiration_/_Human_gut_microbiome		
NrfC protein	Respiration_/_Human_gut_microbiome		
NrfD protein	Respiration_/_Human_gut_microbiome		
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly	Respiration_/_Human_gut_microbiome		
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly	Respiration_/_Human_gut_microbiome		
Fumarate reductase subunit D	Respiration_/_Human_gut_microbiome		
Fumarate reductase subunit C	Respiration_/_Human_gut_microbiome		
Succinate dehydrogenase cytochrome b-556 subunit	Respiration_/_Human_gut_microbiome		
Succinate dehydrogenase hydrophobic membrane anchor protein	Respiration_/_Human_gut_microbiome		
Cytochrome c-type protein TorC	Respiration_/_Human_gut_microbiome		
Trimethylamine-N-oxide reductase (EC 1.6.6.9), TorA	Respiration_/_Human_gut_microbiome		
Functional role page for Chaperone protein TorD	Respiration_/_Human_gut_microbiome		
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Respiration_/_Human_gut_microbiome		
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Respiration_/_Human_gut_microbiome		
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3)	Respiration_/_Human_gut_microbiome		
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfE	Respiration_/_Human_gut_microbiome		
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfF	Respiration_/_Human_gut_microbiome		
Anaerobic selenate reductase protein YnfG	Respiration_/_Human_gut_microbiome		
Anaerobic selenate reductase protein YnfH	Respiration_/_Human_gut_microbiome		
Anaerobic selenate reductase chaperone YnfI	Respiration_/_Human_gut_microbiome		
FIG00639295: hypothetical protein	Respiration_/_Human_gut_microbiome		
Uncharacterized cytochrome b-like protein YdhU	Respiration_/_Human_gut_microbiome		
Uncharacterized ferredoxin-like protein YdhX	Respiration_/_Human_gut_microbiome		
FIG00637966: hypothetical protein	Respiration_/_Human_gut_microbiome		
Molybdopterin-containing protein YdhV, similar to aldehyde:ferredoxin oxidoreductase	Respiration_/_Human_gut_microbiome		
Putative oxidoreductase, Fe-S subunit YdhY	Respiration_/_Human_gut_microbiome		
Hypothetical protein CyfX, associated with predicted extracellular microaerobic reductase	Respiration_/_Human_gut_microbiome		
Predicted extracellular microaerobic reductase, FeS cluster membrane subunit	Respiration_/_Human_gut_microbiome		
Predicted extracellular microaerobic reductase, catalytic and thiol-binding subunit	Respiration_/_Human_gut_microbiome		
Predicted extracellular microaerobic reductase, flavin-binding subunit	Respiration_/_Human_gut_microbiome		
Predicted extracellular microaerobic reductase, anchor subunit	Respiration_/_Human_gut_microbiome		
Hypothetical protein, associated with Ydh genes, FMN binding	Respiration_/_Human_gut_microbiome		
Anaerobic dimethyl sulfoxide reductase associated 4Fe-4S dicluster protein, NapG-like	Respiration_/_Human_gut_microbiome		
Nitrate ABC transporter, nitrate-binding protein	Respiration_/_Human_gut_microbiome		
Nitrate ABC transporter, permease protein	Respiration_/_Human_gut_microbiome		
Nitrate ABC transporter, ATP-binding protein	Respiration_/_Human_gut_microbiome		
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Respiration_/_Human_gut_microbiome		
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	Respiration_/_Human_gut_microbiome		
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	Respiration_/_Human_gut_microbiome		
Tetrathionate reductase subunit A	Respiration_/_Human_gut_microbiome		
Tetrathionate reductase subunit C	Respiration_/_Human_gut_microbiome		
Tetrathionate reductase subunit B	Respiration_/_Human_gut_microbiome		
Thiosulfate reductase cytochrome B subunit	Respiration_/_Human_gut_microbiome		
Anaerobic dimethyl sulfoxide reductase chaperone DmsD	Respiration_/_Human_gut_microbiome		
Anaerobic dimethyl sulfoxide reductase associated ferredoxin, NapF-like	Respiration_/_Human_gut_microbiome		
Copper-containing nitrite reductase (EC 1.7.2.1)	Respiration_/_Human_gut_microbiome		
Predicted cytochrome C, associated with Ydh genes	Respiration_/_Human_gut_microbiome		
Anaerobic dimethyl sulfoxide reductase, integral membrane protein, NrfD-like	Respiration_/_Human_gut_microbiome		
Predicted anaerobic reductase, anchor subunit	Respiration_/_Human_gut_microbiome		
Predicted anaerobic reductase, chaperone	Respiration_/_Human_gut_microbiome		
Predicted anaerobic reductase, polyferredoxin	Respiration_/_Human_gut_microbiome		
Ferredoxin-type protein, NapF-like	Respiration_/_Human_gut_microbiome		
Trimethylamine-N-oxide reductase (EC 1.6.6.9), iron-sulfur binding subunit	Respiration_/_Human_gut_microbiome		
Integral membrane protein, NrfD-like	Respiration_/_Human_gut_microbiome		
Nitric-oxide reductase subunit B (EC 1.7.99.7)	Respiration_/_Human_gut_microbiome		
Predicted anaerobic reductase, FAD binding subunit	Respiration_/_Human_gut_microbiome		
Fumarate reductase cytochrome b subunit	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase maturation protein TsrH	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase maturation protein TsrI (ATPase)	Respiration_/_Human_gut_microbiome		
Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ	Respiration_/_Human_gut_microbiome		
Respiratory arsenate reductase, Mo binding subunit (ArrA)	Respiration_/_Human_gut_microbiome		
Respiratory arsentate reductase, FeS subunit (ArrB)	Respiration_/_Human_gut_microbiome		
Hypothetical protein YdhZ	Respiration_/_Human_gut_microbiome		
NrfD-like protein, associated with Ydh genes	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Periplasmic nitrate reductase component NapE	Respiration_/_Human_gut_microbiome		
Nitrous-oxide reductase (EC 1.7.99.6)	Respiration_/_Human_gut_microbiome		
Nitrous oxide reductase maturation protein NosR	Respiration_/_Human_gut_microbiome		
Nitrous oxide reductase maturation protein NosD	Respiration_/_Human_gut_microbiome		
Nitrous oxide reductase maturation protein NosF (ATPase)	Respiration_/_Human_gut_microbiome		
Nitrous oxide reductase maturation transmembrane protein NosY	Respiration_/_Human_gut_microbiome		
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Respiration_/_Human_gut_microbiome		
Predicted nitrite reductase [NAD(P)H] large subunit, associated with glutamine/glutamate metabolism	Respiration_/_Human_gut_microbiome		
Predicted nitrite reductase [NAD(P)H] small subunit, associated with glutamine/glutamate metabolism	Respiration_/_Human_gut_microbiome		
Predicted nitrate/nitrite antiporter	Respiration_/_Human_gut_microbiome		
NapM protein	Respiration_/_Human_gut_microbiome		
Anaerobic arsenite oxidase ArxA	Respiration_/_Human_gut_microbiome		
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein ArxB	Respiration_/_Human_gut_microbiome		
NrfD-family membrane protein ArxC	Respiration_/_Human_gut_microbiome		
polysulfide reductase, subunit A	Respiration_/_Human_gut_microbiome		
polysulfide reductase, subunit B	Respiration_/_Human_gut_microbiome		
polysulfide reductase, subunit C	Respiration_/_Human_gut_microbiome		
Putative succinate dehydrogenase cytochrome b subunit	Respiration_/_Human_gut_microbiome		
Thiosulfate reductase integral membrane protein	Respiration_/_Human_gut_microbiome		
Cytochrome cd1 nitrite reductase (EC:1.7.2.1)	Respiration_/_Human_gut_microbiome		
Nitric-oxide reductase subunit C (EC 1.7.99.7)	Respiration_/_Human_gut_microbiome		
Nitric oxide reductase activation protein NorQ	Respiration_/_Human_gut_microbiome		
Nitric oxide reductase activation protein NorD	Respiration_/_Human_gut_microbiome		
Cytochrome c-type protein NirT	Respiration_/_Human_gut_microbiome		
Cytochrome c-552 precursor NirB	Respiration_/_Human_gut_microbiome		
Cytochrome c551 NirM	Respiration_/_Human_gut_microbiome		
Cytochrome c oxidase polypeptide I (EC 1.9.3.1) / Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Respiration_/_Human_gut_microbiome		
Periplasmic nitrate reductase component NapK	Respiration_/_Human_gut_microbiome		
Ethylbenzene dehydrogenase alpha subunit (EC 1.17.99.2)	Respiration_/_Human_gut_microbiome		
Ethylbenzene dehydrogenase beta subunit (EC 1.17.99.2)	Respiration_/_Human_gut_microbiome		
Ethylbenzene dehydrogenase gamma subunit (EC 1.17.99.2)	Respiration_/_Human_gut_microbiome		
Perchlorate reductase subunit alpha (EC 1.97.1.-)	Respiration_/_Human_gut_microbiome		
Perchlorate reductase subunit beta (EC 1.97.1.-)	Respiration_/_Human_gut_microbiome		
Perchlorate reductase subunit gamma (EC 1.97.1.-)	Respiration_/_Human_gut_microbiome		
Perchlorate reductase assembly chaperone protein	Respiration_/_Human_gut_microbiome		
Arsenite oxidase small subunit (EC 1.20.98.1) (AOII)	Respiration_/_Human_gut_microbiome		
Arsenite oxidase large subunit (EC 1.20.98.1)	Respiration_/_Human_gut_microbiome		
4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein ArxB2	Respiration_/_Human_gut_microbiome		
Cytoplasmic chaperone TorD family protein ArxD	Respiration_/_Human_gut_microbiome		
Homocysteine S-methyltransferase (EC 2.1.1.10)	AdoMet_Repair_LMTB		
S-methylmethionine permease	AdoMet_Repair_LMTB		
Arginine/ornithine antiporter ArcD	AdoMet_Repair_LMTB		
S-adenosylmethionine synthetase (EC 2.5.1.6)	AdoMet_Repair_LMTB		
Adenosylhomocysteinase (EC 3.3.1.1)	AdoMet_Repair_LMTB		
amino acid permease	AdoMet_Repair_LMTB		
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)	AdoMet_Repair_LMTB		
AdoMet-AdoHcy transporter	AdoMet_Repair_LMTB		
Multidrug resistance integral membrane efflux protein EmrB	AdoMet_Repair_LMTB		
AdoMet-AdoHcy transporter 2	AdoMet_Repair_LMTB		
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	FolateExerciseMaizeClassVDC	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	FolateExerciseMaizeClassVDC	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	FolateExerciseMaizeClassVDC	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Test2	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Test2	Experimental Subsystems	
Putative DHNTP pyrophosphatase	Test2	Experimental Subsystems	
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Citrate synthase (si) (EC 2.3.3.1)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase (EC 4.2.1.3)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) flavoprotein subunit SDH1/SDHA (EC 1.3.5.1)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) iron-sulfur subunit SDH2/SDHB (EC 1.3.5.1)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) cytochrome b560 subunit SDH3/SDHC	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) membrane anchor subunit SDH4/SDHD	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH5	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH6	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH7	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase (ubiquinone) plant-specific subunit SDH8	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class II (EC 4.2.1.2)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Malate dehydrogenase (EC 1.1.1.37)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
NAD-dependent malic enzyme (EC 1.1.1.38)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Isocitrate lyase (EC 4.1.3.1), group II (plants and fungi)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Malate synthase (EC 2.3.3.9)	TCA_cycle_in_plants	Carbohydrates	Central carbohydrate metabolism
Translation elongation factor P	Experimental-EFP	Experimental Subsystems	
Lysine 2,3-aminomutase (EC 5.4.3.2)	Experimental-EFP	Experimental Subsystems	
Translation elongation factor P Lys34:lysine transferase	Experimental-EFP	Experimental Subsystems	
Translation elongation factor P-related protein	Experimental-EFP	Experimental Subsystems	
Spermidine N1-acetyltransferase (EC 2.3.1.57)	Experimental-EFP	Experimental Subsystems	
Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)	Experimental-EFP	Experimental Subsystems	
Glutamate 5-kinase (EC 2.7.2.11)	Experimental-EFP	Experimental Subsystems	
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Experimental-EFP	Experimental Subsystems	
Transcription termination protein NusB	Experimental-EFP	Experimental Subsystems	
3-dehydroquinate synthase (EC 4.2.3.4)	Experimental-EFP	Experimental Subsystems	
DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31	Experimental-EFP	Experimental Subsystems	
3-dehydroquinate dehydratase II (EC 4.2.1.10)	Experimental-EFP	Experimental Subsystems	
Beta-lysine acetyltransferase (EC 2.3.1.-)	Experimental-EFP	Experimental Subsystems	
DUF2331	Experimental-EFP	Experimental Subsystems	
FKBP-type peptidyl-prolyl cis-trans isomerase	Experimental-EFP	Experimental Subsystems	
Arginine-tRNA-protein transferase (EC 2.3.2.8)	Experimental-EFP	Experimental Subsystems	
Similar to CLH_2181	Experimental-EFP	Experimental Subsystems	
Probable proline-rich protein	Experimental-EFP	Experimental Subsystems	
Monogalactosyldiacylglycerol synthase (EC 2.4.1.46)	June_3_2014_YM_test	Experimental Subsystems	
diacylglyceryl-N,N,N-trimethylhomoserine synthesis protein	June_3_2014_YM_test	Experimental Subsystems	
Digalactosyldiacylglycerol synthase (EC 2.4.1.241)	June_3_2014_YM_test	Experimental Subsystems	
Omega-6 fatty acid desaturase (EC 1.14.19.-)	June_3_2014_YM_test	Experimental Subsystems	
Omega-3 fatty acid desaturase (EC 1.14.19.-)	June_3_2014_YM_test	Experimental Subsystems	
Ethylene-forming 2-oxoglutarate dioxygenase (EC 1.13.12.19) @ 2-oxoglutarate/L-arginine monooxygenase/decarboxylase (succinate-forming) (EC 1.14.11.34)	Ethylene_Biosynthesis	Experimental Subsystems	
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)	acinetobacter_siderophore	Experimental Subsystems	
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase (EC 4.2.1.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase 2 (EC 4.2.1.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Citrate lyase alpha chain (EC 4.1.3.6)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Citrate lyase beta chain (EC 4.1.3.6)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Citrate synthase (si) (EC 2.3.3.1)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class I (EC 4.2.1.2)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class II (EC 4.2.1.2)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Malate dehydrogenase (EC 1.1.1.37)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Malate:quinone oxidoreductase (EC 1.1.5.4)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Transcriptional regulator of succinyl CoA synthetase operon	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase X, predicted	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase large subunit (EC 4.2.1.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
hypothetical protein that often co-occurs with aconitase	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
ATP-citrate (pro-S-)-lyase, subunit 2 (EC 2.3.3.8)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase small subunit (EC 4.2.1.3)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
ATP-citrate (pro-S-) -lyase (EC 2.3.3.8)	acinetobacter_tca	Carbohydrates	Central carbohydrate metabolism
Siderophore synthetase large component, acetyltransferase	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
Siderophore synthetase small component, acetyltransferase	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
Siderophore synthetase component, ligase	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
Siderophore biosynthesis protein, monooxygenase	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
TonB-dependent siderophore receptor	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
Siderophore biosynthesis non-ribosomal peptide synthetase modules	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
ABC-type Fe3+-siderophore transport system, permease component	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
TonB-dependent hemin , ferrichrome receptor	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
TonB-dependent hemin receptor	acinetobacter_siderophore_assembly	Iron acquisition and metabolism	Siderophores
lipid AldH	Cuticular_Lipid_Metabolism	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Cuticular_Lipid_Metabolism	Experimental Subsystems	
Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative	Cuticular_Lipid_Metabolism	Experimental Subsystems	
Arabinose-proton symporter	Cuticular_Lipid_Metabolism	Experimental Subsystems	
Putative glycosyl hydrolase of unknown function (DUF1680)	Cuticular_Lipid_Metabolism	Experimental Subsystems	
putative acyl-CoA dehydrogenase	Cuticular_Lipid_Metabolism	Experimental Subsystems	
AptA	Homophenylalanine_Synthesis	Experimental Subsystems	
AptB	Homophenylalanine_Synthesis	Experimental Subsystems	
AptC	Homophenylalanine_Synthesis	Experimental Subsystems	
AptD	Homophenylalanine_Synthesis	Experimental Subsystems	
AptF	Homophenylalanine_Synthesis	Experimental Subsystems	
HphA 2-benzylmalate synthase	Homophenylalanine_Synthesis	Experimental Subsystems	
HphB 3-benzylmalate dehydrogenase	Homophenylalanine_Synthesis	Experimental Subsystems	
HphCD benzylmalate isomerase	Homophenylalanine_Synthesis	Experimental Subsystems	
2-isopropylmalate synthase (EC 2.3.3.13)	Homophenylalanine_Synthesis	Experimental Subsystems	
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Homophenylalanine_Synthesis	Experimental Subsystems	
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Homophenylalanine_Synthesis	Experimental Subsystems	
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Homophenylalanine_Synthesis	Experimental Subsystems	
Homocitrate synthase (EC 2.3.3.14)	Homophenylalanine_Synthesis	Experimental Subsystems	
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Homophenylalanine_Synthesis	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	Homophenylalanine_Synthesis	Experimental Subsystems	
(R)-citramalate synthase (EC 2.3.1.182)	Homophenylalanine_Synthesis	Experimental Subsystems	
Lycopene cyclase, CruP type	Carotenoid_plant_test	Experimental Subsystems	
Lycopene epsilon cyclase (EC 5.5.1.18)	Carotenoid_plant_test	Experimental Subsystems	
Phytoene synthase (EC 2.5.1.32)	Carotenoid_plant_test	Experimental Subsystems	
Phytoene synthase (EC 2.5.1.32)	Carotenoid	Experimental Subsystems	
15-cis-zeta-carotene isomerase (EC 5.2.1.12)	Carotenoid	Experimental Subsystems	
Pro-zeta-carotene desaturase, prolycopene producing (EC 1.-.-.-)	Carotenoid	Experimental Subsystems	
Lycopene cyclase, CruP type	Carotenoid	Experimental Subsystems	
Lycopene epsilon cyclase (EC 5.5.1.18)	Carotenoid	Experimental Subsystems	
Carotenoid beta-ring hydroxylase (EC 1.14.13.129)	Carotenoid	Experimental Subsystems	
saccharopine dehydrogenase-like protein	Carotenoid	Experimental Subsystems	
cytochrome P450	Carotenoid	Experimental Subsystems	
Protein LUTEIN DEFICIENT 5, chloroplastic (EC 1.14.-.-) (Cytochrome P450 97A3)	Carotenoid	Experimental Subsystems	
Carotene epsilon-monooxygenase, chloroplastic (EC 1.14.99.45) (Cytochrome P450 97C1) (Protein LUTEIN DEFICIENT 1)	Carotenoid	Experimental Subsystems	
Cytochrome P450 97B3, chloroplastic (EC 1.14.-.-)	Carotenoid	Experimental Subsystems	
Violaxanthin de-epoxidase, chloroplastic (AtVxDE) (EC 1.10.99.3) (Protein NON-PHOTOCHEMICAL QUENCHING 1)	Carotenoid	Experimental Subsystems	
abscisic acid (aba)-deficient 4	Carotenoid	Experimental Subsystems	
Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-)	Carotenoid	Experimental Subsystems	
Carotenoid cis-trans isomerase (EC 5.2.-.-)	Carotenoid	Experimental Subsystems	
Lycopene beta cyclase (EC 1.14.-.-)	Carotenoid	Experimental Subsystems	
Lycopene cyclase, CruA type	Carotenoid	Experimental Subsystems	
Beta-carotene ketolase	Carotenoid	Experimental Subsystems	
Proteorhodopsin	Carotenoid	Experimental Subsystems	
ABC transporter associated with Efe, putative substrate binding subunit	Microbial_ethylene_biosynthesis	Miscellaneous	
ABC transporter associated with Efe, putative permease subunit I	Microbial_ethylene_biosynthesis	Miscellaneous	
Ethylene-forming 2-oxoglutarate dioxygenase (EC 1.13.12.19)	Microbial_ethylene_biosynthesis	Miscellaneous	
2-oxoglutarate/L-arginine monooxygenase/decarboxylase (succinate-forming) (EC 1.14.11.34)	Microbial_ethylene_biosynthesis	Miscellaneous	
ABC transporter associated with Efe, ATP-binding subunit	Microbial_ethylene_biosynthesis	Miscellaneous	
ABC transporter associated with Efe, putative permease subunit II	Microbial_ethylene_biosynthesis	Miscellaneous	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Test_Q	RNA Metabolism	RNA processing and modification
Queuosine biosynthesis QueD, PTPS-I	Test_Q	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueE Radical SAM	Test_Q	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueC ATPase	Test_Q	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase (EC 1.7.1.13)	Test_Q	RNA Metabolism	RNA processing and modification
tRNA-guanine transglycosylase (EC 2.4.2.29)	Test_Q	RNA Metabolism	RNA processing and modification
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Test_Q	RNA Metabolism	RNA processing and modification
Putative preQ0 transporter	Test_Q	RNA Metabolism	RNA processing and modification
Permease of the drug/metabolite transporter (DMT) superfamily	Test_Q	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Test_Q	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	Test_Q	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) PUA domain	Test_Q	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase-like	Test_Q	RNA Metabolism	RNA processing and modification
COG2047: Uncharacterized protein (ATP-grasp superfamily)	Test_Q	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2	Test_Q	RNA Metabolism	RNA processing and modification
glutamyl-Q-tRNA synthetase	Test_Q	RNA Metabolism	RNA processing and modification
Epoxyqueuosine (oQ) reductase QueG	Test_Q	RNA Metabolism	RNA processing and modification
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Test_Q	RNA Metabolism	RNA processing and modification
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Test_Q	RNA Metabolism	RNA processing and modification
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	Test_Q	RNA Metabolism	RNA processing and modification
Archaeosine cluster gene X	Test_Q	RNA Metabolism	RNA processing and modification
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Test_Q	RNA Metabolism	RNA processing and modification
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Test_Q	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 short	Test_Q	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like	Test_Q	RNA Metabolism	RNA processing and modification
Glutamine amidotransferases class-II (GATase)	Test_Q	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	Test_Q	RNA Metabolism	RNA processing and modification
Hypothetical protein DUF2419	Test_Q	RNA Metabolism	RNA processing and modification
tRNA-guanine transglycosylase (EC 2.4.2.29)	TGT	Experimental Subsystems	
Auxiliary cluster 2 T6SS effector (DUF2235)	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
N-terminal Lysine motif containing protein	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
VgrG protein	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Hcp	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
VgrG-3 protein	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Type VI secretion-related protein VasL	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpB	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein similar to VCA0109	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Protein ImpG/VasA	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpH/VasB	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpI/VasC	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Type VI secretion lipoprotein/VasD	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpJ/VasE	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Outer membrane protein ImpK/VasF, OmpA/MotB domain	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
ClpB protein	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Sigma-54 dependent transcriptional regulator	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Type VI secretion protein VasI	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpA	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpC	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
IcmF-related protein	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Membrane protein required for pore formation	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpD	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
lipase family protein	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Auxiliary cluster 2 T6SS effector (B)	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Expansion remnant of membrane protein required for pore formation	T6SS_BR	Membrane Transport	Protein secretion system, Type VI
Flagellin protein FlaB	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar biosynthesis protein FliS	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar protein fliO	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar regulatory protein FleQ	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar motor switch protein FliM	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar motor switch protein FliN	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar basal-body rod protein FlgG	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar hook protein FlgE	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellar hook-associated protein FlgK	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
GTP-binding protein HflX	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
RNA-binding protein Hfq	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Outer membrane protein MIP precursor (Macrophage infectivity potentiator) (Peptidyl-prolyl cis-trans isomerase) (EC 5.2.1.8)	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Enhanced entry protein EnhA	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Enhanced entry protein EnhB	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
PvcB protein, related to amino acid oxidizing enzymes	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Cold shock protein CspD	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Cold shock protein CspA	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Cell division protein FtsL	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Cell division protein FtsZ (EC 3.4.24.-)	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
RalF protein, translocated into host cells by the Dot/Icm system	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Transmission trait enhancer protein LetE	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Preprotein translocase subunit SecE (TC 3.A.5.1.1)	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Multidrug resistance efflux pump PmrA	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Copper-sensing two-component system response regulator CpxR	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Copper sensory histidine kinase CpxA	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Sensory box (GGDEF/EAL domain) regulatory protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Carbon storage regulator	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Type IV pilus biogenesis protein PilE	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Effector protein B, substrate of the Dot/Icm secretion system	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Effector protein A, substrate of the Dot/Icm secretion system	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
LidA protein, substrate of the Dot/Icm system	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
IcmR protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
DotC protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
DotA protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
IcmW protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
SdbB protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
SdeD	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
SidC protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11)	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4)	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9)	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Minor pilin of type IV secretion complex (VirB5)	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Type IV secretion system protein VirD4	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
LssZ protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Type I secretion outer membrane protein, TolC precursor	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
N-terminal acetyltransferase, GNAT family	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Phospholipase/lecithinase/hemolysin	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
OmpA-like transmembrane domain protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Legionella vir region protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
SdhA, substrate of the Dot/Icm system	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
IcmS protein	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Type IV pilus (Tfp) assembly protein PilF	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Flagellin protein FlaA	Legionella_pneumophila_Virulome	Virulence, Disease and Defense	
Beta-lactamase AmpS	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Beta-lactamase (EC 3.5.2.6)	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Adenylosuccinate synthetase (EC 6.3.4.4)	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Transcriptional regulator, MecI family	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
DNA gyrase subunit A (EC 5.99.1.3)	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
DNA gyrase subunit B (EC 5.99.1.3)	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Topoisomerase IV subunit B (EC 5.99.1.-)	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
RND efflux system, inner membrane transporter CmeB	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Lipoprotein releasing system ATP-binding protein LolD	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
ABC transporter ATP-binding protein	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Chloramphenicol acetyltransferase (EC 2.3.1.28)	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Aminoglycoside N (6') -acetyltransferase	Legionella_pneumophila_Potential_Resistome	Virulence	Resistance to antibiotics and toxic compounds
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Respiration_/_HGM		
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Respiration_/_HGM		
Anaerobic sulfite reductase subunit A	Respiration_/_HGM		
Anaerobic sulfite reductase subunit B	Respiration_/_HGM		
Anaerobic sulfite reductase subunit C (EC 1.8.1.-)	Respiration_/_HGM		
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Respiration_/_HGM		
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Respiration_/_HGM		
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Respiration_/_HGM		
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Respiration_/_HGM		
Cytochrome d ubiquinol oxidase subunit CydX (EC 1.10.3.-)	Respiration_/_HGM		
Fumarate reductase subunit D	Respiration_/_HGM		
Fumarate reductase subunit C	Respiration_/_HGM		
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Respiration_/_HGM		
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Respiration_/_HGM		
Succinate dehydrogenase cytochrome b-556 subunit	Respiration_/_HGM		
Succinate dehydrogenase hydrophobic membrane anchor protein	Respiration_/_HGM		
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Respiration_/_HGM		
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Respiration_/_HGM		
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	Respiration_/_HGM		
Nitrate/nitrite transporter NarK	Respiration_/_HGM		
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)	Respiration_/_HGM		
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	Respiration_/_HGM		
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	Respiration_/_HGM		
Nitrate ABC transporter, nitrate-binding protein	Respiration_/_HGM		
Nitrate ABC transporter, permease protein	Respiration_/_HGM		
Nitrate ABC transporter, ATP-binding protein	Respiration_/_HGM		
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Respiration_/_HGM		
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Respiration_/_HGM		
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3)	Respiration_/_HGM		
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfE	Respiration_/_HGM		
Anaerobic selenate reductase protein YnfG	Respiration_/_HGM		
Anaerobic selenate reductase protein YnfH	Respiration_/_HGM		
Anaerobic selenate reductase chaperone YnfI	Respiration_/_HGM		
Formate hydrogenlyase subunit 2	Respiration_/_HGM		
Formate hydrogenlyase subunit 3	Respiration_/_HGM		
Formate hydrogenlyase subunit 4	Respiration_/_HGM		
Formate hydrogenlyase subunit 5	Respiration_/_HGM		
Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit	Respiration_/_HGM		
Formate hydrogenlyase subunit 7	Respiration_/_HGM		
Formate hydrogenlyase maturation protein HycH	Respiration_/_HGM		
Hydrogenase 3 maturation protease	Respiration_/_HGM		
Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)	Respiration_/_HGM		
Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)	Respiration_/_HGM		
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	Respiration_/_HGM		
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)	Respiration_/_HGM		
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)	Respiration_/_HGM		
Predicted nitrite reductase [NAD(P)H] large subunit, associated with glutamine/glutamate metabolism	Respiration_/_HGM		
Predicted nitrite reductase [NAD(P)H] small subunit, associated with glutamine/glutamate metabolism	Respiration_/_HGM		
Succinate dehydrogenase cytochrome b subunit	Respiration_/_HGM		
Cytochrome c552 precursor (EC 1.7.2.2)	Respiration_/_HGM		
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly	Respiration_/_HGM		
Cytochrome c nitrite reductase, small subunit NrfH	Respiration_/_HGM		
Cytochrome c-type heme lyase subunit nrfI, nitrite reductase complex assembly	Respiration_/_HGM		
Hypothetical protein CyfX, associated with predicted extracellular microaerobic reductase	Respiration_/_HGM		
Predicted extracellular microaerobic reductase, FeS cluster membrane subunit	Respiration_/_HGM		
Predicted extracellular microaerobic reductase, catalytic and thiol-binding subunit	Respiration_/_HGM		
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Respiration_/_HGM		
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Respiration_/_HGM		
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Respiration_/_HGM		
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Respiration_/_HGM		
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Respiration_/_HGM		
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	Respiration_/_HGM		
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	Respiration_/_HGM		
Fumarate reductase cytochrome b subunit	Respiration_/_HGM		
polysulfide reductase, subunit A	Respiration_/_HGM		
polysulfide reductase, subunit B	Respiration_/_HGM		
polysulfide reductase, subunit C	Respiration_/_HGM		
FIG00639295: hypothetical protein	Respiration_/_HGM		
Uncharacterized cytochrome b-like protein YdhU	Respiration_/_HGM		
Uncharacterized ferredoxin-like protein YdhX	Respiration_/_HGM		
FIG00637966: hypothetical protein	Respiration_/_HGM		
Molybdopterin-containing protein YdhV, similar to aldehyde:ferredoxin oxidoreductase	Respiration_/_HGM		
Putative oxidoreductase, Fe-S subunit YdhY	Respiration_/_HGM		
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Respiration_/_HGM		
Nitrate reductase cytochrome c550-type subunit	Respiration_/_HGM		
Cytochrome c-type protein NapC	Respiration_/_HGM		
Polyferredoxin NapH (periplasmic nitrate reductase)	Respiration_/_HGM		
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Respiration_/_HGM		
Ferredoxin-type protein NapF (periplasmic nitrate reductase)	Respiration_/_HGM		
Nitrite transporter NirC	Respiration_/_HGM		
Cytochrome c-type protein NrfB precursor	Respiration_/_HGM		
NrfC protein	Respiration_/_HGM		
NrfD protein	Respiration_/_HGM		
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly	Respiration_/_HGM		
Cytochrome c-type protein TorC	Respiration_/_HGM		
Trimethylamine-N-oxide reductase (EC 1.6.6.9), TorA	Respiration_/_HGM		
Functional role page for Chaperone protein TorD	Respiration_/_HGM		
Tetrathionate reductase subunit A	Respiration_/_HGM		
Tetrathionate reductase subunit C	Respiration_/_HGM		
Thiosulfate reductase precursor (EC 1.-.-.-)	Respiration_/_HGM		
Thiosulfate reductase electron transport protein phsB	Respiration_/_HGM		
Thiosulfate reductase cytochrome B subunit	Respiration_/_HGM		
Similar to carbon monoxide dehydrogenase CooS subunit, associated with nitrite assimilation	Respiration_/_HGM		
Predicted anaerobic reductase, FAD binding subunit	Respiration_/_HGM		
Predicted anaerobic reductase, molybdopterin-binding subunit	Respiration_/_HGM		
Predicted anaerobic reductase, iron-sulfur binding	Respiration_/_HGM		
Anaerobic dimethyl sulfoxide reductase chaperone DmsD	Respiration_/_HGM		
Anaerobic dimethyl sulfoxide reductase, integral membrane protein, NrfD-like	Respiration_/_HGM		
Predicted anaerobic reductase, anchor subunit	Respiration_/_HGM		
Predicted anaerobic reductase, chaperone	Respiration_/_HGM		
Predicted anaerobic reductase, polyferredoxin	Respiration_/_HGM		
Ferredoxin-type protein, NapF-like	Respiration_/_HGM		
Energy-conserving hydrogenase (ferredoxin), subunit A	Respiration_/_HGM		
Energy-conserving hydrogenase (ferredoxin), subunit B	Respiration_/_HGM		
Energy-conserving hydrogenase (ferredoxin), subunit C	Respiration_/_HGM		
Energy-conserving hydrogenase (ferredoxin), subunit D	Respiration_/_HGM		
Energy-conserving hydrogenase (ferredoxin), subunit E	Respiration_/_HGM		
Energy-conserving hydrogenase (ferredoxin), subunit F	Respiration_/_HGM		
Nitrate/nitrite transporter NasA	Respiration_/_HGM		
Predicted extracellular microaerobic reductase, flavin-binding subunit	Respiration_/_HGM		
Predicted extracellular microaerobic reductase, anchor subunit	Respiration_/_HGM		
Hypothetical protein, associated with Ydh genes, FMN binding	Respiration_/_HGM		
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	Respiration_/_HGM		
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Respiration_/_HGM		
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Respiration_/_HGM		
Periplasmic nitrate reductase component NapE	Respiration_/_HGM		
Copper-containing nitrite reductase (EC 1.7.2.1)	Respiration_/_HGM		
Nitric-oxide reductase subunit B (EC 1.7.99.7)	Respiration_/_HGM		
Nitrous-oxide reductase (EC 1.7.99.6)	Respiration_/_HGM		
Nitrous oxide reductase maturation protein NosR	Respiration_/_HGM		
Nitrous oxide reductase maturation protein NosD	Respiration_/_HGM		
Nitrous oxide reductase maturation protein NosF (ATPase)	Respiration_/_HGM		
Nitrous oxide reductase maturation transmembrane protein NosY	Respiration_/_HGM		
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Respiration_/_HGM		
Succinate dehydrogenase cytochrome b558 subunit	Respiration_/_HGM		
Anaerobic dimethyl sulfoxide reductase associated ferredoxin, NapF-like	Respiration_/_HGM		
Trimethylamine-N-oxide reductase (EC 1.6.6.9), iron-sulfur binding subunit	Respiration_/_HGM		
Dissimilatory sulfite reductase, alpha subunit (EC 1.8.99.3)	Respiration_/_HGM		
Dissimilatory sulfite reductase, beta subunit (EC 1.8.99.3)	Respiration_/_HGM		
Sulfite reduction-associated complex DsrMKJOP iron-sulfur protein DsrO (=HmeA)	Respiration_/_HGM		
Sulfite reduction-associated complex DsrMKJOP protein DsrM (= HmeC)	Respiration_/_HGM		
Sulfite reduction-associated complex DsrMKJOP protein DsrK (=HmeD)	Respiration_/_HGM		
Sulfite reduction-associated complex DsrMKJOP multiheme protein DsrJ (=HmeF)	Respiration_/_HGM		
Integral membrane protein, NrfD-like	Respiration_/_HGM		
Hydrogenase-4 component A	Respiration_/_HGM		
Hydrogenase-4 component B	Respiration_/_HGM		
Hydrogenase-4 component C	Respiration_/_HGM		
Hydrogenase-4 component D	Respiration_/_HGM		
Hydrogenase-4 component E	Respiration_/_HGM		
Hydrogenase-4 component F	Respiration_/_HGM		
Hydrogenase-4 component G	Respiration_/_HGM		
Hydrogenase-4 component H	Respiration_/_HGM		
Hydrogenase-4 component I	Respiration_/_HGM		
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly	Respiration_/_HGM		
periplasmic diheme c-type cytochrome, NapB	Respiration_/_HGM		
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfF	Respiration_/_HGM		
Predicted cytochrome C, associated with Ydh genes	Respiration_/_HGM		
Hypothetical protein YdhZ	Respiration_/_HGM		
NrfD-like protein, associated with Ydh genes	Respiration_/_HGM		
Anaerobic dimethyl sulfoxide reductase associated 4Fe-4S dicluster protein, NapG-like	Respiration_/_HGM		
Putative succinate dehydrogenase cytochrome b subunit	Respiration_/_HGM		
Respiratory arsenate reductase, Mo binding subunit (ArrA)	Respiration_/_HGM		
Respiratory arsentate reductase, FeS subunit (ArrB)	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase maturation protein TsrH	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase maturation protein TsrI (ATPase)	Respiration_/_HGM		
Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ	Respiration_/_HGM		
Anaerobic arsenite oxidase ArxA	Respiration_/_HGM		
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein ArxB	Respiration_/_HGM		
NrfD-family membrane protein ArxC	Respiration_/_HGM		
Predicted nitrate/nitrite antiporter	Respiration_/_HGM		
NapM protein	Respiration_/_HGM		
Sulfite reduction-associated complex DsrMKJOP protein DsrP (= HmeB)	Respiration_/_HGM		
Carbon monoxide-induced hydrogenase membrane protein CooM	Respiration_/_HGM		
Carbon monoxide-induced hydrogenase proton translocating subunit CooK	Respiration_/_HGM		
Carbon monoxide-induced hydrogenase small subunit CooL	Respiration_/_HGM		
Carbon monoxide-induced hydrogenase iron-sulfur protein CooX	Respiration_/_HGM		
Carbon monoxide-induced hydrogenase NuoC-like protein CooU	Respiration_/_HGM		
Carbon monoxide-induced hydrogenase large subunit CooH	Respiration_/_HGM		
Membrane bound hydrogenase, MbhA subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhB subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhC subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhD subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhE subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhF subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhG subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhH subunit	Respiration_/_HGM		
Membrane bound hydrogenase, MbhI subunit	Respiration_/_HGM		
Membrane bound hydrogenase, NiFe-hydrogenase small subunit	Respiration_/_HGM		
Energy-conserving [NiFe] hydrogenase (ferredoxin) beta subunit	Respiration_/_HGM		
Membrane bound hydrogenase, NiFe-hydrogenase large subunit (EC 1.12.7.2)	Respiration_/_HGM		
Membrane bound hydrogenase, MbhM subunit (EC 1.12.7.2)	Respiration_/_HGM		
Membrane bound hydrogenase, 4Fe-4S cluster-binding subunit	Respiration_/_HGM		
Hydrogenase-4 component J	Respiration_/_HGM		
AA3-600 quinol oxidase subunit IIII	Respiration_/_HGM		
AA3-600 quinol oxidase subunit IV	Respiration_/_HGM		
AA3-600 quinol oxidase subunit I	Respiration_/_HGM		
AA3-600 quinol oxidase subunit II	Respiration_/_HGM		
Dissimilatory sulfite reductase D	Respiration_/_HGM		
Adenylylsulfate reductase-associated complex QmoABC, protein QmoA	Respiration_/_HGM		
Adenylylsulfate reductase-associated complex QmoABC, protein QmoB	Respiration_/_HGM		
Adenylylsulfate reductase-associated complex QmoABC, protein QmoC	Respiration_/_HGM		
Cytochrome c oxidase, subunit IV (EC 1.9.3.1)	Respiration_/_HGM		
CtaG protein	Respiration_/_HGM		
Menaquinone-cytochrome C reductase iron-sulfur subunit	Respiration_/_HGM		
Menaquinone-cytochrome c reductase, cytochrome B subunit	Respiration_/_HGM		
Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit	Respiration_/_HGM		
Glutamate--cysteine ligase EgtA	Ergothioneine_Cyano	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ergothioneine biosynthesis protein EgtB	Ergothioneine_Cyano	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ergothioneine biosynthesis protein EgtC	Ergothioneine_Cyano	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Dimethylhistidine N-methyltransferase (EC 2.1.1.44)	Ergothioneine_Cyano	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ergothioneine biosynthesis PLP enzyme EgtE	Ergothioneine_Cyano	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glutathione synthetase (EC 6.3.2.3)	Ergothioneine_Cyano	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	DUF1731	Experimental Subsystems	
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	DUF1731	Experimental Subsystems	
Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains	DUF1731	Experimental Subsystems	
Cell division inhibitor	DUF1731	Experimental Subsystems	
Short-chain dehydrogenase/reductase SDR	DUF1731	Experimental Subsystems	
Sensor histidine kinase PhoQ (EC 2.7.13.3)	DUF1731	Experimental Subsystems	
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)	DUF1731	Experimental Subsystems	
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)	DUF1731	Experimental Subsystems	
Dihydroneopterin triphosphate epimerase	DUF1731	Experimental Subsystems	
Probable glutathione S-transferase (EC 2.5.1.18), YfcG homolog	DUF1731	Experimental Subsystems	
Putative Nudix hydrolase YfcD (EC 3.6.-.-)	DUF1731	Experimental Subsystems	
Putative NAD(P)-dependent oxidoreductase EC-YbbO	DUF1731	Experimental Subsystems	
Maltose maltodextrin transport ATP-binding protein malK	DUF1731	Experimental Subsystems	
Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog	DUF1731	Experimental Subsystems	
FIG002292: Phosphodiesterase yfcE (EC 3.1.4.-)	DUF1731	Experimental Subsystems	
conserved hypothetical protein [Pyrococcus horikoshii] COG2102: Predicted ATPases of PP-loop superfamily IPR002761: Domain of unknown function DUF71: B12 cluster	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Queuosine Biosynthesis QueC ATPase	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duf71: Diphthamide synthesis Dph6	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, ATPase component BtuD	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
AMP nucleosidase (EC 3.2.2.4)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Choline kinase (EC 2.7.1.32)	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG01199686: hypothetical protein	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	CbiZ_Main	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
N-carbamoylsarcosine amidase (EC 3.5.1.59)	CbiZ_doings	Experimental Subsystems	
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	CbiZ_doings	Experimental Subsystems	
Cyanuric acid amidohydrolase (EC 3.5.2.15)	CbiZ_doings	Experimental Subsystems	
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	DprA	Experimental Subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	DprA	Experimental Subsystems	
DNA topoisomerase I (EC 5.99.1.2)	DprA	Experimental Subsystems	
Ribonuclease HII (EC 3.1.26.4)	DprA	Experimental Subsystems	
Possible purine/pyrimidine phosphoribosyltransferase	DprA	Experimental Subsystems	
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	DprA	Experimental Subsystems	
Site-specific tyrosine recombinase XerC	DprA	Experimental Subsystems	
Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains	DprA	Experimental Subsystems	
tRNA:m(5)U-54 MTase gid	DprA	Experimental Subsystems	
SMF family protein, DNA processing chain A (DprA)	DprA	Experimental Subsystems	
COG1537: Predicted RNA-binding proteins	Pelota	Experimental Subsystems	
Uncharacterized protein SSO0086	Pelota	Experimental Subsystems	
Translation elongation factor 1 alpha subunit	Pelota	Experimental Subsystems	
Ribonuclease P protein component 2 (EC 3.1.26.5)	Pelota	Experimental Subsystems	
COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP	Pelota	Experimental Subsystems	
histone acetyltransferase, ELP3 family	Pelota	Experimental Subsystems	
Hypothetical ATP-binding protein, containing DUF265 domain	Pelota	Experimental Subsystems	
Shwachman-Bodian-Diamond syndrome protein; predicted exosome subunit	Pelota	Experimental Subsystems	
Pelota/DOM34 protein, unknown function in translation	Pelota	Experimental Subsystems	
WD40 repeat-containing protein	Pelota	Experimental Subsystems	
Pelota homolog	Pelota	Experimental Subsystems	
HBS1 protein	Pelota	Experimental Subsystems	
cell division protein PELOTA	Pelota	Experimental Subsystems	
Cytochrome cd1 nitrite reductase (EC:1.7.2.1)	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme d1 biosynthesis protein NirJ	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme d1 biosynthesis protein NirF	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme d1 biosynthesis protein NirD	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme d1 biosynthesis protein NirG	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme d1 biosynthesis protein NirL	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme d1 biosynthesis protein NirH	Heme_and_heme_d1_biosynthesis_from_siroheme		
Radical SAM heme biosynthesis protein AhbC, 12,18-didecarboxysirohaem deacetylase	Heme_and_heme_d1_biosynthesis_from_siroheme		
Radical SAM heme biosynthesis protein AhbD, Fe-coproporphyrin III decarboxylase	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme biosynthesis protein related to NirD	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme biosynthesis protein related to NirG	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme biosynthesis protein related to NirL	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme biosynthesis protein related to NirH	Heme_and_heme_d1_biosynthesis_from_siroheme		
Siroheme decarboxylase AhbA, alternate heme biosynthesis pathway	Heme_and_heme_d1_biosynthesis_from_siroheme		
Siroheme decarboxylase AhbB, alternate heme biosynthesis pathway	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme biosynthesis protein related to NirD and NirG	Heme_and_heme_d1_biosynthesis_from_siroheme		
Heme biosynthesis protein related to NirL and NirH	Heme_and_heme_d1_biosynthesis_from_siroheme		
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)	Glutaconate_CoA-transferase_or_3-oxoadipate_CoA-transferase_Subunits		
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)	Glutaconate_CoA-transferase_or_3-oxoadipate_CoA-transferase_Subunits		
Glutaconate CoA-transferase subunit A (EC 2.8.3.12)	Glutaconate_CoA-transferase_or_3-oxoadipate_CoA-transferase_Subunits		
Glutaconate CoA-transferase subunit B (EC 2.8.3.12)	Glutaconate_CoA-transferase_or_3-oxoadipate_CoA-transferase_Subunits		
Polyprenyl-phospho-N-acetylgalactosaminyl synthase PpgS	Galactosamine_Substituent_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Membrane protein Rv3632, enhances catalytic activity of PpgS	Galactosamine_Substituent_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Lipid-linked-N-acetylgalactosamine-dependent galactosamine transferase, involved in arabinogalactan modification	Galactosamine_Substituent_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Anthranilate synthase, aminase component (EC 4.1.3.27)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Tryptophan synthase alpha chain (EC 4.2.1.20)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Tryptophan synthase beta chain (EC 4.2.1.20)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase II (EC 3.5.4.25)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminodeoxychorismate lyase (EC 4.1.3.38)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate reductase (EC 1.5.1.3)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
3-dehydroquinate synthase (EC 4.2.3.4)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Isochorismate synthase (EC 5.4.4.2)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
3-dehydroquinate dehydratase I (EC 4.2.1.10)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Isochorismate pyruvate-lyase (EC 4.-.-.-)	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative Folylglutamate Synthase	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative para-aminobenzoate biosynthesis enzyme CT610	Folate_Tryp_Chlamydiae	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Transaldolase (EC 2.2.1.2)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Dihydroneopterin triphosphate epimerase	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Folylpolyglutamate synthase (EC 6.3.2.17)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Dihydrofolate synthase (EC 6.3.2.12)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Aminodeoxychorismate lyase (EC 4.1.3.38)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Dihydroneopterin triphosphate pyrophosphohydolase type 2	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Related to Dihydropteroate synthase	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Folate biosynthesis, PTPS-III	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Alternative dihydrofolate reductase 3	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Alternative dihydrofolate reductase 2	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Alternative Folylglutamate Synthase	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Putative DHNTP pyrophosphatase	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Non functional Dihydropteroate synthase 2	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Dihydroneopterin triphosphate pyrophosphohydolase	Folate_Biosynthesis_(Phoenix_copy)_	Experimental Subsystems	
Glutamyl-tRNA reductase (EC 1.2.1.70)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen synthase (EC 4.2.1.24)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen deaminase (EC 2.5.1.61)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase (EC 4.2.1.75)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Precorrin-2 oxidase (EC 1.3.1.76)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
MG(2+) CHELATASE FAMILY PROTEIN	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protein of unknown function DUF414	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Fe-S protein, homolog of lactate dehydrogenase SO1521	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG143828: Hypothetical protein YbgA	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative cytochrome C-type biogenesis protein	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Ribonuclease D (EC 3.1.26.3)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sua5 YciO YrdC YwlC family protein	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG000605: protein co-occurring with transport systems (COG1739)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cytochrome c-type biogenesis protein CcsA/ResC	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized protein, homolog of B.subtilis yhgC	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized protein UPF0344	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein, ydbT homolog	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein, ydbS homolog	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cytoplasmic hypothetical protein DUF199	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
oxidoreductase of aldo/keto reductase family, subgroup 1	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical ATP-binding protein UPF0042, contains P-loop	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
YjbH-like, GTP pyrophosphokinase domain	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative nitroreductase family protein SACOL0874	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative acetyl esterase YjcH (EC 3.1.1.-)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
2H phosphoesterase superfamily protein Bsu1186 (yjcG)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
GNAT family acetyltransferase YjcF	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, YtcI homolog	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative lipoprotein SAV1865	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein SAV1869	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
DUF1801 domain-containing protein	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
oxidoreductase of aldo/keto reductase family, subgroup 2	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cytoplasmic hypothetical protein DUF199, a subgroup	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5-aminolevulinate synthase (EC 2.3.1.37)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
COG3118: Thioredoxin domain-containing protein EC-YbbN	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical radical SAM family enzyme in interesting gene cluster	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical protein SAV1831	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized protein Q1 colocalized with Q	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative membrane protein Q2 colocalized with Q	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
transmembrane protein, distant homology with ydbS	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
transmembrane protein, distant homology with ydbT	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Periplasmic/membrane protein associated with DUF414	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative oxidoreductase ferredoxin-type protein, clusters with CPO	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Membrane protein 2, distant similarity to thiosulphate:quinone oxidoreductase DoxD	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
thiol:disulfide interchange protein (dsbC), putative	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical, related to broad specificity phosphatases COG0406	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Methyltransferase (EC 2.1.1.-) colocalized with Q	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Possibly related to ydbT	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Small hypothetical protein Hyp1	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Homolog of E. coli HemY protein	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75)	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized SAV1743 homolog	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative 2	Experimental_tye	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii] COG2102: Predicted ATPases of PP-loop superfamily IPR002761: Domain of unknown function DUF71: B12 cluster	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Queuosine Biosynthesis QueC ATPase	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duf71: Diphthamide synthesis Dph6	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, ATPase component BtuD	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
AMP nucleosidase (EC 3.2.2.4)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Choline kinase (EC 2.7.1.32)	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG01199686: hypothetical protein	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	CbiZ_Main_I	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
2-aminophenol-1,6-dioxygenase, alpha subunit (EC 1.13.11.n1)	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
2-aminophenol 1,6-dioxygenase, beta subunit (EC 1.13.11.n1)	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
2-aminomuconate semialdehyde dehydrogenase (EC 1.2.1.32)	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
2-aminomuconate deaminase (EC 3.5.99.5)	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
4-oxalocrotonate decarboxylase (EC 4.1.1.77)	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
2-keto-4-pentenoate hydratase (EC 4.2.1.80)	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
RidA/YER057c/UK114 superfamily protein	2-aminophenol_Metabolism	Metabolism of Aromatic Compounds	
Serine hydroxymethyltransferase (EC 2.1.2.1)	Ernst_RidA_OC	Experimental Subsystems	
RidA/YER057c/UK114 superfamily protein	Ernst_RidA_OC	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	Ernst_RidA_OC	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 1	Ernst_RidA_OC	Experimental Subsystems	
Orotate phosphoribosyltransferase (EC 2.4.2.10)	RidA_TN	Experimental Subsystems	
Carbamate kinase (EC 2.7.2.2)	RidA_TN	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	RidA_TN	Experimental Subsystems	
Arginine deiminase (EC 3.5.3.6)	RidA_TN	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	RidA_TN	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	RidA_TN	Experimental Subsystems	
Dihydroorotase (EC 3.5.2.3)	RidA_TN	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	RidA_TN	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	RidA_TN	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	RidA_TN	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	RidA_TN	Experimental Subsystems	
Cyanate hydratase (EC 4.2.1.104)	RidA_TN	Experimental Subsystems	
pyridoxal phosphate-dependent deaminase, putative	RidA_TN	Experimental Subsystems	
RidA/YER057c/UK114 superfamily protein	RidA_TN	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	RidA_TN	Experimental Subsystems	
Tryptophan synthase alpha chain (EC 4.2.1.20)	Source	Experimental Subsystems	
Tryptophan synthase beta chain (EC 4.2.1.20)	Source	Experimental Subsystems	
RidA/YER057c/UK114 superfamily protein	Source	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	Source	Experimental Subsystems	
Cysteine synthase B (EC 2.5.1.47)	Source	Experimental Subsystems	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	Source	Experimental Subsystems	
Diaminopropionate ammonia-lyase (EC 4.3.1.15)	Source	Experimental Subsystems	
Nitrogen regulatory protein P-II	PII_superfamily	Autotrophy	
Glutamine synthetase type I (EC 6.3.1.2)	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Nitrogen regulatory protein P-II	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Nitrogen regulatory protein PII	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Cobalt-zinc-cadmium resistance protein CzcA	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Cation efflux system protein CusA	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
putative sodium-dependent bicarbonate transporter	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Sensory subunit of low CO2-induced protein complex, putative	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Heavy metal RND efflux outer membrane protein, CzcC family	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
glutamine synthetase family protein	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2)	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase (EC 6.3.1.2), putative	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase, clostridia type (EC 6.3.1.2)	PII_Superfamily	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Homocitrate synthase (EC 2.3.3.14)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Iron-sulfur cluster assembly scaffold protein NifU	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
NifM protein	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
NifT protein	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
NifZ protein	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor carrier protein NifX	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
4Fe-4S ferredoxin, nitrogenase-associated	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Cysteine desulfurase (EC 2.8.1.7)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
NifX-associated protein	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase stabilizing/protective protein NifW	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
AnfO protein, required for Mo- and V-independent nitrogenase	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
NifB-domain protein, type 2	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (iron-iron) alpha chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (iron-iron) beta chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (iron-iron) delta chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (iron-iron) reductase and maturation protein AnfH	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) alpha chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) beta chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) delta chain (EC 1.18.6.1)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfE	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfN	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Transcriptional repressor of nif and glnA operons	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
AnfR protein, required for Mo- and V-independent nitrogenase	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
NifY protein	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (iron-iron) transcriptional regulator	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) reductase and maturation protein VnfH	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase (vanadium-iron) transcriptional regulator VnfA	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase cofactor carrier protein NafY	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfX	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase vanadium-cofactor synthesis protein VnfY	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Nitrogenase-associated protein NifO	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
probable iron binding protein from the HesB_IscA_SufA family in Nif operon	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Homocitrate synthase alpha subunit (EC 2.3.3.14)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
Homocitrate synthase omega subunit (EC 2.3.3.14)	Nitrogen_Fixation_with_NifL	Nitrogen Metabolism	
L-lactate dehydrogenase (EC 1.1.2.3)	Lactate_utilization_temp	Carbohydrates	Organic acids
D-Lactate dehydrogenase (EC 1.1.2.5)	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Lactate_utilization_temp	Carbohydrates	Organic acids
L-lactate permease	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing	Lactate_utilization_temp	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Enterobacteria, GntR family	Lactate_utilization_temp	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Firmicutes, GntR family	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, hypothetical protein subunit SO1518	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted Lactate-responsive regulator, IclR family	Lactate_utilization_temp	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Betaproteobacteria, LysR family	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted Lactate-responsive regulator, LysR family	Lactate_utilization_temp	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Actinobacteria, GntR family	Lactate_utilization_temp	Carbohydrates	Organic acids
Predicted lactate-responsive transcriptional regulator of ykgEFG LDH gene cluster, LysR-type	Lactate_utilization_temp	Carbohydrates	Organic acids
Biotin carboxyl carrier protein	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
NAD-dependent malic enzyme (EC 1.1.1.38)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Pyruvate carboxylase (EC 6.4.1.1)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate decarboxylase (EC 4.1.1.71)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
D-malic enzyme (EC 1.1.1.83)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Malate Na(+) symporter	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
NADP-dependent malic enzyme (EC 1.1.1.40)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Pyruvate-utilizing enzyme, similar to phosphoenolpyruvate synthase	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Two-component response regulator, malate (EC 2.7.3.-)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Two-component sensor histidine kinase, malate (EC 2.7.3.-)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase involved in citrate fermentation (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP_in_Mycobacteria	Carbohydrates	Central carbohydrate metabolism
ATPase component CbiO of energizing module of cobalt ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Additional substrate-specific component CbiN of cobalt ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein CbiG	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamine-related hypothetical metal-binding protein CrdX	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-3b C17-methyltransferase	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6 synthase, anaerobic	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyric acid synthase (EC 6.3.5.10)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyrinic acid A,C-diamide synthase	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CbiM of cobalt ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Threonine kinase in B12 biosynthesis	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Transmembrane component CbiQ of energizing module of cobalt ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, ATPase component BtuD	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(II)alamin reductase	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CbrT of predicted cobalamin ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt ABC transporter periplasmic component	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5,6-dimethylbenzimidazole synthase, flavin destructase family	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
HoxN/HupN/NixA family cobalt transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter CbtA	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ChlD component of cobalt chelatase involved in B12 biosynthesis	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ChlI component of cobalt chelatase involved in B12 biosynthesis	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CobN component of cobalt chelatase involved in B12 biosynthesis	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Thermoplasma	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein CobG	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Precorrin-6A synthase (EC 2.1.1.152)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Mycobacteria	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Optional hypothetical component of the B12 transporter BtuN	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Bacteroides_Porphyromonas	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CobW GTPase involved in cobalt insertion for B12 biosynthesis	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
HupE-UreJ family cobalt transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2)	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CblX, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CblY, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter CbtC	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Optional hypothetical component of the B12 transporter BtuM	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Additional lipoprotein component of predicted cobalamin ECF transporter	B12_Biosynthesis_(Tavares_copy1)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Citrate lyase beta chain (EC 4.1.3.6)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Citrate lyase alpha chain (EC 4.1.3.6)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Malate dehydrogenase (EC 1.1.1.37)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Sensor kinase CitA, DpiB (EC 2.7.3.-)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Transcriptional regulatory protein CitB, DpiA	Citrate_Metabolism_KE	Carbohydrates	Organic acids
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (EC 2.7.8.25)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Citrate Succinate antiporter (TC 2.A.47.3.2)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Transaldolase (EC 2.2.1.2)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Pyruvate carboxylase (EC 6.4.1.1)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Mg(2+) Citrate transporter (TC 2.A.11.1.1)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Ca(2+) Citrate symporter (TC 2.A.11.1.2)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Oxaloacetate decarboxylase involved in citrate fermentation (EC 4.1.1.3)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Citrate lyase transcriptional regulator CitI	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Na(+)Citrate OH(-) antiporter	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Immune-responsive protein 1	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Anaerobic C4-dicarboxylate transporter DcuC	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	Citrate_Metabolism_KE	Carbohydrates	Organic acids
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) / Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Citrate_Metabolism_KE	Carbohydrates	Organic acids
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	5-FCL-like-OF	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5-FCL-like protein	5-FCL-like-OF	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	5-FCL-like-OF	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL)	5-FCL-like-OF	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
UDP-glucose 4-epimerase (EC 5.1.3.2)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
UDP-galactopyranose mutase (EC 5.4.99.9)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Integral membrane indolylacetylinositol arabinosyltransferase EmbC (EC 2.4.2.-)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Integral membrane indolylacetylinositol arabinosyltransferase EmbA (EC 2.4.2.-)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Integral membrane indolylacetylinositol arabinosyltransferase EmbB (EC 2.4.2.-)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
UDP-galactofuranosyl transferase GlfT1 (EC 2.4.1.287), catalyzes initiation of cell wall galactan polymerization	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Bifunctional beta-1,5/1,6-galactofuranosyltransferase GlfT2 in cell wall galactan polymerization (EC 2.4.1.288)	linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	Cell wall of Mycobacteria
Uncharacterized protein COG3236	COG3236-small	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	COG3236-small	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	COG3236-small	Experimental Subsystems	
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	COG3236-small	Experimental Subsystems	
ADP-ribosylglycohydrolase	COG3236-small	Experimental Subsystems	
RNA:NAD 2'-phosphotransferase	COG3236-small	Experimental Subsystems	
NAD-dependent protein deacetylase of SIR2 family	NAD_consumption	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
DNA ligase (EC 6.5.1.2)	NAD_consumption	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Mono(ADP-ribosyl)transferase SpvB (EC 2.4.2.31)	NAD_consumption	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Lipoprotein	test	Experimental Subsystems	
Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex	test	Experimental Subsystems	
Aspartate 1-decarboxylase (EC 4.1.1.11)	CoA_Test		
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	CoA_Test		
Ketol-acid reductoisomerase (EC 1.1.1.86)	CoA_Test		
Pantoate--beta-alanine ligase (EC 6.3.2.1)	CoA_Test		
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	CoA_Test		
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	CoA_Test		
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	CoA_Test		
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	CoA_Test		
Dephospho-CoA kinase (EC 2.7.1.24)	CoA_Test		
Enolase (EC 4.2.1.11)	CoA_Test		
2-dehydropantoate 2-reductase (EC 1.1.1.169)	CoA_Test		
Pantothenate kinase (EC 2.7.1.33)	CoA_Test		
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	CoA_Test		
Substrate-specific component PanT of predicted pantothenate ECF transporter	CoA_Test		
Phosphopantetheine adenylyltransferase, type II eukaryotic (EC 2.7.7.3)	CoA_Test		
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	CoA_Test		
Pantoate kinase, archaeal (EC 2.7.1.-)	CoA_Test		
Phosphopantothenate synthetase, archaeal	CoA_Test		
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	CoA_Test		
Uncharacterized protein, contains DUF1788 domain	Uncharacterized_gene_cluster_sporadically_distributed_in_bacteria_and_archaea	Clustering-based subsystems	
Uncharacterized protein sporadically distributed in bacteria and archaea (STM4496 in Salmonella)	Uncharacterized_gene_cluster_sporadically_distributed_in_bacteria_and_archaea	Clustering-based subsystems	
Type II restriction-modification enzyme, methylase family protein (STM4495 in Salmonella)	Uncharacterized_gene_cluster_sporadically_distributed_in_bacteria_and_archaea	Clustering-based subsystems	
Uncharacterized protein sporadically distributed in bacteria and archaea, PglZ domain	Uncharacterized_gene_cluster_sporadically_distributed_in_bacteria_and_archaea	Clustering-based subsystems	
Uncharacterized protein sporadically distributed in bacteria and archaea, not a Lon-type protease	Uncharacterized_gene_cluster_sporadically_distributed_in_bacteria_and_archaea	Clustering-based subsystems	
Putative inner membrane protein, DUF1819 superfamily	Uncharacterized_gene_cluster_sporadically_distributed_in_bacteria_and_archaea	Clustering-based subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	yrdC	Experimental Subsystems	
Hypothetical YciO protein, TsaC/YrdC paralog	yrdC	Experimental Subsystems	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	yrdC	Experimental Subsystems	
Peptide chain release factor 1	yrdC	Experimental Subsystems	
Peptide chain release factor 2; programmed frameshift-containing	yrdC	Experimental Subsystems	
Peptide chain release factor 3	yrdC	Experimental Subsystems	
Hypothetical protein YaeJ with similarity to translation release factor	yrdC	Experimental Subsystems	
YaeQ protein	yrdC	Experimental Subsystems	
COG1720: Uncharacterized conserved protein	yrdC	Experimental Subsystems	
Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	yrdC	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	yrdC	Experimental Subsystems	
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	yrdC	Experimental Subsystems	
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	yrdC	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	yrdC	Experimental Subsystems	
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	yrdC	Experimental Subsystems	
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	yrdC	Experimental Subsystems	
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase (EC 2.1.1.55)	yrdC	Experimental Subsystems	
Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA	yrdC	Experimental Subsystems	
S-adenosylmethionine-dependent methyltransferase YaeB	yrdC	Experimental Subsystems	
phosphoribosyltransferase	yrdC	Experimental Subsystems	
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NADH-dependent_reduced_ferredoxin:NADDP+_oxidoreductase	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Electron transfer flavoprotein, alpha subunit	NADH-dependent_reduced_ferredoxin:NADDP+_oxidoreductase	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Electron transfer flavoprotein, beta subunit	NADH-dependent_reduced_ferredoxin:NADDP+_oxidoreductase	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	NADH-dependent_reduced_ferredoxin:NADDP+_oxidoreductase	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NADH-dependent reduced ferredoxin:NADP+ oxidoreductase subunit B	NADH-dependent_reduced_ferredoxin:NADDP+_oxidoreductase	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Butyryl-CoA dehydrogenase (EC 1.3.8.1)	NADH-dependent_reduced_ferredoxin:NADDP+_oxidoreductase	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NADH-dependent reduced ferredoxin:NADDP+ oxidoreductase subunit A	NADH-dependent_reduced_ferredoxin:NADDP+_oxidoreductase	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyric acid synthase (EC 6.3.5.10)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CbiM of cobalt ECF transporter	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Additional substrate-specific component CbiN of cobalt ECF transporter	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ATPase component CbiO of energizing module of cobalt ECF transporter	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, ATPase component BtuD	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-5B (C1)-methyltransferase (EC 2.1.1.195)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-7 (C5)-methyltransferase (EC 2.1.1.289)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6B C15-methyltransferase [decarboxylating] (EC 2.1.1.196)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-3b C17-methyltransferase (EC 2.1.1.131)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6A reductase (EC 1.3.1.54)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Transmembrane component CbiQ of energizing module of cobalt ECF transporter	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase (EC 2.7.8.26)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Cobalamin_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Lipid-linked-N-acetylgalactosamine-dependent galactosamine transferase, involved in arabinogalactan modification	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
UDP-galactofuranosyl transferase GlfT1 (EC 2.4.1.287), catalyzes initiation of cell wall galactan polymerization	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Decaprenyl-monophosphoryl-beta-D-arabinose (DPA) translocase to periplasm	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.98.3) subunit DprE1	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.1.333) subunit DprE2	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Arabinofuranosyltransferase AftA (EC 2.4.2.46)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Integral membrane indolylacetylinositol arabinosyltransferase EmbC (EC 2.4.2.-)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Integral membrane indolylacetylinositol arabinosyltransferase EmbA (EC 2.4.2.-)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Integral membrane indolylacetylinositol arabinosyltransferase EmbB (EC 2.4.2.-)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
5-Phosphoribosyl diphosphate (PRPP): decaprenyl-phosphate 5-phosphoribosyltransferase (EC 2.4.2.45)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Putative decaprenylphosphoryl-5-phosphoribose phosphatase (EC 3.1.3.-)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Bifunctional beta-1,5/1,6-galactofuranosyltransferase GlfT2 in cell wall galactan polymerization (EC 2.4.1.288)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
UDP-galactopyranose mutase (EC 5.4.99.9)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Integral membrane indolylacetylinositol arabinosyltransferase (EC 2.4.2.-)	Biosynthesis_of_Arabinogalactan_in_Mycobacteria	Cell Wall and Capsule	Cell wall of Mycobacteria
Orotate phosphoribosyltransferase (EC 2.4.2.10)	TN_RidA_proteins	Experimental Subsystems	
Arginine deiminase (EC 3.5.3.6)	TN_RidA_proteins	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	TN_RidA_proteins	Experimental Subsystems	
Carbamate kinase (EC 2.7.2.2)	TN_RidA_proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	TN_RidA_proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	TN_RidA_proteins	Experimental Subsystems	
Dihydroorotase (EC 3.5.2.3)	TN_RidA_proteins	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	TN_RidA_proteins	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	TN_RidA_proteins	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	TN_RidA_proteins	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	TN_RidA_proteins	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	TN_RidA_proteins	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	TN_RidA_proteins	Experimental Subsystems	
Cyanate hydratase (EC 4.2.1.104)	TN_RidA_proteins	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	TN_RidA_proteins	Experimental Subsystems	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	TN_RidA_proteins	Experimental Subsystems	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	TN_RidA_proteins	Experimental Subsystems	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	TN_RidA_proteins	Experimental Subsystems	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	TN_RidA_proteins	Experimental Subsystems	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	TN_RidA_proteins	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 6	TN_RidA_proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	TN_RidA_proteins	Experimental Subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	TN_RidA_proteins	Experimental Subsystems	
Ornithine cyclodeaminase (EC 4.3.1.12)	TN_RidA_proteins	Experimental Subsystems	
Tryptophanase (EC 4.1.99.1)	TN_RidA_proteins	Experimental Subsystems	
Type III PLP	TN_RidA_proteins	Experimental Subsystems	
Threonine dehydratase, catabolic (EC 4.3.1.19)	TN_RidA_proteins	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	TN_RidA_proteins	Experimental Subsystems	
pyridoxal phosphate-dependent deaminase, putative	TN_RidA_proteins	Experimental Subsystems	
Probable L-amino-acid oxidase (EC 1.4.3.2)	TN_RidA_proteins	Experimental Subsystems	
Opine oxidase subunit B	TN_RidA_proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	TN_RidA_proteins	Experimental Subsystems	
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG	TN_RidA_proteins	Experimental Subsystems	
FAD oxidoreductase	TN_RidA_proteins	Experimental Subsystems	
L-serine dehydratase 1 (EC 4.3.1.17)	TN_RidA_proteins	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	dcernst_RidA_proteins	Experimental Subsystems	
Arginine deiminase (EC 3.5.3.6)	dcernst_RidA_proteins	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	dcernst_RidA_proteins	Experimental Subsystems	
Carbamate kinase (EC 2.7.2.2)	dcernst_RidA_proteins	Experimental Subsystems	
Cysteine synthase (EC 2.5.1.47)	dcernst_RidA_proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	dcernst_RidA_proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	dcernst_RidA_proteins	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	dcernst_RidA_proteins	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	dcernst_RidA_proteins	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	dcernst_RidA_proteins	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	dcernst_RidA_proteins	Experimental Subsystems	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	dcernst_RidA_proteins	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	dcernst_RidA_proteins	Experimental Subsystems	
Cyanate hydratase (EC 4.2.1.104)	dcernst_RidA_proteins	Experimental Subsystems	
Cysteine synthase B (EC 2.5.1.47)	dcernst_RidA_proteins	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	dcernst_RidA_proteins	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	dcernst_RidA_proteins	Experimental Subsystems	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	dcernst_RidA_proteins	Experimental Subsystems	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	dcernst_RidA_proteins	Experimental Subsystems	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	dcernst_RidA_proteins	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	dcernst_RidA_proteins	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	dcernst_RidA_proteins	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	dcernst_RidA_proteins	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	dcernst_RidA_proteins	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	dcernst_RidA_proteins	Experimental Subsystems	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	dcernst_RidA_proteins	Experimental Subsystems	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	dcernst_RidA_proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	dcernst_RidA_proteins	Experimental Subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	dcernst_RidA_proteins	Experimental Subsystems	
Ornithine cyclodeaminase (EC 4.3.1.12)	dcernst_RidA_proteins	Experimental Subsystems	
BH2577 unknown conserved protein in B. subtilis	dcernst_RidA_proteins	Experimental Subsystems	
Tryptophanase (EC 4.1.99.1)	dcernst_RidA_proteins	Experimental Subsystems	
Type III PLP	dcernst_RidA_proteins	Experimental Subsystems	
Threonine dehydratase, catabolic (EC 4.3.1.19)	dcernst_RidA_proteins	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	dcernst_RidA_proteins	Experimental Subsystems	
pyridoxal phosphate-dependent deaminase, putative	dcernst_RidA_proteins	Experimental Subsystems	
Beta-ureidopropionase (EC 3.5.1.6)	dcernst_RidA_proteins	Experimental Subsystems	
RidA	dcernst_RidA_proteins	Experimental Subsystems	
Probable L-amino-acid oxidase (EC 1.4.3.2)	dcernst_RidA_proteins	Experimental Subsystems	
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	dcernst_RidA_proteins	Experimental Subsystems	
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	dcernst_RidA_proteins	Experimental Subsystems	
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	dcernst_RidA_proteins	Experimental Subsystems	
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	dcernst_RidA_proteins	Experimental Subsystems	
Putative HTH-type transcriptional regulator ybaO	dcernst_RidA_proteins	Experimental Subsystems	
Opine oxidase subunit B	dcernst_RidA_proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	dcernst_RidA_proteins	Experimental Subsystems	
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG	dcernst_RidA_proteins	Experimental Subsystems	
FAD oxidoreductase	dcernst_RidA_proteins	Experimental Subsystems	
L-serine dehydratase 1 (EC 4.3.1.17)	dcernst_RidA_proteins	Experimental Subsystems	
Alanine transaminase (EC 2.6.1.2)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase (EC 2.6.1.52)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine phosphatase (EC 3.1.3.3)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine racemase (EC 5.1.1.18)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
D-serine ammonia-lyase (EC 4.3.1.18)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Low-specificity L-threonine aldolase (EC 4.1.2.48)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Glutamate-glyoxylate aminotransferase (EC 2.6.1.4)	Alanine,_serine,_glycine_metabolism_in_plants	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine transporter	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
L-serine dehydratase (EC 4.3.1.17)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine cleavage system H protein	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine phosphatase (EC 3.1.3.3)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase (EC 2.6.1.52)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycerate kinase (EC 2.7.1.31)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Seryl-tRNA synthetase (EC 6.1.1.11)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
D-serine ammonia-lyase (EC 4.3.1.18)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Threonine dehydratase, catabolic (EC 4.3.1.19)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
D-serine/D-alanine/glycine transporter	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
L-serine dehydratase 1 (EC 4.3.1.17)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
D-serine dehydratase transcriptional activator	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
D-serine permease DsdX	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Monoamine oxidase (1.4.3.4)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Cystathionine beta-synthase (EC 4.2.1.22)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Cystathionine gamma-lyase (EC 4.4.1.1)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
L-serine dehydratase, beta subunit (EC 4.3.1.17)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Glycine_and_Serine_Utilization	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine dehydrogenase (EC 1.4.1.1)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Alanine racemase (EC 5.1.1.1)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
D-alanine aminotransferase (EC 2.6.1.21)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
D-serine ammonia-lyase (EC 4.3.1.18)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
D-serine/D-alanine/glycine transporter	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
L-serine dehydratase, beta subunit (EC 4.3.1.17)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Alanine racemase, biosynthetic (EC 5.1.1.1)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Alanine racemase, catabolic (EC 5.1.1.1)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
L-serine dehydratase (EC 4.3.1.17)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Serine transporter	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Valine--pyruvate aminotransferase (EC 2.6.1.66)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	Central carbohydrate metabolism
Threonine dehydratase, catabolic (EC 4.3.1.19)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Threonine dehydratase biosynthetic (EC 4.3.1.19)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase large subunit (EC 2.2.1.6)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase small subunit (EC 2.2.1.6)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase small subunit (EC 2.2.1.6), predicted	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Ketol-acid reductoisomerase (EC 1.1.1.86)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Dihydroxy-acid dehydratase (EC 4.2.1.9)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Leucine dehydrogenase (EC 1.4.1.9)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
2-isopropylmalate synthase (EC 2.3.3.13)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Threonine dehydratase (EC 4.3.1.19)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Valine--pyruvate aminotransferase (EC 2.6.1.66)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
(R)-citramalate synthase (EC 2.3.1.182)	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase small subunit (EC 2.2.1.6), Xanthomonadales type	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase small subunit (EC 2.2.1.6), predicted, Archaeal type 2	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase small subunit (EC 2.2.1.6), predicted, Archaeal type	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	Branched-chain amino acids
LrgA-associated membrane protein LrgB	NOR_SA	Experimental Subsystems	
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	NOR_SA	Experimental Subsystems	
DNA polymerase I (EC 2.7.7.7)	DNA-RNAmod	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	DNA-RNAmod	Experimental Subsystems	
DNA primase (EC 2.7.7.-)	DNA-RNAmod	Experimental Subsystems	
N(6)-L-threonylcarbamoyladenine synthase (EC 2.6.99.4)	DNA-RNAmod	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	DNA-RNAmod	Experimental Subsystems	
COG1611, DNA repair or decarboxylase family	DNA-RNAmod	Experimental Subsystems	
Syd protein	DNA-RNAmod	Experimental Subsystems	
Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C)	DNA-RNAmod	Experimental Subsystems	
Zn-ribbon-containing, possibly nucleic-acid-binding protein	DNA-RNAmod	Experimental Subsystems	
GGDEF domain family protein	DNA-RNAmod	Experimental Subsystems	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	DNA-RNAmod	Experimental Subsystems	
Acyl carrier protein	PANK-Duf89	Experimental Subsystems	
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	PANK-Duf89	Experimental Subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	PANK-Duf89	Experimental Subsystems	
Phosphate:acyl-ACP acyltransferase PlsX	PANK-Duf89	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	PANK-Duf89	Experimental Subsystems	
Amidophosphoribosyltransferase (EC 2.4.2.14)	PANK-Duf89	Experimental Subsystems	
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	PANK-Duf89	Experimental Subsystems	
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	PANK-Duf89	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	PANK-Duf89	Experimental Subsystems	
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	PANK-Duf89	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	PANK-Duf89	Experimental Subsystems	
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	PANK-Duf89	Experimental Subsystems	
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	PANK-Duf89	Experimental Subsystems	
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	PANK-Duf89	Experimental Subsystems	
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	PANK-Duf89	Experimental Subsystems	
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	PANK-Duf89	Experimental Subsystems	
3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59)	PANK-Duf89	Experimental Subsystems	
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	PANK-Duf89	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	PANK-Duf89	Experimental Subsystems	
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	PANK-Duf89	Experimental Subsystems	
DUF89 domain of unknown function	PANK-Duf89	Experimental Subsystems	
DUF89 protein CxxC subfamily	PANK-Duf89	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	PANK-Duf89	Experimental Subsystems	
Acyl carrier protein phosphodiesterase (EC 3.1.4.14)	PANK-Duf89	Experimental Subsystems	
Citrate synthase (si) (EC 2.3.3.1)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase (EC 4.2.1.3)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase 2 (EC 4.2.1.3)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Quinones_HGM	Carbohydrates	Central carbohydrate metabolism
ATP synthase F0 sector subunit a (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase F0 sector subunit c (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase F0 sector subunit b (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase delta chain (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase alpha chain (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase gamma chain (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase beta chain (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase epsilon chain (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit I (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit K (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit E (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit C (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit F (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit A (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit B (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit D (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
ATP synthase F0 sector subunit b' (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
V-type ATP synthase subunit H (EC 3.6.3.14)	ATP_Synthases_HGM	Respiration	ATP synthases
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Cyclic pyranopterin phosphate synthase (MoaA) (EC 4.1.99.18)	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaB	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaC	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaD	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum cofactor biosynthesis protein MoaE	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis protein MoeA	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis protein MoeB	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin-guanine dinucleotide biosynthesis protein MobA	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin-guanine dinucleotide biosynthesis protein MobB	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase II (EC 3.5.4.25)	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Sulfur carrier protein adenylyltransferase ThiF	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
CTP:molybdopterin cytidylyltransferase	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DNA-binding domain of ModE	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdate-binding domain of ModE	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Protein co-occuring with molybdenum cofactor biosynthesis protein B	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis enzyme	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Periplasmic molybdate-binding domain	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdenum transport system protein ModD	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin binding domain MoeA-like	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DUF89 protein CxxC subfamily	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DUF89 protein RTxK subfamily	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Molybdopterin biosynthesis Mog protein, molybdochelatase	Molybdenum_cofactor_biosynthesis_ADH	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate synthase (EC 6.3.2.12)	FolK-PanB	Experimental Subsystems	
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	FolK-PanB	Experimental Subsystems	
Pantoate--beta-alanine ligase (EC 6.3.2.1)	FolK-PanB	Experimental Subsystems	
Aspartate 1-decarboxylase (EC 4.1.1.11)	FolK-PanB	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	FolK-PanB	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	FolK-PanB	Experimental Subsystems	
Autolysis response regulater LytR	LrgAB	Experimental Subsystems	
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	LrgAB	Experimental Subsystems	
NAD-dependent malic enzyme (EC 1.1.1.38)	LrgAB	Experimental Subsystems	
Antiholin-like protein LrgA	LrgAB	Experimental Subsystems	
LrgA-associated membrane protein LrgB	LrgAB	Experimental Subsystems	
Possible carbon dioxide concentrating mechanism protein CcmK	CBSS-63737.11.peg.5033		
Low-affinity CO2 hydration protein CphX	CBSS-63737.11.peg.5033		
NADH dehydrogenase subunit 4, Involved in CO2 fixation	CBSS-63737.11.peg.5033		
Carbon dioxide concentrating mechanism protein CcmO	CBSS-63737.11.peg.5033		
Peptidase family M61 with PDZ domain	CBSS-63737.11.peg.5033		
ORF_ID:slr6100 hypothetical protein	CBSS-63737.11.peg.5033		
FIG00876906: hypothetical protein	CBSS-63737.11.peg.5033		
ATPase involved in DNA repair	CBSS-63737.11.peg.5033		
DNA-binding response regulator, AraC family	CBSS-63737.11.peg.5033		
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	CBSS-63737.11.peg.5033		
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	CBSS-63737.11.peg.5033		
hypothetical protein	CBSS-63737.11.peg.5033		
Tryptophan 2-monooxygenase VioA in violacein biosynthesis (EC 1.13.12.3)	Violacein_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Proto(deoxy)violaceinic acid synthase VioE	Violacein_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan hydroxylase VioD in violacein biosynthesis	Violacein_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Kynurenine 3-monooxygenase homolog VioC in violacein biosynthesis	Violacein_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Violacein biosynthesis protein VioB	Violacein_biosynthesis	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-oxoacyl-[ACP] synthase III in alkane synthesis cluster	Alkane_synthesis_in_bacteria_2	Fatty Acids, Lipids, and Isoprenoids	
Haloalkane dehalogenase-like protein	Alkane_synthesis_in_bacteria_2	Fatty Acids, Lipids, and Isoprenoids	
AMP-dependent synthetase/ligase in alkane synthesis cluster	Alkane_synthesis_in_bacteria_2	Fatty Acids, Lipids, and Isoprenoids	
NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster	Alkane_synthesis_in_bacteria_2	Fatty Acids, Lipids, and Isoprenoids	
Aldehyde decarbonylase (EC 4.1.99.5)	Alkane_biosynthesis_in_bacteria	Secondary Metabolism	Hydrocarbons
Acyl-ACP reductase	Alkane_biosynthesis_in_bacteria	Secondary Metabolism	Hydrocarbons
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	Alkane_biosynthesis_in_bacteria	Secondary Metabolism	Hydrocarbons
Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase	DAP_(1,3-diaminopropane)_production	Amino Acids and Derivatives	Polyamines
Carboxynorspermidine dehydrogenase	DAP_(1,3-diaminopropane)_production	Amino Acids and Derivatives	Polyamines
Carboxynorspermidine decarboxylase	DAP_(1,3-diaminopropane)_production	Amino Acids and Derivatives	Polyamines
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-)	DAP_(1,3-diaminopropane)_production	Amino Acids and Derivatives	Polyamines
Diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76)	DAP_(1,3-diaminopropane)_production	Amino Acids and Derivatives	Polyamines
L-2,4-diaminobutyrate decarboxylase (EC 4.1.1.86)	DAP_(1,3-diaminopropane)_production	Amino Acids and Derivatives	Polyamines
Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76)	DAP_(1,3-diaminopropane)_production	Amino Acids and Derivatives	Polyamines
Urease beta subunit (EC 3.5.1.5)	Urease_subunits	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease gamma subunit (EC 3.5.1.5)	Urease_subunits	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease alpha subunit (EC 3.5.1.5)	Urease_subunits	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreD	Urease_subunits	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreE	Urease_subunits	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreF	Urease_subunits	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Urease accessory protein UreG	Urease_subunits	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t(6)A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t(6)A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
p53-regulating protein kinase (human PRPK/yeast YGR262c)	t(6)A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
KEOPS complex component Pcc1	t(6)A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
KEOPS complex component CGI121	t(6)A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	t(6)A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
GON7	t(6)A_synthesis_in_Archaea_and_Eukaryotes	RNA Metabolism	RNA processing and modification
Urease accessory protein UreF	CBSS-452863.6.peg.1046		
Urease gamma subunit (EC 3.5.1.5)	CBSS-452863.6.peg.1046		
Urease accessory protein UreE	CBSS-452863.6.peg.1046		
Urease alpha subunit (EC 3.5.1.5)	CBSS-452863.6.peg.1046		
Urease accessory protein UreG	CBSS-452863.6.peg.1046		
Urease accessory protein UreD	CBSS-452863.6.peg.1046		
HoxN/HupN/NixA family nickel/cobalt transporter	CBSS-452863.6.peg.1046		
Urease beta subunit (EC 3.5.1.5)	CBSS-452863.6.peg.1046		
Eukaryotic-type low-affinity urea transporter	CBSS-452863.6.peg.1046		
ANTAR domain protein	CBSS-452863.6.peg.1046		
Proline/sodium symporter PutP (TC 2.A.21.2.1)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Glutamate 5-kinase (EC 2.7.2.11)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
RNA-binding C-terminal domain PUA	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
N-acetylglutamate synthase (EC 2.3.1.1)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Acetylglutamate kinase (EC 2.7.2.8)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Acetylornithine aminotransferase (EC 2.6.1.11)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Argininosuccinate synthase (EC 6.3.4.5)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Argininosuccinate lyase (EC 4.3.2.1)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ornithine aminotransferase (EC 2.6.1.13)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Late competence protein ComER, similarity with Pyrroline-5-carboxylate reductase	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Arginase (EC 3.5.3.1)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Ornithine cyclodeaminase (EC 4.3.1.12)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Gamma-glutamyl phosphate reductase (EC 1.2.1.41), cyanobacterial subgroup	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Uncharacterized cyanobacterial protein, sll0461 homolog, ProA-like, but lacks essential Cysteine residue at catalytic site	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-nopaline/octopine oxidase subunit A	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-nopaline/octopine oxidase subunit B	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-octopine dehydrogenase (EC 1.5.1.11)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-nopaline catabolic operon protein 2	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-nopaline dehydrogenase (EC 1.5.1.19)	Evolution_of_Proline_Biosynthesis_(for_review_by_Fichman_et_al)	Amino Acids and Derivatives	Proline and 4-hydroxyproline
LSU ribosomal protein L28p	COG0523	Experimental Subsystems	
LSU ribosomal protein L31p	COG0523	Experimental Subsystems	
SSU ribosomal protein S14p (S29e)	COG0523	Experimental Subsystems	
LSU ribosomal protein L32p	COG0523	Experimental Subsystems	
LSU ribosomal protein L33p	COG0523	Experimental Subsystems	
LSU ribosomal protein L21p	COG0523	Experimental Subsystems	
LSU ribosomal protein L27p	COG0523	Experimental Subsystems	
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	COG0523	Experimental Subsystems	
Thioredoxin reductase (EC 1.8.1.9)	COG0523	Experimental Subsystems	
Uracil phosphoribosyltransferase (EC 2.4.2.9)	COG0523	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	COG0523	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	COG0523	Experimental Subsystems	
Dihydroorotase (EC 3.5.2.3)	COG0523	Experimental Subsystems	
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	COG0523	Experimental Subsystems	
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	COG0523	Experimental Subsystems	
Zinc ABC transporter, inner membrane permease protein ZnuB	COG0523	Experimental Subsystems	
Zinc ABC transporter, ATP-binding protein ZnuC	COG0523	Experimental Subsystems	
COG0523: Putative GTPases (G3E family)	COG0523	Experimental Subsystems	
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	COG0523	Experimental Subsystems	
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	COG0523	Experimental Subsystems	
LSU ribosomal protein L36p	COG0523	Experimental Subsystems	
Carbon starvation protein A	COG0523	Experimental Subsystems	
Zinc ABC transporter, periplasmic-binding protein ZnuA	COG0523	Experimental Subsystems	
Zinc uptake regulation protein ZUR	COG0523	Experimental Subsystems	
Creatinine amidohydrolase (EC 3.5.2.10)	COG0523	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	COG0523	Experimental Subsystems	
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	COG0523	Experimental Subsystems	
Tryptophan 2-monooxygenase (EC 1.13.12.3)	COG0523	Experimental Subsystems	
Uncharacterized GTP-binding protein YjiA	COG0523	Experimental Subsystems	
C4-type zinc finger protein, DksA/TraR family	COG0523	Experimental Subsystems	
Carbon starvation protein A paralog	COG0523	Experimental Subsystems	
CobW GTPase involved in cobalt insertion for B12 biosynthesis	COG0523	Experimental Subsystems	
High-affnity carbon uptake protein Hat/HatR	COG0523	Experimental Subsystems	
VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1	COG0523	Experimental Subsystems	
Uroporphyrinogen decarboxylase (URO-D)	COG0523	Experimental Subsystems	
Methylcobalamin:coenzyme M methyltransferase, methanol-specific	COG0523	Experimental Subsystems	
Cobalamin synthesis protein/P47K family protein	COG0523	Experimental Subsystems	
Vegetatible incompatibility protein HET-E-1	COG0523	Experimental Subsystems	
Methanol methyltransferase corrinoid protein	COG0523	Experimental Subsystems	
methylcobamide:CoM methyltransferase isozyme M	COG0523	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Test_Folate_OF	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Test_Folate_OF	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Test_Folate_OF	Experimental Subsystems	
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Transcriptional repressor of arabinoside utilization operon, GntR family	L-Arabinose_CS	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Arabinose-proton symporter	L-Arabinose_CS	Carbohydrates	Monosaccharides
Transcriptional regulator of the arabinose operon in Shewanella, GntR family	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabonate dehydratase (EC 4.2.1.25)	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabinose transport system permease protein (TC 3.A.1.2.2)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)	L-Arabinose_CS	Carbohydrates	Monosaccharides
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabinose-specific 1-epimerase (mutarotase)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Arabinose operon regulatory protein	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Putative oxidoreductase in arabinose utilization cluster	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabinolactonase (EC 3.1.1.15)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Ribulokinase (EC 2.7.1.16)	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabinose isomerase (EC 5.3.1.4)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase	L-Arabinose_CS	Carbohydrates	Monosaccharides
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster	L-Arabinose_CS	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase II (EC 3.2.1.55)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Predicted arabinose ABC transporter, substrate binding protein	L-Arabinose_CS	Carbohydrates	Monosaccharides
alternative Ribulokinase (EC 2.7.1.16)	L-Arabinose_CS	Carbohydrates	Monosaccharides
L-arabinose 1-dehydrogenase (EC 1.1.1.46)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Alternative L-arabinose isomerase (EC 5.3.1.4)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Predicted L-arabinose isomerase (EC 5.3.1.4)	L-Arabinose_CS	Carbohydrates	Monosaccharides
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon	L-Arabinose_CS	Carbohydrates	Monosaccharides
Predicted arabinose ABC transporter, permease protein 1	L-Arabinose_CS	Carbohydrates	Monosaccharides
Predicted arabinose ABC transporter, permease protein 2	L-Arabinose_CS	Carbohydrates	Monosaccharides
Arabinose-regulated TonB-dependent outer membrane receptor	L-Arabinose_CS	Carbohydrates	Monosaccharides
Putative DCC type thiol-disulphide oxidoreductase	Test_DCC_thioredoxin	Experimental Subsystems	
Protein of unknown function DUF393	Test_DCC_thioredoxin	Experimental Subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	COG2320_family		
Uncharacterised protein family UPF0157 (COG2320)	COG2320_family		
N-Acyltransferase superfamily	COG2320_family		
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	PLP_Y_genes	Experimental Subsystems	
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)	PLP_Y_genes	Experimental Subsystems	
COG1872	PLP_Y_genes	Experimental Subsystems	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	PLP_Y_genes	Experimental Subsystems	
Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	PLP_Y_genes	Experimental Subsystems	
Transcriptional regulator, GntR family domain	PLP_Y_genes	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	PLP_Y_genes	Experimental Subsystems	
Valine--pyruvate aminotransferase (EC 2.6.1.66)	PLP_Y_genes	Experimental Subsystems	
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	PLP_Y_genes	Experimental Subsystems	
Protein containing an Alanine Racemase Domain	PLP_Y_genes	Experimental Subsystems	
Aspartate aminotransferase family	PLP_Y_genes	Experimental Subsystems	
D-alanine aminotransferase (EC 2.6.1.21)	PLP_Y_genes	Experimental Subsystems	
Aspartate transaminase (EC 2.6.1.1)	PLP_Y_genes	Experimental Subsystems	
Aspartate aminotransferase family, YhfS	PLP_Y_genes	Experimental Subsystems	
Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase	PLP_Y_genes	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 1	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Alanine racemase (EC 5.1.1.1)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Aspartate aminotransferase (EC 2.6.1.1)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Aspartate carbamoyltransferase (EC 2.1.3.2)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Dihydroorotase (EC 3.5.2.3)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Orotate phosphoribosyltransferase (EC 2.4.2.10)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
N-acetylglutamate synthase (EC 2.3.1.1)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylglutamate kinase (EC 2.7.2.8)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Ornithine carbamoyltransferase (EC 2.1.3.3)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Argininosuccinate synthase (EC 6.3.4.5)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Argininosuccinate lyase (EC 4.3.2.1)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cystathionine beta-lyase (EC 4.4.1.8)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Carbamate kinase (EC 2.7.2.2)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylornithine deacetylase (EC 3.5.1.16)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Arginine deiminase (EC 3.5.3.6)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
D-cysteine desulfhydrase (EC 4.4.1.15)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Probable L-amino-acid oxidase (EC 1.4.3.2)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine dehydratase, catabolic (EC 4.3.1.19)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11) @ N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
D-serine ammonia-lyase (EC 4.3.1.18)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Diaminopropionate ammonia-lyase (EC 4.3.1.15)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
monooxygenase, putative	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 3 tandem domains	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 3	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Tyrosine phenol-lyase (EC 4.1.99.2)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 4 tandem domains	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA fragment or small ORF	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
3-hydroxy-D-aspartate aldolase (EC 4.1.3.41)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine dehydratase (EC 4.3.1.19)	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine/serine dehydratases	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
FAD oxidoreductase	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1) in a prenylated indole derivative biosynthesis cluster	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 2 tandem domains	RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
D-serine ammonia-lyase (EC 4.3.1.18)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Threonine dehydratase, catabolic (EC 4.3.1.19)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Diaminopropionate ammonia-lyase (EC 4.3.1.15)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Aspartate aminotransferase (EC 2.6.1.1)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cystathionine beta-lyase (EC 4.4.1.8)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cystathionine gamma-synthase (EC 2.5.1.48)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cysteine synthase (EC 2.5.1.47)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
D-cysteine desulfhydrase (EC 4.4.1.15)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Alanine racemase (EC 5.1.1.1)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 1	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cystathionine gamma-lyase (EC 4.4.1.1)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 3	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA fragment or small ORF	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Threonine/serine dehydratases	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Threonine dehydratase (EC 4.3.1.19)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Tyrosine phenol-lyase (EC 4.1.99.2)	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 3 tandem domains	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 2 tandem domains	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1) in a prenylated indole derivative biosynthesis cluster	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
threonine dehydratase	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 4 tandem domains	TN_RidA:_all_subgroups,_981_genomes_PLP	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 3 tandem domains	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 1	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 3	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
Endoribonuclease L-PSP	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, unclassified	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA fragment or small ORF	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 2 tandem domains	RidA:_all_subgroups,_8100_genomes	Metabolite damage and its repair or mitigation	
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	RidA1_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	RidA1_subgroup	Metabolite damage and its repair or mitigation	
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	RidA1_subgroup	Metabolite damage and its repair or mitigation	
FIG110192: hypothetical protein	RidA1_subgroup	Metabolite damage and its repair or mitigation	
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	RidA1_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	RidA1_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 1	RidA1_subgroup	Metabolite damage and its repair or mitigation	
Arsenical pump-driving ATPase (EC 3.6.3.16)	RidA1_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	RidA1_subgroup	Metabolite damage and its repair or mitigation	
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	RidA1_subgroup	Metabolite damage and its repair or mitigation	
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	RidA1_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	RidA1_subgroup	Metabolite damage and its repair or mitigation	
FIG146518: Zn-dependent hydrolases, including glyoxylases	RidA1_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 3	RidA1_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	RidA1_subgroup	Metabolite damage and its repair or mitigation	
Aspartate aminotransferase (EC 2.6.1.1)	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
L-serine dehydratase 1 (EC 4.3.1.17)	RidA2_subgroup_(YoaB-like)	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	RidA5_subgroup	Metabolite damage and its repair or mitigation	
FIG022199: FAD-binding protein	RidA5_subgroup	Metabolite damage and its repair or mitigation	
FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase	RidA5_subgroup	Metabolite damage and its repair or mitigation	
FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase	RidA5_subgroup	Metabolite damage and its repair or mitigation	
FIG143263: Glycosyl transferase	RidA5_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	RidA5_subgroup	Metabolite damage and its repair or mitigation	
Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites	RidA5_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	RidA5_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 1	RidA5_subgroup	Metabolite damage and its repair or mitigation	
Putative cytochrome C-type biogenesis protein	RidA5_subgroup	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	RidA5_subgroup	Metabolite damage and its repair or mitigation	
putative surface layer protein, with cytochrome c domain	RidA5_subgroup	Metabolite damage and its repair or mitigation	
Chorismatase of XanB2 type, 3-Hydroxybenzoate and 4-HBA producing (EC 3.3.2.-)	RidA5_subgroup	Metabolite damage and its repair or mitigation	
Chorismatase of RapK/FkbO type, 3,4-dihydroxycyclohexa-1,5-diene-carboxylate producing (EC 3.3.2.-)	RidA5_subgroup	Metabolite damage and its repair or mitigation	
Arginine deiminase (EC 3.5.3.6)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Ornithine carbamoyltransferase (EC 2.1.3.3)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Carbamate kinase (EC 2.7.2.2)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Threonine synthase (EC 4.2.3.1)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Threonine dehydratase (EC 4.3.1.19)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Aspartate aminotransferase (EC 2.6.1.1)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Urease alpha subunit (EC 3.5.1.5)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Cyanate hydratase (EC 4.2.1.104)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Aspartate carbamoyltransferase (EC 2.1.3.2)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Glutamate--cysteine ligase (EC 6.3.2.2)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Glutathione synthetase (EC 6.3.2.3)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Carbonic anhydrase (EC 4.2.1.1)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 1	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Cystathionine beta-lyase (EC 4.4.1.8)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
D-cysteine desulfhydrase (EC 4.4.1.15)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Ornithine cyclodeaminase (EC 4.3.1.12)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
BH2577 unknown conserved protein in B. subtilis	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Type III PLP	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Threonine dehydratase, catabolic (EC 4.3.1.19)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
pyridoxal phosphate-dependent deaminase, putative	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Beta-ureidopropionase (EC 3.5.1.6)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Probable L-amino-acid oxidase (EC 1.4.3.2)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 3 tandem domains	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Opine oxidase subunit B	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
FAD oxidoreductase	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
L-serine dehydratase 1 (EC 4.3.1.17)	RidA_proteins_copy_with_new_groups	Metabolite damage and its repair or mitigation	
Pyridoxal kinase (EC 2.7.1.35)	K	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	K	Experimental Subsystems	
YjeF protein, N-terminal domain, short variant	K	Experimental Subsystems	
Histidine ammonia-lyase (EC 4.3.1.3)	Histidine_Degradation_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Urocanate hydratase (EC 4.2.1.49)	Histidine_Degradation_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Histidine transport protein (permease)	Histidine_Degradation_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Imidazolonepropionase (EC 3.5.2.7)	Histidine_Degradation_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Glutamate formiminotransferase (EC 2.1.2.5)	Histidine_Degradation_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Formiminoglutamase (EC 3.5.3.8)	Histidine_Degradation_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Histidine_Degradation_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Homoserine dehydrogenase (EC 1.1.1.3)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine O-succinyltransferase (EC 2.3.1.46)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-synthase (EC 2.5.1.48)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-lyase (EC 4.4.1.1)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-synthase (EC 4.2.1.22)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter ATP-binding protein	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter permease protein	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter substrate-binding protein	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylmethionine synthetase (EC 2.5.1.6)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-ribosylhomocysteine lyase (EC 4.4.1.21)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine kinase (EC 2.7.1.39)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homocysteine S-methyltransferase (EC 2.1.1.10)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Substrate-specific component MtsA of methionine-regulated ECF transporter	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Serine acetyltransferase (EC 2.3.1.30)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase (EC 2.5.1.47)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-lyase (EC 4.4.1.8)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Archaeal S-adenosylmethionine synthetase (EC 2.5.1.6)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine O-acetyltransferase (EC 2.3.1.31)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Adenosylhomocysteinase (EC 3.3.1.1)	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted regulator of methionine metabolism, ArsR family	Methionine_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
RelE1/StdE1 toxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelB1/StbD1 antitoxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelE2/StdE2 toxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelB2/StbD2 antitoxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelE3/StdE3 toxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
RelB3/StbD3 antitoxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
HigB1 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Doc toxin MazF2 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Phd antitoxin MazE2 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Doc toxin MazF3 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Phd antitoxin MazE3 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Doc toxin MazF4 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Phd antitoxin MazE4 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Doc toxin MazF5 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Phd antitoxin MazE5 in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
MazF6 toxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
MazE6 antitoxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
MazF8 toxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
MazE8 antitoxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
MazF9 toxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
MazE9 antitoxin in Mycobacteria	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC1 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB1 protein (antitoxin to VapC1)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC2 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB2 protein (antitoxin to VapC2)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC3 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB3 protein (antitoxin to VapC3)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC4 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB4 protein (antitoxin to VapC4)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC5 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB5 protein (antitoxin to VapC5)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC6 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB6 protein (antitoxin to VapC6)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC7 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB7 protein (antitoxin to VapC7)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC8 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB8 protein (antitoxin to VapC8)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC9 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB9 protein (antitoxin to VapC9)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC10 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB10 protein (antitoxin to VapC10)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC11 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB11 protein (antitoxin to VapC11)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC12 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB12 protein (antitoxin to VapC12)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC13 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB13 protein (antitoxin to VapC13)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC14 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB14 protein (antitoxin to VapC14)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC15 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB15 protein (antitoxin to VapC15)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC17 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB17 protein (antitoxin to VapC17)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC18 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB18 protein (antitoxin to VapC18)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC19 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB19 protein (antitoxin to VapC19)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC20 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB20 protein (antitoxin to VapC20)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC21 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB21 protein (antitoxin to VapC21)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC22 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB22 protein (antitoxin to VapC22)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapC23 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
VapB23 protein (antitoxin to VapC23)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
ParE1 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
ParD1 protein (antitoxin to ParE1)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
ParE2 antibacterial toxin protein	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
ParD2 protein (antitoxin to ParE2)	Toxin-antitoxin_system_in_Mycobacterium	Regulation and Cell signaling	Programmed Cell Death and Toxin-antitoxin Systems
Putative methyltransferase, methionine synthase II (B12-independent)-like	Streptococci_comparison	Experimental Subsystems	
contains methionine synthase, vitamin-B12 independent domain	Streptococci_comparison	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	Streptococci_comparison	Experimental Subsystems	
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Streptococci_comparison	Experimental Subsystems	
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Streptococci_comparison	Experimental Subsystems	
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Streptococci_comparison	Experimental Subsystems	
Homocysteine S-methyltransferase (EC 2.1.1.10)	Streptococci_comparison	Experimental Subsystems	
Anthranilate synthase, aminase component (EC 4.1.3.27)	Streptococci_comparison	Experimental Subsystems	
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Streptococci_comparison	Experimental Subsystems	
Chorismate synthase (EC 4.2.3.5)	Streptococci_comparison	Experimental Subsystems	
Chorismate mutase I (EC 5.4.99.5)	Streptococci_comparison	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	Streptococci_comparison	Experimental Subsystems	
Urea channel UreI	Streptococci_comparison	Experimental Subsystems	
Glutamate formyltransferase	Streptococci_comparison	Experimental Subsystems	
Glutamate formiminotransferase (EC 2.1.2.5)	Streptococci_comparison	Experimental Subsystems	
Imidazolonepropionase (EC 3.5.2.7)	Streptococci_comparison	Experimental Subsystems	
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Streptococci_comparison	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	Streptococci_comparison	Experimental Subsystems	
Glycerol kinase (EC 2.7.1.30)	Streptococci_comparison	Experimental Subsystems	
Homolog of homocysteine-binding domain	Streptococci_comparison	Experimental Subsystems	
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	Streptococci_comparison	Experimental Subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	YggSTF	Experimental Subsystems	
Phosphoserine phosphatase (EC 3.1.3.3)	YggSTF	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	YggSTF	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	YggSTF	Experimental Subsystems	
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	YggSTF	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	YggSTF	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	YggSTF	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	YggSTF	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	YggSTF	Experimental Subsystems	
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	YggSTF	Experimental Subsystems	
Predicted transcriptional regulator of pyridoxine metabolism	YggSTF	Experimental Subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	YggSTF	Experimental Subsystems	
Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA	YggSTF	Experimental Subsystems	
Glutamate 5-kinase (EC 2.7.2.11)	YggSTF	Experimental Subsystems	
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	YggSTF	Experimental Subsystems	
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	YggSTF	Experimental Subsystems	
Cell division protein FtsZ (EC 3.4.24.-)	YggSTF	Experimental Subsystems	
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	YggSTF	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	YggSTF	Experimental Subsystems	
Leucyl-tRNA synthetase (EC 6.1.1.4)	YggSTF	Experimental Subsystems	
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	YggSTF	Experimental Subsystems	
Twitching motility protein PilT	YggSTF	Experimental Subsystems	
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)	YggSTF	Experimental Subsystems	
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	YggSTF	Experimental Subsystems	
L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)	YggSTF	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	YggSTF	Experimental Subsystems	
FIG001583: hypothetical protein, contains S4-like RNA binding domain	YggSTF	Experimental Subsystems	
COG1872	YggSTF	Experimental Subsystems	
COG3786: Uncharacterized protein conserved in bacteria	YggSTF	Experimental Subsystems	
Chorismate mutase I (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydratase (EC 4.2.1.51)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Periplasmic chorismate mutase I precursor (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Transcriptional repressor protein TyrR	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase II (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydrogenase (EC 1.3.1.12)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase (EC 5.4.99.5)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Arogenate dehydratase (EC 4.2.1.91)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Arogenate dehydrogenase (EC 1.3.1.43)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aromatic amino acid aminotransferase gamma (EC 2.6.1.57)	Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	Aromatic amino acids and derivatives
NADH dehydrogenase (EC 1.6.99.3) in cluster with putative pheromone precursor	CBSS-565654.4.peg.3098_cAD1_cluster		
Putative prenyltransferase, contains 1,4-dihydroxy-2-naphthoate octaprenyltransferase domain	CBSS-565654.4.peg.3098_cAD1_cluster		
Pheromone cAD1 precursor lipoprotein Cad	CBSS-565654.4.peg.3098_cAD1_cluster		
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	CBSS-565654.4.peg.3098_cAD1_cluster		
Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	CBSS-565654.4.peg.3098_cAD1_cluster		
Hypothetical similar to thiamin biosynthesis lipoprotein ApbE	CBSS-565654.4.peg.3098_cAD1_cluster		
Possible secreted protein in the cAD1 pheromone cluater	CBSS-565654.4.peg.3098_cAD1_cluster		
NADH dehydrogenase (EC 1.6.99.3)	CBSS-565654.4.peg.3098_cAD1_cluster		
Transport ATP-binding protein CydD	CBSS-565654.4.peg.3098_cAD1_cluster		
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	CBSS-565654.4.peg.3098_cAD1_cluster		
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	CBSS-565654.4.peg.3098_cAD1_cluster		
DNA translocase FtsK	CBSS-565654.4.peg.3098_cAD1_cluster		
transcriptional regulator, MarR family	CBSS-565654.4.peg.3098_cAD1_cluster		
Transport ATP-binding protein CydC	CBSS-565654.4.peg.3098_cAD1_cluster		
Electron transport complex protein RnfA	CBSS-565654.4.peg.3098_cAD1_cluster		
NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative	CBSS-565654.4.peg.3098_cAD1_cluster		
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthase (EC 2.8.1.6)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioC	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioH	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Dethiobiotin synthetase (EC 6.3.3.3)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Pimeloyl-CoA synthase (EC 6.2.1.14)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin operon repressor	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Substrate-specific component BioY of biotin ECF transporter	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
ATPase component BioM of energizing module of biotin ECF transporter	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Transmembrane component BioN of energizing module of biotin ECF transporter	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
predicted biotin regulatory protein BioR (GntR family)	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioG	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Predicted biotin repressor from TetR family	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin transporter YigM, drug/metabolite transporter (DMT) superfamily	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein bioZ	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein bioK	Biotin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
ABC transporter, ATP-binding/permease protein	pantothenate_MCF_transporter	Experimental Subsystems	
ABC transporter ATP-binding protein	pantothenate_MCF_transporter	Experimental Subsystems	
transporter, putative	pantothenate_MCF_transporter	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	pantothenate_MCF_transporter	Experimental Subsystems	
Uncharacterized MFS-type transporter YwoG	pantothenate_MCF_transporter	Experimental Subsystems	
Ubiquinone biosynthesis monooxygenase UbiB	Heme_LB		
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	Heme_LB		
Glutamyl-tRNA reductase (EC 1.2.1.70)	Heme_LB		
Glutamyl-tRNA synthetase (EC 6.1.1.17)	Heme_LB		
Porphobilinogen synthase (EC 4.2.1.24)	Heme_LB		
Porphobilinogen deaminase (EC 2.5.1.61)	Heme_LB		
Uroporphyrinogen-III synthase (EC 4.2.1.75)	Heme_LB		
Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives)	Heme_LB		
Homolog of E. coli HemX protein	Heme_LB		
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Heme_LB		
Precorrin-2 oxidase (EC 1.3.1.76)	Heme_LB		
Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Heme_LB		
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Heme_LB		
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	Heme_LB		
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Heme_LB		
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Heme_LB		
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Heme_LB		
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Heme_LB		
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	Heme_LB		
Translation elongation factor LepA	Heme_LB		
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Heme_LB		
Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS)	Heme_LB		
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase	Heme_LB		
Oxidative decarboxylase HemQ of Fe-coproporphyrin-III propionate side chains, oxygen-dependent (no EC)	Heme_LB		
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Heme_LB		
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	Heme_LB		
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	Heme_LB		
Heat-inducible transcription repressor HrcA	Heme_LB		
Radical SAM heme biosynthesis protein AhbD, Fe-coproporphyrin III decarboxylase	Heme_LB		
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	Heme_LB		
Cytochrome cd1 nitrite reductase (EC:1.7.2.1)	Heme_LB		
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Heme_LB		
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake	Heme_LB		
5-aminolevulinate synthase (EC 2.3.1.37)	Heme_LB		
Uncharacterized ABC1 family protein XCC_1720	Heme_LB		
Siroheme decarboxylase AhbA, alternate heme biosynthesis pathway	Heme_LB		
Siroheme decarboxylase AhbB, alternate heme biosynthesis pathway	Heme_LB		
Radical SAM heme biosynthesis protein AhbC, 12,18-didecarboxysirohaem deacetylase	Heme_LB		
Hypothetical protein DUF2999	Heme_LB		
Distant homolog of E. coli HemX protein in Xanthomonadaceae	Heme_LB		
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75)	Heme_LB		
Uncharacterized protein clustered with hemC, hemD in Alphaproteobacteria	Heme_LB		
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75)	Heme_LB		
putative monooxygenase domain	Heme_LB		
Cobalamin synthase	Heme_LB		
Glutamyl-tRNA synthetase (EC 6.1.1.17)	Heme_and_Siroheme_Biosynthesis		
Glutamyl-tRNA reductase (EC 1.2.1.70)	Heme_and_Siroheme_Biosynthesis		
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	Heme_and_Siroheme_Biosynthesis		
Porphobilinogen synthase (EC 4.2.1.24)	Heme_and_Siroheme_Biosynthesis		
Porphobilinogen deaminase (EC 2.5.1.61)	Heme_and_Siroheme_Biosynthesis		
Uroporphyrinogen-III synthase (EC 4.2.1.75)	Heme_and_Siroheme_Biosynthesis		
Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives)	Heme_and_Siroheme_Biosynthesis		
Homolog of E. coli HemX protein	Heme_and_Siroheme_Biosynthesis		
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Heme_and_Siroheme_Biosynthesis		
Precorrin-2 oxidase (EC 1.3.1.76)	Heme_and_Siroheme_Biosynthesis		
Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Heme_and_Siroheme_Biosynthesis		
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Heme_and_Siroheme_Biosynthesis		
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	Heme_and_Siroheme_Biosynthesis		
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Heme_and_Siroheme_Biosynthesis		
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Heme_and_Siroheme_Biosynthesis		
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Heme_and_Siroheme_Biosynthesis		
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Heme_and_Siroheme_Biosynthesis		
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	Heme_and_Siroheme_Biosynthesis		
Translation elongation factor LepA	Heme_and_Siroheme_Biosynthesis		
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Heme_and_Siroheme_Biosynthesis		
Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS)	Heme_and_Siroheme_Biosynthesis		
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase	Heme_and_Siroheme_Biosynthesis		
Oxidative decarboxylase HemQ of Fe-coproporphyrin-III propionate side chains, oxygen-dependent (no EC)	Heme_and_Siroheme_Biosynthesis		
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Heme_and_Siroheme_Biosynthesis		
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	Heme_and_Siroheme_Biosynthesis		
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	Heme_and_Siroheme_Biosynthesis		
Heat-inducible transcription repressor HrcA	Heme_and_Siroheme_Biosynthesis		
Radical SAM heme biosynthesis protein AhbD, Fe-coproporphyrin III decarboxylase	Heme_and_Siroheme_Biosynthesis		
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	Heme_and_Siroheme_Biosynthesis		
Nitrite reductase (EC 1.7.2.1)	Heme_and_Siroheme_Biosynthesis		
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Heme_and_Siroheme_Biosynthesis		
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake	Heme_and_Siroheme_Biosynthesis		
5-aminolevulinate synthase (EC 2.3.1.37)	Heme_and_Siroheme_Biosynthesis		
Siroheme decarboxylase AhbA, alternate heme biosynthesis pathway	Heme_and_Siroheme_Biosynthesis		
Siroheme decarboxylase AhbB, alternate heme biosynthesis pathway	Heme_and_Siroheme_Biosynthesis		
Radical SAM heme biosynthesis protein AhbC, 12,18-didecarboxysirohaem deacetylase	Heme_and_Siroheme_Biosynthesis		
Hypothetical protein DUF2999	Heme_and_Siroheme_Biosynthesis		
Distant homolog of E. coli HemX protein in Xanthomonadaceae	Heme_and_Siroheme_Biosynthesis		
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75)	Heme_and_Siroheme_Biosynthesis		
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75)	Heme_and_Siroheme_Biosynthesis		
putative monooxygenase domain	Heme_and_Siroheme_Biosynthesis		
Cobalamin synthase	Heme_and_Siroheme_Biosynthesis		
Carbamate kinase (EC 2.7.2.2)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine/ornithine antiporter ArcD	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine deiminase (EC 3.5.3.6)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Aspartate aminotransferase (EC 2.6.1.1)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Spermidine synthase (EC 2.5.1.16)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine decarboxylase (EC 4.1.1.19)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-carbamoylputrescine amidase (EC 3.5.1.53)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Agmatine deiminase (EC 3.5.3.12)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine cyclodeaminase (EC 4.3.1.12)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Agmatine/putrescine antiporter, associated with agmatine catabolism	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Putrescine carbamoyltransferase (EC 2.1.3.6)	Arginine_deiminase_and_agmatine_deiminase_pathways_in_Streptococci	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate transporter, involved in acid tolerance, ATP-binding protein	Glutamate_transporter_involved_in_acid_tolerance_in_Streptococcus	Stress Response	Acid stress
Glutamate transport substrate-binding protein	Glutamate_transporter_involved_in_acid_tolerance_in_Streptococcus	Stress Response	Acid stress
Glutamate transport permease protein	Glutamate_transporter_involved_in_acid_tolerance_in_Streptococcus	Stress Response	Acid stress
Glutamate transport membrane-spanning protein	Glutamate_transporter_involved_in_acid_tolerance_in_Streptococcus	Stress Response	Acid stress
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	COG3268	Experimental Subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	COG3268	Experimental Subsystems	
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	COG3268	Experimental Subsystems	
COG3268	COG3268	Experimental Subsystems	
Threonine dehydrogenase and related Zn-dependent dehydrogenases	COG3268	Experimental Subsystems	
Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	COG3268	Experimental Subsystems	
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	COG3268	Experimental Subsystems	
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	COG3268	Experimental Subsystems	
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	COG3268	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartokinase (EC 2.7.2.4)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate decarboxylase (EC 4.1.1.20)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted lysine transporter, ATP-binding cassette domain LysY	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted lysine transporter, lysine-binding protein/permease protein LysX	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate aminotransferase (EC 2.6.1.1)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate--ammonia ligase (EC 6.3.1.1)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate epimerase (EC 5.1.1.7)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnH	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) YisO	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnB	Lysine_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
RidA/YER057c/UK114 superfamily protein	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	TN_RidA:_all_subgroups,_981_genomes		
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, group 1	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, group 6	TN_RidA:_all_subgroups,_981_genomes		
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	TN_RidA:_all_subgroups,_981_genomes		
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	TN_RidA:_all_subgroups,_981_genomes		
monooxygenase, putative	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, group 3	TN_RidA:_all_subgroups,_981_genomes		
Probable L-amino-acid oxidase (EC 1.4.3.2)	TN_RidA:_all_subgroups,_981_genomes		
RidA fragment or small ORF	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, group 5	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, 3 tandem domains	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, group 4	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, 2 tandem domains	TN_RidA:_all_subgroups,_981_genomes		
FAD oxidoreductase	TN_RidA:_all_subgroups,_981_genomes		
RidA/YER057c/UK114 superfamily, 4 tandem domains	TN_RidA:_all_subgroups,_981_genomes		
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
tRNA-guanine transglycosylase (EC 2.4.2.29)	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
glutamyl-Q-tRNA synthetase	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Queuosine Biosynthesis QueC ATPase	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Queuosine biosynthesis QueD, PTPS-I	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Queuosine Biosynthesis QueE Radical SAM	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Queuosine_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hexokinase (EC 2.7.1.1)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (EC 1.2.1.9)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Pyruvate orthophosphate dikinase (PPDK) regulatory protein	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Malate dehydrogenase (EC 1.1.1.37)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
NAD-dependent malic enzyme (EC 1.1.1.38)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
NADP-dependent malic enzyme (EC 1.1.1.40)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Glycolysis_and_Gluconeogenesis_in_plants	Carbohydrates	Central carbohydrate metabolism
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate pyrophosphohydolase type 2	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminodeoxychorismate lyase (EC 4.1.3.38)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate synthase (EC 6.3.2.12)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folylpolyglutamate synthase (EC 6.3.2.17)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate reductase (EC 1.5.1.3)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
FolM Alternative dihydrofolate reductase 1	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate epimerase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Serine hydroxymethyltransferase (EC 2.1.2.1)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidylate synthase (EC 2.1.1.45)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidine kinase (EC 2.7.1.21)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase II (EC 3.5.4.25)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
S-adenosylmethionine synthetase (EC 2.5.1.6)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidylate synthase thyX (EC 2.1.1.-)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
tRNA:m(5)U-54 MTase gid	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
ATPase component of general energizing module of ECF transporters	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Transmembrane component of general energizing module of ECF transporters	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG0488: ATPase components of ABC transporters with duplicated ATPase domains	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative dihydrofolate reductase 3	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative dihydrofolate reductase 2	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative para-aminobenzoate biosynthesis enzyme CT610	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative Folylglutamate Synthase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Putative DHNTP pyrophosphatase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Substrate-specific component FolT of folate ECF transporter	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Non functional Dihydropteroate synthase 2	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate pyrophosphohydolase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Related to Dihydropteroate synthase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
MptD, archaeal dihydroneopterin aldolase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
MptE, archaeal 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin phosphate phosphatase	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate transporter 3	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
PTPS-VI	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
PTPS-V	Test_-_Folate	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
2-dehydro-3-deoxygluconate aldolase (EC 4.1.2-)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
D-glycerate 2-kinase (EC 2.7.1.-)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Gluconate dehydratase (EC 4.2.1.39)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Gluconolactonase (EC 3.1.1.17)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Glucose 1-dehydrogenase (EC 1.1.1.47)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (EC 1.2.1.9)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Altronate dehydratase (EC 4.2.1.7)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Hexokinase (EC 2.7.1.1)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Aldose 1-epimerase (EC 5.1.3.3)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
D-mannonate oxidoreductase (EC 1.1.1.57)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Glucokinase (EC 2.7.1.2)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Gluconate utilization system Gnt-I transcriptional repressor	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Gluconokinase (EC 2.7.1.12)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Glucose-1-phosphatase (EC 3.1.3.10)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Mannonate dehydratase (EC 4.2.1.8)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Phosphogluconate dehydratase (EC 4.2.1.12)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Uronate isomerase (EC 5.3.1.12)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Aldehyde dehydrogenase (EC 1.2.1.3)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Polyphosphate glucokinase (EC 2.7.1.63)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, cyanobacterial	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
1,4-lactonase (EC 3.1.1.25)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
L-arabinolactonase (EC 3.1.1.15)	Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Predicted broad substrate specificity phosphatase	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family 1	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family 2	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family 3	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Carboxyl-terminal protease (EC 3.4.21.102)	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family 5	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family, Lmo0556 homolog	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family, Lmo0907 homolog	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family (Rhiz)	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Phosphoglycerate mutase family 4	Phosphoglycerate_mutase_protein_family	Experimental Subsystems	
Regulator of chitobiose utilization ChiR, ROK family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Sugar_utilization_in_Thermotogales	Carbohydrates	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-hexosaminidase (EC 3.2.1.52)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Mannose-responsive regulator of mannose and mannoside utilization, ROK family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Mannoside ABC transport system, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted cellobiose ABC transport system, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted cellobiose ABC transport system, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted cellobiose ABC transport system, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted cellobiose ABC transport system, ATP-binding protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted cellobiose ABC transport system, ATP-binding protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted regulator of cellobiose and glucan utilization, LacI family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Endo-1,4-beta-mannosidase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Mannose-6-phosphate isomerase (EC 5.3.1.8)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted fucose-glucose oligosaccharide utilization regulator, LacI family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative fucose-glucose oligosaccharide ABC transport system, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative fucose-glucose oligosaccharide ABC transport system, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative fucose-glucose oligosaccharide ABC transport system, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose oligosaccharides ABC transporter, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose oligosaccharides ABC transporter, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose oligosaccharides ABC transporter, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose oligosaccharides ABC transporter, ATP-binding protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose oligosaccharides ABC transporter, ATP-binding protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Cellobiose phosphorylase (EC 2.4.1.-)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted regulator of glucose and trehalose utilization, ROK family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-glucosidase (EC 3.2.1.21)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose ABC transporter, substrate-binding component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose ABC transporter, permease component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose ABC transporter, ATP-binding component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylulose kinase (EC 2.7.1.17)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose isomerase (EC 5.3.1.5)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylose-responsive transcription regulator, ROK family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical protein, DUF192 family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glucokinase (EC 2.7.1.2)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-xylosidase (EC 3.2.1.37)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Acetyl xylan esterase (EC 3.1.1.41)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative alpha-glucosidase (EC 3.2.1.-)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted xylose oligosaccharide ABC transporter, substrate-binding component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-galactosidase (EC 3.2.1.23)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylan oligosaccharide ABC transporter, permease component 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylan oligosaccharide ABC transporter, permease component 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Xylan oligosaccharide ABC transporter, ATP-binding protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-glucuronidase (EC 3.2.1.139)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Cellobiose-responsive regulator of beta-glucosides utilization, ROK family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-glucoside ABC transport system, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-glucoside ABC transport system, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-glucoside ABC transport system, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-glucoside ABC transport system, ATP-binding protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-glucoside ABC transport system, ATP-binding protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Laminarinase (EC 3.2.1.39)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Uronate isomerase (EC 5.3.1.12)	Sugar_utilization_in_Thermotogales	Carbohydrates	
D-mannonate oxidoreductase (EC 1.1.1.57)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Mannonate dehydratase (EC 4.2.1.8)	Sugar_utilization_in_Thermotogales	Carbohydrates	
D-tagaturonate epimerase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Novel D-mannonate-D-gluconate epimerase	Sugar_utilization_in_Thermotogales	Carbohydrates	
D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent	Sugar_utilization_in_Thermotogales	Carbohydrates	
Transcriptional repressor of arabinoside utilization operon, GntR family	Sugar_utilization_in_Thermotogales	Carbohydrates	
L-arabinose isomerase (EC 5.3.1.4)	Sugar_utilization_in_Thermotogales	Carbohydrates	
alternative Ribulokinase (EC 2.7.1.16)	Sugar_utilization_in_Thermotogales	Carbohydrates	
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-N-arabinofuranosidase II (EC 3.2.1.55)	Sugar_utilization_in_Thermotogales	Carbohydrates	
L-arabinose-specific 1-epimerase (mutarotase)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted alpha-arabinosides ABC transport system, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted alpha-arabinosides ABC transport system, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted alpha-arabinosides ABC transport system, substrate-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted arabinoside ABC transporter 2, permease component 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted arabinoside ABC transporter 2, permease component 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted arabinoside ABC transporter 2, periplasmic sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative glycosyl hydrolase of unknown function (DUF1680)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Iron-containing alcohol dehydrogenase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Acetyl xylan esterase XylU (EC 3.1.1.41)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-1,4-amylase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Pectate lyase precursor (EC 4.2.2.2)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Polygalacturonase (EC 3.2.1.15)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-1,4-digalacturonate ABC transporter, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-1,4-digalacturonate ABC transporter, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Regulator of pectin and galacturonate utilization, GntR family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alcohol dehydrogenase, zinc-containing	Sugar_utilization_in_Thermotogales	Carbohydrates	
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Gluconokinase (EC 2.7.1.12)	Sugar_utilization_in_Thermotogales	Carbohydrates	
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Sugar_utilization_in_Thermotogales	Carbohydrates	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted glycosylase, COG2152	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-mannosidase (EC 3.2.1.24)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted mannobiose phosphorylase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Rhamnulokinase (EC 2.7.1.5)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycoside hydrolase family 2, sugar binding	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted rhamnose oligosaccharide ABC transporter, permease component 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted rhamnose oligosaccharide ABC transporter, permease component 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter, ATP-binding protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter, ATP-binding protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-galactosidase (EC 3.2.1.23), LacA family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Galactokinase (EC 2.7.1.6)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative beta-glucuronidase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-galactosidase (EC 3.2.1.23), LacZ family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-galactosidase (EC 3.2.1.22)	Sugar_utilization_in_Thermotogales	Carbohydrates	
UDP-glucose 4-epimerase (EC 5.1.3.2)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Transaldolase (EC 2.2.1.2)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Thermostable mannitol dehydrogenase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Fructokinase (EC 2.7.1.4)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-L-fucosidase (EC 3.2.1.51)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative L-fucose isomerase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Extracellular endo-1,4-glucanase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted dehydrogenase in CelR regulon, COG0673	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted aldo/keto reductase in CelR regulon, COG4989	Sugar_utilization_in_Thermotogales	Carbohydrates	
Trehalose synthase, nucleoside diphosphate glucose dependent	Sugar_utilization_in_Thermotogales	Carbohydrates	
Regulator of trehalose utilization TreR, ROK family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-fructosidase BfrA	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted chitobiose ABC transport system, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted chitobiose ABC transport system, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted chitobiose ABC transport system II, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Galactose oligosaccharide ABC transporter, substrate binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Galactose oligosaccharide ABC transporter, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Galactose oligosaccharide ABC transporter, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE	Sugar_utilization_in_Thermotogales	Carbohydrates	
Maltose/maltodextrin ABC transporter, permease protein MalF	Sugar_utilization_in_Thermotogales	Carbohydrates	
Maltose/maltodextrin ABC transporter, permease protein MalG	Sugar_utilization_in_Thermotogales	Carbohydrates	
Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Maltodextrin glucosidase (EC 3.2.1.20)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Neopullulanase (EC 3.2.1.135)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Pullulanase (EC 3.2.1.41)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted regulator of galactoside utilization, LacI family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-mannan and fructose induced hypothetical ABC transporter, periplasmic oligopeptide-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-mannan and fructose induced hypothetical ABC transporter, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-mannan and fructose induced hypothetical ABC transporter, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-mannan and fructose induced hypothetical ABC transporter, ATP-binding protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-mannan and fructose induced hypothetical ABC transporter, ATP-binding protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Endo-mannanase (EC 3.2.1.78)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Endoglucanase (EC 3.2.1.4)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative methyl oligogalcturonate esterase	Sugar_utilization_in_Thermotogales	Carbohydrates	
PTS system, fructose-specific IIA component	Sugar_utilization_in_Thermotogales	Carbohydrates	
PTS system, fructose-specific IIB component (EC 2.7.1.69)	Sugar_utilization_in_Thermotogales	Carbohydrates	
PTS system, fructose-specific IIC component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted regulator of fructose utilization, DeoR family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Sugar_utilization_in_Thermotogales	Carbohydrates	
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type	Sugar_utilization_in_Thermotogales	Carbohydrates	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Transketolase (EC 2.2.1.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Extracellular endo-1,4-beta-glucanase (EC 3.2.1.4)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical protein TM0026, BglR regulon	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-glucosidase A (EC 3.2.1.21)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Trehalose ABC transporter, substrate-binding component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Trehalose ABC transporter, permease component 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Trehalose ABC transporter, permease component 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glucose ABC transporter, substrate-binding component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glucose ABC transporter, permease component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glucose ABC transporter, ATP-binding component	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative unsaturated glucuronyl hydrolase	Sugar_utilization_in_Thermotogales	Carbohydrates	
6-phosphofructokinase (EC 2.7.1.11)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Novel N-acetylmannosamine kinase	Sugar_utilization_in_Thermotogales	Carbohydrates	
D-arabitol dehydrogenase (EC 1.1.1.250)	Sugar_utilization_in_Thermotogales	Carbohydrates	
4-alpha-glucanotransferase MgtA (EC 2.4.1.25)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Intracellular alpha-amylase (EC 3.2.1.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
D-glycerate 2-kinase (EC 2.7.1.-)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycerol kinase (EC 2.7.1.30)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycerol uptake operon antiterminator regulatory protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Phosphoglycerate mutase (EC 5.4.2.11)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Enolase (EC 4.2.1.11)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Pyruvate kinase (EC 2.7.1.40)	Sugar_utilization_in_Thermotogales	Carbohydrates	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Triosephosphate isomerase (EC 5.3.1.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Phosphoglycerate kinase (EC 2.7.2.3)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical sugar ABC transporter, solute-binding protein UgtE	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical sugar ABC transporter, membrane protein UgtF	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical sugar ABC transporter, membrane protein UgtG	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alpha-mannosidase-related protein, family 38	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted sugar catabolic transcriptional regulator UgtR, RpiR family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Unknown carbohydrate transporter from TRAP family, substrate-binding component UctP	Sugar_utilization_in_Thermotogales	Carbohydrates	
Unknown carbohydrate transporter from TRAP family, small transmembrane component UctM	Sugar_utilization_in_Thermotogales	Carbohydrates	
Unknown carbohydrate transporter from TRAP family, large transmembrane component UctQ	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted sugar dehydrogenase TM0325	Sugar_utilization_in_Thermotogales	Carbohydrates	
Unknown carbohydrate utilization transcriptional regulator UctR, RpiR family	Sugar_utilization_in_Thermotogales	Carbohydrates	
1-phosphofructokinase (EC 2.7.1.56)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Beta-mannosidase Man2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Maltodextrin glycosyltransferase MmtA	Sugar_utilization_in_Thermotogales	Carbohydrates	
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Phosphocarrier protein of PTS system	Sugar_utilization_in_Thermotogales	Carbohydrates	
Phosphoglycerate dehydrogenase TM0327, putative	Sugar_utilization_in_Thermotogales	Carbohydrates	
Putative uncharacterized protein TM0063	Sugar_utilization_in_Thermotogales	Carbohydrates	
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Regulator of myo-inositol utilization IolR, ROK family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted keto-inosose hydrolase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Novel 5-ketogluconate epimerase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Novel inositol-related kinase, PfkB family (EC 2.7.1.12)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Myo-inositol-1-phosphate ABC transporter, periplasmic sugar-binding protein InoE	Sugar_utilization_in_Thermotogales	Carbohydrates	
Myo-inositol-1-phosphate ABC transporter, permease protein InoF	Sugar_utilization_in_Thermotogales	Carbohydrates	
Myo-inositol-1-phosphate ABC transporter, permease protein InoG	Sugar_utilization_in_Thermotogales	Carbohydrates	
Myo-inositol-1-phosphate ABC transporter, ATP-binding protein InoK	Sugar_utilization_in_Thermotogales	Carbohydrates	
Inositol-related sugar-phosphate epimerase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted inosose dehydrogenase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted regulator of alpha-mannoside utilization, LacI family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted alpha-mannoside ABC transporter, substrate binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted alpha-mannoside ABC transporter, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted alpha-mannoside ABC transporter, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted L-rhamnose mutarotase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Alternative L-rhamnose isomerase (EC 5.3.1.14)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Ribokinase (EC 2.7.1.15)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
D-ribose pyranase (EC 5.5.1.n1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted regulator of ribose utilization, LacI family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Transketolase, N-terminal section (EC 2.2.1.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Transketolase, C-terminal section (EC 2.2.1.1)	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted D-arabinose isomerase	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted D-ribulose kinase, FGGY family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical protein TM0950	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical protein, no COGs	Sugar_utilization_in_Thermotogales	Carbohydrates	
Carbohydrate-binding, CenC domain protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycerol uptake facilitator protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Extracellular alpha-amylase precursor	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter type II, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter type II, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted galactoside ABC transporter type II, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted beta-glucoside-regulated ABC transport system, sugar binding component, COG1653	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted beta-glucoside-regulated ABC transport system, permease component 1, COG1175	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted beta-glucoside-regulated ABC transport system, permease component 2, COG0395	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical sugar kinase TM0795, PfkB family	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted trehalose ABC transporter, substrate-binding component, Archaea-type	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted trehalose ABC transporter, permease component 1, Archaea-type	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted trehalose ABC transporter, permease component 2, Archaea-type	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted chitobiose ABC transport system II, sugar-binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted chitobiose ABC transport system II, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted chitobiose ABC transport system, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Hypothetical sugar ABC transporter, ATP-binding UgtK	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted lactose ABC transporter, substrate binding protein	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted lactose ABC transporter, permease protein 1	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted lactose ABC transporter, permease protein 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon	Sugar_utilization_in_Thermotogales	Carbohydrates	
Glycosyl transferase, family 2	Sugar_utilization_in_Thermotogales	Carbohydrates	
L-aspartate oxidase (EC 1.4.3.16)	NAD_and_NADP_-_test_subsystem		
Quinolinate synthetase (EC 2.5.1.72)	NAD_and_NADP_-_test_subsystem		
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	NAD_and_NADP_-_test_subsystem		
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	NAD_and_NADP_-_test_subsystem		
NAD synthetase (EC 6.3.1.5)	NAD_and_NADP_-_test_subsystem		
Glutamine amidotransferase chain of NAD synthetase	NAD_and_NADP_-_test_subsystem		
NAD kinase (EC 2.7.1.23)	NAD_and_NADP_-_test_subsystem		
Nicotinamidase (EC 3.5.1.19)	NAD_and_NADP_-_test_subsystem		
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	NAD_and_NADP_-_test_subsystem		
Enolase (EC 4.2.1.11)	NAD_and_NADP_-_test_subsystem		
Kynurenine formamidase, bacterial (EC 3.5.1.9)	NAD_and_NADP_-_test_subsystem		
L-Aspartate dehydrogenase (EC 1.4.1.21)	NAD_and_NADP_-_test_subsystem		
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	NAD_and_NADP_-_test_subsystem		
Tryptophan 2,3-dioxygenase (EC 1.13.11.11)	NAD_and_NADP_-_test_subsystem		
Kynureninase (EC 3.7.1.3)	NAD_and_NADP_-_test_subsystem		
Ribosyl nicotinamide transporter, PnuC-like	NAD_and_NADP_-_test_subsystem		
N-Ribosylnicotinamide phosphorylase (EC 2.4.2.1)	NAD_and_NADP_-_test_subsystem		
Niacin transporter NiaP	NAD_and_NADP_-_test_subsystem		
ATPase component of general energizing module of ECF transporters	NAD_and_NADP_-_test_subsystem		
Transmembrane component of general energizing module of ECF transporters	NAD_and_NADP_-_test_subsystem		
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	NAD_and_NADP_-_test_subsystem		
Ribosylnicotinamide kinase (EC 2.7.1.22)	NAD_and_NADP_-_test_subsystem		
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	NAD_and_NADP_-_test_subsystem		
Substrate-specific component NiaX of predicted niacin ECF transporter	NAD_and_NADP_-_test_subsystem		
Kynurenine 3-monooxygenase (EC 1.14.13.9)	NAD_and_NADP_-_test_subsystem		
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)	NAD_and_NADP_-_test_subsystem		
Indoleamine 2,3-dioxygenase (EC 1.13.11.52)	NAD_and_NADP_-_test_subsystem		
Kynurenine formamidase (EC 3.5.1.9)	NAD_and_NADP_-_test_subsystem		
NMN synthetase (EC 6.3.1.-)	NAD_and_NADP_-_test_subsystem		
Nicotinate-nucleotide adenylyltransferase, NadM family (EC 2.7.7.18)	NAD_and_NADP_-_test_subsystem		
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	NAD_and_NADP_-_test_subsystem		
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), eukaryotic PNAT family	NAD_and_NADP_-_test_subsystem		
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22)	NAD_and_NADP_-_test_subsystem		
Niacin transporter in yeast, DAL5 family	NAD_and_NADP_-_test_subsystem		
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1)	NAD_and_NADP_-_test_subsystem		
Possible carbon dioxide concentrating mechanism protein CcmK	CBSS-1148.35.peg.210		
Carboxysome protein CcmL	CBSS-1148.35.peg.210		
Carboxysome protein CcmM	CBSS-1148.35.peg.210		
Carboxysome protein CcmN	CBSS-1148.35.peg.210		
NADH dehydrogenase subunit 5, Involved in CO2 fixation	CBSS-1148.35.peg.210		
Low-affinity CO2 hydration protein CphX	CBSS-1148.35.peg.210		
NADH dehydrogenase subunit 4, Involved in CO2 fixation	CBSS-1148.35.peg.210		
Carbon dioxide concentrating mechanism protein CcmO	CBSS-1148.35.peg.210		
RuBisCO operon transcriptional regulator	CBSS-1148.35.peg.210		
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	CBSS-1148.35.peg.210		
Alr1295 protein	CBSS-1148.35.peg.210		
Possible RuBisCo chaperonin RbcX	CBSS-1148.35.peg.210		
Protein phosphatase 2C (EC 3.1.3.16)	CBSS-1148.35.peg.210		
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	CBSS-1148.35.peg.210		
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	CBSS-1148.35.peg.210		
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	CBSS-1148.35.peg.210		
COG0631: Serine/threonine protein phosphatase	CBSS-1148.35.peg.210		
Aspartate ammonia-lyase (EC 4.3.1.1)	CBSS-1148.35.peg.210		
carbon dioxide concentrating mechanism protein	CBSS-1148.35.peg.210		
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Phosphate acetyltransferase (EC 2.3.1.8)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetate kinase (EC 2.7.2.1)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acylphosphate phosphohydrolase (EC 3.6.1.7), putative	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetate permease ActP (cation/acetate symporter)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Putative membrane protein, clustering with ActP	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Protein acetyltransferase	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
NAD-dependent protein deacetylase of SIR2 family	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Aldehyde dehydrogenase (EC 1.2.1.3)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Pyruvate decarboxylase (EC 4.1.1.1)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Lactate 2-monooxygenase (EC 1.13.12.4)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Lactate oxidase (EC 1.13.12.-)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
NAD-independent protein deacetylase AcuC	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Hypothetical protein AcuB, not involved in acetoin utilization	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetyl-CoA synthetase (ADP-forming) alpha chain (EC 6.2.1.13)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Pyruvate oxidase (EC 1.2.3.3)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Glycine reductase component B alpha subunit (EC 1.21.4.2)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Betaine reductase component B alpha subunit (EC 1.21.4.4)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Acetyl-CoA synthetase (ADP-forming) beta chain (EC 6.2.1.13)	Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Fructose-6-phosphate phosphoketolase (EC 4.1.2.22)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Acetate kinase (EC 2.7.2.1)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Phosphate acetyltransferase (EC 2.3.1.8)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase (EC 1.2.1.10)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Alcohol dehydrogenase (EC 1.1.1.1)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
L-lactate dehydrogenase (EC 1.1.1.27)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Pyruvate formate-lyase (EC 2.3.1.54)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Lactate oxidase (EC 1.13.12.-)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Pyruvate oxidase (EC 1.2.3.3)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
D-lactate dehydrogenase (EC 1.1.1.28)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Formate efflux transporter (TC 2.A.44 family)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Lactate 2-monooxygenase (EC 1.13.12.4)	Fermentations_in_Streptococci	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase, ethanolamine utilization cluster	Fermentations_in_Streptococci	Carbohydrates	Fermentation
CoA-acylating propionaldehyde dehydrogenase	Fermentations_in_Streptococci	Carbohydrates	Fermentation
D-galactonate transporter	D-galactonate_catabolism	Carbohydrates	Monosaccharides
Galactonate dehydratase (EC 4.2.1.6)	D-galactonate_catabolism	Carbohydrates	Monosaccharides
2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	D-galactonate_catabolism	Carbohydrates	Monosaccharides
2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)	D-galactonate_catabolism	Carbohydrates	Monosaccharides
D-Galactonate repressor DgoR	D-galactonate_catabolism	Carbohydrates	Monosaccharides
D-galactonate regulator, IclR family	D-galactonate_catabolism	Carbohydrates	Monosaccharides
Ribulokinase (EC 2.7.1.16)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabinose isomerase (EC 5.3.1.4)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Arabinose-proton symporter	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alpha-arabinosides ABC transport system, permease protein 2	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alpha-arabinosides ABC transport system, substrate-binding protein	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alpha-arabinosides ABC transport system, permease protein 1	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Transcriptional repressor of arabinoside utilization operon, GntR family	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Arabinose operon protein AraL	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Arabinose operon regulatory protein	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabinose transport system permease protein (TC 3.A.1.2.2)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Protein AraJ precursor	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Possible GPH family transporter (TC 2.A.2) for arabinosides	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabinose-specific 1-epimerase (mutarotase)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
alternative Ribulokinase (EC 2.7.1.16)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of the arabinose operon in Shewanella, GntR family	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabinolactonase (EC 3.1.1.15)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabonate dehydratase (EC 4.2.1.25)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
L-arabinose 1-dehydrogenase (EC 1.1.1.46)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, permease protein 1	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, ATP-binding protein	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, permease protein 2	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Arabinose-regulated TonB-dependent outer membrane receptor	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alternative L-arabinose isomerase (EC 5.3.1.4)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Putative oxidoreductase in arabinose utilization cluster	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted arabinose ABC transporter, permease protein 1	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted arabinose ABC transporter, permease protein 2	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted arabinose ABC transporter, substrate binding protein	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase II (EC 3.2.1.55)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Predicted L-arabinose isomerase (EC 5.3.1.4)	L-Arabinose_utilization	Carbohydrates	Monosaccharides
Glucokinase (EC 2.7.1.2)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (EC 1.2.1.9)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1), partially deleted	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Beta-glucosidase (EC 3.2.1.21)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Pyruvate oxidase (EC 1.2.3.3)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)	Glycolysis_and_Gluconeogenesis_in_Streptococci	Carbohydrates	Central carbohydrate metabolism
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	YqeK-NadD_fusion	Experimental Subsystems	
Ribosomal silencing factor RsfA (former Iojap)	YqeK-NadD_fusion	Experimental Subsystems	
FIG004454: RNA binding protein	YqeK-NadD_fusion	Experimental Subsystems	
GTP-binding protein Obg	YqeK-NadD_fusion	Experimental Subsystems	
LSU ribosomal protein L27p	YqeK-NadD_fusion	Experimental Subsystems	
LSU ribosomal protein L21p	YqeK-NadD_fusion	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	YqeK-NadD_fusion	Experimental Subsystems	
NAD kinase (EC 2.7.1.23)	YqeK-NadD_fusion	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	YqeK-NadD_fusion	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	YqeK-NadD_fusion	Experimental Subsystems	
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	YqeK-NadD_fusion	Experimental Subsystems	
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	YqeK-NadD_fusion	Experimental Subsystems	
Nicotinamidase (EC 3.5.1.19)	YqeK-NadD_fusion	Experimental Subsystems	
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	YqeK-NadD_fusion	Experimental Subsystems	
Hydrolase (HAD superfamily), YqeK	YqeK-NadD_fusion	Experimental Subsystems	
GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit	YqeK-NadD_fusion	Experimental Subsystems	
L-Aspartate dehydrogenase (EC 1.4.1.21)	YqeK-NadD_fusion	Experimental Subsystems	
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate synthase (EC 4.2.3.4)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase II (EC 4.2.1.10)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase I (EC 2.7.1.71)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) alpha sub-homology division	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate synthase (EC 4.2.3.5)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase I (EC 4.2.1.10)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) beta sub-homology division	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase III (EC 2.7.1.71)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Transcriptional repressor protein TyrR	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Transcriptional repressor protein TrpR	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.2.1.10)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3,7-dideoxy-D-threo-hepto-2, 6-diulosonate synthase (EC 1.4.1.24)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase II (EC 2.7.1.71)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Regulatory protein of benzoate catabolism	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
EPT-like Enolpyruvate transferase (EPSP synthase-like (EC 2.5.1.19))	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Repressor Protein of Quinate Catabolism	Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phenazine biosynthesis protein PhzF like	YHI9	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	YHI9	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	YHI9	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	YHI9	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	YHI9	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	YHI9	Experimental Subsystems	
Phenazine biosynthesis protein PhzF	YHI9	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	FolB-duf556	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	FolB-duf556	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	FolB-duf556	Experimental Subsystems	
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain	FolB-duf556	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	FolB-duf556	Experimental Subsystems	
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	FolB-duf556	Experimental Subsystems	
duf556 family protein	FolB-duf556	Experimental Subsystems	
DUF447 family protein	FolB-duf556	Experimental Subsystems	
Related to Dihydropteroate synthase	FolB-duf556	Experimental Subsystems	
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	FolB-duf556	Experimental Subsystems	
MptD, archaeal dihydroneopterin aldolase	FolB-duf556	Experimental Subsystems	
MptE, archaeal 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	FolB-duf556	Experimental Subsystems	
Archaeal flavoprotein COG1036	FolB-duf556	Experimental Subsystems	
F420-dependent methylenetetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	FolB-duf556	Experimental Subsystems	
Anthranilate synthase, aminase component (EC 4.1.3.27)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase alpha chain (EC 4.2.1.20)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase beta chain (EC 4.2.1.20)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aminodeoxychorismate lyase (EC 4.1.3.38)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Tryptophan_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Membrane protein YhcB, DUF1043	DUF1043	Experimental Subsystems	
Outer membrane stress sensor protease DegQ, serine protease	DUF1043	Experimental Subsystems	
ATPase, AFG1 family	DUF1043	Experimental Subsystems	
FIG021952: putative membrane protein	DUF1043	Experimental Subsystems	
Rod shape-determining protein MreC	DUF1043	Experimental Subsystems	
Rod shape-determining protein MreD	DUF1043	Experimental Subsystems	
Rod shape-determining protein RodA	DUF1043	Experimental Subsystems	
Inner membrane protein yciS	DUF1043	Experimental Subsystems	
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate synthase (EC 4.2.3.4)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase I (EC 4.2.1.10)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase I (EC 2.7.1.71)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) alpha sub-homology division	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate synthase (EC 4.2.3.5)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase I (EC 5.4.99.5)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydratase (EC 4.2.1.51)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydrogenase (EC 1.3.1.12)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aromatic amino acid aminotransferase gamma (EC 2.6.1.57)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	Chorismate_biosynthesis_in_Streptococci	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Adenylosuccinate synthetase (EC 6.3.4.4)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Histidyl-tRNA synthetase (EC 6.1.1.21)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
tRNA-His	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase (EC 2.4.2.17)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase (EC 3.1.3.15)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Histidinol dehydrogenase (EC 1.1.1.23)	Histidine_Biosynthesis_in_Streptococci	Amino Acids and Derivatives	Histidine Metabolism
Antiphagocytic M protein	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
C3 family ADP-ribosyltransferase (EC 2.4.2.-)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
C5a peptidase (EC 3.4.21.-)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
CAMP factor	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Collagen-like surface protein	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Fibronectin-binding protein	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Hyaluronan synthase (EC 2.4.1.212)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Hyaluronate lyase precursor (EC 4.2.2.1)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Immunoglobulin G-endopeptidase (IdeS)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Mitogenic factor 2	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Mitogenic factor 3	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Nicotine adenine dinucleotide glycohydrolase (NADGH) (EC 3.2.2.5)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Protein G-related alpha 2 macroglobulin-binding protein (GRAB)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Secreted Endo-beta-N-acetylglucosaminidase (EndoS)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Serine endopeptidase ScpC (EC 3.4.21.-)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal inhibitor of complement (SIC)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal mitogenic exotoxin Z (SmeZ)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin B (SpeB)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin C (SpeC)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin G (SpeG)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin H (SpeH)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin I (SpeI)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin J (SpeJ)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptodornase B	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptokinase	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptolysin S precursor (SagA)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin A (SpeA)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin G (SpeG) fragment	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin K (SpeK)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptodornase D	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Mitogenic factor 4	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal superantigen A (SSA)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin L (SpeL)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin M (SpeM)	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Fibrinogen-binding protein	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptococcal pyrogenic exotoxin J (SpeJ) fragment	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Serum opacity factor	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Streptolysin O	Streptococcus_pyogenes_Virulome	Virulence, Disease and Defense	
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalamin biosynthesis protein CobG	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-3b C17-methyltransferase	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Precorrin-6A synthase (EC 2.1.1.152)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobyrinic acid A,C-diamide synthase	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
ChlD component of cobalt chelatase involved in B12 biosynthesis	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
ChlI component of cobalt chelatase involved in B12 biosynthesis	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobyric acid synthase (EC 6.3.5.10)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalamin synthase (EC 2.7.8.26)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalamin biosynthesis protein CbiG	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-6 synthase, anaerobic	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalamin synthase	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
CobW GTPase involved in cobalt insertion for B12 biosynthesis	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-3b C17-methyltransferase (EC 2.1.1.131)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-5B (C1)-methyltransferase (EC 2.1.1.195)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-6A reductase (EC 1.3.1.54)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-7 (C5)-methyltransferase (EC 2.1.1.289)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-6B C15-methyltransferase [decarboxylating] (EC 2.1.1.196)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Cobalt-precorrin-8 methylmutase (EC 5.4.99.60)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
CobN component of cobalt chelatase involved in B12 biosynthesis (EC 6.6.1.2)	Cobalamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	Bacterial cytostatics,differentiation factors and antibiotics
Biotin synthesis protein BioC	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Dethiobiotin synthetase (EC 6.3.3.3)	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Biotin synthase (EC 2.8.1.6)	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Biotin synthesis protein BioH	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pimeloyl-CoA synthase (EC 6.2.1.14)	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Biotin synthesis protein BioG	Biotin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	Project_2	Experimental Subsystems	
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Project_2	Experimental Subsystems	
Glycine/D-amino acid oxidases (deaminating)	Project_2	Experimental Subsystems	
Sarcosine oxidase beta subunit (EC 1.5.3.1)	Project_2	Experimental Subsystems	
L-pipecolate oxidase (1.5.3.7)	Project_2	Experimental Subsystems	
Putative FAD dependent oxidoreductase	Project_2	Experimental Subsystems	
L-pipecolate dehydrogenase (EC 1.5.99.3)	Project_2	Experimental Subsystems	
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Riboflavin kinase (EC 2.7.1.26)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
FMN adenylyltransferase (EC 2.7.7.2)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
3,4-dihydroxy-2-butanone 4-phosphate synthase	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Adenosine deaminase (EC 3.5.4.4), alternative form	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Riboflavin synthase alpha chain (EC 2.5.1.9)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
riboflavin synthase subunit alpha	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
riboflavin synthase, alpha subunit	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
6,7-dimethyl-8-ribityllumazine synthase	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain)	Riboflavin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
2-dehydropantoate 2-reductase (EC 1.1.1.169)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pantoate--beta-alanine ligase (EC 6.3.2.1)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Aspartate 1-decarboxylase (EC 4.1.1.11)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	Pantothenate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
PdxA-like	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Novel pyridoxal kinase, thiD family (EC 2.7.1.35)	Pyridoxin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Niacin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	Niacin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	Niacin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	Niacin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Niacin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Alternative para-aminobenzoate biosynthesis enzyme CT610	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Aminodeoxychorismate lyase (EC 4.1.3.38)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Dihydrofolate synthase (EC 6.3.2.12)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Folylpolyglutamate synthase (EC 6.3.2.17)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Dihydrofolate reductase (EC 1.5.1.3)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Alternative dihydrofolate reductase 3	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Alternative dihydrofolate reductase 2	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	Folate_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-3b C17-methyltransferase (EC 2.1.1.131)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-5B (C1)-methyltransferase (EC 2.1.1.195)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-6A reductase (EC 1.3.1.54)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-7 (C5)-methyltransferase (EC 2.1.1.289)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-6B C15-methyltransferase [decarboxylating] (EC 2.1.1.196)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-8 methylmutase (EC 5.4.99.60)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobyric acid synthase (EC 6.3.5.10)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalamin synthase (EC 2.7.8.26)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalamin biosynthesis protein CbiG	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-3b C17-methyltransferase	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-6 synthase, anaerobic	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobyrinic acid A,C-diamide synthase	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalamin synthase	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
ChlD component of cobalt chelatase involved in B12 biosynthesis	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
ChlI component of cobalt chelatase involved in B12 biosynthesis	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
CobN component of cobalt chelatase involved in B12 biosynthesis (EC 6.6.1.2)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2)	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
Cobalamin biosynthesis protein CobG	Cobalamin_biosynthesis_HGM	Experimental Subsystems	
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)	IronAcqVDC	Iron acquisition and metabolism	
Aerobactin siderophore receptor IutA	IronAcqVDC	Iron acquisition and metabolism	
Amide synthase component of siderophore synthetase	IronAcqVDC	Iron acquisition and metabolism	
Bacterioferritin	IronAcqVDC	Iron acquisition and metabolism	
Bacterioferritin-associated ferredoxin	IronAcqVDC	Iron acquisition and metabolism	
Catechol siderophore ABC transporter, substrate-binding protein	IronAcqVDC	Iron acquisition and metabolism	
Ferric aerobactin ABC transporter, ATPase component	IronAcqVDC	Iron acquisition and metabolism	
Ferric aerobactin ABC transporter, periplasmic substrate binding protein	IronAcqVDC	Iron acquisition and metabolism	
Ferric aerobactin ABC transporter, permease component	IronAcqVDC	Iron acquisition and metabolism	
Ferric iron ABC transporter, ATP-binding protein	IronAcqVDC	Iron acquisition and metabolism	
Ferric iron ABC transporter, iron-binding protein	IronAcqVDC	Iron acquisition and metabolism	
Ferric iron ABC transporter, permease protein	IronAcqVDC	Iron acquisition and metabolism	
Ferric uptake regulation protein FUR	IronAcqVDC	Iron acquisition and metabolism	
Ferric vulnibactin receptor VuuA	IronAcqVDC	Iron acquisition and metabolism	
Ferrous iron transport protein A	IronAcqVDC	Iron acquisition and metabolism	
Ferrous iron transport protein B	IronAcqVDC	Iron acquisition and metabolism	
Ferrous iron transport protein C	IronAcqVDC	Iron acquisition and metabolism	
Hemin ABC transporter, permease protein	IronAcqVDC	Iron acquisition and metabolism	
Hypothetical protein in aerobactin uptake cluster	IronAcqVDC	Iron acquisition and metabolism	
Hypothetical protein in cluster with HutR, VCA0066 homolog	IronAcqVDC	Iron acquisition and metabolism	
Hypothetical protein in cluster with HutR, VCA0067 homolog	IronAcqVDC	Iron acquisition and metabolism	
Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase	IronAcqVDC	Iron acquisition and metabolism	
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	IronAcqVDC	Iron acquisition and metabolism	
Isochorismate pyruvate-lyase of siderophore biosynthesis	IronAcqVDC	Iron acquisition and metabolism	
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis	IronAcqVDC	Iron acquisition and metabolism	
Non-ribosomal peptide synthetase modules, siderophore biosynthesis	IronAcqVDC	Iron acquisition and metabolism	
Phosphopantetheinyl transferase component of siderophore synthetase (EC 2.7.8.-)	IronAcqVDC	Iron acquisition and metabolism	
Protease II (EC 3.4.21.83)	IronAcqVDC	Iron acquisition and metabolism	
Putative heme iron utilization protein	IronAcqVDC	Iron acquisition and metabolism	
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein	IronAcqVDC	Iron acquisition and metabolism	
TonB-dependent heme and hemoglobin receptor HutA	IronAcqVDC	Iron acquisition and metabolism	
TonB-dependent heme receptor HutR	IronAcqVDC	Iron acquisition and metabolism	
TonB-dependent receptor	IronAcqVDC	Iron acquisition and metabolism	
Transcriptional repressor of aerobactin receptor iutR	IronAcqVDC	Iron acquisition and metabolism	
Vulnibactin utilization protein VuuB	IronAcqVDC	Iron acquisition and metabolism	
Enterobactin receptor IrgA	IronAcqVDC	Iron acquisition and metabolism	
Enterobactin receptor VctA	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin receptor ViuA	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, ATP-binding protein (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, ATP-binding protein ViuC (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein ViuD (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein ViuG (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, substrate-binding protein VctP (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, substrate-binding protein ViuP (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)	IronAcqVDC	Iron acquisition and metabolism	
Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)	IronAcqVDC	Iron acquisition and metabolism	
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)	IronAcqVDC	Iron acquisition and metabolism	
Ferrichrome-iron receptor	IronAcqVDC	Iron acquisition and metabolism	
Hypothetical protein colocalized with Enterobactin receptor VctA	IronAcqVDC	Iron acquisition and metabolism	
Iron-regulated virulence regulatory protein irgB	IronAcqVDC	Iron acquisition and metabolism	
Putative TonB-dependent heme receptor HasR	IronAcqVDC	Iron acquisition and metabolism	
Transcriptional regulator near Vibriobactin biosynthetic gene custer	IronAcqVDC	Iron acquisition and metabolism	
Transcriptional regulator, VCA0231 ortholog	IronAcqVDC	Iron acquisition and metabolism	
Vibriobactin utilization protein ViuB	IronAcqVDC	Iron acquisition and metabolism	
Catechol siderophore ABC transporter, ATP-binding component	IronAcqVDC	Iron acquisition and metabolism	
Catechol siderophore ABC transporter, permease component	IronAcqVDC	Iron acquisition and metabolism	
Utilization protein for unknown catechol-siderophore X	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein VctD (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6)	IronAcqVDC	Iron acquisition and metabolism	
Regulatory small RNA involved in iron homeostasis RyhB	IronAcqVDC	Iron acquisition and metabolism	
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC	IronAcqVDC	Iron acquisition and metabolism	
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD	IronAcqVDC	Iron acquisition and metabolism	
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB	IronAcqVDC	Iron acquisition and metabolism	
Ferric hydroxamate outer membrane receptor FhuA	IronAcqVDC	Iron acquisition and metabolism	
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	glycogen_metabolism	Carbohydrates	Polysaccharides
Maltodextrin phosphorylase (EC 2.4.1.1)	glycogen_metabolism	Carbohydrates	Polysaccharides
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	glycogen_metabolism	Carbohydrates	Polysaccharides
Alpha-amylase (EC 3.2.1.1)	glycogen_metabolism	Carbohydrates	Polysaccharides
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen debranching enzyme (EC 3.2.1.-)	glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen phosphorylase (EC 2.4.1.1)	glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)	glycogen_metabolism	Carbohydrates	Polysaccharides
Periplasmic alpha-amylase (EC 3.2.1.1)	glycogen_metabolism	Carbohydrates	Polysaccharides
Cytoplasmic alpha-amylase (EC 3.2.1.1)	glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen biosynthesis protein GlgD, glucose-1-phosphate adenylyltransferase family	glycogen_metabolism	Carbohydrates	Polysaccharides
Malto-oligosyltrehalose synthase (EC 5.4.99.15)	glycogen_metabolism	Carbohydrates	Polysaccharides
Glycogen branching enzyme, GH-57-type, archaeal (EC 2.4.1.18)	glycogen_metabolism	Carbohydrates	Polysaccharides
glycogen debranching enzyme-related protein	glycogen_metabolism	Carbohydrates	Polysaccharides
Putative glycogen debranching enzyme, archaeal type, TIGR01561	glycogen_metabolism	Carbohydrates	Polysaccharides
Alpha-glucosidase, family 31 of glycosyl hydrolases, COG1501	glycogen_metabolism	Carbohydrates	Polysaccharides
Possible carbon dioxide concentrating mechanism protein CcmK	LF_test		
Low-affinity CO2 hydration protein CphX	LF_test		
NADH dehydrogenase subunit 4, Involved in CO2 fixation	LF_test		
Carbon dioxide concentrating mechanism protein CcmO	LF_test		
Peptidase family M61 with PDZ domain	LF_test		
ORF_ID:slr6100 hypothetical protein	LF_test		
FIG00876906: hypothetical protein	LF_test		
ATPase involved in DNA repair	LF_test		
DNA-binding response regulator, AraC family	LF_test		
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	LF_test		
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	LF_test		
hypothetical protein	LF_test		
Alanine racemase (EC 5.1.1.1)	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
HTH-type transcriptional regulator IlvY	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Valine--pyruvate aminotransferase (EC 2.6.1.66)	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7)	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine racemase, catabolic (EC 5.1.1.1)	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine transaminase (EC 2.6.1.2)	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine racemase, biosynthetic (EC 5.1.1.1)	Alr_Ahuja	Amino Acids and Derivatives	Alanine, serine, and glycine
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
ADP-dependent glucokinase (EC 2.7.1.147)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
ADP-dependent phosphofructokinase (EC 2.7.1.146)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase/bisphosphatase ancestral bifunctional (EC 4.1.2.13) (EC 3.1.3.11)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase, archaeal class I (EC 4.1.2.13)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal (EC 5.3.1.9)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate: ferredoxin oxidoreductase (EC 1.2.7.6)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Predicted functional analog of homoserine kinase (EC 2.7.1.-)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Glucose 1-dehydrogenase (EC 1.1.1.47)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal II (EC 5.3.1.9)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Hexokinase (EC 2.7.1.1)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	glycolysis_HN	Carbohydrates	Central carbohydrate metabolism
Transposase for insertion sequence-like element IS431mec	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein 1A/1B (PBP1)	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin binding protein PBP4	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
tRNA-dependent lipid II--glycine ligase (FmhB)	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemA, factor essential for methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemB, factor involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemC, factor involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemD, factor involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
LytH protein involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrA protein involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrB protein involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtA protein involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtC (MrpF) protein involved in methicillin resistance	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhA protein of FemAB family	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhC protein of FemAB family	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanyl transfer protein DltB	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Poly(glycerophosphate chain) D-alanine transfer protein DltD	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RNA polymerase sigma factor SigB	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance repressor MecI	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase regulatory sensor-transducer BlaR1	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase repressor BlaI	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HTH domain protein SA1665, binds to mecA promoter region	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtB (Mrp) protein involved in methicillin resistance and cell wall biosynthesis	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1, truncated	MRSA	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate transporter	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol uptake operon antiterminator regulatory protein	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol uptake facilitator protein	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol kinase (EC 2.7.1.30)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol dehydrogenase (EC 1.1.1.6)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
GlpG protein (membrane protein of glp regulon)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Putative translation initiation inhibitor, yjgF family	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate regulon repressor, DeoR family	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Alpha-glycerophosphate oxidase (EC 1.1.3.21)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
NADH peroxidase (EC 1.11.1.1)	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Probable glycerol transport protein	glycerol_uptake_and_metabolism	Carbohydrates	Sugar alcohols
Glycogen phosphorylase (EC 2.4.1.1)	Glycogen_and_glycerol_link	Experimental Subsystems	
Glycerol uptake facilitator protein	Glycogen_and_glycerol_link	Experimental Subsystems	
Surface presentation of antigens protein SpaP	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaQ	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion chaperone protein for YopD (SycD)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion chaperone protein for YopT (SycT)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion cytoplasmic LcrG inhibitor (LcrV,secretion and targeting control protein, V antigen)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion cytoplasmic plug protein (LcrG)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion host injection and negative regulator protein (YopD)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion host injection protein (YopB)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion injected virulence protein (EC 3.4.22.-,YopT,cysteine protease,depolymerizes actin filaments of cytoskeleton,causes cytotoxicity)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion injected virulence protein (YopP,YopJ, induces apoptosis, prevents cytokine induction, inhibits NFkb activation)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscS,homologous to flagellar export components)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion low calcium response protein (LcrR)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion negative modulator of injection (YopK,YopQ,controls size of translocator pore)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion outermembrane contact sensing protein( yopN,Yop4b,LcrE)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion outermembrane negative regulator of secretion (TyeA)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion possible injected virulence protein (YopM)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion protein (YscP)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion protein EprH	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion spans bacterial envelope protein (YscO)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion transporter lipoprotein (YscW,VirG)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
cell invasion protein SipB	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
hypothetical protein pYVe8081_p05	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion protein SycN	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion protein YscX	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
required for Yop secretion	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Alanine racemase (EC 5.1.1.1)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Unknown, probably involved in type III secretion	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion system EscC protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion system lipoprotein precursor EprK	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Cell invasion protein SipD (Salmonella invasion protein D)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Invasion protein IagB precursor	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Invasion protein InvA	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Invasion protein invH precursor	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Oxygen-regulated invasion protein OrgA	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Probable ATP synthase SpaL (EC 3.6.3.14) (Invasion protein InvC)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaM	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaN (Invasion protein InvJ)	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaO	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion system protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HpaP protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HrpD6 protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Oxygen-regulated invasion protein OrgB	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein SctL	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion inner membrane protein SctS	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III secretion system protein BsaR	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
putative type III secretion protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HpaA protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HrcQ protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HrpB1 protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HrpB2 protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HrpB4 protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HrpD5 protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
HrpF protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Type III effector	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
MxiG protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
MxiK protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
Surface presentation of antigens protein SpaN	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
MxiN	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
MxiH protein	UCLA_Type_IIII_Ahuja	Clustering-based subsystems	Type III secretion system, extended
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
ADP-dependent glucokinase (EC 2.7.1.147)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
ADP-dependent phosphofructokinase (EC 2.7.1.146)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase/bisphosphatase ancestral bifunctional (EC 4.1.2.13) (EC 3.1.3.11)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase, archaeal class I (EC 4.1.2.13)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal (EC 5.3.1.9)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate: ferredoxin oxidoreductase (EC 1.2.7.6)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Predicted functional analog of homoserine kinase (EC 2.7.1.-)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Glucose 1-dehydrogenase (EC 1.1.1.47)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal II (EC 5.3.1.9)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Hexokinase (EC 2.7.1.1)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	UCLA-glycolysis-HN	Carbohydrates	Central carbohydrate metabolism
COG1272: Predicted membrane protein hemolysin III homolog	COG1272_exp._copy	Experimental Subsystems	
Hypothetical protein DUF194, DegV family	COG1272_exp._copy	Experimental Subsystems	
Lipase/Acylhydrolase with GDSL-like motif	COG1272_exp._copy	Experimental Subsystems	
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Chorismate--pyruvate lyase (EC 4.1.3.40)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis monooxygenase UbiB	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-)	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis enzyme COQ7	CH_UbiG	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Transposase for insertion sequence-like element IS431mec	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin-binding protein 1A/1B (PBP1)	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Penicillin binding protein PBP4	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
tRNA-dependent lipid II--glycine ligase (FmhB)	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemA, factor essential for methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemB, factor involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemC, factor involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FemD, factor involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
LytH protein involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrA protein involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HmrB protein involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtA protein involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtC (MrpF) protein involved in methicillin resistance	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhA protein of FemAB family	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmhC protein of FemAB family	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanyl transfer protein DltB	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Poly(glycerophosphate chain) D-alanine transfer protein DltD	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
RNA polymerase sigma factor SigB	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance repressor MecI	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase regulatory sensor-transducer BlaR1	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Beta-lactamase repressor BlaI	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
HTH domain protein SA1665, binds to mecA promoter region	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
FmtB (Mrp) protein involved in methicillin resistance and cell wall biosynthesis	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
Methicillin resistance regulatory sensor-transducer MecR1, truncated	MRSA_	Virulence, Disease and Defense	Resistance to antibiotics and toxic compounds
N-acetylglucosamine kinase like (hypothetical)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
Ribonuclease BN (EC 3.1.-.-)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
Ribonuclease P protein component (EC 3.1.26.5)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
Ribonuclease Z (EC 3.1.26.11)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
tRNA dimethylallyltransferase (EC 2.5.1.75)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase A (EC 4.2.1.70)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase B (EC 4.2.1.70)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
tRNA-i(6)A37 methylthiotransferase	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	UCLA_piR020582_FL	RNA Metabolism	RNA processing and modification
Acetyltransferase YpeA	N-acetyltransferase	Experimental Subsystems	
GNAT family acetyltransferase YhhY	N-acetyltransferase	Experimental Subsystems	
Acetyltransferase, GNAT family	N-acetyltransferase	Experimental Subsystems	
GCN5-related N-acetyltransferase	N-acetyltransferase	Experimental Subsystems	
N-acetyltransferase	N-acetyltransferase	Experimental Subsystems	
GCN5-like N-acetyltransferase	N-acetyltransferase	Experimental Subsystems	
GCN5-related N-acetyltransferase	UCLA_AcetylTransferase_HN	Experimental Subsystems	
Acetyltransferase, GNAT family	UCLA_AcetylTransferase_HN	Experimental Subsystems	
N-acetyltransferase	UCLA_AcetylTransferase_HN	Experimental Subsystems	
Alkaline phosphatase (EC 3.1.3.1)	Phosphate_and_nucleotide_metabolism	Experimental Subsystems	
Low-affinity phosphate transporter	Phosphate_and_nucleotide_metabolism	Experimental Subsystems	
Phosphate starvation-inducible protein PsiF	Phosphate_and_nucleotide_metabolism	Experimental Subsystems	
DGR reverse transcriptase	diversity_generating_retroelement	Experimental Subsystems	possible targets
DGR target protein	diversity_generating_retroelement	Experimental Subsystems	possible targets
Beta N-acetyl-glucosaminidase (EC 3.2.1.52)	Peptidoglycan_Biosythesis_and_Degradation	Experimental Subsystems	
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126)	Peptidoglycan_Biosythesis_and_Degradation	Experimental Subsystems	
Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-)	Peptidoglycan_Biosythesis_and_Degradation	Experimental Subsystems	
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126)	Recycling_of_Peptidoglycan_Amino_Sugars	Cell Wall and Capsule	
Beta N-acetyl-glucosaminidase (EC 3.2.1.52)	Recycling_of_Peptidoglycan_Amino_Sugars	Cell Wall and Capsule	
Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-)	Recycling_of_Peptidoglycan_Amino_Sugars	Cell Wall and Capsule	
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
Phosphoglucosamine mutase (EC 5.4.2.10)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
Glucosamine 6-phosphate N-acetyltransferase (EC 2.3.1.4)	UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	Cell Wall and Capsule	
PTS system, glucitol/sorbitol-specific IIC component	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
PTS system, glucitol/sorbitol-specific IIA component	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
Glucitol operon activator protein	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
Glucitol operon repressor	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
D-arabinose 5-phosphate isomerase (EC 5.3.1.13)	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
PTS system, sorbose-specific IIA component	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
PTS system, sorbose-specific IIC component	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
PTS system, sorbose-specific IIB component (EC 2.7.1.69)	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
PTS system, sorbose-specific IID component	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
L-sorbose 1-phosphate reductase (EC 1.1.1.-)	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
Putative transcriptional regulator of sorbose uptake and utilization genes	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
Sorbitol operon transcription regulator	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
Glucitol/sorbitol-specific transport protein GutA	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization	Carbohydrates	Monosaccharides
Tricarboxylate transport membrane protein TctA	Unknown_2-component_system_UA	Experimental Subsystems	
Tricarboxylate transport protein TctC	Unknown_2-component_system_UA	Experimental Subsystems	
Two component system histidine kinase (EC 2.7.3.-)	Unknown_2-component_system_UA	Experimental Subsystems	
two component response regulator	Unknown_2-component_system_UA	Experimental Subsystems	
Tricarboxylate transport membrane protein TctA	Tricarboxylate_UA	Membrane Transport	
Tricarboxylate transport protein TctB	Tricarboxylate_UA	Membrane Transport	
Tricarboxylate transport protein TctC	Tricarboxylate_UA	Membrane Transport	
Tricarboxylate transport transcriptional regulator TctD	Tricarboxylate_UA	Membrane Transport	
Tricarboxylate transport sensor protein TctE	Tricarboxylate_UA	Membrane Transport	
Ammonia monooxygenase	Tricarboxylate_UA	Membrane Transport	
Tricarboxylate porin OpdH	Tricarboxylate_UA	Membrane Transport	
NAD-dependent protein deacetylase of SIR2 family	sirtuins	Experimental Subsystems	
NAD-dependent protein deacetylase of SIR2 family	sirtuins-archaea	Experimental Subsystems	
VgrG protein	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Hcp	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
lipase family protein	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpB	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein similar to VCA0109	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Protein ImpG/VasA	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpH/VasB	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpI/VasC	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Type VI secretion lipoprotein/VasD	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpJ/VasE	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Outer membrane protein ImpK/VasF, OmpA/MotB domain	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
ClpB protein	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Sigma-54 dependent transcriptional regulator	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Type VI secretion protein VasI	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpA	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Uncharacterized protein ImpC	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
IcmF-related protein	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
lipoprotein, putative	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Conserved domain protein DUF4150	Isa_T6SS	Membrane Transport	Protein secretion system, Type VI
Flavodoxin	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Flavodoxin 2	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
NAD(P)H oxidoreductase YRKL (EC 1.6.99.-)	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Oxidative decarboxylase HemQ of Fe-coproporphyrin-III propionate side chains, oxygen-dependent (no EC)	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Ferredoxin	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Flavoprotein	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Flavodoxin 1	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Flavoprotein MioC	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C)	Flavodoxin_in_Actinobacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
ADP-ribose pyrophosphatase (EC 3.6.1.13)	TolC	Experimental Subsystems	
HlyD family secretion protein	TolC	Experimental Subsystems	
Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)	TolC	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	TolC	Experimental Subsystems	
Putative cytoplasmic protein	TolC	Experimental Subsystems	
drug resistance transporter, EmrB/QacA family	TolC	Experimental Subsystems	
Multidrug resistance protein ErmA	TolC	Experimental Subsystems	
Type I secretion outer membrane protein, TolC precursor	TolC	Experimental Subsystems	
3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)	TolC	Experimental Subsystems	
Putative esterase, FIGfam005057	TolC	Experimental Subsystems	
Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1	TolC	Experimental Subsystems	
Macrolide-specific efflux protein MacA	TolC	Experimental Subsystems	
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)	TolC	Experimental Subsystems	
ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase	TolC	Experimental Subsystems	
Peptidyl-prolyl cis-trans isomerase	TolC	Experimental Subsystems	
HlyB family protein	TolC	Experimental Subsystems	
Acriflavine resistance protein A (AcrA)	TolC	Experimental Subsystems	
Putative uncharacterized protein ygiA	TolC	Experimental Subsystems	
Putative membrane protein YgiB	TolC	Experimental Subsystems	
Acriflavine resistance protein B (AcrB)	TolC	Experimental Subsystems	
Bicarbonate transport system permease protein	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Bicarbonate transporter, bicarbonate binding protein	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Bicarbonate transporter, bicarbonate binding protein 2	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmO	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carbonic anhydrase (EC 4.2.1.1)	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carboxysome protein CcmL	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carboxysome protein CcmM	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carboxysome protein CcmN	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Chloride channel protein	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
High-affnity carbon uptake protein Hat/HatR	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Low-affinity CO2 hydration protein CphX	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase subunit 4, Involved in CO2 fixation	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase subunit 5, Involved in CO2 fixation	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Possible RuBisCo chaperonin RbcX	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Possible carbon dioxide concentrating mechanism protein CcmK	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Sensory subunit of low CO2-induced protein complex, putative	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
putative sodium-dependent bicarbonate transporter	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
ribulose 1,5-bisphosphate carboxylase/oxygenase activase	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
alpha-carboxysome Rubisco Assembly Factor, acRAF	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
carboxysome shell protein CsoS1	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
carboxysome shell protein CsoS2	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
carboxysome shell protein CsoS3	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Red-type Rubisco activase CbbX, removes Rubisco byproduct XuBP	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
putative carboxysome peptide A	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
putative carboxysome peptide B	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39)	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carbonic anhydrase, gamma class (EC 4.2.1.1)	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator CbbR	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase (EC 4.1.1.39)	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Rubisco activation protein CbbO	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Rubisco activation protein CbbQ	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
bacterioferritin possible associated with carboxysome	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmL	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmM	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmN	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
Microcompartments protein precursor	CO2_uptake,_carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase subunit 4, Involved in CO2 fixation	alpha_carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase subunit 5, Involved in CO2 fixation	alpha_carboxysome	Carbohydrates	CO2 fixation
alpha-carboxysome Rubisco Assembly Factor, acRAF	alpha_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	alpha_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	alpha_carboxysome	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator	alpha_carboxysome	Carbohydrates	CO2 fixation
carboxysome shell protein CsoS1	alpha_carboxysome	Carbohydrates	CO2 fixation
carboxysome shell protein CsoS2	alpha_carboxysome	Carbohydrates	CO2 fixation
carboxysome shell protein CsoS3	alpha_carboxysome	Carbohydrates	CO2 fixation
Red-type Rubisco activase CbbX, removes Rubisco byproduct XuBP	alpha_carboxysome	Carbohydrates	CO2 fixation
putative carboxysome peptide A	alpha_carboxysome	Carbohydrates	CO2 fixation
putative carboxysome peptide B	alpha_carboxysome	Carbohydrates	CO2 fixation
Nitrogen regulatory protein P-II	alpha_carboxysome	Carbohydrates	CO2 fixation
CsoS1D	alpha_carboxysome	Carbohydrates	CO2 fixation
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	alpha_carboxysome	Carbohydrates	CO2 fixation
Adenosylhomocysteinase (EC 3.3.1.1)	alpha_carboxysome	Carbohydrates	CO2 fixation
putative sodium-dependent bicarbonate transporter	alpha_carboxysome	Carbohydrates	CO2 fixation
Xanthosine/inosine triphosphate pyrophosphatase	alpha_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase (EC 4.1.1.39)	alpha_carboxysome	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator CbbR	alpha_carboxysome	Carbohydrates	CO2 fixation
Rubisco activation protein CbbO	alpha_carboxysome	Carbohydrates	CO2 fixation
Rubisco activation protein CbbQ	alpha_carboxysome	Carbohydrates	CO2 fixation
bacterioferritin possible associated with carboxysome	alpha_carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase, subunit 5	alpha_carboxysome	Carbohydrates	CO2 fixation
Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog	alpha_carboxysome	Carbohydrates	CO2 fixation
carboxysome NADH-ubiquinone oxidoreductase chain 5 associated	alpha_carboxysome	Carbohydrates	CO2 fixation
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	alpha_carboxysome	Carbohydrates	CO2 fixation
CsoS1D-associated protein 3	alpha_carboxysome	Carbohydrates	CO2 fixation
Sensory subunit of low CO2-induced protein complex, putative	alpha_carboxysome	Carbohydrates	CO2 fixation
Bicarbonate transport system permease protein	beta_carboxysome	Carbohydrates	CO2 fixation
Bicarbonate transporter, bicarbonate binding protein	beta_carboxysome	Carbohydrates	CO2 fixation
Bicarbonate transporter, bicarbonate binding protein 2	beta_carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmO	beta_carboxysome	Carbohydrates	CO2 fixation
Carbonic anhydrase (EC 4.2.1.1)	beta_carboxysome	Carbohydrates	CO2 fixation
Carboxysome protein CcmL	beta_carboxysome	Carbohydrates	CO2 fixation
Chloride channel protein	beta_carboxysome	Carbohydrates	CO2 fixation
High-affnity carbon uptake protein Hat/HatR	beta_carboxysome	Carbohydrates	CO2 fixation
Low-affinity CO2 hydration protein CphX	beta_carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase subunit 4, Involved in CO2 fixation	beta_carboxysome	Carbohydrates	CO2 fixation
NADH dehydrogenase subunit 5, Involved in CO2 fixation	beta_carboxysome	Carbohydrates	CO2 fixation
Possible RuBisCo chaperonin RbcX	beta_carboxysome	Carbohydrates	CO2 fixation
Possible carbon dioxide concentrating mechanism protein CcmK	beta_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	beta_carboxysome	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	beta_carboxysome	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator	beta_carboxysome	Carbohydrates	CO2 fixation
Sensory subunit of low CO2-induced protein complex, putative	beta_carboxysome	Carbohydrates	CO2 fixation
putative sodium-dependent bicarbonate transporter	beta_carboxysome	Carbohydrates	CO2 fixation
Carboxysome protein CcmM	beta_carboxysome	Carbohydrates	CO2 fixation
Carboxysome protein CcmN	beta_carboxysome	Carbohydrates	CO2 fixation
ribulose 1,5-bisphosphate carboxylase/oxygenase activase	beta_carboxysome	Carbohydrates	CO2 fixation
Carbon dioxide concentrating mechanism protein CcmL	beta_carboxysome	Carbohydrates	CO2 fixation
Microcompartments protein precursor	beta_carboxysome	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator CbbR	beta_carboxysome	Carbohydrates	CO2 fixation
Red-type Rubisco activase CbbX, removes Rubisco byproduct XuBP	beta_carboxysome	Carbohydrates	CO2 fixation
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Malate synthase (EC 2.3.3.9)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Phosphoglycolate phosphatase (EC 3.1.3.18)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Aldehyde dehydrogenase A (EC 1.2.1.22)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Formyl-coenzyme A transferase (EC 2.8.3.16)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glycolaldehyde dehydrogenase (EC 1.2.1.21)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glycolate permease	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glycolate utilization operon transcriptional activator GlcC	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Hypothetical protein GlcG in glycolate utilization operon	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Malate synthase G (EC 2.3.3.9)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Oxalyl-CoA decarboxylase (EC 4.1.1.8)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Hydroxypyruvate reductase (EC 1.1.1.81)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glyoxylate reductase (EC 1.1.1.26)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Phosphoglycolate phosphatase, archaeal type (EC 3.1.3.18)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glyoxylate reductase (EC 1.1.1.79)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Transcriptional regulator, LysR family, in glycolate utilization operon	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Predicted glycolate dehydrogenase regulator	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcD	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Glycolate oxidase (EC 1.1.3.15)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Xylulose-1,5-bisphosphate phosphatase CbbY, converts this Rubisco inhibiting byproduct to xylulose-5P	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
(S)-2-hydroxy-acid oxidase (EC 1.1.3.15)	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Putative phosphoglycolate phosphatase (EC 3.1.3.18 )	Glycolate,_glyoxylate_interconversions	Carbohydrates	Central carbohydrate metabolism
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Protein CP12, regulation of Calvin cycle via association/dissociation of PRK/CP12/GAPDH complex	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Phosphoglycerate kinase (EC 2.7.2.3)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Triosephosphate isomerase (EC 5.3.1.1)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Transketolase (EC 2.2.1.1)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Phosphoribulokinase (EC 2.7.1.19)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
2-carboxy-D-arabinitol-1-phosphatase (EC 3.1.3.63)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
D-glycero-2,3-pentodiulose-1,5-bisphosphate phosphatase (EC 3.1.3.-)	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
ribulose 1,5-bisphosphate carboxylase/oxygenase activase	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Xylulose-1,5-bisphosphate phosphatase CbbY, converts this Rubisco inhibiting byproduct to xylulose-5P	Calvin-Benson-Bassham_cycle_in_plants	Carbohydrates	CO2 fixation
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Fructose-bisphosphate aldolase/bisphosphatase ancestral bifunctional (EC 4.1.2.13) (EC 3.1.3.11)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Phosphoglycerate kinase (EC 2.7.2.3)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Phosphoribulokinase (EC 2.7.1.19)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator CbbR	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Transketolase (EC 2.2.1.1)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Transketolase, C-terminal section (EC 2.2.1.1)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Transketolase, N-terminal section (EC 2.2.1.1)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Triosephosphate isomerase (EC 5.3.1.1)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Red-type Rubisco activase CbbX, removes Rubisco byproduct XuBP	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Xylulose-1,5-bisphosphate phosphatase CbbY, converts this Rubisco inhibiting byproduct to xylulose-5P	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Possible RuBisCo chaperonin RbcX	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Protein CP12, regulation of Calvin cycle via association/dissociation of PRK/CP12/GAPDH complex	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
RuBisCO operon transcriptional regulator	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
ribulose 1,5-bisphosphate carboxylase/oxygenase activase	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribose 1,5-bisphosphate or 5-ribose-1,2-cyclic phosphate dehydrogenase	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Rubisco activation protein CbbO	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Rubisco activation protein CbbQ	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Ribulose bisphosphate carboxylase (EC 4.1.1.39)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
2,3-diketo-5-methylthiopentyl-1-phosphate enolase (EC 5.3.2.5)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
2-carboxy-D-arabinitol-1-phosphatase (EC 3.1.3.63)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
D-glycero-2,3-pentodiulose-1,5-bisphosphate phosphatase (EC 3.1.3.-)	Calvin-Benson_cycle	Carbohydrates	CO2 fixation
Dimeric dUTPase (EC 3.6.1.23)	Metabolite_repair	Miscellaneous	
Nicotinamidase (EC 3.5.1.19)	Metabolite_repair	Miscellaneous	
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Metabolite_repair	Miscellaneous	
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	Metabolite_repair	Miscellaneous	
Cof protein, HD superfamily hydrolase	Metabolite_repair	Miscellaneous	
Phosphoglycolate phosphatase (EC 3.1.3.18)	Metabolite_repair	Miscellaneous	
L-asparaginase (EC 3.5.1.1)	Metabolite_repair	Miscellaneous	
Glutamate 5-kinase (EC 2.7.2.11)	Metabolite_repair	Miscellaneous	
RNA-binding C-terminal domain PUA	Metabolite_repair	Miscellaneous	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Metabolite_repair	Miscellaneous	
NAD-dependent malic enzyme (EC 1.1.1.38)	Metabolite_repair	Miscellaneous	
Malate dehydrogenase (EC 1.1.1.37)	Metabolite_repair	Miscellaneous	
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)	Metabolite_repair	Miscellaneous	
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Metabolite_repair	Miscellaneous	
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Metabolite_repair	Miscellaneous	
Alkylhydroperoxidase protein D	Metabolite_repair	Miscellaneous	
Hydrogen peroxide-inducible genes activator	Metabolite_repair	Miscellaneous	
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Metabolite_repair	Miscellaneous	
Adenylylsulfate kinase (EC 2.7.1.25)	Metabolite_repair	Miscellaneous	
5'-nucleotidase YjjG (EC 3.1.3.5)	Metabolite_repair	Miscellaneous	
Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)	Metabolite_repair	Miscellaneous	
Aspartate ammonia-lyase (EC 4.3.1.1)	Metabolite_repair	Miscellaneous	
L-asparaginase I, cytoplasmic (EC 3.5.1.1)	Metabolite_repair	Miscellaneous	
Heme ABC type transporter HtsABC, permease protein HtsC	Metabolite_repair	Miscellaneous	
Allantoate amidohydrolase (EC 3.5.3.9)	Metabolite_repair	Miscellaneous	
Allantoinase (EC 3.5.2.5)	Metabolite_repair	Miscellaneous	
Sulfate adenylyltransferase (EC 2.7.7.4)	Metabolite_repair	Miscellaneous	
5-nucleotidase SurE (EC 3.1.3.5)	Metabolite_repair	Miscellaneous	
Nucleotidase YfbR, HD superfamily	Metabolite_repair	Miscellaneous	
Inosine/xanthosine triphosphatase (EC 3.6.1.-)	Metabolite_repair	Miscellaneous	
Free methionine-(R)-sulfoxide reductase, contains GAF domain	Metabolite_repair	Miscellaneous	
NADPH-dependent broad range aldehyde dehydrogenase YqhD	Metabolite_repair	Miscellaneous	
Transcriptional regulator YqhC, positively regulates YqhD and DkgA	Metabolite_repair	Miscellaneous	
FIG002003: Protein YdjA	Metabolite_repair	Miscellaneous	
FIG016027: protein of unknown function YeaO	Metabolite_repair	Miscellaneous	
Free methionine-(S)-sulfoxide reductase	Metabolite_repair	Miscellaneous	
L-2-hydroxyglutarate oxidase (EC 1.1.3.15)	Metabolite_repair	Miscellaneous	
Atypical L-asparaginase (EC 3.5.1.1), Rhizobium type	Metabolite_repair	Miscellaneous	
Allantoin racemase (EC 5.1.99.3)	Metabolite_repair	Miscellaneous	
Xylulose-1,5-bisphosphate phosphatase CbbY, converts this Rubisco inhibiting byproduct to xylulose-5P	Metabolite_repair	Miscellaneous	
Red-type Rubisco activase CbbX, removes Rubisco byproduct XuBP	Metabolite_repair	Miscellaneous	
Phosphoglycolate phosphatase, archaeal type (EC 3.1.3.18)	Metabolite_repair	Miscellaneous	
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23)	Metabolite_repair	Miscellaneous	
Membrane-bound metal-dependent hydrolase YdjM, induced during SOS response	Metabolite_repair	Miscellaneous	
Staphylococcus nuclease (SNase) domain	Metabolite_repair	Miscellaneous	
Hypothetical protein SAV2173	Metabolite_repair	Miscellaneous	
Signal peptide peptidase SppA (EC 3.4.21.-)	Metabolite_repair	Miscellaneous	
Hydantoin racemase (EC 5.1.99.-)	Metabolite_repair	Miscellaneous	
thermonuclease family protein, (pXO1-141)	Metabolite_repair	Miscellaneous	
ribulose 1,5-bisphosphate carboxylase/oxygenase activase	Metabolite_repair	Miscellaneous	
L-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2)	Metabolite_repair	Miscellaneous	
PUA-like domain PF14306	Metabolite_repair	Miscellaneous	
2-carboxy-D-arabinitol-1-phosphatase (EC 3.1.3.63)	Metabolite_repair	Miscellaneous	
D-glycero-2,3-pentodiulose-1,5-bisphosphate phosphatase (EC 3.1.3.-)	Metabolite_repair	Miscellaneous	
4-hydroxybutyrate coenzyme A transferase	butyrate_metabolism	Experimental Subsystems	
Acyl-CoA dehydrogenase (EC 1.3.8.7)	butyrate_metabolism	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	butyrate_metabolism	Experimental Subsystems	
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	butyrate_metabolism	Experimental Subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	butyrate_metabolism	Experimental Subsystems	
Phosphate acetyltransferase (EC 2.3.1.8)	butyrate_metabolism	Experimental Subsystems	
Acetate kinase (EC 2.7.2.1)	butyrate_metabolism	Experimental Subsystems	
Acetyl-coenzyme A synthetase (EC 6.2.1.1)	butyrate_metabolism	Experimental Subsystems	
Predicted inner membrane protein CbrB	Tolerance_to_colicin_E2_and_CreBC_signal_transduction_system		
Colicin E2 tolerance protein CbrC	Tolerance_to_colicin_E2_and_CreBC_signal_transduction_system		
Sensory histidine kinase CreC of two-component signal transduction system CreBC	Tolerance_to_colicin_E2_and_CreBC_signal_transduction_system		
Response regulator CreB of two-component signal transduction system CreBC	Tolerance_to_colicin_E2_and_CreBC_signal_transduction_system		
Inner membrane protein CreD	Tolerance_to_colicin_E2_and_CreBC_signal_transduction_system		
Conserved uncharacterized protein CreA	Tolerance_to_colicin_E2_and_CreBC_signal_transduction_system		
Myo-inositol 2-dehydrogenase (EC 1.1.1.18)	Inositol_utilization	Carbohydrates	Sugar alcohols
Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)	Inositol_utilization	Carbohydrates	Sugar alcohols
Inosose dehydratase (EC 4.2.1.44)	Inositol_utilization	Carbohydrates	Sugar alcohols
Epi-inositol hydrolase (EC 3.7.1.-)	Inositol_utilization	Carbohydrates	Sugar alcohols
5-deoxy-glucuronate isomerase (EC 5.3.1.-)	Inositol_utilization	Carbohydrates	Sugar alcohols
5-keto-2-deoxygluconokinase (EC 2.7.1.92)	Inositol_utilization	Carbohydrates	Sugar alcohols
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)	Inositol_utilization	Carbohydrates	Sugar alcohols
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)	Inositol_utilization	Carbohydrates	Sugar alcohols
Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1)	Inositol_utilization	Carbohydrates	Sugar alcohols
Inosose isomerase (EC 5.3.99.-)	Inositol_utilization	Carbohydrates	Sugar alcohols
Predicted transcriptional regulator of the myo-inositol catabolic operon	Inositol_utilization	Carbohydrates	Sugar alcohols
Sodium/myo-inositol cotransporter	Inositol_utilization	Carbohydrates	Sugar alcohols
Inositol transport system permease protein	Inositol_utilization	Carbohydrates	Sugar alcohols
Inositol transport system sugar-binding protein	Inositol_utilization	Carbohydrates	Sugar alcohols
Inositol transport system ATP-binding protein	Inositol_utilization	Carbohydrates	Sugar alcohols
Inositol-1-monophosphatase (EC 3.1.3.25)	Inositol_utilization	Carbohydrates	Sugar alcohols
Transcriptional repressor of the myo-inositol catabolic operon DeoR family	Inositol_utilization	Carbohydrates	Sugar alcohols
Minor myo-inositol transporter IolF	Inositol_utilization	Carbohydrates	Sugar alcohols
Major myo-inositol transporter IolT	Inositol_utilization	Carbohydrates	Sugar alcohols
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase [form 2] (EC 4.1.2.29)	Inositol_utilization	Carbohydrates	Sugar alcohols
uncharacterized domain	Inositol_utilization	Carbohydrates	Sugar alcohols
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Inositol_utilization	Carbohydrates	Sugar alcohols
Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18)	Inositol_utilization	Carbohydrates	Sugar alcohols
Fe-containing alcohol dehydrogenase	Inositol_utilization	Carbohydrates	Sugar alcohols
Inositol-related sugar-phosphate epimerase	Inositol_utilization	Carbohydrates	Sugar alcohols
Regulator of myo-inositol utilization IolR, ROK family	Inositol_utilization	Carbohydrates	Sugar alcohols
Predicted inosose dehydrogenase	Inositol_utilization	Carbohydrates	Sugar alcohols
Predicted keto-inosose hydrolase	Inositol_utilization	Carbohydrates	Sugar alcohols
Novel inositol-related kinase, PfkB family (EC 2.7.1.12)	Inositol_utilization	Carbohydrates	Sugar alcohols
Malonate-semialdehyde dehydrogenase (EC 1.2.1.18)	Inositol_utilization	Carbohydrates	Sugar alcohols
GTP cyclohydrolase II (EC 3.5.4.25)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin kinase (EC 2.7.1.26)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
C-terminal domain of CinA type S	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Small primase-like proteins (Toprim domain)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA pseudouridine synthase B (EC 4.2.1.70)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FIG000859: hypothetical protein YebC	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Substrate-specific component RibU of riboflavin ECF transporter	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
N-terminal domain of CinA protein, COG1058	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Pseudouridine-5' phosphatase (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin transporter PnuX	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Uncharacterized protein COG3236	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FAD pyrophosphatase (EC 3.6.1.18)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
2,5-diamino-6-ribitylamino-pyrimidinone 5-phosphate deaminase, fungal (EC 3.5.4.-)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FAD pyrophosphatase (EC 3.6.1.18), putative paralog	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
CTP-dependent archaeal riboflavin kinase (EC 2.7.1.161)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
DNA-binding HTH domain in riboflavin kinase	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase, type 3 archaeal (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Adenosine deaminase (EC 3.5.4.4), alternative form	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase archaeal (EC 2.5.1.9)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Shikimate DH-like protein associated with RibB	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Lumazine protein, riboflavin synthase homolog	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
2,5-diamino-6-ribosylamino-pyrimidinone 5-phosphate reductase, fungal (EC 1.1.1.302)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FO biosynthesis ArfB	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Pseudouridylate synthase 8 (EC 5.4.99.28) responsible for modification of cytoplasmic tRNAs at position 32	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN hydrolase, high substrate specificity (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Putative FMN hydrolase (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_metabolism_Extended	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
GTP cyclohydrolase II (EC 3.5.4.25)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin kinase (EC 2.7.1.26)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase (EC 2.7.7.2)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
C-terminal domain of CinA type S	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Small primase-like proteins (Toprim domain)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA pseudouridine synthase B (EC 4.2.1.70)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FIG000859: hypothetical protein YebC	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Enolase (EC 4.2.1.11)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Substrate-specific component RibU of riboflavin ECF transporter	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
N-terminal domain of CinA protein, COG1058	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Pseudouridine-5' phosphatase (EC 3.1.3.-)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin transporter PnuX	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Putative FMN hydrolase (EC 3.1.3.-)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Uncharacterized protein COG3236	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Adenosine deaminase (EC 3.5.4.4), alternative form	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FAD pyrophosphatase (EC 3.6.1.18)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
2,5-diamino-6-ribitylamino-pyrimidinone 5-phosphate deaminase, fungal (EC 3.5.4.-)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase alpha chain (EC 2.5.1.9)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FAD pyrophosphatase (EC 3.6.1.18), putative paralog	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
CTP-dependent archaeal riboflavin kinase (EC 2.7.1.161)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
DNA-binding HTH domain in riboflavin kinase	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase, type 3 archaeal (EC 2.7.7.2)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase archaeal (EC 2.5.1.9)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Hexokinase (EC 2.7.1.1)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Shikimate DH-like protein associated with RibB	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
GTP cyclohydrolase II homolog	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Lumazine protein, riboflavin synthase homolog	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
2,5-diamino-6-ribosylamino-pyrimidinone 5-phosphate reductase, fungal (EC 1.1.1.302)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FO biosynthesis ArfB	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Pseudouridylate synthase 8 (EC 5.4.99.28) responsible for modification of cytoplasmic tRNAs at position 32	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN hydrolase, high substrate specificity (EC 3.1.3.-)	Test_-_Riboflavin	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA (guanine9-N1-)-methyltransferase (EC 2.1.1.-)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (guanine10-N2-)-methyltransferase (EC 2.1.1.-)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Subunit of an adoMet-dependent tRNA methyltransferase (MTase) complex (Trm11p-Trm112p), required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA acetyltransferase TAN1 (EC 2.3.-.-)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Predicted P-loop ATPase fused to an acetyltransferase COG1444	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA-dihydrouridine synthase 1 (EC 1.-.-.-) modifies uridine residues at position 16 and 17 of cytoplasmic tRNAs	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA-dihydrouridine synthase 2 (EC 1.-.-.-) modifies uridine residues at position 20 of cytoplasmic tRNAs	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA-dihydrouridine synthase 4 (EC 1.-.-.-) modifies uridine residues at position 20A and 20B of cytoplasmic tRNAs	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA N2,N2-dimethyl(Guanine26-N2)-methyltransferase (EC 2.1.1.32)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase 1 (EC 5.4.99.-) introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Pseudouridylate synthase 6 (EC 5.4.99.-) responsible for modification of cytoplasmic and mitochondrial tRNAs at position 31	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (cytosine32/34-2'-O-)-methyltransferase (EC 2.1.1.-)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Pseudouridylate synthase 8 (EC 5.4.99.28) responsible for modification of cytoplasmic tRNAs at position 32	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA specific adenosine-34 deaminase subunit Tad2p	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA specific adenosine-34 deaminase subunit Tad3p	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (cm5uracil34-C5-)-methyltranferase (EC 2.1.1.-)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Cysteine desulfurase (EC 2.8.1.7)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
histone acetyltransferase, ELP3 family	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
n-type ATP pyrophosphatase superfamily / TilS and TtcA-like	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Urm1p Ubiquitin like protein involve in thiolation of mcm5Us4 in tRNA	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Ncs2p involved in thiolation of mcm5Us4 in tRNA	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA dimethylallyltransferase (EC 2.5.1.75)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA specific adenosine-37 deaminase (EC 3.5.4.-) Tad1p	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
Sua5 YciO YrdC YwlC family protein	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA pseudouridine synthase A (EC 4.2.1.70)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA Um(44) 2'-O-methyltransferase (Trm44)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA-dihydrouridine synthase 3 (EC 1.-.-.-) modifies uridine residues at position 47 of cytoplasmic tRNAs	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (cytosine-5-)-methyltransferase NCL1 (EC 2.1.1.29) (tRNA methyltransferase 4) (Multisite-specific tRNA:m5C-methyltransferase)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) (tRNA(m7G46)-methyltransferase)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (guanine46-N7-)-methyltransferase accessory protein	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 55 synthase (EC 4.2.1.70)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (adenine58-N1-)-methylase subunit Gcd10p	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA (adenine58-N1-)-methylase subunit Gcd14p (EC 2.1.1.36)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
tRNA A64-2'-O-ribosylphosphate transferase (EC 2.4.2.-) (Initiator tRNA phosphoribosyl-transferase)	tRNA_modification_yeast_cytoplasmic	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase II (EC 3.5.4.25)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin kinase (EC 2.7.1.26)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
C-terminal domain of CinA type S	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Small primase-like proteins (Toprim domain)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FIG000859: hypothetical protein YebC	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Substrate-specific component RibU of riboflavin ECF transporter	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
N-terminal domain of CinA protein, COG1058	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Pseudouridine-5' phosphatase (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin transporter PnuX	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Putative FMN hydrolase (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Uncharacterized protein COG3236	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Adenosine deaminase (EC 3.5.4.4), alternative form	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FAD pyrophosphatase (EC 3.6.1.18)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
2,5-diamino-6-ribitylamino-pyrimidinone 5-phosphate deaminase, fungal (EC 3.5.4.-)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
tRNA pseudouridine synthase B (EC 4.2.1.70)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FAD pyrophosphatase (EC 3.6.1.18), putative paralog	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
CTP-dependent archaeal riboflavin kinase (EC 2.7.1.161)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
DNA-binding HTH domain in riboflavin kinase	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase, type 3 archaeal (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase archaeal (EC 2.5.1.9)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Uncharacterized protein COG1849 (DUF357)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
GTP cyclohydrolase II homolog	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
2,5-diamino-6-ribosylamino-pyrimidinone 5-phosphate reductase, fungal (EC 1.1.1.302)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FO biosynthesis ArfB	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Lumazine protein, riboflavin synthase homolog	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Pseudouridylate synthase 8 (EC 5.4.99.28) responsible for modification of cytoplasmic tRNAs at position 32	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
HAD-superfamily subfamily IA domain, fused with riboflavin kinase	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Helix-turn-helix domain	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
FMN hydrolase, high substrate specificity (EC 3.1.3.-)	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Shikimate DH-like protein associated with RibB	Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Aspartate 1-decarboxylase (EC 4.1.1.11)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate--beta-alanine ligase (EC 6.3.2.1)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase (EC 2.7.1.24)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Ketol-acid reductoisomerase (EC 1.1.1.86)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
2-dehydropantoate 2-reductase (EC 1.1.1.169)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase (EC 2.7.1.33)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Uncharacterised protein family UPF0157 (COG2320)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Substrate-specific component PanT of predicted pantothenate ECF transporter	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase, type II eukaryotic (EC 2.7.7.3)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Acetyl-CoA sensor PanM, required for maturation of L-aspartate decarboxylase	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate kinase, archaeal (EC 2.7.1.-)	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenate synthetase, archaeal	Coenzyme_A_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Biotin synthesis protein BioH	Test_-_Biotin	Experimental Subsystems	
Biotin synthesis protein BioC	Test_-_Biotin	Experimental Subsystems	
Pimeloyl-CoA synthase (EC 6.2.1.14)	Test_-_Biotin	Experimental Subsystems	
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Test_-_Biotin	Experimental Subsystems	
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Test_-_Biotin	Experimental Subsystems	
Dethiobiotin synthetase (EC 6.3.3.3)	Test_-_Biotin	Experimental Subsystems	
Biotin synthase (EC 2.8.1.6)	Test_-_Biotin	Experimental Subsystems	
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Test_-_Biotin	Experimental Subsystems	
Enolase (EC 4.2.1.11)	Test_-_Biotin	Experimental Subsystems	
Substrate-specific component BioY of biotin ECF transporter	Test_-_Biotin	Experimental Subsystems	
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Test_-_Biotin	Experimental Subsystems	
Biotin operon repressor	Test_-_Biotin	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Test_-_Biotin	Experimental Subsystems	
Transmembrane component BioN of energizing module of biotin ECF transporter	Test_-_Biotin	Experimental Subsystems	
ATPase component BioM of energizing module of biotin ECF transporter	Test_-_Biotin	Experimental Subsystems	
Biotin synthesis protein bioZ	Test_-_Biotin	Experimental Subsystems	
predicted biotin regulatory protein BioR (GntR family)	Test_-_Biotin	Experimental Subsystems	
Biotin synthesis protein BioG	Test_-_Biotin	Experimental Subsystems	
Predicted biotin repressor from TetR family	Test_-_Biotin	Experimental Subsystems	
Biotin synthesis protein bioK	Test_-_Biotin	Experimental Subsystems	
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	CBSS-354.1.peg.1322		
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	ygdL		
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	ygdL		
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	ygdL		
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	ygdL		
Vitamin B12 ABC transporter, B12-binding component BtuF	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii] COG2102: Predicted ATPases of PP-loop superfamily IPR002761: Domain of unknown function DUF71: B12 cluster	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Queuosine Biosynthesis QueC ATPase	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duf71: Diphthamide synthesis Dph6	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, ATPase component BtuD	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Choline kinase (EC 2.7.1.32)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
AMP nucleosidase (EC 3.2.2.4)	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	B12_duf71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
NADP-dependent malic enzyme (EC 1.1.1.40)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Malate dehydrogenase (EC 1.1.1.37)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Pyruvate carboxylase (EC 6.4.1.1)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Isocitrate lyase (EC 4.1.3.1)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Citrate lyase beta chain (EC 4.1.3.6)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Citrate lyase alpha chain (EC 4.1.3.6)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Similar to citrate lyase beta chain, 10	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Immune-responsive protein 1	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)	Citrate_Metabolism_KE4	Carbohydrates	Organic acids
Membrane protein Rv3611, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Hypothetical protein Rv3612c, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Hypothetical protein Rv3613c, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Protein EspD, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Secreted protein EspC, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Secreted protein EspA, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Regulator protein EspR, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Secreted protein EspE, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Secreted protein EspF, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Protein EspG1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Protein EspH, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
AAA+ family protein ATPase EccA1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Membrane protein EccB1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein EccCa1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Protein PE35, involved in regulation of esxAB expression in Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Gating protein PPE68, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
10 kDa culture filtrate antigen CFP-10 (EsxB)	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
6 kDa early secretory antigenic target ESAT-6 (EsxA)	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Integral membrane protein EccD1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Protein EspJ, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Protein EspL, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Secreted protein EspB, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Membrane protein EccE1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
Serine protease mycosin MycP1, component of Type VII secretion system ESX-1	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein, putative EssC component of Type VII secretion system	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-1)	Membrane Transport	Protein secretion system, Type VII
NAD-dependent protein deacetylase of SIR2 family	Cobalamin_(Wirth)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	Cobalamin_(Wirth)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Cobalamin_(Wirth)	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Membrane protein EccB4, component of Type VII secretion system ESX-4	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-4)	Membrane Transport	Protein secretion system, Type VII
Serine protease mycosin MycP4, component of Type VII secretion system ESX-4	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-4)	Membrane Transport	Protein secretion system, Type VII
Integral membrane protein EccD4, component of Type VII secretion system ESX-4	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-4)	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein EccC4, component of Type VII secretion system ESX-4	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-4)	Membrane Transport	Protein secretion system, Type VII
Membrane protein Rv3446c, component of Type VII secretion system ESX-4	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-4)	Membrane Transport	Protein secretion system, Type VII
ESAT-6-like protein EsxU	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-4)	Membrane Transport	Protein secretion system, Type VII
Acetyl-CoA sensor PanM, required for maturation of L-aspartate decarboxylase	Coenzyme_A	Experimental Subsystems	
UPF0301 protein YqgE	MiaB-association	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	MiaB-association	Experimental Subsystems	
Phosphate starvation-inducible protein PhoH, predicted ATPase	MiaB-association	Experimental Subsystems	
tRNA-i(6)A37 methylthiotransferase	MiaB-association	Experimental Subsystems	
Putative Holliday junction resolvase YqgF	MiaB-association	Experimental Subsystems	
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	MiaB-association	Experimental Subsystems	
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	MiaB-association	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	MiaB-association	Experimental Subsystems	
Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase	MiaB-association	Experimental Subsystems	
tRNA-t(6)A37 methylthiotransferase	MiaB-association	Experimental Subsystems	
SAM-dependent methyltransferase YafE (UbiE paralog)	MiaB-association	Experimental Subsystems	
thio:disulfide interchange protein, putative	MiaB-association	Experimental Subsystems	
tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase (putative)	MiaB-association	Experimental Subsystems	
Vitamin B12 ABC transporter, ATPase component BtuD	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Queuosine Biosynthesis QueC ATPase	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
AMP nucleosidase (EC 3.2.2.4)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
conserved hypothetical protein [Pyrococcus horikoshii] COG2102: Predicted ATPases of PP-loop superfamily IPR002761: Domain of unknown function DUF71: B12 cluster	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Choline kinase (EC 2.7.1.32)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duf71: Diphthamide synthesis Dph6	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
FIG01199686: hypothetical protein	B12-DUF71	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
diptheria toxin resistance protein required for diphthamide biosynthesis (Saccharomyces)-like 1	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Diphthamide biosynthesis protein 2 (Diphtheria toxin resistance protein 2)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Diphthamide biosynthesis protein 3 (Kluyveromyces lactis toxin-insensitive protein 11)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Diphthamide biosynthesis protein 4 (J protein type 3)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Diphthine synthase (EC 2.1.1.98)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Duf71: Diphthamide synthesis Dph6	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Translation elongation factor 2	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Porphobilinogen deaminase (EC 2.5.1.61)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
S-adenosylhomocysteine deaminase (EC 3.5.4.28)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Endoribonuclease L-PSP	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Asparagine synthetase (EC 6.3.5.4)	Diphthamide_Biosynthesis	Protein Metabolism	Protein processing and modification
Glutamyl-tRNA synthetase (EC 6.1.1.17)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamyl-tRNA reductase (EC 1.2.1.70)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen synthase (EC 4.2.1.24)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen deaminase (EC 2.5.1.61)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase (EC 4.2.1.75)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Precorrin-2 oxidase (EC 1.3.1.76)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Oxidative decarboxylase HemQ of Fe-coproporphyrin-III propionate side chains, oxygen-dependent (no EC)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM heme biosynthesis protein AhbD, Fe-coproporphyrin III decarboxylase	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5-aminolevulinate synthase (EC 2.3.1.37)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Siroheme decarboxylase AhbA, alternate heme biosynthesis pathway	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Siroheme decarboxylase AhbB, alternate heme biosynthesis pathway	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM heme biosynthesis protein AhbC, 12,18-didecarboxysirohaem deacetylase	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75)	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
putative monooxygenase domain	Heme_Biosynthesis:_protoporphyrin-_and_coproporphyrin-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
N-terminal domain of CinA protein, COG1058	Temporal	Experimental Subsystems	
C-terminal domain of CinA type S	Temporal	Experimental Subsystems	
Nicotinamide-nucleotide amidase (EC 3.5.1.42)	Temporal	Experimental Subsystems	
C-terminal domain of CinA type E	Temporal	Experimental Subsystems	
Beta-carotene hydroxylase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Beta-carotene ketolase (EC 1.14.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Carotenoid cis-trans isomerase (EC 5.2.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Neurosporene desaturase (EC 1.-.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene desaturase (EC 1.14.99.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene synthase (EC 2.5.1.32)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Pro-zeta-carotene desaturase, prolycopene producing (EC 1.-.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Squalene--hopene cyclase (EC 5.4.99.17)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Zeaxanthin glucosyl transferase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxyneurosporene methyltransferase (EC 2.1.1.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxyneurosporene synthase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene beta cyclase (EC 1.14.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene dehydrogenase and related proteins	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene epsilon cyclase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
"phi-Carotenoid synthase" (EC 1.3.-.- and EC 2.1.1-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
CrtT-methyltransferase-like protein	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
CrtV-methyltransferase-like protein	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Dehydrosqualene synthase (EC 2.5.1.96)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
4,4'-diapolycopene oxidase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Phytoene dehydrogenase (EC 1.14.99.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene cyclase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Lycopene elongase (EC 2.5.1.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
C50 carotenoid epsilon cyclase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Methoxyneurosporene dehydrogenase (EC 1.14.99.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Regulator of carotenoid biosynthesis	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Hydroxyneurosporene dehydrogenase (EC 1.-.-.-)	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
gamma-carotene desaturase, putative	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
gamma-carotene hydroxylase	Carotenoid_biosynthesis	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids
Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
Substrate-specific component RibU of riboflavin ECF transporter	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
NAD-dependent protein deacetylase of SIR2 family	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
PhnP protein	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
Nicotinamide mononucleotide adenylyltransferase	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH (EC 2.7.8.37)	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI (EC 2.7.8.37)	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase (EC 4.7.1.1)	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.55)	PhnP_cyclic_phosphodiesterase	Experimental Subsystems	
Putative cytochrome P450 IgrA	Cholesterol_catabolic_operon_in_Mycobacteria	Fatty Acids, Lipids, and Isoprenoids	
Acyl-CoA dehydrogenase IgrB	Cholesterol_catabolic_operon_in_Mycobacteria	Fatty Acids, Lipids, and Isoprenoids	
Acyl-CoA dehydrogenase IgrC	Cholesterol_catabolic_operon_in_Mycobacteria	Fatty Acids, Lipids, and Isoprenoids	
Conserved protein IgrD	Cholesterol_catabolic_operon_in_Mycobacteria	Fatty Acids, Lipids, and Isoprenoids	
Enoyl coenzyme A hydratase IgrE	Cholesterol_catabolic_operon_in_Mycobacteria	Fatty Acids, Lipids, and Isoprenoids	
Lipid carrier protein IgrF	Cholesterol_catabolic_operon_in_Mycobacteria	Fatty Acids, Lipids, and Isoprenoids	
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
HTH-type transcriptional regulator Mce2R, Rv0586	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
Conserved hypothetical integral membrane protein YrbE A Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
Conserved hypothetical integral membrane protein YrbE B Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
MCE family protein of Mce A Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
MCE family protein of Mce B Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
MCE family protein of Mce C Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
MCE family protein of Mce D Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
MCE family protein of Mce E Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
MCE family protein of Mce F Subgroup	Mycobacterial_virulence_operon_MCE_involved_in_cell_invasion	Virulence	
Isochorismate synthase (EC 5.4.4.2) [mycobactin] siderophore	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Acetyl hydrolase MbtJ	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Bifunctional salicyl-AMP ligase/salicyl-S-MbtB synthetase MbtA	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Phenyloxazoline synthase MbtB (EC 6.3.2.-) [mycobactin] siderophore	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Polyketide synthetase MbtC	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Polyketide synthetase MbtD	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Peptide synthetase MbtE	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Peptide synthetase MbtF	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
L-lysine 6-monooxygenase MbtG (EC 1.14.13.59) [mycobactin] siderophore	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Protein MbtH	Mycobactins_siderophores	Iron acquisition and metabolism	Siderophores
Peptide chain release factor 1	tf-thesis	Experimental Subsystems	
Peptide chain release factor 2	tf-thesis	Experimental Subsystems	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	tf-thesis	Experimental Subsystems	
NADH dehydrogenase (EC 1.6.99.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)	NADH-quinone_reductases_HGM	Experimental Subsystems	
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)	NADH-quinone_reductases_HGM	Experimental Subsystems	
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)	NADH-quinone_reductases_HGM	Experimental Subsystems	
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)	NADH-quinone_reductases_HGM	Experimental Subsystems	
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)	NADH-quinone_reductases_HGM	Experimental Subsystems	
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	NADH-quinone_reductases_HGM	Experimental Subsystems	
FMN-dependent NADH-azoreductase	Azodye-degrading_enzymes	Secondary Metabolism	Biodegradation 
Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup	Azodye-degrading_enzymes	Secondary Metabolism	Biodegradation 
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	nonosh	Experimental Subsystems	
Peptide chain release factor 1	nonosh	Experimental Subsystems	
Peptide chain release factor 2	nonosh	Experimental Subsystems	
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	nonosh	Experimental Subsystems	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	nonosh	Experimental Subsystems	
(3R)-hydroxyacyl-ACP dehydratase subunit HadA	Mycobacterial_HadABC_proteins_((3R)-hydroxyacyl-ACP_dehydrates_of_FASII)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
(3R)-hydroxyacyl-ACP dehydratase subunit HadB	Mycobacterial_HadABC_proteins_((3R)-hydroxyacyl-ACP_dehydrates_of_FASII)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
(3R)-hydroxyacyl-ACP dehydratase subunit HadC	Mycobacterial_HadABC_proteins_((3R)-hydroxyacyl-ACP_dehydrates_of_FASII)	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Phenolpthiocerol synthesis type-I polyketide synthase PpsC	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Phenolpthiocerol synthesis type-I polyketide synthase PpsD	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Phenolpthiocerol synthesis type-I polyketide synthase PpsE	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, integral membrane protein DrrB-like	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, integral membrane protein DrrC-like	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Phthiocerol/phthiodiolone dimycocerosyl transferase PapA5 (EC 2.3.1.-)	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Multifunctional mycocerosic acid synthase membrane-associated mas	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD28	Mycobacterial_cell_wall_virulence_lipid_phthiocerol_dimycocerosate_(PDIM)	Cell Wall and Capsule	Cell wall of Mycobacteria
FMN-dependent NADH-azoreductase (EC 1.7.1.6)	Azodye_degradation_	Experimental Subsystems	
FMN-dependent NADH-azoreductase (EC 1.7.-.-)	Azodye_degradation_	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_test_GB	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_test_GB	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_test_GB	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	Folate_test_GB	Experimental Subsystems	
Dihydrofolate synthase (EC 6.3.2.12)	Folate_test_GB	Experimental Subsystems	
Folylpolyglutamate synthase (EC 6.3.2.17)	Folate_test_GB	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	Folate_test_GB	Experimental Subsystems	
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Folate_test_GB	Experimental Subsystems	
Dihydroneopterin triphosphate pyrophosphohydolase	Folate_test_GB	Experimental Subsystems	
FMN-dependent NADH-azoreductase (EC 1.7.1.6)	Azo_Dyes_Degradation	Secondary Metabolism	Biodegradation 
FMN-dependent NADH-azoreductase	Azo_Dyes_Degradation	Secondary Metabolism	Biodegradation 
Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup	Azo_Dyes_Degradation	Secondary Metabolism	Biodegradation 
Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers	Azo_Dyes_Degradation	Secondary Metabolism	Biodegradation 
Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup	Azo_Dyes_Degradation	Secondary Metabolism	Biodegradation 
Predicted iron-dependent peroxidase, Dyp-type family	Azo_Dyes_Degradation	Secondary Metabolism	Biodegradation 
Putative Dyp-type peroxidase, associated with bacterial analog of Cox17 protein	Azo_Dyes_Degradation	Secondary Metabolism	Biodegradation 
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N19	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N19	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N19	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N19	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N19	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N19	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N19	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N19	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N19	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N19	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N19	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N19	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N19	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N12	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N12	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N12	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N12	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N12	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N12	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N12	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N12	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N12	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N12	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N12	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N11	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N11	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N11	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N11	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N11	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N11	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N11	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N11	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N11	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N11	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	UniLU_2015_N11	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N11	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N11	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N11	Experimental Subsystems	
carbohydrate kinase, FGGY	UniLU_2015_N11	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N18	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N18	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N18	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N18	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N18	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N18	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N18	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N18	Experimental Subsystems	
Ribokinase (EC 2.7.1.15)	UniLU_2015_N18	Experimental Subsystems	
Uncharacterized sugar kinase YeiI	UniLU_2015_N18	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N18	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N18	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N18	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N18	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N18	Experimental Subsystems	
L-fucose mutarotase (EC 5.1.3.n2)	UniLU_2015_N18	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N18	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N16	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N16	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N16	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N16	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N16	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N16	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N16	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N16	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N16	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N16	Experimental Subsystems	
putative fuculokinase( EC:2.7.1.5 )	UniLU_2015_N16	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N16	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N16	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N16	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N04	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N04	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N04	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N04	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N04	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N04	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N04	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N04	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N04	Experimental Subsystems	
N-acylglucosamine 2-epimerase (EC 5.1.3.8)	UniLU_2015_N04	Experimental Subsystems	
ROK family sugar kinase or transcriptional regulator	UniLU_2015_N04	Experimental Subsystems	
L-fucose mutarotase, type 2 (EC 5.1.3.n2)	UniLU_2015_N04	Experimental Subsystems	
ROK family protein	UniLU_2015_N04	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N04	Experimental Subsystems	
Putative ROK-family transcriptional regulator	UniLU_2015_N04	Experimental Subsystems	
L-fucose mutarotase, type 2	UniLU_2015_N04	Experimental Subsystems	
Possible alternative L-fucose mutarotase	UniLU_2015_N04	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N04	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N20	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N20	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N20	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N20	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N20	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N20	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N20	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N20	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N20	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N20	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N20	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N20	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N20	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIA component / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component	UniLU_2015_N20	Experimental Subsystems	
PTS system, glucose-specific IIC component / PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIA component	UniLU_2015_N20	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N20	Experimental Subsystems	
L-fucose mutarotase (EC 5.1.3.n2)	UniLU_2015_N20	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIC component / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIA component	UniLU_2015_N20	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N20	Experimental Subsystems	
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)	UniLU_2015_N20	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N02	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N02	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N02	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N02	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N02	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N02	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N02	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N02	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N02	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N02	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N02	Experimental Subsystems	
L-fucose mutarotase, type 2	UniLU_2015_N02	Experimental Subsystems	
Possible alternative L-fucose mutarotase	UniLU_2015_N02	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N02	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N02	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N09	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N09	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N09	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N09	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N09	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N09	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N09	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N09	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N09	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N09	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N09	Experimental Subsystems	
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	UniLU_2015_N09	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N09	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N09	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N14	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N14	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N14	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N14	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N14	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N14	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N14	Experimental Subsystems	
Glucokinase (EC 2.7.1.2)	UniLU_2015_N14	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N14	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N14	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N14	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N14	Experimental Subsystems	
probable transcriptional regulator	UniLU_2015_N14	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N14	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N15	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N15	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	UniLU_2015_N15	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N15	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N15	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N15	Experimental Subsystems	
Glucokinase (EC 2.7.1.2)	UniLU_2015_N15	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N15	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N15	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N15	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N15	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N15	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N15	Experimental Subsystems	
sugar kinase	UniLU_2015_N15	Experimental Subsystems	
N-acetylgalactosamine-6-phosphate deacetylase	UniLU_2015_N15	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N15	Experimental Subsystems	
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	UniLU_2015_N15	Experimental Subsystems	
putative acyl-CoA reductase/dehydratase	UniLU_2015_N15	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N15	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N10	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N10	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N10	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N10	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N10	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N10	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N10	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N10	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N10	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N10	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N10	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N10	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N10	Experimental Subsystems	
N-acetylgalactosamine-6-phosphate deacetylase	UniLU_2015_N10	Experimental Subsystems	
L-fuculokinase( EC:2.7.1.51 )	UniLU_2015_N10	Experimental Subsystems	
FIG01232845: hypothetical protein	UniLU_2015_N10	Experimental Subsystems	
class II aldolase/adducin family protein	UniLU_2015_N10	Experimental Subsystems	
Fucose permease	UniLU_2015_N03	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N03	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N03	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N03	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N03	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N03	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N03	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N03	Experimental Subsystems	
Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase	UniLU_2015_N03	Experimental Subsystems	
Sialidase (EC 3.2.1.18)	UniLU_2015_N03	Experimental Subsystems	
Transcriptional regulator of fucose utilization, GntR family	UniLU_2015_N03	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N03	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N03	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N03	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N03	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N03	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N13	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N13	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N13	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N13	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N13	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N13	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N13	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N13	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N13	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N13	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N13	Experimental Subsystems	
Membrane protein EccB2, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
PE family protein Rv3893c, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
PPE family protein Rv3892c, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
ESAT-6-like protein EsxD	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
ESAT-6-like protein EsxC	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
Protein EspG2, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
ATPase of AAA+ superfamily Rv3888c	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
Integral membrane protein EccD2, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
Serine protease mycosin MycP2, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
Membrane protein EccE2, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-2)	Membrane Transport	Protein secretion system, Type VII
AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
PPE family protein Rv0286, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
ESAT-6-like protein EsxG	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
ESAT-6-like protein EsxH, 10 kDa antigen CFP7	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
Protein EspG3, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
Integral membrane protein EccD3, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
Serine protease mycosin MycP3, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
Membrane protein EccE3, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
Protein EccB3, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
PE family protein Rv0285, component of Type VII secretion system ESX-3	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-3)	Membrane Transport	Protein secretion system, Type VII
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N01	Experimental Subsystems	
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	UniLU_2015_N01	Experimental Subsystems	
Predicted N-acetyl-glucosamine kinase 2, ROK family (EC 2.7.1.59)	UniLU_2015_N01	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N01	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N01	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N01	Experimental Subsystems	
Glucokinase (EC 2.7.1.2)	UniLU_2015_N01	Experimental Subsystems	
L-fucose mutarotase (EC 5.1.3.n2)	UniLU_2015_N01	Experimental Subsystems	
ROK family sugar kinase or transcriptional regulator	UniLU_2015_N01	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N01	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N01	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N01	Experimental Subsystems	
Transcriptional regulator ROK family, putative sugar kinase	UniLU_2015_N01	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N01	Experimental Subsystems	
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	UniLU_2015_N01	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25) @ D-Arabinose ketol-isomerase (EC 5.3.1.3)	UniLU_2015_N01	Experimental Subsystems	
class II aldolase/adducin family protein	UniLU_2015_N01	Experimental Subsystems	
FIG00944939: hypothetical protein	UniLU_2015_N01	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	UniLU_2015_N01	Experimental Subsystems	
putative glucokinase	UniLU_2015_N01	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N01	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N01	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N01	Experimental Subsystems	
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	UniLU_2015_N01	Experimental Subsystems	
Acetylglutamate kinase (EC 2.7.2.8)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine aminotransferase (EC 2.6.1.11)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine deacetylase (EC 3.5.1.16)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine pathway regulatory protein ArgR, repressor of arg regulon	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate lyase (EC 4.3.2.1)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate synthase (EC 6.3.4.5)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylglutamate synthase (EC 2.3.1.1)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate N-acetyltransferase (EC 2.3.1.35)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted arginine uptake transporter	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine aminotransferase 1 (EC 2.6.1.11)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted amino-acid acetyltransferase (EC 2.3.1.1) complementing ArgA function in Arginine Biosynthesis pathway	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylornithine carbamoyltransferase (EC 2.1.3.9)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylglutamate synthase, alternative (EC 2.3.1.1)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine aminotransferase 2 (EC 2.6.1.11)	Arginine_Biosynthesis_extended	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
TRAP-type L-galactonate transport system, periplasmic component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type L-galactonate transport system, large permease component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type L-galactonate transport system, small permease component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
L-galactonate dehydrogenase (EC 1.1.1.-); predicted	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
L-gulonate dehydrogenase (EC 1.1.1.-)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Altronate dehydratase (EC 4.2.1.7)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Mannonate dehydratase (EC 4.2.1.8)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
D-mannonate oxidoreductase (EC 1.1.1.57)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Altronate oxidoreductase (EC 1.1.1.58)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type L-gulonate transport system, small permease component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type L-gulonate transport system, large permease component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Gulonate utilization operon transcriptional repressor GulR	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Predicted Alpha-glucuronidase (EC 3.2.1.139), glycoside hydrolase family 31	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type hexuronate transport system, large permease component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type hexuronate transport system, periplasmic component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type hexuronate transport system, small permease component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
TRAP-type L-gulonate transport system, periplasmic component	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Regulator of L-galactonate catabolism LgaR, GntR family; predicted	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Uronate isomerase (EC 5.3.1.12)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Hexuronate utilization transcriptional regulator, GntR family	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Alpha-glucosidase (EC 3.2.1.20)	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Hexuronate transporter	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
D-glucuronate-specific transcriptional regulator, LacI family	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
Regulator of L-galactonate catabolism YjjM, GntR family	L-galactonate_and_L-gulonate_utilization_by_TRAP_transporters	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N05	Experimental Subsystems	
L-fucose mutarotase, type 2	UniLU_2015_N05	Experimental Subsystems	
Possible alternative L-fucose mutarotase	UniLU_2015_N05	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N05	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N05	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N05	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N05	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N05	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N05	Experimental Subsystems	
Hypothetical sugar kinase, ROK family	UniLU_2015_N05	Experimental Subsystems	
Ribokinase (EC 2.7.1.15)	UniLU_2015_N05	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N05	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N05	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N05	Experimental Subsystems	
Glucokinase (EC 2.7.1.2)	UniLU_2015_N05	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N05	Experimental Subsystems	
ROK family sugar kinase or transcriptional regulator	UniLU_2015_N05	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N05	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N08	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N08	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N08	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N08	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N08	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N08	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N08	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N08	Experimental Subsystems	
Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)	UniLU_2015_N08	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N08	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N08	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N08	Experimental Subsystems	
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	UniLU_2015_N08	Experimental Subsystems	
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	UniLU_2015_N08	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N08	Experimental Subsystems	
Kinase similar to eukaryotic-like N-acetylglucosamine kinase	UniLU_2015_N08	Experimental Subsystems	
putative N-acetylneuraminate lyase	UniLU_2015_N08	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N08	Experimental Subsystems	
Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog	DUF2309	Experimental Subsystems	
NADH dehydrogenase, subunit 5	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
Nitrogen regulatory protein P-II	DUF2309	Experimental Subsystems	
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	DUF2309	Experimental Subsystems	
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39)	DUF2309	Experimental Subsystems	
carboxysome shell protein CsoS2	DUF2309	Experimental Subsystems	
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	DUF2309	Experimental Subsystems	
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	DUF2309	Experimental Subsystems	
carboxysome NADH-ubiquinone oxidoreductase chain 5 associated	DUF2309	Experimental Subsystems	
Rubisco activation protein CbbQ	DUF2309	Experimental Subsystems	
Rubisco activation protein CbbO	DUF2309	Experimental Subsystems	
Transcriptional regulator, AsnC family	DUF2309	Experimental Subsystems	
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	DUF2309	Experimental Subsystems	
Lipoate-protein ligase A / domain of unknown function	DUF2309	Experimental Subsystems	
N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	DUF2309	Experimental Subsystems	
Aldehyde dehydrogenase B (EC 1.2.1.22)	DUF2309	Experimental Subsystems	
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1)	DUF2309	Experimental Subsystems	
FIG00852724: hypothetical protein	DUF2309	Experimental Subsystems	
putative sodium-dependent bicarbonate transporter	DUF2309	Experimental Subsystems	
FIG00674603: hypothetical protein	DUF2309	Experimental Subsystems	
NADH dehydrogenase-like complex, subunit J2	DUF2309	Experimental Subsystems	
Pyruvate:ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.1)	DUF2309	Experimental Subsystems	
Pyruvate:ferredoxin oxidoreductase, beta subunit (EC 1.2.7.1)	DUF2309	Experimental Subsystems	
ferredoxin oxidoreductase gamma subunit	DUF2309	Experimental Subsystems	
Membrane protein EccB5, component of Type VII secretion system ESX-5	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Cytochrome P450 143	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Ferredoxin Rv1786	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Secretion system PPE family protein PPE25 Rv1787	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Secretion system PPE family protein Rv1790	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
FIG018298: PE family protein	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
ESAT-6-like protein EsxM	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
ESAT-6-like protein EsxN	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
FIG023076: hypothetical protein in PPE gene cluster	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Integral membrane protein EccD5, component of Type VII secretion system ESX-5	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Serine protease mycosin MycP5, component of Type VII secretion system ESX-5	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Membrane protein EccE5, component of Type VII secretion system ESX-5	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
AAA+ family protein ATPase EccA5, component of Type VII secretion system ESX-5	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
10 kDa culture filtrate antigen CFP-10 (EsxB)	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
6 kDa early secretory antigenic target ESAT-6 (EsxA)	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Secretion system PPE family protein Rv1789	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Secretion system PE family protein Rv1788	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
Small secreted protein of WXG100 family, Type VII secretion target	ESAT-6_proteins_secretion_system_in_Mycobacteria_(locus_ESX-5)	Membrane Transport	Protein secretion system, Type VII
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N06	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N06	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N06	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N06	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N06	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N06	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N06	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N06	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N06	Experimental Subsystems	
Possible alternative L-fucose mutarotase	UniLU_2015_N06	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	UniLU_2015_N06	Experimental Subsystems	
Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon	UniLU_2015_N06	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N06	Experimental Subsystems	
L-fucose mutarotase, type 2	UniLU_2015_N06	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N06	Experimental Subsystems	
Putative ROK-family transcriptional regulator	UniLU_2015_N06	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N06	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N06	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	UniLU_2015_N06	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N07	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N07	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N07	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N07	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N07	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N07	Experimental Subsystems	
L-rhamnose mutarotase	UniLU_2015_N07	Experimental Subsystems	
Putative ROK-family transcriptional regulator	UniLU_2015_N07	Experimental Subsystems	
Glucokinase (EC 2.7.1.2)	UniLU_2015_N07	Experimental Subsystems	
class II aldolase/adducin family protein	UniLU_2015_N07	Experimental Subsystems	
ROK family sugar kinase or transcriptional regulator	UniLU_2015_N07	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N07	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N07	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	UniLU_2015_N07	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N07	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N07	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N07	Experimental Subsystems	
L-fucose mutarotase, type 2	UniLU_2015_N07	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N07	Experimental Subsystems	
Possible alternative L-fucose mutarotase	UniLU_2015_N07	Experimental Subsystems	
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE1	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE2	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE7	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE8	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE9	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE10	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) @ Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE13	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE14	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE16	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE17	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE18	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE20	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE21	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE22	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE23	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE24	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE25	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE26	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE27	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Probable acyl-CoA dehydrogenase FadE28 (EC 1.3.99.-)	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase IgrB	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Probable acyl-CoA dehydrogenase FadE29 (EC 1.3.99.-)	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase IgrC	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE30	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE31	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE32	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE33	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE34	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Probable acyl-CoA dehydrogenase fadE35 (EC 1.3.99.-)	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE36	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Butyryl-CoA dehydrogenase (EC 1.3.8.1) @ Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE12	Mycobacterial_FadE_proteins_Acyl-CoA_dehydrogenase	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	UniLU_2015_N17	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	UniLU_2015_N17	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	UniLU_2015_N17	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	UniLU_2015_N17	Experimental Subsystems	
L-fucose mutarotase	UniLU_2015_N17	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	UniLU_2015_N17	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	UniLU_2015_N17	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	UniLU_2015_N17	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	UniLU_2015_N17	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	UniLU_2015_N17	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	UniLU_2015_N17	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	UniLU_2015_N17	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	UniLU_2015_N17	Experimental Subsystems	
L-fucose mutarotase (EC 5.1.3.n2)	UniLU_2015_N17	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	AdiR	Experimental Subsystems	
Carbamate kinase (EC 2.7.2.2)	AdiR	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	AdiR	Experimental Subsystems	
Arginine deiminase (EC 3.5.3.6)	AdiR	Experimental Subsystems	
RidA/YER057c/UK114 superfamily protein	AdiR	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	AdiR	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	AdiR	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	AdiR	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	AdiR	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	AdiR	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	AdiR	Experimental Subsystems	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	AdiR	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	AdiR	Experimental Subsystems	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	AdiR	Experimental Subsystems	
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	AdiR	Experimental Subsystems	
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	AdiR	Experimental Subsystems	
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	AdiR	Experimental Subsystems	
GCN5-related N-acetyltransferase	AdiR	Experimental Subsystems	
Transcriptional regulator, MarR family	AdiR	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	AdiR	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	AdiR	Experimental Subsystems	
uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5	AdiR	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	AdiR	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	AdiR	Experimental Subsystems	
pyridoxal phosphate-dependent deaminase, putative	AdiR	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	AdiR	Experimental Subsystems	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	AdiR	Experimental Subsystems	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	AdiR	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	AdiR	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	AdiR	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	AdiR	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	AdiR	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	AdiR	Experimental Subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	AdiR	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	AdiR	Experimental Subsystems	
Cyanate hydratase (EC 4.2.1.104)	AdiR	Experimental Subsystems	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	AdiR	Experimental Subsystems	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	AdiR	Experimental Subsystems	
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	AdiR	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 6	AdiR	Experimental Subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	AdiR	Experimental Subsystems	
Ornithine cyclodeaminase (EC 4.3.1.12)	AdiR	Experimental Subsystems	
BH2577 unknown conserved protein in B. subtilis	AdiR	Experimental Subsystems	
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	AdiR	Experimental Subsystems	
Tryptophanase (EC 4.1.99.1)	AdiR	Experimental Subsystems	
Threonine dehydratase, catabolic (EC 4.3.1.19)	AdiR	Experimental Subsystems	
Type III PLP	AdiR	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	AdiR	Experimental Subsystems	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	AdiR	Experimental Subsystems	
Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17)	AdiR	Experimental Subsystems	
Beta-ureidopropionase (EC 3.5.1.6)	AdiR	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	AdiR	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 3	AdiR	Experimental Subsystems	
Probable L-amino-acid oxidase (EC 1.4.3.2)	AdiR	Experimental Subsystems	
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	AdiR	Experimental Subsystems	
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	AdiR	Experimental Subsystems	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) / Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)	AdiR	Experimental Subsystems	
Crotonyl-CoA carboxylase/reductase, ethylmalonyl-CoA producing	AdiR	Experimental Subsystems	
Ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming	AdiR	Experimental Subsystems	
Opine oxidase subunit B	AdiR	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 4	AdiR	Experimental Subsystems	
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	AdiR	Experimental Subsystems	
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	AdiR	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	AdiR	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	AdiR	Experimental Subsystems	
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)	AdiR	Experimental Subsystems	
2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) / Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20)	AdiR	Experimental Subsystems	
FAD oxidoreductase	AdiR	Experimental Subsystems	
L-serine dehydratase 1 (EC 4.3.1.17)	AdiR	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	YcaO	Experimental Subsystems	
FIG00638589: hypothetical protein	YcaO	Experimental Subsystems	
Protein of unknown function DUF181	YcaO	Experimental Subsystems	
S-adenosylmethionine synthetase (EC 2.5.1.6)	AdoMet_Repair		
Homocysteine S-methyltransferase (EC 2.1.1.10)	AdoMet_Repair		
S-methylmethionine permease	AdoMet_Repair		
Arginine/ornithine antiporter ArcD	AdoMet_Repair		
Protein sprT	AdoMet_Repair		
Adenosylhomocysteinase (EC 3.3.1.1)	AdoMet_Repair		
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)	AdoMet_Repair		
AdoMet-AdoHcy transporter	AdoMet_Repair		
(Betaine) homocysteine S-methyltransferase	AdoMet_Repair		
AdoMet-AdoHcy transporter 2	AdoMet_Repair		
Methionine S-methyltransferase (EC 2.1.1.12)	AdoMet_Repair		
RidA/YER057c/UK114 superfamily protein	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Carbamate kinase (EC 2.7.2.2)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Ornithine carbamoyltransferase (EC 2.1.3.3)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Aspartate carbamoyltransferase (EC 2.1.3.2)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
N-acetylglutamate synthase (EC 2.3.1.1)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Acetylglutamate kinase (EC 2.7.2.8)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11) @ N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Acetylornithine deacetylase (EC 3.5.1.16)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Argininosuccinate synthase (EC 6.3.4.5)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Argininosuccinate lyase (EC 4.3.2.1)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Arginine/ornithine antiporter ArcD	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Dihydroorotase (EC 3.5.2.3)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Orotate phosphoribosyltransferase (EC 2.4.2.10)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Carbamate kinase-like protein YqeA	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 1	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Glutamate N-acetyltransferase (EC 2.3.1.35)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Arginase (EC 3.5.3.1)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Ornithine cyclodeaminase (EC 4.3.1.12)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Arginine deiminase (EC 3.5.3.6)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Putrescine carbamoyltransferase (EC 2.1.3.6)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 3	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA fragment or small ORF	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
l-arginine:glycine amidinotransferase	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
N-acetylornithine carbamoyltransferase (EC 2.1.3.9)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 3 tandem domains	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 2 tandem domains	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
Glycine amidinotransferase (EC 2.1.4.1)	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 4 tandem domains	TN_RidA:_all_subgroups,_981_genomes_carbamoyl-P	Metabolite damage and its repair or mitigation	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Queuosine biosynthesis QueD, PTPS-I	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueE Radical SAM	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueC ATPase	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase (EC 1.7.1.13)	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
tRNA-guanine transglycosylase (EC 2.4.2.29)	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Putative preQ0 transporter	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Permease of the drug/metabolite transporter (DMT) superfamily	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase-like	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
glutamyl-Q-tRNA synthetase	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Epoxyqueuosine (oQ) reductase QueG	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
Hypothetical protein DUF2419	Queuosine_salvage_RZ_exploration	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Queuosine biosynthesis QueD, PTPS-I	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueE Radical SAM	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueC ATPase	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase (EC 1.7.1.13)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
tRNA-guanine transglycosylase (EC 2.4.2.29)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Putative preQ0 transporter	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Permease of the drug/metabolite transporter (DMT) superfamily	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) PUA domain	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase-like	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
COG2047: Uncharacterized protein (ATP-grasp superfamily)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
glutamyl-Q-tRNA synthetase	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Epoxyqueuosine (oQ) reductase QueG	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Archaeosine cluster gene X	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 short	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Glutamine amidotransferases class-II (GATase)	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Hypothetical protein DUF2419	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Transketolase (EC 2.2.1.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Thiamin_diphosphate_damage	Experimental Subsystems	
Acetolactate synthase large subunit (EC 2.2.1.6)	Thiamin_diphosphate_damage	Experimental Subsystems	
Superoxide reductase (EC 1.15.1.2)	Thiamin_diphosphate_damage	Experimental Subsystems	
Rubrerythrin	Thiamin_diphosphate_damage	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_diphosphate_damage	Experimental Subsystems	
Thiol peroxidase, Bcp-type (EC 1.11.1.15)	Thiamin_diphosphate_damage	Experimental Subsystems	
Transketolase, N-terminal section (EC 2.2.1.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
Transketolase, C-terminal section (EC 2.2.1.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Thiamin_diphosphate_damage	Experimental Subsystems	
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Thiamin_diphosphate_damage	Experimental Subsystems	
Alkyl hydroperoxide reductase subunit C-like protein	Thiamin_diphosphate_damage	Experimental Subsystems	
Superoxide dismutase [Fe] (EC 1.15.1.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	Thiamin_diphosphate_damage	Experimental Subsystems	
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
Pyruvate decarboxylase (EC 4.1.1.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
AhpE	Thiamin_diphosphate_damage	Experimental Subsystems	
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1)	Thiamin_diphosphate_damage	Experimental Subsystems	
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	Citrate_Metabolism_KE2	Carbohydrates	Organic acids
Citrate lyase alpha chain (EC 4.1.3.6)	Citrate_Metabolism_KE2	Carbohydrates	Organic acids
Citrate lyase beta chain (EC 4.1.3.6)	Citrate_Metabolism_KE2	Carbohydrates	Organic acids
Immune-responsive protein 1	Citrate_Metabolism_KE2	Carbohydrates	Organic acids
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	LOG_family_proteins_in_prokaryotes		
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)	LOG_family_proteins_in_prokaryotes		
LOG family protein	LOG_family_proteins_in_prokaryotes		
Phosphoribohydrolase involved in Mycobacterial cytokinins production, homolog of plant cytokinin-activating enzyme LOG	LOG_family_proteins_in_prokaryotes		
Non functional Dihydropteroate synthase 2	LOG_family_proteins_in_prokaryotes		
Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19)	polyamine_Halophile	Experimental Subsystems	
Deoxyhypusine synthase (EC 2.5.1.46)	polyamine_Halophile	Experimental Subsystems	
Eukaryotic translation initiation factor 5A	polyamine_Halophile	Experimental Subsystems	
Agmatinase (EC 3.5.3.11)	polyamine_Halophile	Experimental Subsystems	
Translation elongation factor 1 alpha subunit	polyamine_Halophile	Experimental Subsystems	
FIG137478: Hypothetical protein YbgI	polyamine_Halophile	Experimental Subsystems	
Spermidine synthase (EC 2.5.1.16)	polyamine_Halophile	Experimental Subsystems	
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B	polyamine_Halophile	Experimental Subsystems	
Deoxyhypusine synthase	polyamine_Halophile	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal kinase (EC 2.7.1.35)	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal reductase (EC 1.1.1.65)	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
DUF1537 linked to pdxA	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal biosynthesis protein homolog PDX1L2, unable to catalyze pyridoxal phosphate synthesis	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis-like protein PDX1L4	Pyridoxine_(vitamin_B6)_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	Lux_AP_YjeE1	Experimental Subsystems	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	Lux_AP_YjeE1	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	Lux_AP_YjeE1	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	Lux_AP_YjeE1	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	NADPHX	Experimental Subsystems	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	NADPHX	Experimental Subsystems	
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	NADPHX	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	NADPHX	Experimental Subsystems	
alpha/beta hydrolase fold	NADPHX	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate synthetase (EC 2.5.1.72)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Sulfur acceptor protein SufE for iron-sulfur cluster assembly	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), eukaryotic PNAT family	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD synthetase (EC 6.3.1.5)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Glutamine amidotransferase chain of NAD synthetase	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NADH kinase (EC 2.7.1.86)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD kinase (EC 2.7.1.23)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Calmodulin-binding domain	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamidase (EC 3.5.1.19), plant/cyanobacterial family	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamidase (EC 3.5.1.19) of PncA family, nonfunctional	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NUDIX hydrolase, NAD diphosphatase (EC 3.6.1.22)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NADH pyrophosphatase (EC 3.6.1.22)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Niacin transporter NiaP	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD and pyridine nucleotides transporter (of mitochondrial carrier family)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Peroxisomal membrane carrier for NAD(+)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Purine nucleosidase (EC 3.2.2.1)	Niacin,_NAD_and_NADP_biosynthesis_in_plants	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Transcriptional regulator, GntR family domain	YggS_5/3/2012		
Aspartate aminotransferase (EC 2.6.1.1)	YggS_5/3/2012		
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	YggS_5/3/2012		
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	YggS_5/3/2012		
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)	YggS_5/3/2012		
Twitching motility protein PilT	YggS_5/3/2012		
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	YggS_5/3/2012		
COG1496: Uncharacterized conserved protein	YggS_5/3/2012		
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	YggS_5/3/2012		
Phosphoserine aminotransferase (EC 2.6.1.52)	YggS_5/3/2012		
Serine hydroxymethyltransferase (EC 2.1.2.1)	YggS_5/3/2012		
Cell division protein FtsZ (EC 3.4.24.-)	YggS_5/3/2012		
Cell division protein FtsA	YggS_5/3/2012		
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	YggS_5/3/2012		
Cell division protein FtsK	YggS_5/3/2012		
Septum formation protein Maf	YggS_5/3/2012		
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	YggS_5/3/2012		
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YggS_5/3/2012		
Leucyl-tRNA synthetase (EC 6.1.1.4)	YggS_5/3/2012		
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	YggS_5/3/2012		
Rod shape-determining protein MreB	YggS_5/3/2012		
Ccm2-related protein	YggS_5/3/2012		
DNA polymerase III epsilon subunit (EC 2.7.7.7)	YggS_5/3/2012		
Lipoprotein signal peptidase (EC 3.4.23.36)	YggS_5/3/2012		
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YggS_5/3/2012		
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YggS_5/3/2012		
Glutamate racemase (EC 5.1.1.3)	YggS_5/3/2012		
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	YggS_5/3/2012		
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	YggS_5/3/2012		
Pyridoxal kinase (EC 2.7.1.35)	YggS_5/3/2012		
Predicted transcriptional regulator of pyridoxine metabolism	YggS_5/3/2012		
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	YggS_5/3/2012		
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	YggS_5/3/2012		
FIG001960: FtsZ-interacting protein related to cell division	YggS_5/3/2012		
Cell division initiation protein DivIVA	YggS_5/3/2012		
RNA binding methyltransferase FtsJ like	YggS_5/3/2012		
FIG001583: hypothetical protein, contains S4-like RNA binding domain	YggS_5/3/2012		
Integral membrane protein CcmA involved in cell shape determination	YggS_5/3/2012		
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	YggS_5/3/2012		
COG1664: Integral membrane protein CcmA involved in cell shape determination	YggS_5/3/2012		
Protein of unknown function, DUF583 superfamily	YggS_5/3/2012		
Protein of unknown function DUF583	YggS_5/3/2012		
Xanthosine/inosine triphosphate pyrophosphatase; HAM1-like protein	YggS_5/3/2012		
UPF0235 protein yggU	YggS_5/3/2012		
CCM1 protein (CCM2 protein)	YggS_5/3/2012		
FIG00482008: hypothetical protein	YggS_5/3/2012		
Protein of unknown function DUF2470	YggS_5/3/2012		
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YjeE	Cell Wall and Capsule	
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases	YjeE	Cell Wall and Capsule	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YjeE	Cell Wall and Capsule	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YjeE	Cell Wall and Capsule	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	YjeE	Cell Wall and Capsule	
CBS domain protein sometimes clustered with YjeE	YjeE	Cell Wall and Capsule	
Molybdenum cofactor biosynthesis protein MoaC	YjeF,_YjeE		
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YjeF,_YjeE		
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YjeF,_YjeE		
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YjeF,_YjeE		
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases	YjeF,_YjeE		
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	YjeF,_YjeE		
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	YjeF,_YjeE		
CBS domain protein sometimes clustered with YjeE	YjeF,_YjeE		
Probable molybdenum cofactor biosynthesis protein MoaC	YjeF,_YjeE		
YjeF protein, N-terminal domain, short variant	YjeF,_YjeE		
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YjeF_AMarbaix	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YjeF_AMarbaix	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	YjeF_AMarbaix	Experimental Subsystems	
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	YjeF_AMarbaix	Experimental Subsystems	
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YjeF_AMarbaix	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	YjeF_AMarbaix	Experimental Subsystems	
putative hydrolase	YjeF_AMarbaix	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	YjeF_AMarbaix	Experimental Subsystems	
ABC transporter ATP-binding protein	YjeF_AMarbaix	Experimental Subsystems	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YjeF_AMarbaix_bis	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YjeF_AMarbaix_bis	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	YjeF_AMarbaix_bis	Experimental Subsystems	
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	YjeF_AMarbaix_bis	Experimental Subsystems	
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	YjeF_AMarbaix_bis	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	YjeF_AMarbaix_bis	Experimental Subsystems	
putative hydrolase	YjeF_AMarbaix_bis	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	YjeF_AMarbaix_bis	Experimental Subsystems	
ABC transporter ATP-binding protein	YjeF_AMarbaix_bis	Experimental Subsystems	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YjeF_TN	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	YjeF_TN	Experimental Subsystems	
Glutamate decarboxylase (EC 4.1.1.15)	YjeF_TN	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YjeF_TN	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	YjeF_TN	Experimental Subsystems	
Dehydratase-associated PGM family protein	YjeF_TN	Experimental Subsystems	
YjeF C-terminal-like	YjeF_TN	Experimental Subsystems	
FIG00828576	YjeF_TN	Experimental Subsystems	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YjeF_TN_allGenomes	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	YjeF_TN_allGenomes	Experimental Subsystems	
Glutamate decarboxylase (EC 4.1.1.15)	YjeF_TN_allGenomes	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YjeF_TN_allGenomes	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	YjeF_TN_allGenomes	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	YjeF_TN_allGenomes	Experimental Subsystems	
Dehydratase-associated PGM family protein	YjeF_TN_allGenomes	Experimental Subsystems	
YjeF C-terminal-like	YjeF_TN_allGenomes	Experimental Subsystems	
FIG00828576	YjeF_TN_allGenomes	Experimental Subsystems	
unknown protein encoded within prophage CP-933V	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
antitermination protein Q	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Phage lysis protein S	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Protein NinG	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
unknown protein encoded by bacteriophage BP-933W	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Putative antirepressor protein of cryptic prophage CP-933M	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
putative endopeptidase	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Protein NinB	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
ORF C81-like	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Phage endolysin	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
putative DNA N-6-adenine methyltransferase	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
similar bacteriphage P22 ninH	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Shiga toxin II subunit A (EC 3.2.2.22)	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Putative DNA-binding protein Roi of bacteriophage BP-933W	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
DNA packaging	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Shiga-like toxin II subunit B precursor	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Outer membrane lipoprotein Rz1	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Lipoprotein Bor	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
phage replication protein P	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Ren protein	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
ORF-66	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
ORF B78	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
P protein	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
ORF B85	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Protein NinE	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
ORF B64	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Shiga toxin I subunit B precursor	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Shiga toxin A-chain precursor (EC 3.2.2.22)	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Phage endopeptidase	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
Putative lysis protein S of prophage CP-933V	CBSS-194948.1.peg.143	Clustering-based subsystems	Shiga toxin cluster
DNA packaging	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Lipoprotein Bor	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
ORF B64	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
ORF B78	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
ORF B85	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
ORF C81-like	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Outer membrane lipoprotein Rz1	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
P protein	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Phage endolysin	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Phage endopeptidase	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Phage lysis protein S	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Protein NinB	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Protein NinE	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Protein NinG	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Putative DNA-binding protein Roi of bacteriophage BP-933W	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Putative antirepressor protein of cryptic prophage CP-933M	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Ren protein	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Shiga toxin A-chain precursor (EC 3.2.2.22)	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Shiga toxin I subunit B precursor	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Shiga toxin II subunit A (EC 3.2.2.22)	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
Shiga-like toxin II subunit B precursor	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
antitermination protein Q	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
putative DNA N-6-adenine methyltransferase	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
putative endopeptidase	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
similar bacteriphage P22 ninH	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
unknown protein encoded by bacteriophage BP-933W	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
unknown protein encoded within prophage CP-933V	ShigaToxin	Clustering-based subsystems	Shiga toxin cluster
antitermination protein Q	ZL_EcoQ	Experimental Subsystems	
Shiga toxin II subunit A (EC 3.2.2.22)	ZL_EcoQ	Experimental Subsystems	
RecA protein	ZL_EcoQ	Experimental Subsystems	
Septum formation protein Maf	Maf	Experimental Subsystems	
Maf-like protein YceF	Maf	Experimental Subsystems	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Methanogens	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	Methanogens	Experimental Subsystems	
Asp/Glu racemase:Aspartate racemase	Methanogens	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	Methanogens	Experimental Subsystems	
RidA/YER057c/UK114 superfamily protein	Methanogens	Experimental Subsystems	
Aspartate racemase (EC 5.1.1.13)	Methanogens	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	YggS_2015		
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	YggS_2015		
Lipoprotein signal peptidase (EC 3.4.23.36)	YggS_2015		
Cell division protein FtsZ (EC 3.4.24.-)	YggS_2015		
Cell division protein FtsA	YggS_2015		
Leucyl-tRNA synthetase (EC 6.1.1.4)	YggS_2015		
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	YggS_2015		
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	YggS_2015		
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	YggS_2015		
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	YggS_2015		
SAM-dependent methyltransferase, MraW methylase family (EC 2.1.1.-)	YggS_2015		
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	YggS_2015		
FIG001583: hypothetical protein, contains S4-like RNA binding domain	YggS_2015		
SepF, FtsZ-interacting protein related to cell division	YggS_2015		
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	YggS_2015		
Acetylornithine aminotransferase (EC 2.6.1.11)	YggS_2015		
Glutamate 5-kinase (EC 2.7.2.11)	YggS_2015		
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	YggS_2015		
UPF0301 protein YqgE	YggS_2015		
COG0762, cell division protein YlmG/Ycf19 (putative), YggT family	YggS_2015		
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	YggS_2015		
Pyridoxal kinase (EC 2.7.1.35)	YggS_2015		
tRNA-i(6)A37 methylthiotransferase	YggS_2015		
Glutathione synthetase (EC 6.3.2.3)	YggS_2015		
Benzoate transport protein	YggS_2015		
YggT family protein YlmG/ssl0353, required for proper distribution of nucleoids in chloroplast and cyanobacteria	YggS_2015		
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_HLL_8/8		
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_HLL_8/8		
Cupin	Folate_HLL_8/8		
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_HLL_8/8		
Dihydropteroate synthase (EC 2.5.1.15)	Folate_HLL_8/8		
Dihydrofolate synthase (EC 6.3.2.12)	Folate_HLL_8/8		
Dihydrofolate reductase (EC 1.5.1.3)	Folate_HLL_8/8		
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Folate_HLL_8/8		
duf556 family protein	Folate_HLL_8/8		
DUF447 family protein	Folate_HLL_8/8		
Related to Dihydropteroate synthase	Folate_HLL_8/8		
Amino acid kinase-like protein, possibly delta 1-pyrroline-5-carboxylate synthetase	Folate_HLL_8/8		
GTP cyclohydrolase III (EC 3.5.4.29)	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
7,8 dihydropteroate synthase (methanopterin)	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
beta-ribofuranosylaminobenzene 5'-phosphate synthase	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Related to Dihydropteroate synthase	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
duf556 family protein	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG1548 family protein	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DUF447 family protein	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG1821 family protein	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Amino acid kinase-like protein, possibly delta 1-pyrroline-5-carboxylate synthetase	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Archaeal flavoprotein COG1036	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Triphosphoribosyl-dephospho-CoA synthetase	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Queuosine biosynthesis QueD, PTPS-I	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate biosynthesis, PTPS-III	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
D-arabino-3-hexulose 6-phosphate formaldehyde lyase / 6-phospho-3-hexuloisomerase	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Methanopterin_biosynthesis2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
beta-ribofuranosylaminobenzene 5'-phosphate synthase	Orf20	Experimental Subsystems	
Related to Dihydropteroate synthase	Orf20	Experimental Subsystems	
duf556 family protein	Orf20	Experimental Subsystems	
COG1548 family protein	Orf20	Experimental Subsystems	
DUF447 family protein	Orf20	Experimental Subsystems	
COG1821 family protein	Orf20	Experimental Subsystems	
Triphosphoribosyl-dephospho-CoA synthetase	Orf20	Experimental Subsystems	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein	Orf20	Experimental Subsystems	
MxaD-like protein	Orf20	Experimental Subsystems	
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	Orf20	Experimental Subsystems	
Amino acid kinase-like protein, possibly delta 1-pyrroline-5-carboxylate synthetase	Orf20	Experimental Subsystems	
GTP cyclohydrolase III (EC 3.5.4.29)	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
7,8 dihydropteroate synthase (methanopterin)	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
beta-ribofuranosylaminobenzene 5'-phosphate synthase	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Related to Dihydropteroate synthase	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
duf556 family protein	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG1548 family protein	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
DUF447 family protein	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG1821 family protein	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Amino acid kinase-like protein, possibly delta 1-pyrroline-5-carboxylate synthetase	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Archaeal flavoprotein COG1036	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Triphosphoribosyl-dephospho-CoA synthetase	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Queuosine biosynthesis QueD, PTPS-I	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate biosynthesis, PTPS-III	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 1	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
D-arabino-3-hexulose 6-phosphate formaldehyde lyase / 6-phospho-3-hexuloisomerase	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	dephospho-tetrahydromethanopterin_biosynthesis_MYousef	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Monosaccharides_2_HGM	Experimental Subsystems	
UDP-glucose 4-epimerase (EC 5.1.3.2)	Monosaccharides_2_HGM	Experimental Subsystems	
L-rhamnose isomerase (EC 5.3.1.14)	Monosaccharides_2_HGM	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Monosaccharides_2_HGM	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	Monosaccharides_2_HGM	Experimental Subsystems	
Aldose 1-epimerase (EC 5.1.3.3)	Monosaccharides_2_HGM	Experimental Subsystems	
Galactokinase (EC 2.7.1.6)	Monosaccharides_2_HGM	Experimental Subsystems	
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	Monosaccharides_2_HGM	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	Monosaccharides_2_HGM	Experimental Subsystems	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Monosaccharides_2_HGM	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Monosaccharides_2_HGM	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	Monosaccharides_2_HGM	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIC component	Monosaccharides_2_HGM	Experimental Subsystems	
N-acetylgalactosamine-6-phosphate deacetylase	Monosaccharides_2_HGM	Experimental Subsystems	
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Monosaccharides_2_HGM	Experimental Subsystems	
Tagatose-6-phosphate kinase (EC 2.7.1.144)	Monosaccharides_2_HGM	Experimental Subsystems	
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	Monosaccharides_2_HGM	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Monosaccharides_2_HGM	Experimental Subsystems	
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Monosaccharides_2_HGM	Experimental Subsystems	
PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	Monosaccharides_2_HGM	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	Monosaccharides_2_HGM	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	Monosaccharides_2_HGM	Experimental Subsystems	
Predicted N-acetyl-glucosamine kinase 2, ROK family (EC 2.7.1.59)	Monosaccharides_2_HGM	Experimental Subsystems	
PTS system, galactosamine-specific IIC component	Monosaccharides_2_HGM	Experimental Subsystems	
PTS system, galactosamine-specific IID component	Monosaccharides_2_HGM	Experimental Subsystems	
Galactosamine-6-phosphate isomerase (galactosamine-6-phosphate deaminase) (EC 5.3.1.-)	Monosaccharides_2_HGM	Experimental Subsystems	
Tagatose-6-phosphate kinase AgaZ (EC 2.7.1.144)	Monosaccharides_2_HGM	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Monosaccharides_2_HGM	Experimental Subsystems	
Predicted N-acetylgalactosamine kinase, COG2971 (EC 2.7.1.157)	Monosaccharides_2_HGM	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Fucose_utilization_HGM	Experimental Subsystems	
L-fucose isomerase (EC 5.3.1.25)	Fucose_utilization_HGM	Experimental Subsystems	
L-fucose mutarotase (EC 5.1.3.n2)	Fucose_utilization_HGM	Experimental Subsystems	
L-fuculokinase (EC 2.7.1.51)	Fucose_utilization_HGM	Experimental Subsystems	
L-fuculose phosphate aldolase (EC 4.1.2.17)	Fucose_utilization_HGM	Experimental Subsystems	
L-fucose mutarotase, type 2 (EC 5.1.3.n2)	Fucose_utilization_HGM	Experimental Subsystems	
L-fucose kinase (EC 2.7.1.52)	Fucose_utilization_HGM	Experimental Subsystems	
Predicted mutarotase	Fucose_utilization_HGM	Experimental Subsystems	
L-fucose mutarotase, type 2	Fucose_utilization_HGM	Experimental Subsystems	
L-fuculose phosphate aldolase, type 2 (EC 4.1.2.17)	Fucose_utilization_HGM	Experimental Subsystems	
FIG01123037: hypothetical protein	Exploration_P	Experimental Subsystems	
Phosphohistidine phosphatase SixA	Exploration_P	Experimental Subsystems	
Caleosin	Cal	Experimental Subsystems	
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Transketolase, N-terminal section (EC 2.2.1.1)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Transketolase, C-terminal section (EC 2.2.1.1)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Acetolactate synthase large subunit (EC 2.2.1.6)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Thioredoxin	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Transketolase (EC 2.2.1.1)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Alkyl hydroperoxide reductase subunit C-like protein	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Thiol peroxidase, Bcp-type (EC 1.11.1.15)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Pyruvate decarboxylase (EC 4.1.1.1)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Peroxiredoxin family protein/glutaredoxin	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Peroxiredoxin	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
AhpE	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Mycoredoxin (EC 1.20.4.3)	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
NADPH-dependent mycothiol reductase Mtr	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Dihydrolipoamide acetyltransferase	Thiamin_damage_peroxiredoxin	Experimental Subsystems	
Glutamate racemase (EC 5.1.1.3)	Glutamate_racemase_Nucleosidase_fusion	Experimental Subsystems	
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	Glutamate_racemase_Nucleosidase_fusion	Experimental Subsystems	
Ribonuclease PH (EC 2.7.7.56)	Glutamate_racemase_Nucleosidase_fusion	Experimental Subsystems	
Metal-dependent hydrolases of the beta-lactamase superfamily III	Glutamate_racemase_Nucleosidase_fusion	Experimental Subsystems	
FIG009886: phosphoesterase	Glutamate_racemase_Nucleosidase_fusion	Experimental Subsystems	
FIG042801: CBS domain containing protein	Glutamate_racemase_Nucleosidase_fusion	Experimental Subsystems	
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Glutamate_racemase_Nucleosidase_fusion	Experimental Subsystems	
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	succinyl-Cys	Experimental Subsystems	
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	succinyl-Cys	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.5.1)	succinyl-Cys	Experimental Subsystems	
Succinate dehydrogenase cytochrome b558 subunit	succinyl-Cys	Experimental Subsystems	
Fumarate hydratase class II (EC 4.2.1.2)	succinyl-Cys	Experimental Subsystems	
Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)	succinyl-Cys	Experimental Subsystems	
Protein of unknown function DUF81	succinyl-Cys	Experimental Subsystems	
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	succinyl-Cys	Experimental Subsystems	
Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)	PhnP_Guillaume	Experimental Subsystems	
Substrate-specific component RibU of riboflavin ECF transporter	PhnP_Guillaume	Experimental Subsystems	
NAD kinase (EC 2.7.1.23)	PhnP_Guillaume	Experimental Subsystems	
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	PhnP_Guillaume	Experimental Subsystems	
FMN adenylyltransferase (EC 2.7.7.2)	PhnP_Guillaume	Experimental Subsystems	
Riboflavin kinase (EC 2.7.1.26)	PhnP_Guillaume	Experimental Subsystems	
COG0613, Predicted metal-dependent phosphoesterases (PHP family)	PhnP_Guillaume	Experimental Subsystems	
RNA:NAD 2'-phosphotransferase	PhnP_Guillaume	Experimental Subsystems	
NAD-dependent protein deacetylase of SIR2 family	PhnP_Guillaume	Experimental Subsystems	
Dihydroorotase (EC 3.5.2.3)	PhnP_Guillaume	Experimental Subsystems	
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	PhnP_Guillaume	Experimental Subsystems	
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	PhnP_Guillaume	Experimental Subsystems	
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	PhnP_Guillaume	Experimental Subsystems	
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	PhnP_Guillaume	Experimental Subsystems	
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	PhnP_Guillaume	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	PhnP_Guillaume	Experimental Subsystems	
Uncharacterized protein COG3236	PhnP_Guillaume	Experimental Subsystems	
ADP-ribosylglycohydrolase	PhnP_Guillaume	Experimental Subsystems	
FIG00031715: Predicted metal-dependent phosphoesterases (PHP family)	PhnP_Guillaume	Experimental Subsystems	
3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)	PhnP_Guillaume	Experimental Subsystems	
Ribosylnicotinamide kinase (EC 2.7.1.22)	PhnP_Guillaume	Experimental Subsystems	
Nudix-related transcriptional regulator NrtR	PhnP_Guillaume	Experimental Subsystems	
PhnP protein	PhnP_Guillaume	Experimental Subsystems	
CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily	PhnP_Guillaume	Experimental Subsystems	
Nicotinamide mononucleotide adenylyltransferase	PhnP_Guillaume	Experimental Subsystems	
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH (EC 2.7.8.37)	PhnP_Guillaume	Experimental Subsystems	
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI (EC 2.7.8.37)	PhnP_Guillaume	Experimental Subsystems	
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase (EC 4.7.1.1)	PhnP_Guillaume	Experimental Subsystems	
Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.55)	PhnP_Guillaume	Experimental Subsystems	
tRNA-splicing 2'-phosphotransferase (EC 2.7.-.-)	PhnP_Guillaume	Experimental Subsystems	
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22)	PhnP_Guillaume	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), eukaryotic PNAT family	PhnP_Guillaume	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	PhnP_Guillaume	Experimental Subsystems	
Lipoate-protein ligase A	LipB-Phosphatase_fusion	Experimental Subsystems	
PhnP protein	LipB-Phosphatase_fusion	Experimental Subsystems	
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase (EC 2.3.1.181)	LipB-Phosphatase_fusion	Experimental Subsystems	
Dihydroneopterin triphosphate pyrophosphohydrolase type 2	LipB-Phosphatase_fusion	Experimental Subsystems	
NUDIX hydrolase	LipB-Phosphatase_fusion	Experimental Subsystems	
Transmembrane protein MT2276, clustered with lipoate gene	LipB-Phosphatase_fusion	Experimental Subsystems	
RDD domain containing protein	LipB-Phosphatase_fusion	Experimental Subsystems	
hydrolase, nudix family protein	LipB-Phosphatase_fusion	Experimental Subsystems	
Lipoate-protein ligase A type 2	LipB-Phosphatase_fusion	Experimental Subsystems	
Lipoate-protein ligase A, C-terminal 70 percent	LipB-Phosphatase_fusion	Experimental Subsystems	
Lipoate-protein ligase A, N-terminal 30 percent	LipB-Phosphatase_fusion	Experimental Subsystems	
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	LipB-Phosphatase_fusion	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	ADPRH-Expt	Experimental Subsystems	
Ribosyl nicotinamide transporter, PnuC-like	ADPRH-Expt	Experimental Subsystems	
Nicotinamidase (EC 3.5.1.19)	ADPRH-Expt	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	ADPRH-Expt	Experimental Subsystems	
Substrate-specific component RibU of riboflavin ECF transporter	ADPRH-Expt	Experimental Subsystems	
Riboflavin kinase (EC 2.7.1.26)	ADPRH-Expt	Experimental Subsystems	
ADP-ribosylglycohydrolase	ADPRH-Expt	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ADPRH-Expt	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	ADPRH-Expt	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	ADPRH-Expt	Experimental Subsystems	
Uncharacterized protein COG3236	ADPRH-Expt	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	ADPRH-Expt	Experimental Subsystems	
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	ADPRH-Expt	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	ADPRH-Expt	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	ADPRH-Expt	Experimental Subsystems	
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	ADPRH-Expt	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	ADPRH-Expt	Experimental Subsystems	
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	ADPRH-Expt	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	ADPRH-Expt	Experimental Subsystems	
Glutamine amidotransferase chain of NAD synthetase	ADPRH-Expt	Experimental Subsystems	
Nudix-related transcriptional regulator NrtR	ADPRH-Expt	Experimental Subsystems	
Ribosylnicotinamide kinase (EC 2.7.1.22)	ADPRH-Expt	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	ADPRH-Expt	Experimental Subsystems	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	ADPRH-Expt	Experimental Subsystems	
Tryptophan 2,3-dioxygenase (EC 1.13.11.11)	ADPRH-Expt	Experimental Subsystems	
Kynureninase (EC 3.7.1.3)	ADPRH-Expt	Experimental Subsystems	
Kynurenine formamidase, bacterial (EC 3.5.1.9)	ADPRH-Expt	Experimental Subsystems	
Niacin transporter NiaP	ADPRH-Expt	Experimental Subsystems	
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)	ADPRH-Expt	Experimental Subsystems	
ADP-ribosylglycohydrolase family protein	ADPRH-Expt	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	ADPRH-Expt	Experimental Subsystems	
ADP-ribosylglycohydrolase (EC 3.2.-.-)	ADPRH-Expt	Experimental Subsystems	
Pseudouridine-5' phosphatase (EC 3.1.3.-)	ADPRH-Expt	Experimental Subsystems	
ADP-ribosylglycohydrolase YegU (EC 3.2.-.-)	ADPRH-Expt	Experimental Subsystems	
putative ADP-ribosylglycohydrolase	ADPRH-Expt	Experimental Subsystems	
ADP-ribosylglycohydrolase family protein YegU	ADPRH-Expt	Experimental Subsystems	
ADP-ribosylglycohydrolase-like	ADPRH-Expt	Experimental Subsystems	
NrtR-regulated ADP-ribosyl-glycohydrolase DraG	ADPRH-Expt	Experimental Subsystems	
FMN adenylyltransferase, type 3 archaeal (EC 2.7.7.2)	ADPRH-Expt	Experimental Subsystems	
GTP cyclohydrolase II (EC 3.5.4.25)	Guillaume_FAD	Experimental Subsystems	
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Guillaume_FAD	Experimental Subsystems	
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Guillaume_FAD	Experimental Subsystems	
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Guillaume_FAD	Experimental Subsystems	
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Guillaume_FAD	Experimental Subsystems	
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Guillaume_FAD	Experimental Subsystems	
Riboflavin kinase (EC 2.7.1.26)	Guillaume_FAD	Experimental Subsystems	
FMN adenylyltransferase (EC 2.7.7.2)	Guillaume_FAD	Experimental Subsystems	
Small primase-like proteins (Toprim domain)	Guillaume_FAD	Experimental Subsystems	
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	Guillaume_FAD	Experimental Subsystems	
FIG000859: hypothetical protein YebC	Guillaume_FAD	Experimental Subsystems	
ADP-ribosylglycohydrolase	Guillaume_FAD	Experimental Subsystems	
Substrate-specific component RibU of riboflavin ECF transporter	Guillaume_FAD	Experimental Subsystems	
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	Guillaume_FAD	Experimental Subsystems	
Pseudouridine-5' phosphatase (EC 3.1.3.-)	Guillaume_FAD	Experimental Subsystems	
Riboflavin transporter PnuX	Guillaume_FAD	Experimental Subsystems	
5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase	Guillaume_FAD	Experimental Subsystems	
Putative FMN hydrolase (EC 3.1.3.-)	Guillaume_FAD	Experimental Subsystems	
Uncharacterized protein COG3236	Guillaume_FAD	Experimental Subsystems	
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM	Guillaume_FAD	Experimental Subsystems	
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation	Guillaume_FAD	Experimental Subsystems	
Adenosine deaminase (EC 3.5.4.4), alternative form	Guillaume_FAD	Experimental Subsystems	
FAD pyrophosphatase (EC 3.6.1.18)	Guillaume_FAD	Experimental Subsystems	
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog	Guillaume_FAD	Experimental Subsystems	
HAD superfamily protein involved in N-acetyl-glucosamine catabolism	Guillaume_FAD	Experimental Subsystems	
2,5-diamino-6-ribitylamino-pyrimidinone 5-phosphate deaminase, fungal (EC 3.5.4.-)	Guillaume_FAD	Experimental Subsystems	
ADP-ribosylglycohydrolase (EC 3.2.-.-)	Guillaume_FAD	Experimental Subsystems	
putative ADP-ribosylglycohydrolase	Guillaume_FAD	Experimental Subsystems	
tRNA pseudouridine synthase B (EC 4.2.1.70)	Guillaume_FAD	Experimental Subsystems	
N-terminal domain of CinA protein, COG1058	Guillaume_FAD	Experimental Subsystems	
C-terminal domain of CinA type S	Guillaume_FAD	Experimental Subsystems	
ADP-ribosylglycohydrolase family protein	Guillaume_FAD	Experimental Subsystems	
ADP-ribosylglycohydrolase YegU (EC 3.2.-.-)	Guillaume_FAD	Experimental Subsystems	
FAD pyrophosphatase (EC 3.6.1.18), putative paralog	Guillaume_FAD	Experimental Subsystems	
CTP-dependent archaeal riboflavin kinase (EC 2.7.1.161)	Guillaume_FAD	Experimental Subsystems	
DNA-binding HTH domain in riboflavin kinase	Guillaume_FAD	Experimental Subsystems	
FMN adenylyltransferase, type 3 archaeal (EC 2.7.7.2)	Guillaume_FAD	Experimental Subsystems	
Riboflavin synthase archaeal (EC 2.5.1.9)	Guillaume_FAD	Experimental Subsystems	
FMN adenylyltransferase, type 2 eukaryotic (EC 2.7.7.2)	Guillaume_FAD	Experimental Subsystems	
FIG00440017: hypothetical protein	Guillaume_FAD	Experimental Subsystems	
2,5-diamino-6-ribosylamino-pyrimidinone 5-phosphate reductase, fungal (EC 1.1.1.302)	Guillaume_FAD	Experimental Subsystems	
HAD-superfamily subfamily IIA hydrolase, TIGR01459	Guillaume_FAD	Experimental Subsystems	
Lumazine protein, riboflavin synthase homolog	Guillaume_FAD	Experimental Subsystems	
Pseudouridylate synthase 8 (EC 5.4.99.28) responsible for modification of cytoplasmic tRNAs at position 32	Guillaume_FAD	Experimental Subsystems	
FMN hydrolase, high substrate specificity (EC 3.1.3.-)	Guillaume_FAD	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	YggS_2015_Minimal		
Cell division protein FtsZ (EC 3.4.24.-)	YggS_2015_Minimal		
Lipoprotein signal peptidase (EC 3.4.23.36)	YggS_2015_Minimal		
Leucyl-tRNA synthetase (EC 6.1.1.4)	YggS_2015_Minimal		
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	YggS_2015_Minimal		
DNA topoisomerase I (EC 5.99.1.2)	YggS_2015_Minimal		
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	YggS_2015_Minimal		
Putative Holliday junction resolvase YqgF	YggS_2015_Minimal		
Cell division initiation protein DivIVA	YggS_2015_Minimal		
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	YggS_2015_Minimal		
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	YggS_2015_Minimal		
SepF, FtsZ-interacting protein related to cell division	YggS_2015_Minimal		
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	YggS_2015_Minimal		
Predicted transcriptional regulator of pyridoxine metabolism	YggS_2015_Minimal		
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	YggS_2015_Minimal		
Acetylornithine aminotransferase (EC 2.6.1.11)	YggS_2015_Minimal		
Glutamate 5-kinase (EC 2.7.2.11)	YggS_2015_Minimal		
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	YggS_2015_Minimal		
Septum formation protein Maf	YggS_2015_Minimal		
UPF0301 protein YqgE	YggS_2015_Minimal		
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)	YggS_2015_Minimal		
COG0762, cell division protein YlmG/Ycf19 (putative), YggT family	YggS_2015_Minimal		
Pyridoxal kinase (EC 2.7.1.35)	YggS_2015_Minimal		
tRNA-i(6)A37 methylthiotransferase	YggS_2015_Minimal		
Glutathione synthetase (EC 6.3.2.3)	YggS_2015_Minimal		
Twitching motility protein PilT	YggS_2015_Minimal		
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	YggS_2015_Minimal		
Benzoate transport protein	YggS_2015_Minimal		
GTP cyclohydrolase I (EC 3.5.4.16) type 1	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Queuosine biosynthesis QueD, PTPS-I	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueE Radical SAM	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Queuosine Biosynthesis QueC ATPase	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase (EC 1.7.1.13)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
tRNA-guanine transglycosylase (EC 2.4.2.29)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Putative preQ0 transporter	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Permease of the drug/metabolite transporter (DMT) superfamily	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
GTP cyclohydrolase I (EC 3.5.4.16) type 2	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) PUA domain	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
NADPH dependent preQ0 reductase-like	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
COG2047: Uncharacterized protein (ATP-grasp superfamily)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
glutamyl-Q-tRNA synthetase	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Epoxyqueuosine (oQ) reductase QueG	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Archaeosine cluster gene X	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 short	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Glutamine amidotransferases class-II (GATase)	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
Hypothetical protein DUF2419	RZ_Queuosine_Biosynthesis	RNA Metabolism	RNA processing and modification
DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Dephospho-CoA kinase (EC 2.7.1.24)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Pantoate--beta-alanine ligase (EC 6.3.2.1)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
2-dehydropantoate 2-reductase (EC 1.1.1.169)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
ThiJ/PfpI family protein	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Chaperone protein hchA	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
General stress protein 18	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
Chaperone Hsp31	Gycation_repair_-_CoA_synthesis	Experimental Subsystems	
DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
ThiJ/PfpI family protein	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
Chaperone protein hchA	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
Enoyl-CoA hydratase [branched-chain amino acid degradation] (EC 4.2.1.17)	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
General stress protein 18	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
Chaperone Hsp31	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
PUTATIVE ACYL-COA SYNTHETASE PROTEIN	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
Acyl-CoA dehydrogenase PA4979	Glycation_repair_-_CoA_utilization	Experimental Subsystems	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Glutamate decarboxylase (EC 4.1.1.15)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
GCN5-related N-acetyltransferase	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Serine acetyltransferase (EC 2.3.1.30)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Dehydratase-associated PGM family protein	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
YjeF C-terminal-like	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
FIG00828576	YjeF_NAD(P)HX_epimerase-dehydratase	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	Thiamin_THI4_Jared	Experimental Subsystems	
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	B1-Purines	Experimental Subsystems	
Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)	B1-Purines	Experimental Subsystems	
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	B1-Purines	Experimental Subsystems	
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	B1-Purines	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	B1-Purines	Experimental Subsystems	
N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18)	B1-Purines	Experimental Subsystems	
N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	B1-Purines	Experimental Subsystems	
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	B1-Purines	Experimental Subsystems	
Adenylosuccinate lyase (EC 4.3.2.2)	B1-Purines	Experimental Subsystems	
Type I secretion outer membrane protein, TolC precursor	B1-Purines	Experimental Subsystems	
Flavanone-3-hydroxylase (EC 1.14.13.21)	Flavonoids_test	Secondary Metabolism	Biosynthesis of phenylpropanoids
Flavanone-3-hydroxylase (EC 1.14.11.9)	Flavonoids_test	Secondary Metabolism	Biosynthesis of phenylpropanoids
Flavonol synthase (EC 1.14.11.23)	Flavonoids_test	Secondary Metabolism	Biosynthesis of phenylpropanoids
Dihydroflavonol-4-reductase (EC 1.1.1.219)	Flavonoids_test	Secondary Metabolism	Biosynthesis of phenylpropanoids
HesA/MoeB/ThiF family protein	CBSS-3702.11.peg.3259		
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	CBSS-3702.11.peg.3259		
NADH dehydrogenase [ubiquinone] iron-sulfur protein 1 (EC 1.6.5.3) (EC 1.6.99.3)	CBSS-3702.11.peg.3259		
Putative uncharacterized protein Sb10g009000 [source:UniProtKB/TrEMBL;Acc:C5Z7X3_SORBI]	CBSS-3702.11.peg.3259		
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I	CBSS-3702.11.peg.3259		
Aspartyl-tRNA synthetase (EC 6.1.1.12)	CBSS-3702.11.peg.3259		
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	CBSS-3702.11.peg.3259		
Histidyl-tRNA synthetase (EC 6.1.1.21)	CBSS-3702.11.peg.3259		
Cysteine desulfurase (EC 2.8.1.7)	CBSS-3702.11.peg.3259		
Iron-sulfur cluster regulator IscR	CBSS-3702.11.peg.3259		
RecD-like DNA helicase YrrC	CBSS-3702.11.peg.3259		
Tetratricopeptide repeat (TPR) family protein	CBSS-3702.11.peg.3259		
Uncharacterized ATPase (AAA family) associated with cysteine desulfurase	CBSS-3702.11.peg.3259		
tRNA-specific 2-thiouridylase MnmA	CBSS-3702.11.peg.3259		
Prespore specific transcriptional activator RsfA	CBSS-3702.11.peg.3259		
FIG01230561: hypothetical protein	CBSS-3702.11.peg.3259		
Adenine phosphoribosyltransferase (EC 2.4.2.7)	CBSS-3702.11.peg.3259		
Molybdopterin biosynthesis protein MoeB	CBSS-3702.11.peg.3259		
ATPase, AAA family	CBSS-3702.11.peg.3259		
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	CBSS-3702.11.peg.3259		
Lipoprotein releasing system ATP-binding protein LolD	CBSS-3702.11.peg.3259		
Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)	CBSS-3702.11.peg.3259		
FIG01242636: hypothetical protein	CBSS-3702.11.peg.3259		
BH1264 unknown conserved protein in B. subtilis	CBSS-3702.11.peg.3259		
Uncharacterized protein yrzK	CBSS-3702.11.peg.3259		
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	CBSS-3702.11.peg.3259		
YrzK	CBSS-3702.11.peg.3259		
CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Aspartyl-tRNA synthetase (EC 6.1.1.12)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Histidyl-tRNA synthetase (EC 6.1.1.21)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
RND multidrug efflux transporter; Acriflavin resistance protein	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Cysteine desulfurase (EC 2.8.1.7)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Iron-sulfur cluster regulator IscR	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Prespore specific transcriptional activator RsfA	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Adenine phosphoribosyltransferase (EC 2.4.2.7)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
GTP pyrophosphokinase (EC 2.7.6.5)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
PTS system, cellobiose-specific IIB component (EC 2.7.1.69)	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Dolichol-phosphate mannosyltransferase( EC:2.4.1.83 )	Hypothetical_protein_of_HesA/MoeB/ThiF_family		
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	B6_S	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	B6_S	Experimental Subsystems	
ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	B6_S	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	B6_S	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	B6_S	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	B6_S	Experimental Subsystems	
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	B6_S	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	B6_S	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	B6_S	Experimental Subsystems	
Glutamate decarboxylase (EC 4.1.1.15)	B6_S	Experimental Subsystems	
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	B6_S	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	B6_S	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6) / Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	B6_S	Experimental Subsystems	
Pyridoxal reductase (EC 1.1.1.65)	B6_S	Experimental Subsystems	
Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing), synthase subunit (EC 4.3.3.6)	B6_S	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
Polyphosphate kinase (EC 2.7.4.1)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
ABC transporter ATP-binding protein	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
Phosphatidylglycerophosphatase A (EC 3.1.3.27)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
Phosphatidylglycerophosphatase B (EC 3.1.3.27)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	Thiamin_triphosphate_biosynthesis	Experimental Subsystems	
Phosphoglycolate phosphatase (EC 3.1.3.18)	PGP	Experimental Subsystems	
6-phosphofructokinase (EC 2.7.1.11)	PGP	Experimental Subsystems	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	PGP	Experimental Subsystems	
Triosephosphate isomerase (EC 5.3.1.1)	PGP	Experimental Subsystems	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	PGP	Experimental Subsystems	
Phosphoglycerate kinase (EC 2.7.2.3)	PGP	Experimental Subsystems	
Enolase (EC 4.2.1.11)	PGP	Experimental Subsystems	
Pyruvate kinase (EC 2.7.1.40)	PGP	Experimental Subsystems	
Phosphoenolpyruvate synthase (EC 2.7.9.2)	PGP	Experimental Subsystems	
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	PGP	Experimental Subsystems	
Hypothetical NagD-like phosphatase	PGP	Experimental Subsystems	
Glucose-6-phosphate isomerase (EC 5.3.1.9)	PGP	Experimental Subsystems	
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	PGP	Experimental Subsystems	
Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)	PGP	Experimental Subsystems	
Glyoxylate reductase (EC 1.1.1.79)	PGP	Experimental Subsystems	
Ribulokinase (EC 2.7.1.16)	PGP	Experimental Subsystems	
Xylulose kinase (EC 2.7.1.17)	PGP	Experimental Subsystems	
Phosphoglycerate mutase (EC 5.4.2.11)	PGP	Experimental Subsystems	
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	PGP	Experimental Subsystems	
2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274)	PGP	Experimental Subsystems	
Arabinose operon protein AraL	PGP	Experimental Subsystems	
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	PGP	Experimental Subsystems	
Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem	PGP	Experimental Subsystems	
Hexokinase (EC 2.7.1.1)	PGP	Experimental Subsystems	
Phosphoglycolate phosphatase, archaeal type (EC 3.1.3.18)	PGP	Experimental Subsystems	
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (EC 1.2.1.9)	PGP	Experimental Subsystems	
Putative phosphoglycolate phosphatase (EC 3.1.3.18 )	PGP	Experimental Subsystems	
tgtA5 cluster protein 1	DGQHR-like	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	DGQHR-like	Experimental Subsystems	
Adenine-specific methyltransferase (EC 2.1.1.72)	DGQHR-like	Experimental Subsystems	
DNA sulfur modification protein DndB	DGQHR-like	Experimental Subsystems	
3'-phosphoadenosine 5'-phosphosulfate sulfurtransferase DndC	DGQHR-like	Experimental Subsystems	
DNA adenine methylase (EC 2.1.1.72)	DGQHR-like	Experimental Subsystems	
dgqhr domain protein	DGQHR-like	Experimental Subsystems	
DGQHR domain protein	DGQHR-like	Experimental Subsystems	
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	yciO	RNA Metabolism	
Hypothetical YciO protein, TsaC/YrdC paralog	yciO	RNA Metabolism	
Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	yciO	RNA Metabolism	
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	yciO	RNA Metabolism	
[NiFe] hydrogenase metallocenter assembly protein HypF	yciO	RNA Metabolism	
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2	yciO	RNA Metabolism	
COG0613, Predicted metal-dependent phosphoesterases (PHP family)	yciO	RNA Metabolism	
Segregation and condensation protein A	yciO	RNA Metabolism	
Segregation and condensation protein B	yciO	RNA Metabolism	
TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	yciO	RNA Metabolism	
DNA sulfur modification protein DndD	Phosphorothioation_in_DNA	DNA Metabolism	
DNA sulfur modification protein DndB	Phosphorothioation_in_DNA	DNA Metabolism	
3'-phosphoadenosine 5'-phosphosulfate sulfurtransferase DndC	Phosphorothioation_in_DNA	DNA Metabolism	
DNA sulfur modification protein DndE	Phosphorothioation_in_DNA	DNA Metabolism	
NifS-like cysteine desulfurase DndA	Phosphorothioation_in_DNA	DNA Metabolism	
			
Thiamin pyrophosphokinase (EC 2.7.6.2)	ATTP_Biosynthesis	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	ATTP_Biosynthesis	Experimental Subsystems	
Polyphosphate kinase (EC 2.7.4.1)	ATTP_Biosynthesis	Experimental Subsystems	
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	ATTP_Biosynthesis	Experimental Subsystems	
ABC transporter ATP-binding protein	ATTP_Biosynthesis	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	ATTP_Biosynthesis	Experimental Subsystems	
Phosphatidylglycerophosphatase A (EC 3.1.3.27)	ATTP_Biosynthesis	Experimental Subsystems	
Phosphatidylglycerophosphatase B (EC 3.1.3.27)	ATTP_Biosynthesis	Experimental Subsystems	
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	ATTP_Biosynthesis	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	ATTP_Biosynthesis	Experimental Subsystems	
CofC, F420 2-Phospho-l-lactate Guanylyltransferase	ATTP_Biosynthesis	Experimental Subsystems	
Histidinol-phosphatase (EC 3.1.3.15)	PGP_glyceroltransferase_fusion	Experimental Subsystems	
Glycosyltransferase	PGP_glyceroltransferase_fusion	Experimental Subsystems	
Phosphoglycolate phosphatase (EC 3.1.3.18)	PGP_glyceroltransferase_fusion	Experimental Subsystems	
Glycosyl transferase, group 1	PGP_glyceroltransferase_fusion	Experimental Subsystems	
Phosphoheptose isomerase (EC 5.3.1.-)	PGP_glyceroltransferase_fusion	Experimental Subsystems	
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-)	PGP_glyceroltransferase_fusion	Experimental Subsystems	
ADP-heptose synthase (EC 2.7.-.-)	PGP_glyceroltransferase_fusion	Experimental Subsystems	
D-glycero-beta-D-manno-heptose 7-phosphate kinase	PGP_glyceroltransferase_fusion	Experimental Subsystems	
ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-)	PGP_glyceroltransferase_fusion	Experimental Subsystems	
Carbamoyltransferase	PGP_glyceroltransferase_fusion	Experimental Subsystems	
ATP-dependent DNA helicase RecQ	YY-cl3-de_novo	Experimental Subsystems	
tgtA5 cluster protein 3	YY-cl3-de_novo	Experimental Subsystems	
FIG00641120: hypothetical protein	YY-cl3-de_novo	Experimental Subsystems	
Lhr-like helicases	YY-cl3-de_novo	Experimental Subsystems	
FIG00638899: hypothetical protein	YY-cl3-de_novo	Experimental Subsystems	
Glycerol dehydrogenase (EC 1.1.1.6)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Triosephosphate isomerase (EC 5.3.1.1)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Hypothetical NagD-like phosphatase	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
L-arabinose isomerase (EC 5.3.1.4)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Ribulokinase (EC 2.7.1.16)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Glycerol kinase (EC 2.7.1.30)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
Arabinose operon protein AraL	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
2,5-diketo-D-gluconic acid reductase (EC 1.1.1.-)	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
putative nucleotide sugar-1-phosphate transferase	Glycerol-1-phosphate_dehydrogenase_HAD_fusion	Experimental Subsystems	
ATPase component CbiO of energizing module of cobalt ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Additional substrate-specific component CbiN of cobalt ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein CbiG	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamine-related hypothetical metal-binding protein CrdX	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-3b C17-methyltransferase	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6 synthase, anaerobic	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyric acid synthase (EC 6.3.5.10)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyrinic acid A,C-diamide synthase	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CbiM of cobalt ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Threonine kinase in B12 biosynthesis	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Transmembrane component CbiQ of energizing module of cobalt ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, ATPase component BtuD	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(II)alamin reductase	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CbrT of predicted cobalamin ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt ABC transporter periplasmic component	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5,6-dimethylbenzimidazole synthase, flavin destructase family	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
HoxN/HupN/NixA family cobalt transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter CbtA	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ChlD component of cobalt chelatase involved in B12 biosynthesis	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ChlI component of cobalt chelatase involved in B12 biosynthesis	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CobN component of cobalt chelatase involved in B12 biosynthesis	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Thermoplasma	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein CobG	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Precorrin-6A synthase (EC 2.1.1.152)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Mycobacteria	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Optional hypothetical component of the B12 transporter BtuN	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Bacteroides_Porphyromonas	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CobW GTPase involved in cobalt insertion for B12 biosynthesis	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
HupE-UreJ family cobalt transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2)	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CblX, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CblY, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter CbtC	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Optional hypothetical component of the B12 transporter BtuM	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Additional lipoprotein component of predicted cobalamin ECF transporter	Coenzyme_B12_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate aminotransferase (EC 2.6.1.1)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate--ammonia ligase (EC 6.3.1.1)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate ammonia-lyase (EC 4.3.1.1)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-asparaginase (EC 3.5.1.1)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type I (EC 6.3.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate racemase (EC 5.1.1.3)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-asparaginase I, cytoplasmic (EC 3.5.1.1)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutaminase (EC 3.5.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate racemase (EC 5.1.1.13)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine amidotransferase protein GlxB (EC 2.4.2.-)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
glutamine synthetase family protein	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnB	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) YisO	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnH	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase family protein in hypothetical Actinobacterial gene cluster	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase (EC 6.3.1.2)	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2), eukaryotic type	Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Thiazole synthase (EC 2.8.1.10)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Pantoate--beta-alanine ligase (EC 6.3.2.1)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Aspartate 1-decarboxylase (EC 4.1.1.11)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
BAT family transporter	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	BAT_family_thiamin-related_transporter	Experimental Subsystems	
Substrate-specific component ThiW of predicted thiazole ECF transporter	BAT_family_thiamin-related_transporter	Experimental Subsystems	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rhodanese-like domain required for thiamine synthesis	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, substrate-binding component	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, transmembrane component	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, ATPase component	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, ATPase component	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiT of thiamin ECF transporter	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative phosphatase YieH	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiW of predicted thiazole ECF transporter	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted hydroxymethylpyrimidine transporter CytX	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter PnuT	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiazole transporter ThiU	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-regulated outer membrane receptor Omr1	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
TenA2, thiaminase II (EC 3.5.99.2) homolog involved in salvage of thiamin pyrimidine moiety	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiT	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin transport gene THI10	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
High-affinity proton/thiamine symporter Thi9	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Extracytoplasmic thiamin (pyrophosphate?) binding lipoprotein p37, specific for Mycoplasma	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transport system permease protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ABC transporter ATP-binding protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Plasma membrane thiamine transporter (Vertebrata)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Peroxisomal membrane carrier for NAD(+)	CLO_thiaminPP_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
ThiJ/PfpI family protein	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Cysteine desulfurase (EC 2.8.1.7)	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Hydroxyethylthiazole kinase (EC 2.7.1.50)	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
COG2363	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Sulfur carrier protein ThiS	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Thiazole synthase (EC 2.8.1.10)	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Sulfur acceptor protein SufE for iron-sulfur cluster assembly	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Thiamine biosynthesis protein thiI	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Predicted thiazole transporter ThiU	COG2363	Miscellaneous	Plant-Prokaryote comparative genomics
Glycine oxidase ThiO (EC 1.4.3.19)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ThMPase type I predicted	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ThMPase type II predicted	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin monophosphate phosphatase (EC 3.1.3.-)	Experimental_ThMP_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Guillaume_Thiamin	Experimental Subsystems	
Rhodanese-like domain required for thiamine synthesis	Guillaume_Thiamin	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Guillaume_Thiamin	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Guillaume_Thiamin	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Guillaume_Thiamin	Experimental Subsystems	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Guillaume_Thiamin	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Guillaume_Thiamin	Experimental Subsystems	
Thiamin ABC transporter, substrate-binding component	Guillaume_Thiamin	Experimental Subsystems	
Thiamin ABC transporter, transmembrane component	Guillaume_Thiamin	Experimental Subsystems	
Thiamin ABC transporter, ATPase component	Guillaume_Thiamin	Experimental Subsystems	
ADP-ribosylglycohydrolase	Guillaume_Thiamin	Experimental Subsystems	
Sulfur carrier protein adenylyltransferase ThiF	Guillaume_Thiamin	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	Guillaume_Thiamin	Experimental Subsystems	
Thiazole synthase (EC 2.8.1.10)	Guillaume_Thiamin	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Guillaume_Thiamin	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Guillaume_Thiamin	Experimental Subsystems	
Sulfur carrier protein ThiS	Guillaume_Thiamin	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Guillaume_Thiamin	Experimental Subsystems	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	Guillaume_Thiamin	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	Guillaume_Thiamin	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Guillaume_Thiamin	Experimental Subsystems	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Guillaume_Thiamin	Experimental Subsystems	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Guillaume_Thiamin	Experimental Subsystems	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Guillaume_Thiamin	Experimental Subsystems	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Guillaume_Thiamin	Experimental Subsystems	
Hydroxymethylpyrimidine ABC transporter, ATPase component	Guillaume_Thiamin	Experimental Subsystems	
Substrate-specific component ThiT of thiamin ECF transporter	Guillaume_Thiamin	Experimental Subsystems	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	Guillaume_Thiamin	Experimental Subsystems	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Guillaume_Thiamin	Experimental Subsystems	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Guillaume_Thiamin	Experimental Subsystems	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Guillaume_Thiamin	Experimental Subsystems	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Guillaume_Thiamin	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Guillaume_Thiamin	Experimental Subsystems	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Guillaume_Thiamin	Experimental Subsystems	
ADP-ribosylglycohydrolase family protein	Guillaume_Thiamin	Experimental Subsystems	
ADP-ribosylglycohydrolase (EC 3.2.-.-)	Guillaume_Thiamin	Experimental Subsystems	
Substrate-specific component ThiW of predicted thiazole ECF transporter	Guillaume_Thiamin	Experimental Subsystems	
Thiamine kinase (EC 2.7.1.89)	Guillaume_Thiamin	Experimental Subsystems	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	Guillaume_Thiamin	Experimental Subsystems	
Predicted hydroxymethylpyrimidine transporter CytX	Guillaume_Thiamin	Experimental Subsystems	
Predicted thiamin transporter PnuT	Guillaume_Thiamin	Experimental Subsystems	
ADP-ribosylglycohydrolase YegU (EC 3.2.-.-)	Guillaume_Thiamin	Experimental Subsystems	
Predicted thiazole transporter ThiU	Guillaume_Thiamin	Experimental Subsystems	
Thiamin-regulated outer membrane receptor Omr1	Guillaume_Thiamin	Experimental Subsystems	
putative ADP-ribosylglycohydrolase	Guillaume_Thiamin	Experimental Subsystems	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Guillaume_Thiamin	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	Guillaume_Thiamin	Experimental Subsystems	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Guillaume_Thiamin	Experimental Subsystems	
Predicted thiamin transporter ThiT	Guillaume_Thiamin	Experimental Subsystems	
Mitochondrial DNA damage tolerance	Guillaume_Thiamin	Experimental Subsystems	
Hydroxymethylpyrimidine synthesis protein THI5	Guillaume_Thiamin	Experimental Subsystems	
Thiamin transport gene THI10	Guillaume_Thiamin	Experimental Subsystems	
High-affinity proton/thiamine symporter Thi9	Guillaume_Thiamin	Experimental Subsystems	
Predicted thiamin transporter ThiV, SSS family	Guillaume_Thiamin	Experimental Subsystems	
Extracytoplasmic thiamin (pyrophosphate?) binding lipoprotein p37, specific for Mycoplasma	Guillaume_Thiamin	Experimental Subsystems	
Transport system permease protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Guillaume_Thiamin	Experimental Subsystems	
ABC transporter ATP-binding protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Guillaume_Thiamin	Experimental Subsystems	
Thiamine-triphosphatase (EC 3.6.1.28)	Guillaume_Thiamin	Experimental Subsystems	
Plasma membrane thiamine transporter (Vertebrata)	Guillaume_Thiamin	Experimental Subsystems	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	Guillaume_Thiamin	Experimental Subsystems	
Thiaminase 1 (EC 2.5.1.2), putative	Guillaume_Thiamin	Experimental Subsystems	
ADP-ribosylglycohydrolase-like	Guillaume_Thiamin	Experimental Subsystems	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Guillaume_Thiamin	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / ADP-ribosylglycohydrolase	Guillaume_Thiamin	Experimental Subsystems	
ADP-ribosylglycohydrolase family protein YegU	Guillaume_Thiamin	Experimental Subsystems	
YjbQ (alternate ThiE)	Guillaume_Thiamin	Experimental Subsystems	
NrtR-regulated ADP-ribosyl-glycohydrolase DraG	Guillaume_Thiamin	Experimental Subsystems	
Thiaminase 1 (EC 2.5.1.2)	Guillaume_Thiamin	Experimental Subsystems	
Substrate-specific component HmpT of predicted hydroxymethylpyrimidine ECF transporter	Guillaume_Thiamin	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	TenA	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	TenA	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	TenA	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	TenA	Experimental Subsystems	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	TenA	Experimental Subsystems	
Thiazole synthase (EC 2.8.1.10)	TenA	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	TenA	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	TenA	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	TenA	Experimental Subsystems	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	TenA	Experimental Subsystems	
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	TenA	Experimental Subsystems	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	TenA	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with conserved Glu in active site	TenA	Experimental Subsystems	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	TenA	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	TenA	Experimental Subsystems	
Thiamin ABC transporter, substrate-binding component	TenA	Experimental Subsystems	
Predicted hydroxymethylpyrimidine transporter CytX	TenA	Experimental Subsystems	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	TenA	Experimental Subsystems	
Substrate-specific component ThiW of predicted thiazole ECF transporter	TenA	Experimental Subsystems	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	TenA	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	TenA	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	TenA	Experimental Subsystems	
Thiamine kinase (EC 2.7.1.89)	TenA	Experimental Subsystems	
thiamine biosynthesis protein ThiS	TenA	Experimental Subsystems	
Thiamine biosynthesis protein ThiF	TenA	Experimental Subsystems	
Predicted thiamin transporter ThiT	TenA	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rhodanese-like domain required for thiamine synthesis	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, substrate-binding component	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, transmembrane component	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, ATPase component	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Enolase (EC 4.2.1.11)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, ATPase component	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiT of thiamin ECF transporter	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
TenA2, thiaminase II (EC 3.5.99.2) homolog involved in salvage of thiamin pyrimidine moiety	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiW of predicted thiazole ECF transporter	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted hydroxymethylpyrimidine transporter CytX	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter PnuT	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiazole transporter ThiU	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-regulated outer membrane receptor Omr1	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiT	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine biosynthesis protein thiI	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin transport gene THI10	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
High-affinity proton/thiamine symporter Thi9	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Extracytoplasmic thiamin (pyrophosphate?) binding lipoprotein p37, specific for Mycoplasma	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transport system permease protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ABC transporter ATP-binding protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Plasma membrane thiamine transporter (Vertebrata)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Peroxisomal membrane carrier for NAD(+)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
YjbQ (alternate ThiE)	Test_-_Thiamin	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	ThiD_Alternative	Experimental Subsystems	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD_Alternative	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	ThiD_Alternative	Experimental Subsystems	
Thiazole synthase (EC 2.8.1.10)	ThiD_Alternative	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	ThiD_Alternative	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	ThiD_Alternative	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD_Alternative	Experimental Subsystems	
thiamine biosynthesis protein ThiS	ThiD_Alternative	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	ThiD_Alternative	Experimental Subsystems	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	ThiD_Alternative	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	ThiD_Alternative	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	ThiD_Alternative	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	ThiD_Alternative	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with conserved Glu in active site	ThiD_Alternative	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	ThiD_Alternative	Experimental Subsystems	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	ThiD_Alternative	Experimental Subsystems	
Thiamine biosynthesis protein ThiF	ThiD_Alternative	Experimental Subsystems	
Thiamine kinase (EC 2.7.1.89)	ThiD_Alternative	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiazole synthase (EC 2.8.1.10)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
thiamine biosynthesis protein ThiS	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with conserved Glu in active site	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiamine biosynthesis protein ThiF	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
Thiamine kinase (EC 2.7.1.89)	ThiD_Alternative_(ThiD2)	Experimental Subsystems	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Glycine oxidase ThiO (EC 1.4.3.19)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiazole synthase (EC 2.8.1.10)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Sulfur carrier protein ThiS	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with conserved Glu in active site	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxyethylthiazole kinase (EC 2.7.1.50)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiazole tautomerase TenI (EC 5.3.99.10)	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Uncharacterized domain 2 associated with ThiE	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Uncharacterized domain 3 associated with ThiE	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Uncharacterized domain 1 associated with ThiE	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
N-terminal extention unique for Nocardioides	ThiD_ThiE_fusions	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cys-tRNA(Pro) deacylase YbaK	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
TenA2, thiaminase II (EC 3.5.99.2) homolog involved in salvage of thiamin pyrimidine moiety	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
YjbQ (alternate ThiE)	Thiamin_Copy_RZ	Cofactors, Vitamins, Prosthetic Groups, Pigments	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rhodanese-like domain required for thiamine synthesis	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, substrate-binding component	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, transmembrane component	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, ATPase component	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, ATPase component	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiT of thiamin ECF transporter	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiW of predicted thiazole ECF transporter	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted hydroxymethylpyrimidine transporter CytX	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter PnuT	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiazole transporter ThiU	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-regulated outer membrane receptor Omr1	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiT	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin transport gene THI10	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
High-affinity proton/thiamine symporter Thi9	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiV, SSS family	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Extracytoplasmic thiamin (pyrophosphate?) binding lipoprotein p37, specific for Mycoplasma	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transport system permease protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ABC transporter ATP-binding protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Plasma membrane thiamine transporter (Vertebrata)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
YjbQ (alternate ThiE)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component HmpT of predicted hydroxymethylpyrimidine ECF transporter	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Peroxisomal membrane carrier for NAD(+)	Thiamin_biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ThMPase type I predicted	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ThMPase type II predicted	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin monophosphate phosphatase (EC 3.1.3.-)	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ThMPase type III predicted	Thiamin_biosynthesis_-ThMP_phosphatase	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Thiazole synthase (EC 2.8.1.10)	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Sulfur carrier protein ThiS	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
thiamin biosynthesis ThiS	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
thiamine biosynthesis protein ThiS	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Thiamin biosynthesis protein ThiC	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
thiamine biosynthesis protein ThiS, putative	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
C-terminally thiocarboxylated form is intermediate sulfur donor in thiazole formation; part of ThiF/ThiS complex; complexes with ThiG also	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
thiamine-phosphate diphosphorylase	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
ThiS, thiamine-biosynthesis	Thiamin_biosynthesis_Human_non-gut_microbiome	Experimental Subsystems	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rhodanese-like domain required for thiamine synthesis	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, substrate-binding component	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, transmembrane component	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, ATPase component	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
L-cystine uptake protein TcyP	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, ATPase component	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiT of thiamin ECF transporter	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiW of predicted thiazole ECF transporter	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted hydroxymethylpyrimidine transporter CytX	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter PnuT	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiazole transporter ThiU	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-regulated outer membrane receptor Omr1	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiT	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin transport gene THI10	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
High-affinity proton/thiamine symporter Thi9	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Plasma membrane thiamine transporter (Vertebrata)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Peroxisomal membrane carrier for NAD(+)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
YjbQ (alternate ThiE)	Thiamin_biosynthesis_LDP	Cofactors, Vitamins, Prosthetic Groups, Pigments	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rhodanese-like domain required for thiamine synthesis	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, substrate-binding component	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, transmembrane component	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, ATPase component	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, ATPase component	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiT of thiamin ECF transporter	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiW of predicted thiazole ECF transporter	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted hydroxymethylpyrimidine transporter CytX	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter PnuT	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiazole transporter ThiU	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-regulated outer membrane receptor Omr1	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiT	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin transport gene THI10	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
High-affinity proton/thiamine symporter Thi9	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiV, SSS family	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Extracytoplasmic thiamin (pyrophosphate?) binding lipoprotein p37, specific for Mycoplasma	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transport system permease protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ABC transporter ATP-binding protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Plasma membrane thiamine transporter (Vertebrata)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
YjbQ (alternate ThiE)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component HmpT of predicted hydroxymethylpyrimidine ECF transporter	test2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly	At2g25870	Predictions based on plant-prokaryote comparative analysis	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	At2g25870	Predictions based on plant-prokaryote comparative analysis	
NAD(P)H-hydrate epimerase (EC 5.1.99.6)	At2g25870	Predictions based on plant-prokaryote comparative analysis	
Sugar phosphatase YidA (EC 3.1.3.23)	At2g25870	Predictions based on plant-prokaryote comparative analysis	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	At2g25870	Predictions based on plant-prokaryote comparative analysis	
Putative phosphatase YigL, haloacid dehalogenase-like phosphatase family	At2g25870	Predictions based on plant-prokaryote comparative analysis	
Aspartokinase (EC 2.7.2.4)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine dehydrogenase (EC 1.1.1.3)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine kinase (EC 2.7.1.39)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine synthase (EC 4.2.3.1)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate aminotransferase (EC 2.6.1.1)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted functional analog of homoserine kinase (EC 2.7.1.-)	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L-lactate dehydrogenase (EC 1.1.2.3)	Lactate_utilization	Carbohydrates	Organic acids
D-Lactate dehydrogenase (EC 1.1.2.5)	Lactate_utilization	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE	Lactate_utilization	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Lactate_utilization	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Lactate_utilization	Carbohydrates	Organic acids
L-lactate permease	Lactate_utilization	Carbohydrates	Organic acids
Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing	Lactate_utilization	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Enterobacteria, GntR family	Lactate_utilization	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Firmicutes, GntR family	Lactate_utilization	Carbohydrates	Organic acids
Predicted L-lactate dehydrogenase, hypothetical protein subunit SO1518	Lactate_utilization	Carbohydrates	Organic acids
Predicted Lactate-responsive regulator, IclR family	Lactate_utilization	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Betaproteobacteria, LysR family	Lactate_utilization	Carbohydrates	Organic acids
Predicted Lactate-responsive regulator, LysR family	Lactate_utilization	Carbohydrates	Organic acids
Lactate-responsive regulator LldR in Actinobacteria, GntR family	Lactate_utilization	Carbohydrates	Organic acids
Predicted lactate-responsive transcriptional regulator of ykgEFG LDH gene cluster, LysR-type	Lactate_utilization	Carbohydrates	Organic acids
L-aspartate oxidase (EC 1.4.3.16)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate synthetase (EC 2.5.1.72)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD synthetase (EC 6.3.1.5)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Glutamine amidotransferase chain of NAD synthetase	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD kinase (EC 2.7.1.23)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamidase (EC 3.5.1.19)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
ADP-ribose pyrophosphatase (EC 3.6.1.13)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosomal silencing factor RsfA (former Iojap)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
DNA ligase (EC 6.5.1.2)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD-dependent protein deacetylase of SIR2 family	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
C-terminal domain of CinA type S	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Kynurenine formamidase, bacterial (EC 3.5.1.9)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
L-Aspartate dehydrogenase (EC 1.4.1.21)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Tryptophan 2,3-dioxygenase (EC 1.13.11.11)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Kynureninase (EC 3.7.1.3)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosyl nicotinamide transporter, PnuC-like	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
LSU m3Psi1915 methyltransferase RlmH	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Hydrolase (HAD superfamily), YqeK	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamidase/isochorismatase family protein	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamidase family protein YcaC	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
N-Ribosylnicotinamide phosphorylase (EC 2.4.2.1)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Niacin transporter NiaP	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
ATPase component of general energizing module of ECF transporters	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Transmembrane component of general energizing module of ECF transporters	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Transcriptional repressor for NAD biosynthesis in gram-positives	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Predicted N-ribosylNicotinamide CRP-like regulator	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nudix-related transcriptional regulator NrtR	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosylnicotinamide kinase (EC 2.7.1.22)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NadR transcriptional regulator	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NMN phosphatase (EC 3.1.3.5)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
DNA ligase (EC 6.5.1.2), LigB	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
C-terminal domain of CinA paralog, YdeJ	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
C-terminal domain of CinA type E	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Amidases related to nicotinamidase	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Substrate-specific component NiaX of predicted niacin ECF transporter	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Kynurenine 3-monooxygenase (EC 1.14.13.9)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotine adenine dinucleotide glycohydrolase (NADGH) (EC 3.2.2.5)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Indoleamine 2,3-dioxygenase (EC 1.13.11.52)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NrtR-regulated hypothetical NrtY, PpnK-type ATP-NAD kinase domain	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NrtR-regulated hypothetical NrtX, Band 7 protein domain	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NMN 5'-nucleotidase, extracellular (EC 3.1.3.5)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Mono(ADP-ribosyl)transferase SpvB (EC 2.4.2.31)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Kynurenine formamidase (EC 3.5.1.9)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NMN synthetase (EC 6.3.1.-)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate-nucleotide adenylyltransferase, NadM family (EC 2.7.7.18)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), eukaryotic PNAT family	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide N-methyltransferase (EC 2.1.1.1)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Kynurenine formamidase, yeast-type BNA7 (EC 3.5.1.9)	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Niacin transporter in yeast, DAL5 family	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
C-terminal domain of CinA type S homolog	NAD_and_NADP_cofactor_biosynthesis_global	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-)	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA:Cm32/Um32 methyltransferase	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
conserved protein with predicted RNA binding PUA domain	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Predicted RNA methylase COG2263	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
COG2106 Methylase	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Predicted RNA-binding protein COG1491	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Predicted Zn-ribbon RNA-binding protein with a function in translation	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Putative RNA-binding protein COG1094	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
tRNA pseudouridine 55 synthase (EC 4.2.1.70)	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Fibrillarin	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
rRNA biogenesis protein Nop5/Nop56	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
LSU ribosomal protein L7Ae	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
gar1 - like small nucleolar rnp	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Ribosome biogenesis protein Nop10	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
COG3269, Predicted RNA-binding protein, contains TRAM domain	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
Predicted N6-adenine-specific RNA methylase containing THUMP domain	rRNA_modification_Archaea	RNA Metabolism	RNA processing and modification
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase (EC 4.2.1.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase 2 (EC 4.2.1.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate lyase alpha chain (EC 4.1.3.6)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate lyase beta chain (EC 4.1.3.6)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate synthase (si) (EC 2.3.3.1)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class I (EC 4.2.1.2)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class II (EC 4.2.1.2)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Malate dehydrogenase (EC 1.1.1.37)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Malate:quinone oxidoreductase (EC 1.1.5.4)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Transcriptional regulator of succinyl CoA synthetase operon	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase X, predicted	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase large subunit (EC 4.2.1.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
hypothetical protein that often co-occurs with aconitase	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
ATP-citrate (pro-S-)-lyase, subunit 2 (EC 2.3.3.8)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase small subunit (EC 4.2.1.3)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
ATP-citrate (pro-S-) -lyase (EC 2.3.3.8)	TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Tyrosyl-tRNA synthetase (EC 6.1.1.1)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Threonyl-tRNA synthetase (EC 6.1.1.3)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Leucyl-tRNA synthetase (EC 6.1.1.4)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Lysyl-tRNA synthetase (class I) (EC 6.1.1.6)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Alanyl-tRNA synthetase (EC 6.1.1.7)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Valyl-tRNA synthetase (EC 6.1.1.9)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Methionyl-tRNA synthetase (EC 6.1.1.10)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Seryl-tRNA synthetase (EC 6.1.1.11)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA synthetase (EC 6.1.1.12)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Glycyl-tRNA synthetase (EC 6.1.1.14)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA synthetase (EC 6.1.1.17)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Arginyl-tRNA synthetase (EC 6.1.1.19)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Histidyl-tRNA synthetase (EC 6.1.1.21)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15), archaeal/eukaryal type	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Protein-export membrane protein SecD (TC 3.A.5.1.1)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Protein-export membrane protein SecF (TC 3.A.5.1.1)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Preprotein translocase secY subunit (TC 3.A.5.1.1)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Thioredoxin reductase (EC 1.8.1.9)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Glutaminyl-tRNA synthetase (EC 6.1.1.18)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Thioredoxin	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
FIG042921: similarity to aminoacyl-tRNA editing enzymes YbaK, ProX	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Seryl-tRNA synthetase (EC 6.1.1.11), archaeal	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
O-phosphoseryl-tRNA(Cys) synthetase (EC 6.1.1.27)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Pyrrolysyl-tRNA synthetase (EC 6.1.1.26)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
ProX deacylase	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15), mitochondrial	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15), chloroplast	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Cys-tRNA(Pro) deacylase YbaK	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Uncharacterized protein YeaK	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
YbaK/prolyl-tRNA synthetase associated region	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
ProX deacylase type 2	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
YbaK/ProX-family protein CD1969	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Uncharacterized protein PA2301	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
COG3118: Thioredoxin domain-containing protein EC-YbbN	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Uncharacterized protein P3TCK_24851	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Uncharacterized protein Mlr1045	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Ybak-like proteins type 1	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
YbaK/prolyl-tRNA synthetase associated protein	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
EbsC protein	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase-related protein 1	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
EBSC protein	tRNA_synthetase_relationships	Protein Metabolism	Protein biosynthesis
Homoserine dehydrogenase (EC 1.1.1.3)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine O-succinyltransferase (EC 2.3.1.46)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-synthase (EC 2.5.1.48)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-lyase (EC 4.4.1.8)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-lyase (EC 4.4.1.1)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-synthase (EC 4.2.1.22)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter ATP-binding protein	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter permease protein	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter substrate-binding protein	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylmethionine synthetase (EC 2.5.1.6)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
SAM-dependent methlytransferase YrrT	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-ribosylhomocysteine lyase (EC 4.4.1.21)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine kinase (EC 2.7.1.39)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homocysteine S-methyltransferase (EC 2.1.1.10)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Serine acetyltransferase (EC 2.3.1.30)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase (EC 2.5.1.47)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine O-acetyltransferase (EC 2.3.1.31)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine repressor MetJ	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Transcriptional activator MetR	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Substrate-specific component MtsA of methionine-regulated ECF transporter	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Adenosylhomocysteinase (EC 3.3.1.1)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted regulator of methionine metabolism, ArsR family	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
SAM-dependent methlytransferase UbiG	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine synthase activation domain (EC 2.1.1.13)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine transporter MetT	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-lyase, type II (EC 4.4.1.8)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Archaeal S-adenosylmethionine synthetase (EC 2.5.1.6)	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Novel homocysteine synthase, archaeal	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Ferredoxin required for homocysteine synthase, archaeal	Methionine_Biosynthesis	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Testing_PF	Experimental Subsystems	
Glycyl-tRNA synthetase (EC 6.1.1.14)	Testing_PF	Experimental Subsystems	
Catalase (EC 1.11.1.6)	Testing_PF	Experimental Subsystems	
Ribokinase (EC 2.7.1.15)	Testing_PF	Experimental Subsystems	
Pyruvate kinase (EC 2.7.1.40)	Testing_PF	Experimental Subsystems	
Tryptophan synthase (indole-salvaging) (EC 4.2.1.122)	Testing_PF	Experimental Subsystems	
Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA	Testing_PF	Experimental Subsystems	
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Testing_PF	Experimental Subsystems	
5'-nucleotidase YjjG (EC 3.1.3.5)	Testing_PF	Experimental Subsystems	
Mevalonate kinase (EC 2.7.1.36)	Testing_PF	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Testing_PF	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	GH-tgtA5	Experimental Subsystems	
tgtA5 cluster protein 1	GH-tgtA5	Experimental Subsystems	
tgtA5 cluster protein 2	GH-tgtA5	Experimental Subsystems	
tgtA5 cluster protein 3	GH-tgtA5	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	GH-tgtA5	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	GH-tgtA5	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	GH-tgtA5	Experimental Subsystems	
Lhr-like helicases	GH-tgtA5	Experimental Subsystems	
COG0419: ATPase involved in DNA repair	GH-tgtA5	Experimental Subsystems	
ATP-dependent DNA helicase RecQ	GH-tgtA5	Experimental Subsystems	
COG0553: Superfamily II DNA/RNA helicases, SNF2 family	GH-tgtA5	Experimental Subsystems	
RNA polymerase associated protein RapA (EC 3.6.1.-)	GH-tgtA5	Experimental Subsystems	
PLD-like domain	GH-tgtA5	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	GH-tgtA5	Experimental Subsystems	
Exonuclease SbcC	GH-tgtA5	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	GH-tgtA5	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	GH-tgtA5	Experimental Subsystems	
Putative preQ0 transporter YhhQ	GH-tgtA5	Experimental Subsystems	
ATP-dependent DNA helicase UvrD/PcrA	GH-tgtA5	Experimental Subsystems	
7-cyano-7-deazaguanine synthase (EC 6.3.4.20)	GH-tgtA5	Experimental Subsystems	
Putative preQ0 transporter	GH-tgtA5	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	GH-tgtA5	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	GH-tgtA5	Experimental Subsystems	
PD-(D/E)XK nuclease superfamily	GH-tgtA5	Experimental Subsystems	
COG2251, Predicted RecB family nuclease	GH-tgtA5	Experimental Subsystems	
NurA nuclease superfamily protein	GH-tgtA5	Experimental Subsystems	
yjgR-type ATPase	GH-tgtA5	Experimental Subsystems	
MUG-like Uracil-DNA glycosylase enzyme family	GH-tgtA5	Experimental Subsystems	
DEAD/DEAH box helicase-like protein	GH-tgtA5	Experimental Subsystems	
Alpha-L-fucosidase (EC 3.2.1.51)	HMP_Fucosides	Carbohydrates	Monosaccharides
Glutamyl-tRNA reductase (EC 1.2.1.70)	ALAS	Experimental Subsystems	
5-aminolevulinate synthase (EC 2.3.1.37)	ALAS	Experimental Subsystems	
Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	ALAS	Experimental Subsystems	
Arginine deiminase (EC 3.5.3.6)	RidA_proteins	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	RidA_proteins	Experimental Subsystems	
Carbamate kinase (EC 2.7.2.2)	RidA_proteins	Experimental Subsystems	
RidA	RidA_proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	RidA_proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	RidA_proteins	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	RidA_proteins	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	RidA_proteins	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	RidA_proteins	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	RidA_proteins	Experimental Subsystems	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	RidA_proteins	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	RidA_proteins	Experimental Subsystems	
Cyanate hydratase (EC 4.2.1.104)	RidA_proteins	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	RidA_proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	RidA_proteins	Experimental Subsystems	
pyridoxal phosphate-dependent deaminase, putative	RidA_proteins	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	RidA_proteins	Experimental Subsystems	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	RidA_proteins	Experimental Subsystems	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	RidA_proteins	Experimental Subsystems	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	RidA_proteins	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	RidA_proteins	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	RidA_proteins	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	RidA_proteins	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	RidA_proteins	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	RidA_proteins	Experimental Subsystems	
Urea carboxylase (EC 6.3.4.6)	RidA_proteins	Experimental Subsystems	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	RidA_proteins	Experimental Subsystems	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	RidA_proteins	Experimental Subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	RidA_proteins	Experimental Subsystems	
Ornithine cyclodeaminase (EC 4.3.1.12)	RidA_proteins	Experimental Subsystems	
BH2577 unknown conserved protein in B. subtilis	RidA_proteins	Experimental Subsystems	
Tryptophanase (EC 4.1.99.1)	RidA_proteins	Experimental Subsystems	
Threonine dehydratase, catabolic (EC 4.3.1.19)	RidA_proteins	Experimental Subsystems	
Type III PLP	RidA_proteins	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	RidA_proteins	Experimental Subsystems	
Beta-ureidopropionase (EC 3.5.1.6)	RidA_proteins	Experimental Subsystems	
Probable L-amino-acid oxidase (EC 1.4.3.2)	RidA_proteins	Experimental Subsystems	
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	RidA_proteins	Experimental Subsystems	
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	RidA_proteins	Experimental Subsystems	
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	RidA_proteins	Experimental Subsystems	
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	RidA_proteins	Experimental Subsystems	
Opine oxidase subunit B	RidA_proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	RidA_proteins	Experimental Subsystems	
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG	RidA_proteins	Experimental Subsystems	
Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)	RidA_proteins	Experimental Subsystems	
FAD oxidoreductase	RidA_proteins	Experimental Subsystems	
L-serine dehydratase 1 (EC 4.3.1.17)	RidA_proteins	Experimental Subsystems	
DNA internalization-related competence protein ComEC/Rec2	tRNA_Gln_1	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate pyrophosphohydolase type 2	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminodeoxychorismate lyase (EC 4.1.3.38)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate synthase (EC 6.3.2.12)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folylpolyglutamate synthase (EC 6.3.2.17)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate reductase (EC 1.5.1.3)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
FolM Alternative dihydrofolate reductase 1	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate epimerase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Serine hydroxymethyltransferase (EC 2.1.2.1)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidylate synthase (EC 2.1.1.45)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidine kinase (EC 2.7.1.21)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase II (EC 3.5.4.25)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
S-adenosylmethionine synthetase (EC 2.5.1.6)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Thymidylate synthase thyX (EC 2.1.1.-)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
tRNA:m(5)U-54 MTase gid	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
ATPase component of general energizing module of ECF transporters	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Transmembrane component of general energizing module of ECF transporters	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
COG0488: ATPase components of ABC transporters with duplicated ATPase domains	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative dihydrofolate reductase 3	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative dihydrofolate reductase 2	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative para-aminobenzoate biosynthesis enzyme CT610	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative Folylglutamate Synthase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Putative DHNTP pyrophosphatase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Substrate-specific component FolT of folate ECF transporter	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Non functional Dihydropteroate synthase 2	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate pyrophosphohydolase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Related to Dihydropteroate synthase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
MptD, archaeal dihydroneopterin aldolase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
MptE, archaeal 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin phosphate phosphatase	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate transporter 3	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
PTPS-VI	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
PTPS-V	Folate_Biosynthesis	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
FIG137478: Hypothetical protein YbgI	COG0327	Experimental Subsystems	
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	COG0327	Experimental Subsystems	
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	COG0327	Experimental Subsystems	
Lactam utilization protein LamB	COG0327	Experimental Subsystems	
DNA primase (EC 2.7.7.-)	COG0327	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.5.1)	COG0327	Experimental Subsystems	
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	COG0327	Experimental Subsystems	
RNA polymerase sigma factor RpoD	COG0327	Experimental Subsystems	
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	COG0327	Experimental Subsystems	
Bsu YqfO NIF3/CutA domain	COG0327	Experimental Subsystems	
Endonuclease VIII	COG0327	Experimental Subsystems	
UPF0135 protein Bsu YqfO	COG0327	Experimental Subsystems	
Tripeptide aminopeptidase (EC 3.4.11.4)	COG0327	Experimental Subsystems	
Zn-ribbon protein, possibly nucleic acid-binding	COG0327	Experimental Subsystems	
tRNA (adenine(22)-N(1))-methyltransferase (EC 2.1.1.217)	COG0327	Experimental Subsystems	
Membrane-attached cytochrome c550	COG0327	Experimental Subsystems	
Di/tripeptide permease YbgH	COG0327	Experimental Subsystems	
FIG008220: hypothetical protein	COG0327	Experimental Subsystems	
NIF3-related protein	COG0327	Experimental Subsystems	
Putative tRNA-m1A22 methylase	COG0327	Experimental Subsystems	
FIG146262: hypothetical protein	COG0327	Experimental Subsystems	
FIG00892489: hypothetical protein	COG0327	Experimental Subsystems	
Prolyl-tRNA synthetase (EC 6.1.1.15), archaeal/eukaryal type	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Aspartyl-tRNA synthetase (EC 6.1.1.12)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
RidA/YER057c/UK114 superfamily protein	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Threonine synthase (EC 4.2.3.1)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Tryptophan synthase beta chain like (EC 4.2.1.20)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Putative stomatin/prohibitin-family membrane protease subunit YbbK	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Thioredoxin reductase (EC 1.8.1.9)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Histidinol dehydrogenase (EC 1.1.1.23)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Ornithine cyclodeaminase (EC 4.3.1.12)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Copper-translocating P-type ATPase (EC 3.6.3.4)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Cu+ P-type ATPase	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Thioredoxin	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Superoxide dismutase [Mn] (EC 1.15.1.1)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Thiamin pyrophosphokinase (EC 2.7.6.2)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Superoxide dismutase [Fe] (EC 1.15.1.1)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
FIG042921: similarity to aminoacyl-tRNA editing enzymes YbaK, ProX	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Fosmidomycin resistance protein	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
ProX deacylase	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15), mitochondrial	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15), chloroplast	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Cys-tRNA(Pro) deacylase YbaK	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Uncharacterized protein YeaK	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
COG1639	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
YbaK/prolyl-tRNA synthetase associated region	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Copper sensory histidine kinase CpxA	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
ProX deacylase type 2	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
YheO-like PAS domain	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
POTASSIUM/PROTON ANTIPORTER ROSB	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
YbaK/ProX-family protein CD1969	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Uncharacterized protein PA2301	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
COG3118: Thioredoxin domain-containing protein EC-YbbN	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
HTH-type transcriptional regulator cueR	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Uncharacterized protein P3TCK_24851	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Uncharacterized protein Mlr1045	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Ybak-like proteins type 1	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
YbaK/prolyl-tRNA synthetase associated protein	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
EbsC protein	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase-related protein 1	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase related protein	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
domain similar to potassium antiporter	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Prolyl-tRNA synthetase (EC 6.1.1.15)	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
EBSC protein	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
copA	Prolyl-tRNA_synthetase_associated_editing_enzymes	Protein Metabolism	Protein biosynthesis
Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3)	Metal_chelatases		
Sirohydrochlorin ferrochelatase activity of CysG (EC 4.99.1.4)	Metal_chelatases		
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Metal_chelatases		
Cobalamin synthase (EC 2.7.8.26)	Metal_chelatases		
Cobalt-precorrin 5A hydrolase (EC 3.7.1.12)	Metal_chelatases		
Porphobilinogen synthase (EC 4.2.1.24)	Metal_chelatases		
Porphobilinogen deaminase (EC 2.5.1.61)	Metal_chelatases		
Uroporphyrinogen-III synthase (EC 4.2.1.75)	Metal_chelatases		
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Metal_chelatases		
Precorrin-2 oxidase (EC 1.3.1.76)	Metal_chelatases		
Siroheme decarboxylase AhbA, alternate heme biosynthesis pathway	Metal_chelatases		
Siroheme decarboxylase AhbB, alternate heme biosynthesis pathway	Metal_chelatases		
Radical SAM heme biosynthesis protein AhbC, 12,18-didecarboxysirohaem deacetylase	Metal_chelatases		
Radical SAM heme biosynthesis protein AhbD, Fe-coproporphyrin III decarboxylase	Metal_chelatases		
Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)	Metal_chelatases		
Coproporphyrin ferrochelatase (EC 4.99.1.-)	Metal_chelatases		
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Metal_chelatases		
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Metal_chelatases		
Coproheme decarboxylase HemQ (no EC)	Metal_chelatases		
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Metal_chelatases		
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Metal_chelatases		
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	Metal_chelatases		
Sirohydrochlorin cobaltochelatase CbiX(long) (EC 4.99.1.3)	Metal_chelatases		
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Metal_chelatases		
Sirohydrochlorin ferrochelatase activity of CbiK (EC 4.99.1.4)	Metal_chelatases		
Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2)	Metal_chelatases		
CobW GTPase involved in cobalt insertion for B12 biosynthesis	Metal_chelatases		
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2)	Metal_chelatases		
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2)	Metal_chelatases		
Precorrin-3B synthase	Metal_chelatases		
ChlD component of cobalt chelatase involved in B12 biosynthesis	Metal_chelatases		
ChlI component of cobalt chelatase involved in B12 biosynthesis	Metal_chelatases		
Sirohydrochlorin ferrochelatase CbiX, alphaprotobacterial (EC 4.99.1.4)	Metal_chelatases		
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	Que-2_	Experimental Subsystems	
tgtA5 cluster protein 1	Que-2_	Experimental Subsystems	
tgtA5 cluster protein 2	Que-2_	Experimental Subsystems	
tgtA5 cluster protein 3	Que-2_	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	Que-2_	Experimental Subsystems	
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Que-2_	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	Que-2_	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Que-2_	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	Que-2_	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	Que-2_	Experimental Subsystems	
Lhr-like helicases	Que-2_	Experimental Subsystems	
COG0419: ATPase involved in DNA repair	Que-2_	Experimental Subsystems	
ATP-dependent DNA helicase RecQ	Que-2_	Experimental Subsystems	
COG0553: Superfamily II DNA/RNA helicases, SNF2 family	Que-2_	Experimental Subsystems	
Epoxyqueuosine (oQ) reductase QueG	Que-2_	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	Que-2_	Experimental Subsystems	
PLD-like domain	Que-2_	Experimental Subsystems	
Alcohol dehydrogenase (EC 1.1.1.1)	Que-2_	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Que-2_	Experimental Subsystems	
Putative preQ0 transporter	Que-2_	Experimental Subsystems	
Exonuclease SbcC	Que-2_	Experimental Subsystems	
glutamyl-Q-tRNA synthetase	Que-2_	Experimental Subsystems	
FIG00638899: hypothetical protein	Que-2_	Experimental Subsystems	
COG0582: Integrase	Que-2_	Experimental Subsystems	
FIG01046728: hypothetical protein	Que-2_	Experimental Subsystems	
Fosfomycin resistance protein FosA	Que-2_	Experimental Subsystems	
CcdB toxin protein	Que-2_	Experimental Subsystems	
CcdA protein (antitoxin to CcdB)	Que-2_	Experimental Subsystems	
7-cyano-7-deazaguanine reductase	Que-2_	Experimental Subsystems	
HNH nuclease	Que-2_	Experimental Subsystems	
DNA sulfur modification protein DndB	Que-2_	Experimental Subsystems	
3'-phosphoadenosine 5'-phosphosulfate sulfurtransferase DndC	Que-2_	Experimental Subsystems	
COG0527: Aspartokinases	Que-2_	Experimental Subsystems	
putative DEAD/DEAH box helicase	Que-2_	Experimental Subsystems	
Glutamyl-tRNA synthetase (EC 6.1.1.17)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamyl-tRNA reductase (EC 1.2.1.70)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen synthase (EC 4.2.1.24)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Porphobilinogen deaminase (EC 2.5.1.61)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase (EC 4.2.1.75)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative uroporphyrinogen-III C-methyltransferase	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Precorrin-2 oxidase (EC 1.3.1.76)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin ferrochelatase activity of CysG (EC 4.99.1.4)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase (EC 2.7.8.26)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproheme decarboxylase HemQ (no EC)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Coproporphyrin ferrochelatase (EC 4.99.1.-)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM heme biosynthesis protein AhbD, Fe-coproporphyrin III decarboxylase	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin ferrochelatase activity of CbiK (EC 4.99.1.4)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nitrite reductase (EC 1.7.2.1)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirJ	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirF	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirD	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirG	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirL	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Heme d1 biosynthesis protein NirH	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
5-aminolevulinate synthase (EC 2.3.1.37)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Siroheme decarboxylase AhbA, alternate heme biosynthesis pathway	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Siroheme decarboxylase AhbB, alternate heme biosynthesis pathway	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Radical SAM heme biosynthesis protein AhbC, 12,18-didecarboxysirohaem deacetylase	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Hypothetical, related to broad specificity phosphatases COG0406	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Distant homolog of E. coli HemX protein in Xanthomonadaceae	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin ferrochelatase CbiX, alphaprotobacterial (EC 4.99.1.4)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase in Bacteroidetes, divergent, putative (EC 4.2.1.75)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Uroporphyrinogen-III synthase in Rickettsia, divergent, putative (EC 4.2.1.75)	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
putative monooxygenase domain	Heme_Biosynthesis:_protoporphyrin-,_coproporphyrin-_and_siroheme-dependent_pathways	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Riboflavin kinase (EC 2.7.1.26)	test_HMP	Experimental Subsystems	
FIG00820733: hypothetical protein, Rv0207c	Mycobacterial_heme_acquisition_system	Iron acquisition and metabolism	
Transmembrane heme transport protein MmpL3	Mycobacterial_heme_acquisition_system	Iron acquisition and metabolism	
FIG01121868: Possible membrane protein, Rv0205	Mycobacterial_heme_acquisition_system	Iron acquisition and metabolism	
FIG01121868: Possible membrane protein, Rv0204c	Mycobacterial_heme_acquisition_system	Iron acquisition and metabolism	
Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system	Mycobacterial_heme_acquisition_system	Iron acquisition and metabolism	
Transmembrane heme transport protein MmpL11	Mycobacterial_heme_acquisition_system	Iron acquisition and metabolism	
Membrane protein Rv0201c	Mycobacterial_heme_acquisition_system	Iron acquisition and metabolism	
RidA/YER057c/UK114 superfamily protein	TN_COG2945		
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	TN_COG2945		
Threonine dehydratase biosynthetic (EC 4.3.1.19)	TN_COG2945		
RidA/YER057c/UK114 superfamily, group 1	TN_COG2945		
RidA/YER057c/UK114 superfamily, group 6	TN_COG2945		
COG2945 alpha/beta hydrolase	TN_COG2945		
Cysteine desulfurase (EC 2.8.1.7)	TN_COG2945		
RidA fragment or small ORF	TN_COG2945		
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	TN_COG2945		
RidA/YER057c/UK114 superfamily, group 5	TN_COG2945		
RidA/YER057c/UK114 superfamily, 3 tandem domains	TN_COG2945		
RidA/YER057c/UK114 superfamily, group 4	TN_COG2945		
RidA/YER057c/UK114 superfamily, 2 tandem domains	TN_COG2945		
RidA/YER057c/UK114 superfamily, 4 tandem domains	TN_COG2945		
Dihydroneopterin aldolase (EC 4.1.2.25)	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
FolM Alternative dihydrofolate reductase 1	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
Queuosine biosynthesis QueD, PTPS-I	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 1	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
COG1496: Uncharacterized conserved protein	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
COG1565: Uncharacterized conserved protein	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
Dihydroneopterin triphosphate epimerase	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 2	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
Folate biosynthesis, PTPS-III	COG1565-new	Miscellaneous	Plant-Prokaryote comparative genomics
Aspartate 1-decarboxylase (EC 4.1.1.11)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Ketopantoate reductase PanG (EC 1.1.1.169)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate--beta-alanine ligase (EC 6.3.2.1)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase (EC 2.7.1.33)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase (EC 2.7.1.24)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Substrate-specific component PanT of predicted pantothenate ECF transporter	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
2-dehydropantoate 2-reductase (EC 1.1.1.169)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Ketol-acid reductoisomerase (EC 1.1.1.86)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
COG0385 sodium-dependent transporter	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	CoA_Pantothenate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Vitamin B12 ABC transporter, ATPase component BtuD	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, B12-binding component BtuF	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Vitamin B12 ABC transporter, permease component BtuC	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase (EC 2.7.8.26)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyric acid synthase (EC 6.3.5.10)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6A reductase (EC 1.3.1.54)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-7 (C5)-methyltransferase (EC 2.1.1.289)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6B C15-methyltransferase [decarboxylating] (EC 2.1.1.196)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin 5A hydrolase (EC 3.7.1.12)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6 synthase, anaerobic	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6x reductase (EC 1.3.1.54)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein CbiG	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin synthase	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobyrinic acid A,C-diamide synthase	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-3b C17-methyltransferase	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ChlD component of cobalt chelatase involved in B12 biosynthesis	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ChlI component of cobalt chelatase involved in B12 biosynthesis	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
CobN component of cobalt chelatase involved in B12 biosynthesis	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CbiM of cobalt ECF transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Transmembrane component CbiQ of energizing module of cobalt ECF transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
ATPase component CbiO of energizing module of cobalt ECF transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Additional substrate-specific component CbiN of cobalt ECF transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Substrate-specific component CbrT of predicted cobalamin ECF transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Optional hypothetical component of the B12 transporter BtuN	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Outer membrane vitamin B12 receptor BtuB	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter CbtC	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt ABC transporter periplasmic component	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt ABC transporter, periplasmic substrate-binding component CnoA	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt ABC transporter, permease protein CnoB	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt ABC transporter, permease protein CnoC	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt ABC transporter, ATP-binding protein CnoD	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Bacteroides_Porphyromonas	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalamin biosynthesis protein CobG	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
HoxN/HupN/NixA family cobalt transporter	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter CbtA	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Cobalt-precorrin-3b C17-methyltransferase (EC 2.1.1.131)	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in Mycobacteria	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria	B12_Cobalamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Tetrapyrroles
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
NAD synthetase (EC 6.3.1.5)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamidase (EC 3.5.1.19)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Substrate-specific component NiaX of predicted niacin ECF transporter	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosyl nicotinamide transporter, PnuC-like	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nudix-related transcriptional regulator NrtR	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Transcriptional repressor for NAD biosynthesis in gram-positives	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate phosphoribosyltransferase (EC 6.3.4.21)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
L-aspartate oxidase (EC 1.4.3.16)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate synthetase (EC 2.5.1.72)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Niacin transporter NiaP	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Kynureninase (EC 3.7.1.3)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Predicted nicotinate-regulated transporter BH3254	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
L-Aspartate dehydrogenase (EC 1.4.1.21)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Ribosylnicotinamide kinase (EC 2.7.1.22)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
nicotinamide mononucleotide transporter PnuC	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Kynurenine 3-monooxygenase (EC 1.14.13.9)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)	NAD_Niacin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	NAD and NADP
Substrate-specific component BioY of biotin ECF transporter	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Dethiobiotin synthetase (EC 6.3.3.3)	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthase (EC 2.8.1.6)	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioH	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioC	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Transmembrane component BioN of energizing module of biotin ECF transporter	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
ATPase component BioM of energizing module of biotin ECF transporter	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein BioG	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Pimeloyl-CoA synthase (EC 6.2.1.14)	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin transporter YigM, drug/metabolite transporter (DMT) superfamily	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Biotin synthesis protein bioZ	Biotin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Biotin
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Novel pyridoxal kinase, thiD family (EC 2.7.1.35)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Predicted transcriptional regulator of pyridoxine metabolism	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal kinase (EC 2.7.1.35)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing), glutaminase subunit (EC 4.3.3.6)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing), synthase subunit (EC 4.3.3.6)	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Duplicated ATPase component of energizing module of predicted pyridoxine-related ECF transporter	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Transmembrane component of energizing module of predicted pyridoxine-related ECF transporter	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Substrate-specific component PdxU of predicted pyridoxine ECF transporter	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Substrate-specific component PdxT of predicted pyridoxine ECF transporter	Pyridoxin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Pyridoxine
Substrate-specific component RibU of riboflavin ECF transporter	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin kinase (EC 2.7.1.26)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
GTP cyclohydrolase II (EC 3.5.4.25)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin transporter PnuX	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
6,7-dimethyl-8-ribityllumazine synthase	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Predicted riboflavin transporter, EamA family	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
3,4-dihydroxy-2-butanone 4-phosphate synthase	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin synthase alpha chain (EC 2.5.1.9)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Predicted riboflavin ABC transporter, transmembrane component	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Predicted riboflavin ABC transporter, substrate-binding component	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin ABC transporter, periplasmic riboflavin-binding protein RfuA	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin ABC transporter, ATP-binding protein RfuB	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin ABC transporter, permease protein RfuC	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
Riboflavin ABC transporter, permease protein RfuD	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
GTP cyclohydrolase II	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
riboflavin synthase subunit alpha	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
riboflavin synthase, alpha subunit	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain)	Riboflavin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Riboflavin, FMN, FAD
RidA/YER057c/UK114 superfamily, group 1	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Alanine racemase (EC 5.1.1.1)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Aspartate aminotransferase (EC 2.6.1.1)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Aspartate carbamoyltransferase (EC 2.1.3.2)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Dihydroorotase (EC 3.5.2.3)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Orotate phosphoribosyltransferase (EC 2.4.2.10)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
N-acetylglutamate synthase (EC 2.3.1.1)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylglutamate kinase (EC 2.7.2.8)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Ornithine carbamoyltransferase (EC 2.1.3.3)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Argininosuccinate synthase (EC 6.3.4.5)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Argininosuccinate lyase (EC 4.3.2.1)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Oxidoreductase, aldo/keto reductase family	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cystathionine beta-lyase (EC 4.4.1.8)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Carbamate kinase (EC 2.7.2.2)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylornithine deacetylase (EC 3.5.1.16)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Arginine deiminase (EC 3.5.3.6)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
oxidoreductase of aldo/keto reductase family, subgroup 1	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Oxidoreductase	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Putative oxidoreductase	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Probable L-amino-acid oxidase (EC 1.4.3.2)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine dehydratase, catabolic (EC 4.3.1.19)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Aldo/keto reductase	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
putative oxidoreductase	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
D-cysteine desulfhydrase (EC 4.4.1.15)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11) @ N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
D-serine ammonia-lyase (EC 4.3.1.18)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Diaminopropionate ammonia-lyase (EC 4.3.1.15)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 3 tandem domains	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 3	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Tyrosine phenol-lyase (EC 4.1.99.2)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 4 tandem domains	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA fragment or small ORF	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
oxidoreductase, aldo/keto reductase family	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
monooxygenase, putative	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
3-hydroxy-D-aspartate aldolase (EC 4.1.3.41)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine dehydratase (EC 4.3.1.19)	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
aldo/keto reductase family	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
aldo-keto reductase domain	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Threonine/serine dehydratases	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
FAD oxidoreductase	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1) in a prenylated indole derivative biosynthesis cluster	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 2 tandem domains	GB_RidA_family_in_981_representative_prokaryotes	Metabolite damage and its repair or mitigation	
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine deacetylase (EC 3.5.1.16)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine pathway regulatory protein ArgR, repressor of arg regulon	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate N-acetyltransferase (EC 2.3.1.35)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylglutamate kinase (EC 2.7.2.8)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine aminotransferase (EC 2.6.1.11)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate synthase (EC 6.3.4.5)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate lyase (EC 4.3.2.1)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted arginine ABC transporter, substrate-binding protein	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted arginine ABC transporter, permease protein	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted arginine ABC transporter, ATP-binding protein	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylglutamate synthase, alternative (EC 2.3.1.1)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylglutamate synthase (EC 2.3.1.1)	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted arginine uptake transporter	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, ATP-binding protein ArtP	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, periplasmic arginine-binding protein ArtI	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, permease protein ArtQ	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, permease protein ArtM	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, permease protein	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, ATP-binding protein	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine ABC transporter, substrate-binding protein	Arginine_HMP	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Diaminopimelate decarboxylase (EC 4.1.1.20)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate epimerase (EC 5.1.1.7)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartokinase (EC 2.7.2.4)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Lysine-specific permease	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted lysine transporter, NhaC family	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted lysine ABC transporter, lysine-binding protein LysX	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted lysine ABC transporter, permease component LysY	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted lysine ABC transporter, ATP-binding protein LysZ	Lysine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
ATP phosphoribosyltransferase (EC 2.4.2.17)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidinol dehydrogenase (EC 1.1.1.23)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ammonia-lyase (EC 4.3.1.3)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase (EC 3.1.3.15)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine permease YuiF	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine transport protein (permease)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Urocanate hydratase (EC 4.2.1.49)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Imidazolonepropionase (EC 3.5.2.7)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
His repressor	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase [alternative form] (EC 3.1.3.15)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ABC transporter, histidine-binding protein	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ABC transporter, permease protein	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
Histidine ABC transporter, ATP-binding protein	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase regulatory subunit, divergent variant (EC 2.4.2.17)	Histidine_HMP	Amino Acids and Derivatives	Histidine Metabolism
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate synthase (EC 4.2.3.4)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase I (EC 4.2.1.10)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase I (EC 2.7.1.71)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) alpha sub-homology division	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate synthase (EC 4.2.3.5)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
3-dehydroquinate dehydratase II (EC 4.2.1.10)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) beta sub-homology division	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Shikimate kinase III (EC 2.7.1.71)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)	Chorismate_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
RidA/YER057c/UK114 superfamily, group 1	COG2945	Metabolite damage and its repair or mitigation	
Alanine racemase (EC 5.1.1.1)	COG2945	Metabolite damage and its repair or mitigation	
Aspartate aminotransferase (EC 2.6.1.1)	COG2945	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7)	COG2945	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	COG2945	Metabolite damage and its repair or mitigation	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	COG2945	Metabolite damage and its repair or mitigation	
Aspartate carbamoyltransferase (EC 2.1.3.2)	COG2945	Metabolite damage and its repair or mitigation	
Dihydroorotase (EC 3.5.2.3)	COG2945	Metabolite damage and its repair or mitigation	
Orotate phosphoribosyltransferase (EC 2.4.2.10)	COG2945	Metabolite damage and its repair or mitigation	
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	COG2945	Metabolite damage and its repair or mitigation	
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	COG2945	Metabolite damage and its repair or mitigation	
N-acetylglutamate synthase (EC 2.3.1.1)	COG2945	Metabolite damage and its repair or mitigation	
Acetylglutamate kinase (EC 2.7.2.8)	COG2945	Metabolite damage and its repair or mitigation	
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	COG2945	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11)	COG2945	Metabolite damage and its repair or mitigation	
Ornithine carbamoyltransferase (EC 2.1.3.3)	COG2945	Metabolite damage and its repair or mitigation	
Argininosuccinate synthase (EC 6.3.4.5)	COG2945	Metabolite damage and its repair or mitigation	
Argininosuccinate lyase (EC 4.3.2.1)	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily protein	COG2945	Metabolite damage and its repair or mitigation	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	COG2945	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	COG2945	Metabolite damage and its repair or mitigation	
Cystathionine beta-lyase (EC 4.4.1.8)	COG2945	Metabolite damage and its repair or mitigation	
Carbamate kinase (EC 2.7.2.2)	COG2945	Metabolite damage and its repair or mitigation	
Acetylornithine deacetylase (EC 3.5.1.16)	COG2945	Metabolite damage and its repair or mitigation	
Arginine deiminase (EC 3.5.3.6)	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 5	COG2945	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	COG2945	Metabolite damage and its repair or mitigation	
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	COG2945	Metabolite damage and its repair or mitigation	
Probable L-amino-acid oxidase (EC 1.4.3.2)	COG2945	Metabolite damage and its repair or mitigation	
Threonine dehydratase, catabolic (EC 4.3.1.19)	COG2945	Metabolite damage and its repair or mitigation	
L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)	COG2945	Metabolite damage and its repair or mitigation	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	COG2945	Metabolite damage and its repair or mitigation	
L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16)	COG2945	Metabolite damage and its repair or mitigation	
D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-)	COG2945	Metabolite damage and its repair or mitigation	
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	COG2945	Metabolite damage and its repair or mitigation	
D-cysteine desulfhydrase (EC 4.4.1.15)	COG2945	Metabolite damage and its repair or mitigation	
Acetylornithine aminotransferase (EC 2.6.1.11) @ N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)	COG2945	Metabolite damage and its repair or mitigation	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	COG2945	Metabolite damage and its repair or mitigation	
COG2945 alpha/beta hydrolase	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 6	COG2945	Metabolite damage and its repair or mitigation	
D-serine ammonia-lyase (EC 4.3.1.18)	COG2945	Metabolite damage and its repair or mitigation	
Diaminopropionate ammonia-lyase (EC 4.3.1.15)	COG2945	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1)	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 3 tandem domains	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 4	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 3	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	COG2945	Metabolite damage and its repair or mitigation	
Tyrosine phenol-lyase (EC 4.1.99.2)	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 4 tandem domains	COG2945	Metabolite damage and its repair or mitigation	
RidA fragment or small ORF	COG2945	Metabolite damage and its repair or mitigation	
monooxygenase, putative	COG2945	Metabolite damage and its repair or mitigation	
3-hydroxy-D-aspartate aldolase (EC 4.1.3.41)	COG2945	Metabolite damage and its repair or mitigation	
Threonine dehydratase (EC 4.3.1.19)	COG2945	Metabolite damage and its repair or mitigation	
Threonine/serine dehydratases	COG2945	Metabolite damage and its repair or mitigation	
FAD oxidoreductase	COG2945	Metabolite damage and its repair or mitigation	
Tryptophanase (EC 4.1.99.1) in a prenylated indole derivative biosynthesis cluster	COG2945	Metabolite damage and its repair or mitigation	
RidA/YER057c/UK114 superfamily, 2 tandem domains	COG2945	Metabolite damage and its repair or mitigation	
Aspartate 1-decarboxylase (EC 4.1.1.11)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate--beta-alanine ligase (EC 6.3.2.1)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase (EC 2.7.1.24)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Ketol-acid reductoisomerase (EC 1.1.1.86)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
COG0385 sodium-dependent transporter	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
2-dehydropantoate 2-reductase (EC 1.1.1.169)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase (EC 2.7.1.33)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Omega amidase, Nit2 homolog (EC 3.5.1.3)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Substrate-specific component PanT of predicted pantothenate ECF transporter	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantetheine adenylyltransferase, type II eukaryotic (EC 2.7.7.3)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Dephospho-CoA kinase archaeal, predicted (EC 2.7.1.24)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantothenate:Na+ symporter (TC 2.A.21.1.1)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Pantoate kinase, archaeal (EC 2.7.1.-)	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Phosphopantothenate synthetase, archaeal	dcernst_CoA_Salvage2	Cofactors, Vitamins, Prosthetic Groups, Pigments	Coenzyme A
Aspartate aminotransferase (EC 2.6.1.1)	AdiR2	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	AdiR2	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	AdiR2	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	AdiR2	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	AdiR2	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	AdiR2	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	AdiR2	Experimental Subsystems	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	AdiR2	Experimental Subsystems	
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	AdiR2	Experimental Subsystems	
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	AdiR2	Experimental Subsystems	
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	AdiR2	Experimental Subsystems	
Transcriptional regulator, MarR family	AdiR2	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	AdiR2	Experimental Subsystems	
GCN5-related N-acetyltransferase	AdiR2	Experimental Subsystems	
Serine hydroxymethyltransferase (EC 2.1.2.1)	AdiR2	Experimental Subsystems	
Arginine deiminase (EC 3.5.3.6)	AdiR2	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	AdiR2	Experimental Subsystems	
Ornithine cyclodeaminase (EC 4.3.1.12)	AdiR2	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	AdiR2	Experimental Subsystems	
RidA/YER057c/UK114 superfamily protein	AdiR2	Experimental Subsystems	
Carbamate kinase (EC 2.7.2.2)	AdiR2	Experimental Subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	AdiR2	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	AdiR2	Experimental Subsystems	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	AdiR2	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	AdiR2	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	AdiR2	Experimental Subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	AdiR2	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	AdiR2	Experimental Subsystems	
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	AdiR2	Experimental Subsystems	
pyridoxal phosphate-dependent deaminase, putative	AdiR2	Experimental Subsystems	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	AdiR2	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	AdiR2	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	AdiR2	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	AdiR2	Experimental Subsystems	
Cyanate hydratase (EC 4.2.1.104)	AdiR2	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	AdiR2	Experimental Subsystems	
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	AdiR2	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	AdiR2	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	AdiR2	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	AdiR2	Experimental Subsystems	
Threonine dehydratase, catabolic (EC 4.3.1.19)	AdiR2	Experimental Subsystems	
Beta-ureidopropionase (EC 3.5.1.6)	AdiR2	Experimental Subsystems	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	AdiR2	Experimental Subsystems	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	AdiR2	Experimental Subsystems	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	AdiR2	Experimental Subsystems	
Type III PLP	AdiR2	Experimental Subsystems	
Opine oxidase subunit B	AdiR2	Experimental Subsystems	
Tryptophanase (EC 4.1.99.1)	AdiR2	Experimental Subsystems	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	AdiR2	Experimental Subsystems	
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)	AdiR2	Experimental Subsystems	
2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) / Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20)	AdiR2	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	AdiR2	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	AdiR2	Experimental Subsystems	
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	AdiR2	Experimental Subsystems	
Probable L-amino-acid oxidase (EC 1.4.3.2)	AdiR2	Experimental Subsystems	
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	AdiR2	Experimental Subsystems	
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	AdiR2	Experimental Subsystems	
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	AdiR2	Experimental Subsystems	
BH2577 unknown conserved protein in B. subtilis	AdiR2	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin aldolase (EC 4.1.2.25)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydropteroate synthase (EC 2.5.1.15)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate reductase (EC 1.5.1.3)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folylpolyglutamate synthase (EC 6.3.2.17)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydrofolate synthase (EC 6.3.2.12)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Substrate-specific component FolT of folate ECF transporter	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Aminodeoxychorismate lyase (EC 4.1.3.38)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Putative DHNTP pyrophosphatase	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
FolM Alternative dihydrofolate reductase 1	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative dihydrofolate reductase 3	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
GTP cyclohydrolase I (EC 3.5.4.16) type 2	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate pyrophosphohydolase type 2	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Alternative dihydrofolate reductase 2	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Dihydroneopterin triphosphate pyrophosphohydolase	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Related to Dihydropteroate synthase	Folate_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Folate and pterines
Anthranilate synthase, aminase component (EC 4.1.3.27)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase alpha chain (EC 4.2.1.20)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase beta chain (EC 4.2.1.20)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan synthase beta chain like (EC 4.2.1.20)	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Predicted ABC transporter for tryptophane, substrate-binding protein TrpX	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Predicted ABC transporter for tryptophane, permease protein TrpY	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Predicted ABC transporter for tryptophane, ATP-binding protein TrpZ	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Transcriptional repressor protein TrpR	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tryptophan-specific transport protein	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Putative tyrosine or tryptophane transporter MhsT	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Substrate-specific component TrpP of tryptophan ECF transporter	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Transcription attenuation protein MtrB	Tryptophan_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydrogenase (EC 1.3.1.12)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate dehydratase (EC 4.2.1.51)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Predicted tyrosine transporter, NhaC family	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase I (EC 5.4.99.5)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Arogenate dehydrogenase (EC 1.3.1.43)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Periplasmic chorismate mutase I precursor (EC 5.4.99.5)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Tyrosine-specific transport protein	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Aromatic amino acid aminotransferase gamma (EC 2.6.1.57)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Chorismate mutase II (EC 5.4.99.5)	Tyrosine_Phenylalanine_HMP	Amino Acids and Derivatives	Aromatic amino acids and derivatives
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Leucine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
2-isopropylmalate synthase (EC 2.3.3.13)	Leucine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Leucine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Leucine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Leucine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid transport system carrier protein	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Threonine dehydratase, catabolic (EC 4.3.1.19)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase large subunit (EC 2.2.1.6)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Acetolactate synthase small subunit (EC 2.2.1.6)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Ketol-acid reductoisomerase (EC 1.1.1.86)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Dihydroxy-acid dehydratase (EC 4.2.1.9)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
2-isopropylmalate synthase (EC 2.3.3.13)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Threonine dehydratase biosynthetic (EC 4.3.1.19)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
Threonine dehydratase (EC 4.3.1.19)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1)	Isoleucine_Valine_HMP	Amino Acids and Derivatives	Branched-chain amino acids
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Serine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase (EC 2.6.1.52)	Serine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine phosphatase (EC 3.1.3.3)	Serine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
Novel Phosphoserine phosphatase (EC 3.1.3.3)	Serine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase, putative (EC 2.6.1.52)	Serine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine acetyltransferase (EC 2.3.1.30)	Cysteine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase (EC 2.5.1.47)	Cysteine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-lyase (EC 4.4.1.1)	Cysteine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-synthase (EC 4.2.1.22)	Cysteine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase B (EC 2.5.1.47)	Cysteine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine dehydrogenase (EC 1.1.1.3)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-lyase (EC 4.4.1.8)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter ATP-binding protein	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter permease protein	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine ABC transporter substrate-binding protein	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
S-adenosylmethionine synthetase (EC 2.5.1.6)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine O-succinyltransferase (EC 2.3.1.46)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-lyase, type II (EC 4.4.1.8)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-synthase (EC 2.5.1.48)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine O-acetyltransferase (EC 2.3.1.31)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homocysteine S-methyltransferase (EC 2.1.1.10)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine synthase activation domain (EC 2.1.1.13)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Methionine transporter MetT	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-lyase PatB (EC 4.4.1.8)	Methionine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine dehydrogenase (EC 1.1.1.3)	Threonine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine kinase (EC 2.7.1.39)	Threonine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine synthase (EC 4.2.3.1)	Threonine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted functional analog of homoserine kinase (EC 2.7.1.-)	Threonine_HMP	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Glutamate 5-kinase (EC 2.7.2.11)	Proline_HMP	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Proline_HMP	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Proline_HMP	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	Proline_HMP	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type I (EC 6.3.1.2)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase, alpha subunit domain protein	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
glutamine synthetase family protein	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase family protein in hypothetical Actinobacterial gene cluster	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase (EC 6.3.1.2)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13)	Glutamine_Glutamate_HMP	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6)	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6)	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6)	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Aspartate aminotransferase (EC 2.6.1.1)	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Transcriptional regulator, GntR family domain	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Aspartate--ammonia ligase (EC 6.3.1.1)	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnB	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) YisO	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnH	Aspartate_Asparagine_HMP	Amino Acids and Derivatives	Glutamate, Aspartate, Asparagine HMP
Histidine ammonia-lyase (EC 4.3.1.3)	COG0523-Histidine	Miscellaneous	Plant-Prokaryote comparative genomics
Urocanate hydratase (EC 4.2.1.49)	COG0523-Histidine	Miscellaneous	Plant-Prokaryote comparative genomics
Imidazolonepropionase (EC 3.5.2.7)	COG0523-Histidine	Miscellaneous	Plant-Prokaryote comparative genomics
Formiminoglutamase (EC 3.5.3.8)	COG0523-Histidine	Miscellaneous	Plant-Prokaryote comparative genomics
GTP cyclohydrolase I (EC 3.5.4.16) type 2	COG0523-Histidine	Miscellaneous	Plant-Prokaryote comparative genomics
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	COG0523-Histidine	Miscellaneous	Plant-Prokaryote comparative genomics
L-rhamnose isomerase (EC 5.3.1.14)	Rhamnose_utilization_HGM	Experimental Subsystems	
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Rhamnose_utilization_HGM	Experimental Subsystems	
Rhamnulokinase (EC 2.7.1.5)	Rhamnose_utilization_HGM	Experimental Subsystems	
L-rhamnose mutarotase (EC 5.1.3.n3)	Rhamnose_utilization_HGM	Experimental Subsystems	
2'-5' RNA ligase	PrrC	Experimental Subsystems	
RloC protein, putative	PrrC	Experimental Subsystems	
Protein RtcB	PrrC	Experimental Subsystems	
Protein with similarity to RtcB	PrrC	Experimental Subsystems	
RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)	PrrC	Experimental Subsystems	
RNA-2',3'-PO4:RNA-5'-OH ligase	PrrC	Experimental Subsystems	
Translation-disabling ACNase RloC	PrrC	Experimental Subsystems	
Anticodon nuclease COG4694	PrrC	Experimental Subsystems	
RtcB-like protein	PrrC	Experimental Subsystems	
RNA ligase (EC 6.5.1.3) (Rnl1)	PrrC	Experimental Subsystems	
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	HMP_KDG	Carbohydrates	Monosaccharides
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	HMP_KDG	Carbohydrates	Monosaccharides
2-dehydro-3-deoxygluconokinase (EC 2.7.1.45)	HMP_KDG	Carbohydrates	Monosaccharides
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE	HMP_Maltodextrin	Carbohydrates	Monosaccharides
Maltose/maltodextrin ABC transporter, permease protein MalF	HMP_Maltodextrin	Carbohydrates	Monosaccharides
Maltose/maltodextrin ABC transporter, permease protein MalG	HMP_Maltodextrin	Carbohydrates	Monosaccharides
Neopullulanase (EC 3.2.1.135)	HMP_Maltodextrin	Carbohydrates	Monosaccharides
Glycogen phosphorylase (EC 2.4.1.1)	HMP_Maltodextrin	Carbohydrates	Monosaccharides
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	HMP_Maltodextrin	Carbohydrates	Monosaccharides
Oligo-1,6-glucosidase (EC 3.2.1.10)	HMP_Maltodextrin	Carbohydrates	Monosaccharides
Alpha-glucosidase (EC 3.2.1.20)	HMP_Maltodextrin	Carbohydrates	Monosaccharides
Pullulanase (EC 3.2.1.41)	HMP_Maltodextrin	Carbohydrates	Monosaccharides
N-acetylmannosamine kinase (EC 2.7.1.60)	HMP_Sialic_acids	Carbohydrates	Monosaccharides
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	HMP_Sialic_acids	Carbohydrates	Monosaccharides
N-acetylneuraminate lyase (EC 4.1.3.3)	HMP_Sialic_acids	Carbohydrates	Monosaccharides
Sialidase (EC 3.2.1.18)	HMP_Sialic_acids	Carbohydrates	Monosaccharides
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, N-acetylgalactosamine-specific IIC component	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, N-acetylgalactosamine-specific IID component	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, galactosamine-specific IIC component	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
PTS system, galactosamine-specific IID component	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
N-acetylgalactosamine-6-phosphate deacetylase	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Galactosamine-6-phosphate isomerase (galactosamine-6-phosphate deaminase) (EC 5.3.1.-)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Tagatose-6-phosphate kinase AgaZ (EC 2.7.1.144)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Beta-galactosidase 3	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IID component (EC 2.7.1.69)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IIA component (EC 2.7.1.69)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
Predicted PTS system, galactosamine-specific IIC component (EC 2.7.1.69)	HMP_N-Acetyl-Galactosamine_and_Galactosamine_Utilization	Carbohydrates	Aminosugars
UPF0301 protein YqgE	gh_DUF179	Experimental Subsystems	
Putative Holliday junction resolvase YqgF	gh_DUF179	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	gh_DUF179	Experimental Subsystems	
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	gh_DUF179	Experimental Subsystems	
tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	gh_DUF179	Experimental Subsystems	
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)	gh_DUF179	Experimental Subsystems	
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	gh_DUF179	Experimental Subsystems	
RNA polymerase sigma factor RpoS	gh_DUF179	Experimental Subsystems	
Ribulokinase (EC 2.7.1.16)	HMP_Arabinose	Carbohydrates	Monosaccharides
L-arabinose isomerase (EC 5.3.1.4)	HMP_Arabinose	Carbohydrates	Monosaccharides
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	HMP_Arabinose	Carbohydrates	Monosaccharides
Arabinose-proton symporter	HMP_Arabinose	Carbohydrates	Monosaccharides
Alpha-arabinosides ABC transport system, permease protein 2	HMP_Arabinose	Carbohydrates	Monosaccharides
Alpha-arabinosides ABC transport system, substrate-binding protein	HMP_Arabinose	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	HMP_Arabinose	Carbohydrates	Monosaccharides
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)	HMP_Arabinose	Carbohydrates	Monosaccharides
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)	HMP_Arabinose	Carbohydrates	Monosaccharides
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	HMP_Arabinose	Carbohydrates	Monosaccharides
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	HMP_Arabinose	Carbohydrates	Monosaccharides
L-arabinose transport system permease protein (TC 3.A.1.2.2)	HMP_Arabinose	Carbohydrates	Monosaccharides
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)	HMP_Arabinose	Carbohydrates	Monosaccharides
Alpha-arabinosides ABC transport system, permease protein 1	HMP_Arabinose	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein	HMP_Arabinose	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, permease protein 1	HMP_Arabinose	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, ATP-binding protein	HMP_Arabinose	Carbohydrates	Monosaccharides
Predicted L-arabinose ABC transport system, permease protein 2	HMP_Arabinose	Carbohydrates	Monosaccharides
Hyaluronate lyase precursor (EC 4.2.2.1)	HMP_Hyaluronate		
Unsaturated glucuronyl hydrolase (EC 3.2.1.-)	HMP_Hyaluronate		
PTS system, hyaluronate-oligosaccharide-specific IIC component (EC 2.7.1.69)	HMP_Hyaluronate		
PTS system, hyaluronate-oligosaccharide-specific IIB component (EC 2.7.1.69)	HMP_Hyaluronate		
PTS system, hyaluronate-oligosaccharide-specific IID component (EC 2.7.1.69)	HMP_Hyaluronate		
PTS system, hyaluronate-oligosaccharide-specific IIA component (EC 2.7.1.69)	HMP_Hyaluronate		
Oligohyaluronate lyase (EC 4.2.2.-)	HMP_Hyaluronate		
Various polyols ABC transporter, ATP-binding component	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Multiple polyol-specific dehydrogenase (EC 1.1.1.-)	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Xylitol dehydrogenase (EC 1.1.1.9)	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Various polyols ABC transporter, periplasmic substrate-binding protein	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Various polyols ABC transporter, permease component 1	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Various polyols ABC transporter, permease component 2	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Sorbitol dehydrogenase (EC 1.1.1.14)	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
D-arabinitol 4-dehydrogenase (EC 1.1.1.11)	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Ribitol/Xylitol/Arabitol transporter, MFS superfamily	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Xylitol ABC transporter, periplasmic substrate-binding protein	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Xylitol ABC transporter, permease component	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Xylitol ABC transporter, ATP-binding component	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Ribitol 2-dehydrogenase (EC 1.1.1.56)	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Predicted mannitol permease	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Glucitol/sorbitol-specific transport protein GutA	HMP_Sugar_Alcohols	Carbohydrates	Sugar alcohols
Ribokinase (EC 2.7.1.15)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose operon repressor	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17)	HMP_Ribose	Carbohydrates	Monosaccharides
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein	HMP_Ribose	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, permease 1 component	HMP_Ribose	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, permease 2 component	HMP_Ribose	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, ATP-binding component	HMP_Ribose	Carbohydrates	Monosaccharides
Predicted nucleoside ABC transporter, substrate-binding component	HMP_Ribose	Carbohydrates	Monosaccharides
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	HMP_Ribose	Carbohydrates	Monosaccharides
Predicted regulator of ribose utilization, LacI family	HMP_Ribose	Carbohydrates	Monosaccharides
Arginine deiminase (EC 3.5.3.6)	All_RidA_Proteins	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	All_RidA_Proteins	Experimental Subsystems	
Carbamate kinase (EC 2.7.2.2)	All_RidA_Proteins	Experimental Subsystems	
RidA/YER057c/UK114 superfamily protein	All_RidA_Proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	All_RidA_Proteins	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	All_RidA_Proteins	Experimental Subsystems	
Threonine synthase (EC 4.2.3.1)	All_RidA_Proteins	Experimental Subsystems	
Threonine dehydratase (EC 4.3.1.19)	All_RidA_Proteins	Experimental Subsystems	
Cysteine desulfurase (EC 2.8.1.7)	All_RidA_Proteins	Experimental Subsystems	
Aspartate aminotransferase (EC 2.6.1.1)	All_RidA_Proteins	Experimental Subsystems	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	All_RidA_Proteins	Experimental Subsystems	
Urease alpha subunit (EC 3.5.1.5)	All_RidA_Proteins	Experimental Subsystems	
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	All_RidA_Proteins	Experimental Subsystems	
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	All_RidA_Proteins	Experimental Subsystems	
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	All_RidA_Proteins	Experimental Subsystems	
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	All_RidA_Proteins	Experimental Subsystems	
GCN5-related N-acetyltransferase	All_RidA_Proteins	Experimental Subsystems	
Transcriptional regulator, MarR family	All_RidA_Proteins	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	All_RidA_Proteins	Experimental Subsystems	
Aspartate carbamoyltransferase (EC 2.1.3.2)	All_RidA_Proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8)	All_RidA_Proteins	Experimental Subsystems	
pyridoxal phosphate-dependent deaminase, putative	All_RidA_Proteins	Experimental Subsystems	
Threonine dehydratase biosynthetic (EC 4.3.1.19)	All_RidA_Proteins	Experimental Subsystems	
Putative cryptic D-serine deaminase (EC 4.3.1.18)	All_RidA_Proteins	Experimental Subsystems	
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	All_RidA_Proteins	Experimental Subsystems	
Glutamate--cysteine ligase (EC 6.3.2.2)	All_RidA_Proteins	Experimental Subsystems	
Glutathione synthetase (EC 6.3.2.3)	All_RidA_Proteins	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	All_RidA_Proteins	Experimental Subsystems	
Carbonic anhydrase (EC 4.2.1.1)	All_RidA_Proteins	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17)	All_RidA_Proteins	Experimental Subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	All_RidA_Proteins	Experimental Subsystems	
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	All_RidA_Proteins	Experimental Subsystems	
Cyanate hydratase (EC 4.2.1.104)	All_RidA_Proteins	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein	All_RidA_Proteins	Experimental Subsystems	
uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5	All_RidA_Proteins	Experimental Subsystems	
L-serine dehydratase, alpha subunit (EC 4.3.1.17)	All_RidA_Proteins	Experimental Subsystems	
L-serine dehydratase, beta subunit (EC 4.3.1.17)	All_RidA_Proteins	Experimental Subsystems	
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	All_RidA_Proteins	Experimental Subsystems	
D-cysteine desulfhydrase (EC 4.4.1.15)	All_RidA_Proteins	Experimental Subsystems	
Ornithine cyclodeaminase (EC 4.3.1.12)	All_RidA_Proteins	Experimental Subsystems	
BH2577 unknown conserved protein in B. subtilis	All_RidA_Proteins	Experimental Subsystems	
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	All_RidA_Proteins	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 6	All_RidA_Proteins	Experimental Subsystems	
Tryptophanase (EC 4.1.99.1)	All_RidA_Proteins	Experimental Subsystems	
Threonine dehydratase, catabolic (EC 4.3.1.19)	All_RidA_Proteins	Experimental Subsystems	
Type III PLP	All_RidA_Proteins	Experimental Subsystems	
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	All_RidA_Proteins	Experimental Subsystems	
1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)	All_RidA_Proteins	Experimental Subsystems	
Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17)	All_RidA_Proteins	Experimental Subsystems	
Beta-ureidopropionase (EC 3.5.1.6)	All_RidA_Proteins	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	All_RidA_Proteins	Experimental Subsystems	
Probable L-amino-acid oxidase (EC 1.4.3.2)	All_RidA_Proteins	Experimental Subsystems	
L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	All_RidA_Proteins	Experimental Subsystems	
Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD	All_RidA_Proteins	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 3	All_RidA_Proteins	Experimental Subsystems	
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) / Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)	All_RidA_Proteins	Experimental Subsystems	
Crotonyl-CoA carboxylase/reductase, ethylmalonyl-CoA producing	All_RidA_Proteins	Experimental Subsystems	
Ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming	All_RidA_Proteins	Experimental Subsystems	
Opine oxidase subunit B	All_RidA_Proteins	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 4	All_RidA_Proteins	Experimental Subsystems	
Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	All_RidA_Proteins	Experimental Subsystems	
N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	All_RidA_Proteins	Experimental Subsystems	
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein	All_RidA_Proteins	Experimental Subsystems	
Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)	All_RidA_Proteins	Experimental Subsystems	
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)	All_RidA_Proteins	Experimental Subsystems	
2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) / Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20)	All_RidA_Proteins	Experimental Subsystems	
FAD oxidoreductase	All_RidA_Proteins	Experimental Subsystems	
L-serine dehydratase 1 (EC 4.3.1.17)	All_RidA_Proteins	Experimental Subsystems	
Glycerol kinase (EC 2.7.1.30)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate transporter	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol uptake facilitator protein	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	HMP_Glycerol	Carbohydrates	Sugar alcohols
Alpha-glycerophosphate oxidase (EC 1.1.3.21)	HMP_Glycerol	Carbohydrates	Sugar alcohols
N-acetylglutamate synthase, alternative (EC 2.3.1.1)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylglutamate kinase (EC 2.7.2.8)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine aminotransferase (EC 2.6.1.11)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine deacetylase (EC 3.5.1.16)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-succinylornithine carbamoyltransferase (EC 2.1.3.11)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate synthase (EC 6.3.4.5)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate lyase (EC 4.3.2.1)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Arginine pathway regulatory protein ArgR, repressor of arg regulon	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Succinylornithine transaminase (EC 2.6.1.81)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Succinylglutamate desuccinylase (EC 3.5.1.96)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylornithine carbamoyltransferase (EC 2.1.3.9)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylglutamate synthase (EC 2.3.1.1)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate N-acetyltransferase (EC 2.3.1.35)	Arginine_Biosynthesis_in_Bacteroidetes	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	HMP_Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31)	HMP_Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	HMP_Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Phosphogluconate dehydratase (EC 4.2.1.12)	HMP_Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	HMP_Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type	HMP_Entner-Doudoroff_Pathway	Carbohydrates	Central carbohydrate metabolism
Acid and phagosome regulated protein AprA	Mycobacterium_tuberculosis_complex-specific_locus_aprABC,_adaptation_to_phagosome	Virulence, Disease and Defense	Invasion and intracellular resistance
PE-PGRS family protein AprC	Mycobacterium_tuberculosis_complex-specific_locus_aprABC,_adaptation_to_phagosome	Virulence, Disease and Defense	Invasion and intracellular resistance
Acid and phagosome regulated protein AprB	Mycobacterium_tuberculosis_complex-specific_locus_aprABC,_adaptation_to_phagosome	Virulence, Disease and Defense	Invasion and intracellular resistance
Ribose 5-phosphate isomerase A (EC 5.3.1.6)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transketolase (EC 2.2.1.1)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transketolase, C-terminal section (EC 2.2.1.1)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transketolase, N-terminal section (EC 2.2.1.1)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Transaldolase (EC 2.2.1.2)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconolactonase (EC 3.1.1.31)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Phosphogluconate dehydratase (EC 4.2.1.12)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	HMP_Pentose_phosphate_pathway	Carbohydrates	Central carbohydrate metabolism
Glucokinase (EC 2.7.1.2)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase class II (EC 2.7.1.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.12)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (EC 1.2.1.9)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal II (EC 5.3.1.9)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Hexokinase (EC 2.7.1.1)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Polyphosphate glucokinase (EC 2.7.1.63)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Predicted Fructose-bisphosphate aldolase (EC 4.1.2.13) in Geobacter	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase, archaeal class I (EC 4.1.2.13)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase, fungal/animal type (EC 2.7.1.11)	HMP_Glycolisys_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	HMP_Gluconate	Carbohydrates	Monosaccharides
Gluconate permease	HMP_Gluconate	Carbohydrates	Monosaccharides
Gluconokinase (EC 2.7.1.12)	HMP_Gluconate	Carbohydrates	Monosaccharides
Low-affinity gluconate/H+ symporter GntU	HMP_Gluconate	Carbohydrates	Monosaccharides
Gluconate transporter family protein	HMP_Gluconate	Carbohydrates	Monosaccharides
Alpha-galactosidase (EC 3.2.1.22)	HMP_Alpha-galactosides	Carbohydrates	Polysaccharides
Predicted galactosides ABC transporter, membrane-spanning permease protein AgaG	HMP_Alpha-galactosides	Carbohydrates	Polysaccharides
Predicted galactosides ABC transporter, substrate-binding protein AgaE	HMP_Alpha-galactosides	Carbohydrates	Polysaccharides
Predicted galactosides ABC transporter, membrane-spanning permease protein AgaF	HMP_Alpha-galactosides	Carbohydrates	Polysaccharides
Melibiose carrier protein, Na+/melibiose symporter	HMP_Alpha-galactosides	Carbohydrates	Polysaccharides
Beta-galactosidase (EC 3.2.1.23)	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
Lactose and galactose permease, GPH translocator family	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
ABC-type galactosides transport systems, periplasmic component	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
ABC-type galactosides transport systems, permease components	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
Lactose permease	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
PTS system, lactose-specific IIA component (EC 2.7.1.69)	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
PTS system, lactose-specific IIB component (EC 2.7.1.69)	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
PTS system, lactose-specific IIC component (EC 2.7.1.69)	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
6-phospho-beta-galactosidase (EC 3.2.1.85)	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
Beta-galactosidase large subunit (EC 3.2.1.23)	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
Beta-galactosidase small subunit (EC 3.2.1.23)	HMP_Beta-galactosides	Carbohydrates	Di- and oligosaccharides
Aldose 1-epimerase (EC 5.1.3.3)	HMP_Galactose_	Carbohydrates	Monosaccharides
Galactokinase (EC 2.7.1.6)	HMP_Galactose_	Carbohydrates	Monosaccharides
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	HMP_Galactose_	Carbohydrates	Monosaccharides
UDP-glucose 4-epimerase (EC 5.1.3.2)	HMP_Galactose_	Carbohydrates	Monosaccharides
Galactose-6-phosphate isomerase, LacA subunit (EC 5.3.1.26)	HMP_Galactose_	Carbohydrates	Monosaccharides
Galactose-6-phosphate isomerase, LacB subunit (EC 5.3.1.26)	HMP_Galactose_	Carbohydrates	Monosaccharides
Tagatose-6-phosphate kinase (EC 2.7.1.144)	HMP_Galactose_	Carbohydrates	Monosaccharides
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	HMP_Galactose_	Carbohydrates	Monosaccharides
PTS system, galactose-specific IIA component (EC 2.7.1.69)	HMP_Galactose_	Carbohydrates	Monosaccharides
PTS system, galactose-specific IIB component (EC 2.7.1.69)	HMP_Galactose_	Carbohydrates	Monosaccharides
PTS system, galactose-specific IIC component (EC 2.7.1.69)	HMP_Galactose_	Carbohydrates	Monosaccharides
Phosphoglucomutase (EC 5.4.2.2)	HMP_Galactose_	Carbohydrates	Monosaccharides
Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	HMP_Galactose_	Carbohydrates	Monosaccharides
Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	HMP_Galactose_	Carbohydrates	Monosaccharides
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	HMP_Galactose_	Carbohydrates	Monosaccharides
Beta-glucosidase (EC 3.2.1.21)	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
6-phospho-beta-glucosidase (EC 3.2.1.86)	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69) / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
PTS system, cellobiose-specific IIA component (EC 2.7.1.69)	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
PTS system, cellobiose-specific IIB component (EC 2.7.1.69)	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
PTS system, cellobiose-specific IIC component (EC 2.7.1.69)	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
Predicted ABC-type beta-glucoside transport system, permease component	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
Predicted ABC-type beta-glucoside transport system, periplasmic component	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
Cellobiose phosphorylase (EC 2.4.1.-)	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
Cellobiose phosphorylase (EC 2.4.1.20)	HMP_Beta-glucosides	Carbohydrates	Monosaccharides
Alkyl hydroperoxide reductase subunit C-like protein	Oxidative_stress	Stress Response	Oxidative stress
Catalase (EC 1.11.1.6)	Oxidative_stress	Stress Response	Oxidative stress
Fe2+/Zn2+ uptake regulation proteins	Oxidative_stress	Stress Response	Oxidative stress
Ferric uptake regulation protein FUR	Oxidative_stress	Stress Response	Oxidative stress
Ferroxidase (EC 1.16.3.1)	Oxidative_stress	Stress Response	Oxidative stress
Fumarate and nitrate reduction regulatory protein	Oxidative_stress	Stress Response	Oxidative stress
Heme oxygenase HemO, associated with heme uptake	Oxidative_stress	Stress Response	Oxidative stress
Hydrogen peroxide-inducible genes activator	Oxidative_stress	Stress Response	Oxidative stress
Iron-binding ferritin-like antioxidant protein	Oxidative_stress	Stress Response	Oxidative stress
Manganese superoxide dismutase (EC 1.15.1.1)	Oxidative_stress	Stress Response	Oxidative stress
Non-specific DNA-binding protein Dps	Oxidative_stress	Stress Response	Oxidative stress
Organic hydroperoxide resistance protein	Oxidative_stress	Stress Response	Oxidative stress
Organic hydroperoxide resistance transcriptional regulator	Oxidative_stress	Stress Response	Oxidative stress
Paraquat-inducible protein A	Oxidative_stress	Stress Response	Oxidative stress
Paraquat-inducible protein B	Oxidative_stress	Stress Response	Oxidative stress
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)	Oxidative_stress	Stress Response	Oxidative stress
Redox-sensitive transcriptional activator SoxR	Oxidative_stress	Stress Response	Oxidative stress
Superoxide dismutase [Fe] (EC 1.15.1.1)	Oxidative_stress	Stress Response	Oxidative stress
Zinc uptake regulation protein ZUR	Oxidative_stress	Stress Response	Oxidative stress
bacteriophytochrome heme oxygenase BphO	Oxidative_stress	Stress Response	Oxidative stress
transcriptional regulator, Crp/Fnr family	Oxidative_stress	Stress Response	Oxidative stress
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	Oxidative_stress	Stress Response	Oxidative stress
Superoxide dismutase [Mn] (EC 1.15.1.1)	Oxidative_stress	Stress Response	Oxidative stress
Probable peroxiredoxin (EC 1.11.1.15)	Oxidative_stress	Stress Response	Oxidative stress
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1)	Oxidative_stress	Stress Response	Oxidative stress
Transcriptional regulator, FUR family	Oxidative_stress	Stress Response	Oxidative stress
Peroxide stress regulator PerR, FUR family	Oxidative_stress	Stress Response	Oxidative stress
Rubrerythrin	Oxidative_stress	Stress Response	Oxidative stress
Transcriptional regulator, Crp/Fnr family	Oxidative_stress	Stress Response	Oxidative stress
Peroxidase (EC 1.11.1.7)	Oxidative_stress	Stress Response	Oxidative stress
Superoxide reductase (EC 1.15.1.2)	Oxidative_stress	Stress Response	Oxidative stress
Manganese catalase (EC 1.11.1.6)	Oxidative_stress	Stress Response	Oxidative stress
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	Oxidative_stress	Stress Response	Oxidative stress
transcriptional regulator, Fur family	Oxidative_stress	Stress Response	Oxidative stress
Nitrite-sensitive transcriptional repressor NsrR	Oxidative_stress	Stress Response	Oxidative stress
NnrS protein involved in response to NO	Oxidative_stress	Stress Response	Oxidative stress
Ferric uptake regulation protein	Oxidative_stress	Stress Response	Oxidative stress
Peroxide stress regulator	Oxidative_stress	Stress Response	Oxidative stress
Iron-responsive regulator Irr	Oxidative_stress	Stress Response	Oxidative stress
Stress response diiron-containing protein YciF	Oxidative_stress	Stress Response	Oxidative stress
Regulatory protein SoxS	Oxidative_stress	Stress Response	Oxidative stress
Mn-containing catalase	Oxidative_stress	Stress Response	Oxidative stress
Superoxide dismutase (EC 1.15.1.1)	Oxidative_stress	Stress Response	Oxidative stress
Metallothionein	Oxidative_stress	Stress Response	Oxidative stress
Thioredoxin peroxidase 1 (EC 1.6.4.-)	Oxidative_stress	Stress Response	Oxidative stress
Peroxidase/catalase HPI (EC 1.11.1.6)	Oxidative_stress	Stress Response	Oxidative stress
superoxide dismutase [Fe-Zn] (EC 1.15.1.1)	Oxidative_stress	Stress Response	Oxidative stress
DNA binding protein starved cells-like peroxide resistance protein	Oxidative_stress	Stress Response	Oxidative stress
Orotate phosphoribosyltransferase (EC 2.4.2.10)	Nudix_in_NAD	Experimental Subsystems	
Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Nudix_in_NAD	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	Nudix_in_NAD	Experimental Subsystems	
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Nudix_in_NAD	Experimental Subsystems	
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Nudix_in_NAD	Experimental Subsystems	
Purine nucleoside phosphorylase (EC 2.4.2.1)	Nudix_in_NAD	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	Nudix_in_NAD	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Nudix_in_NAD	Experimental Subsystems	
NAD kinase (EC 2.7.1.23)	Nudix_in_NAD	Experimental Subsystems	
Nicotinamidase (EC 3.5.1.19)	Nudix_in_NAD	Experimental Subsystems	
Niacin transporter NiaP	Nudix_in_NAD	Experimental Subsystems	
Adenine phosphoribosyltransferase (EC 2.4.2.7)	Nudix_in_NAD	Experimental Subsystems	
NADH pyrophosphatase (EC 3.6.1.22)	Nudix_in_NAD	Experimental Subsystems	
Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)	Nudix_in_NAD	Experimental Subsystems	
Ribose 1,5-bisphosphate phosphokinase PhnN (EC 2.7.4.23)	Nudix_in_NAD	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	Nudix_in_NAD	Experimental Subsystems	
Nudix-related transcriptional regulator NrtR	Nudix_in_NAD	Experimental Subsystems	
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	Nudix_in_NAD	Experimental Subsystems	
Ribose-phosphate pyrophosphokinase, possible alternative form	Nudix_in_NAD	Experimental Subsystems	
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	Heme_O_and_Heme_A_biosynthesis	Respiration	
Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA	Heme_O_and_Heme_A_biosynthesis	Respiration	
Hypothetical protein DUF420	Heme_O_and_Heme_A_biosynthesis	Respiration	
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Heme_O_and_Heme_A_biosynthesis	Respiration	
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Heme_O_and_Heme_A_biosynthesis	Respiration	
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Heme_O_and_Heme_A_biosynthesis	Respiration	
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Heme_O_and_Heme_A_biosynthesis	Respiration	
1-phosphofructokinase (EC 2.7.1.56)	HMP_Fructose	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIA component (EC 2.7.1.69)	HMP_Fructose	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIC component (EC 2.7.1.69)	HMP_Fructose	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIB component (EC 2.7.1.69)	HMP_Fructose	Carbohydrates	Monosaccharides
Fructokinase (EC 2.7.1.4)	HMP_Fructose	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIA component	HMP_Fructose	Carbohydrates	Monosaccharides
PTS system, fructose-specific IIC component	HMP_Fructose	Carbohydrates	Monosaccharides
Predicted fructose transporter	HMP_Fructose	Carbohydrates	Monosaccharides
Fructokinase (EC 2.7.1.4)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
PTS system, sucrose-specific IIA component (EC 2.7.1.69)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
PTS system, sucrose-specific IIB component (EC 2.7.1.69)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
PTS system, sucrose-specific IIC component (EC 2.7.1.69)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Sucrose phosphorylase (EC 2.4.1.7)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Sucrose permease, major facilitator superfamily	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Beta-fructosidase (EC 3.2.1.26)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Predicted fructosides ABC transporter, permease protein BfrE	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Predicted fructosides ABC transporter, permease protein BfrG	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Predicted fructosides ABC transporter, substrate-binding protein BfrF	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Amylosucrase (EC 2.4.1.4)	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Predicted fructosides ABC transporter, ATPase protein BfrH	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Predicted fructosides ABC transporter, substrate-binding protein	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Predicted fructosides ABC transporter, ATP-binding protein	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Predicted fructosides ABC transporter, permease protein	HMP_Sucrose	Carbohydrates	Di- and oligosaccharides
Alpha-L-fucosidase (EC 3.2.1.51)	HMP_Fucose	Carbohydrates	Monosaccharides
L-fuculokinase (EC 2.7.1.51)	HMP_Fucose	Carbohydrates	Monosaccharides
L-fucose isomerase (EC 5.3.1.25)	HMP_Fucose	Carbohydrates	Monosaccharides
L-fuculose phosphate aldolase (EC 4.1.2.17)	HMP_Fucose	Carbohydrates	Monosaccharides
Fucose ABC transport system, permease protein, predicted	HMP_Fucose	Carbohydrates	Monosaccharides
L-fucose mutarotase (EC 5.1.3.29)	HMP_Fucose	Carbohydrates	Monosaccharides
Fucose permease	HMP_Fucose	Carbohydrates	Monosaccharides
Fucose ABC transport system, substrate-binding protein, predicted	HMP_Fucose	Carbohydrates	Monosaccharides
Fucose ABC transport system, ATP-binding protein, predicted	HMP_Fucose	Carbohydrates	Monosaccharides
L-fuconolactone hydrolase	HMP_Fucose	Carbohydrates	Monosaccharides
2-keto-3-deoxy-L-fuconate dehydrogenase	HMP_Fucose	Carbohydrates	Monosaccharides
L-fuco-beta-pyranose dehydrogenase, type 2 (EC 1.1.1.122)	HMP_Fucose	Carbohydrates	Monosaccharides
L-fuconate dehydratase (EC 4.2.1.68)	HMP_Fucose	Carbohydrates	Monosaccharides
Predicted 2,4-diketo-3-deoxy-L-fuconate hydrolase, DHDPS family	HMP_Fucose	Carbohydrates	Monosaccharides
Glucokinase (EC 2.7.1.2)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase class II (EC 2.7.1.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (EC 1.2.1.9)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Pyruvate-utilizing enzyme, similar to phosphoenolpyruvate synthase	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal II (EC 5.3.1.9)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Hexokinase (EC 2.7.1.1)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Polyphosphate glucokinase (EC 2.7.1.63)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Putative phosphoenolpyruvate synthase/pyruvate phosphate dikinase, N-terminal domain	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Putative phosphoenolpyruvate synthase/pyruvate phosphate dikinase, C-terminal domain	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Predicted Fructose-bisphosphate aldolase (EC 4.1.2.13) in Geobacter	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase, archaeal class I (EC 4.1.2.13)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase, fungal/animal type (EC 2.7.1.11)	Glycolysis_and_Gluconeogenesis	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
ADP-dependent glucokinase (EC 2.7.1.147)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
ADP-dependent phosphofructokinase (EC 2.7.1.146)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Enolase (EC 4.2.1.11)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase/bisphosphatase ancestral bifunctional (EC 4.1.2.13) (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Fructose-bisphosphate aldolase, archaeal class I (EC 4.1.2.13)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal (EC 5.3.1.9)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Glyceraldehyde-3-phosphate: ferredoxin oxidoreductase (EC 1.2.7.6)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate synthase (EC 2.7.9.2)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate kinase (EC 2.7.2.3)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Pyruvate kinase (EC 2.7.1.40)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Triosephosphate isomerase (EC 5.3.1.1)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase (EC 5.3.1.9)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Predicted functional analog of homoserine kinase (EC 2.7.1.-)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Glucose 1-dehydrogenase (EC 1.1.1.47)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Glucose-6-phosphate isomerase, archaeal II (EC 5.3.1.9)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Phosphoglycerate mutase (EC 5.4.2.11)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Hexokinase (EC 2.7.1.1)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Pyruvate,phosphate dikinase (EC 2.7.9.1)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
6-phosphofructokinase (EC 2.7.1.11)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	Carbohydrates	Central carbohydrate metabolism
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	HMP_Unsaturated_glucuronate_	Carbohydrates	Monosaccharides
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	HMP_Unsaturated_glucuronate_	Carbohydrates	Monosaccharides
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	HMP_Unsaturated_glucuronate_	Carbohydrates	Monosaccharides
2-dehydro-3-deoxygluconokinase (EC 2.7.1.45)	HMP_Unsaturated_glucuronate_	Carbohydrates	Monosaccharides
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	HMP_Unsaturated_glucuronate_	Carbohydrates	Monosaccharides
predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	HMP_Unsaturated_glucuronate_	Carbohydrates	Monosaccharides
Mannonate dehydratase (EC 4.2.1.8)	HMP_Hexuronates	Carbohydrates	Monosaccharides
Unsaturated glucuronyl hydrolase (EC 3.2.1.-)	HMP_Hexuronates	Carbohydrates	Monosaccharides
Beta-glucuronidase (EC 3.2.1.31)	HMP_Hexuronates	Carbohydrates	Monosaccharides
D-mannonate oxidoreductase (EC 1.1.1.57)	HMP_Hexuronates	Carbohydrates	Monosaccharides
Uronate isomerase (EC 5.3.1.12)	HMP_Hexuronates	Carbohydrates	Monosaccharides
Altronate oxidoreductase (EC 1.1.1.58)	HMP_Hexuronates	Carbohydrates	Monosaccharides
Altronate dehydratase (EC 4.2.1.7)	HMP_Hexuronates	Carbohydrates	Monosaccharides
Hexuronate transporter	HMP_Hexuronates	Carbohydrates	Monosaccharides
TRAP-type hexuronate transport system, periplasmic component	HMP_Hexuronates	Carbohydrates	Monosaccharides
TRAP-type hexuronate transport system, small permease component	HMP_Hexuronates	Carbohydrates	Monosaccharides
TRAP-type hexuronate transport system, large permease component	HMP_Hexuronates	Carbohydrates	Monosaccharides
Glucuronide permease	HMP_Hexuronates	Carbohydrates	Monosaccharides
Rhamnogalacturonides degradation protein RhiN	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
Rhamnulokinase (EC 2.7.1.5)	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
L-rhamnose isomerase (EC 5.3.1.14)	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
L-rhamnose-proton symporter	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
L-rhamnose mutarotase	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
L-rhamnose mutarotase (EC 5.1.3.n3)	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	HMP_Rhamnogalacturonan	Carbohydrates	Monosaccharides
Xylulose kinase (EC 2.7.1.17)	HMP_Xylose	Carbohydrates	Monosaccharides
Xylose isomerase (EC 5.3.1.5)	HMP_Xylose	Carbohydrates	Monosaccharides
Alpha-xylosidase (EC 3.2.1.-)	HMP_Xylose	Carbohydrates	Monosaccharides
D-xylose proton-symporter XylT	HMP_Xylose	Carbohydrates	Monosaccharides
Beta-xylosidase (EC 3.2.1.37)	HMP_Xylose	Carbohydrates	Monosaccharides
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)	HMP_Xylose	Carbohydrates	Monosaccharides
D-xylose proton-symporter XylE	HMP_Xylose	Carbohydrates	Monosaccharides
Xyloside transporter XynT	HMP_Xylose	Carbohydrates	Monosaccharides
predicted xylose isomerase	HMP_Xylose	Carbohydrates	Monosaccharides
Xylose ABC transporter, periplasmic xylose-binding protein XylF	HMP_Xylose	Carbohydrates	Monosaccharides
D-xylose transport ATP-binding protein XylG	HMP_Xylose	Carbohydrates	Monosaccharides
Xylose ABC transporter, permease protein XylH	HMP_Xylose	Carbohydrates	Monosaccharides
Xylose ABC transporter, substrate-binding component	HMP_Xylose	Carbohydrates	Monosaccharides
Xylose ABC transporter, permease component	HMP_Xylose	Carbohydrates	Monosaccharides
Xylose ABC transporter, ATP-binding component	HMP_Xylose	Carbohydrates	Monosaccharides
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
Beta-hexosaminidase (EC 3.2.1.52)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
Chitinase (EC 3.2.1.14)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
Predicted N-acetyl-glucosamine kinase 2, ROK family (EC 2.7.1.59)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
N-Acetyl-D-glucosamine permease 2, possible	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
Alpha-N-acetylglucosaminidase (EC 3.2.1.50)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
PTS system, N-acetylglucosamine-specific IIA component	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
PTS system, N,N'-diacetylchitobiose-specific IIB component (EC 2.7.1.69)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
PTS system, N,N'-diacetylchitobiose-specific IIC component	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
PTS system, N,N'-diacetylchitobiose-specific IIA component	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
N-acetyl glucosamine transporter, NagP	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
Chitodextrinase precursor (EC 3.2.1.14)	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
Predicted chitobiose ABC transport system II, sugar-binding protein	HMP_N-Acetylglucosamine	Carbohydrates	Aminosugars
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Electron transfer flavoprotein, alpha subunit	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Electron transfer flavoprotein, beta subunit	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Butyryl-CoA:acetate CoA-transferase (EC 2.8.3.8)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
NADH-dependent butanol dehydrogenase A (EC 1.1.1.-)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Electron bifurcating butyryl-CoA dehydrogenase, electron transfer flavoprotein alpha	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Electron bifurcating butyryl-CoA dehydrogenase, electron transfer flavoprotein beta	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Glutaconyl-CoA decarboxylase subunit gamma (EC 4.1.1.70) (Biotin carrier)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
4-hydroxybutanoyl-CoA dehydratase (EC 4.2.1.-)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
4-hydroxybutyrate:acetyl-CoA CoA transferase (EC 2.3.1.-)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
NAD-dependent 4-hydroxybutyrate dehydrogenase (EC 1.1.1.61)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Glutaconate CoA-transferase subunit A (EC 2.8.3.12)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Glutaconate CoA-transferase subunit B (EC 2.8.3.12)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Glutaconyl-CoA decarboxylase alpha chain (EC 4.1.1.70)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
Glutaconyl-CoA decarboxylase beta chain (EC 4.1.1.70)	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
2-hydroxyglutaryl-CoA dehydratase, D-component HgdA	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
2-hydroxyglutaryl-CoA dehydratase, D-component HgdB	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
2-hydroxyglutaryl-CoA dehydratase activator, A-component	HMP_Butyrate_synthesis	Carbohydrates	Fermentation
L-rhamnose isomerase (EC 5.3.1.14)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Rhamnulokinase (EC 2.7.1.5)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-rhamnose mutarotase	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-rhamnose-proton symporter	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-rhamnose operon transcriptional activator RhaR	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-rhamnose operon regulatory protein RhaS	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Lactaldehyde reductase (EC 1.1.1.77)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-rhamnonate dehydratase (EC 4.2.1.90)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-lactate dehydrogenase (EC 1.1.2.3)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Aldehyde dehydrogenase A (EC 1.2.1.22)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Rhamnogalacturonides degradation protein RhiN	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of rhamnose utilization, DeoR family	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster	L-rhamnose_utilization	Carbohydrates	Monosaccharides
rhamnogalacturonan acetylesterase	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnose oligosaccharide ABC transport system, permease component	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnose oligosaccharide ABC transport system, permease component 2	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Alfa-L-rhamnosidase (EC 3.2.1.40)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of rhamnose utilization, AraC family	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted alpha-L-rhamnosidase	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted L-rhamnose ABC transporter, ATP-binding component	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted L-rhamnose permease RhaY	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Pedicted L-rhamnose permease, NCS1 Family	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted L-rhamnose ABC transporter, substrate-binding component	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted L-rhamnose ABC transporter, transmembrane component 1	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted L-rhamnose ABC transporter, transmembrane component 2	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of rhamnose utilization, LacI family	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnose oligosaccharide ABC transporter, permease component 1	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnose oligosaccharide ABC transporter, permease component 2	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted L-rhamnose mutarotase	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Putative beta-glucuronidase	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Alternative L-rhamnose isomerase (EC 5.3.1.14)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Glycoside hydrolase family 2, sugar binding	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Putative unsaturated glucuronyl hydrolase	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
L-rhamno-gamma-lactonase (EC 3.1.1.65)	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Rhamnogalacturonide transporter RhiT	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of rhamnose utilization, GntR family	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Transcriptional regulator of rhamnose utilization, LysR family	L-rhamnose_utilization	Carbohydrates	Monosaccharides
Ethanolamine utilization protein similar to PduL	HMP_propionate_synthesis	Carbohydrates	Fermentation
Lactaldehyde reductase (EC 1.1.1.77)	HMP_propionate_synthesis	Carbohydrates	Fermentation
CoA-acylating propionaldehyde dehydrogenase	HMP_propionate_synthesis	Carbohydrates	Fermentation
Propanol dehydrogenase	HMP_propionate_synthesis	Carbohydrates	Fermentation
Propanediol dehydratase large subunit (EC 4.2.1.28)	HMP_propionate_synthesis	Carbohydrates	Fermentation
Propanediol dehydratase medium subunit (EC 4.2.1.28)	HMP_propionate_synthesis	Carbohydrates	Fermentation
Propanediol dehydratase small subunit (EC 4.2.1.28)	HMP_propionate_synthesis	Carbohydrates	Fermentation
Propanediol dehydratase reactivation factor large subunit	HMP_propionate_synthesis	Carbohydrates	Fermentation
Acetate kinase (EC 2.7.2.1)	HMP_lactate_fermentation	Carbohydrates	Fermentation
Phosphate acetyltransferase (EC 2.3.1.8)	HMP_lactate_fermentation	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase (EC 1.2.1.10)	HMP_lactate_fermentation	Carbohydrates	Fermentation
Alcohol dehydrogenase (EC 1.1.1.1)	HMP_lactate_fermentation	Carbohydrates	Fermentation
L-lactate dehydrogenase (EC 1.1.1.27)	HMP_lactate_fermentation	Carbohydrates	Fermentation
Pyruvate formate-lyase (EC 2.3.1.54)	HMP_lactate_fermentation	Carbohydrates	Fermentation
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	HMP_lactate_fermentation	Carbohydrates	Fermentation
Formate/nitrite family of transporters	HMP_lactate_fermentation	Carbohydrates	Fermentation
Formate efflux transporter (TC 2.A.44 family)	HMP_lactate_fermentation	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol	HMP_lactate_fermentation	Carbohydrates	Fermentation
Acetaldehyde dehydrogenase, ethanolamine utilization cluster	HMP_lactate_fermentation	Carbohydrates	Fermentation
PTS system, glucose-specific IIC component / PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIA component	HMP_Glucose	Carbohydrates	Monosaccharides
PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)	HMP_Glucose	Carbohydrates	Monosaccharides
D-glucose proton-symporter	HMP_Glucose	Carbohydrates	Monosaccharides
Glycerate kinase (EC 2.7.1.31)	HMP_Glycerate	Experimental Subsystems	Glycerate
D-glycerate transporter (predicted)	HMP_Glycerate	Experimental Subsystems	Glycerate
Acetaldehyde dehydrogenase, ethanolamine utilization cluster	HMP_Ethanolamine	Experimental Subsystems	
Ethanolamine utilization protein EutA	HMP_Ethanolamine	Experimental Subsystems	
Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	HMP_Ethanolamine	Experimental Subsystems	
Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	HMP_Ethanolamine	Experimental Subsystems	
Ethanolamine utilization polyhedral-body-like protein EutL	HMP_Ethanolamine	Experimental Subsystems	
Aconitate hydratase (EC 4.2.1.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate synthase (si) (EC 2.3.3.1)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Aconitate hydratase 2 (EC 4.2.1.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate lyase alpha chain (EC 4.1.3.6)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate lyase beta chain (EC 4.1.3.6)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Malate dehydrogenase (EC 1.1.1.37)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
NAD-dependent malic enzyme (EC 1.1.1.38)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Malate synthase (EC 2.3.3.9)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Isocitrate lyase (EC 4.1.3.1)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
NADP-dependent malic enzyme (EC 1.1.1.40)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Predicted eukaryotic-type aconitate hydratase (EC 4.2.1.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)	HMP_TCA_Cycle	Carbohydrates	Central carbohydrate metabolism
L-lactate dehydrogenase (EC 1.1.2.3)	HMP_Lactate	Carbohydrates	Organic acids
D-Lactate dehydrogenase (EC 1.1.2.5)	HMP_Lactate	Carbohydrates	Organic acids
L-lactate permease	HMP_Lactate	Carbohydrates	Organic acids
D-lactate dehydrogenase (EC 1.1.1.28)	HMP_Lactate	Carbohydrates	Organic acids
Staphylokinase	Demo:_Staphylococcus_virulence_factors	Experimental Subsystems	
Protein A, von Willebrand factor binding protein Spa	Demo:_Staphylococcus_virulence_factors	Experimental Subsystems	
Staphylococcus enterotoxin A	Demo:_Staphylococcus_virulence_factors	Experimental Subsystems	
NMT1/THI5 like domain protein	THI5p	Experimental Subsystems	
Hydroxymethylpyrimidine synthesis protein THI5	THI5p	Experimental Subsystems	
L-aspartate oxidase (EC 1.4.3.16)	Guillaume_NAD	Experimental Subsystems	
Quinolinate synthetase (EC 2.5.1.72)	Guillaume_NAD	Experimental Subsystems	
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Guillaume_NAD	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Guillaume_NAD	Experimental Subsystems	
NAD synthetase (EC 6.3.1.5)	Guillaume_NAD	Experimental Subsystems	
Glutamine amidotransferase chain of NAD synthetase	Guillaume_NAD	Experimental Subsystems	
NAD kinase (EC 2.7.1.23)	Guillaume_NAD	Experimental Subsystems	
Nicotinamidase (EC 3.5.1.19)	Guillaume_NAD	Experimental Subsystems	
ADP-ribose pyrophosphatase (EC 3.6.1.13)	Guillaume_NAD	Experimental Subsystems	
NAD-dependent protein deacetylase of SIR2 family	Guillaume_NAD	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), iron-sulfur binding subunit	Guillaume_NAD	Experimental Subsystems	
Kynurenine formamidase, bacterial (EC 3.5.1.9)	Guillaume_NAD	Experimental Subsystems	
L-Aspartate dehydrogenase (EC 1.4.1.21)	Guillaume_NAD	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1)	Guillaume_NAD	Experimental Subsystems	
Tryptophan 2,3-dioxygenase (EC 1.13.11.11)	Guillaume_NAD	Experimental Subsystems	
Kynureninase (EC 3.7.1.3)	Guillaume_NAD	Experimental Subsystems	
Ribosyl nicotinamide transporter, PnuC-like	Guillaume_NAD	Experimental Subsystems	
Hydrolase (HAD superfamily), YqeK	Guillaume_NAD	Experimental Subsystems	
Nicotinamidase/isochorismatase family protein	Guillaume_NAD	Experimental Subsystems	
Nicotinamidase family protein YcaC	Guillaume_NAD	Experimental Subsystems	
N-Ribosylnicotinamide phosphorylase (EC 2.4.2.1)	Guillaume_NAD	Experimental Subsystems	
Niacin transporter NiaP	Guillaume_NAD	Experimental Subsystems	
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	Guillaume_NAD	Experimental Subsystems	
ATPase component of general energizing module of ECF transporters	Guillaume_NAD	Experimental Subsystems	
Transmembrane component of general energizing module of ECF transporters	Guillaume_NAD	Experimental Subsystems	
Transcriptional repressor for NAD biosynthesis in gram-positives	Guillaume_NAD	Experimental Subsystems	
Predicted N-ribosylNicotinamide CRP-like regulator	Guillaume_NAD	Experimental Subsystems	
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	Guillaume_NAD	Experimental Subsystems	
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	Guillaume_NAD	Experimental Subsystems	
DNA ligase (EC 6.5.1.2)	Guillaume_NAD	Experimental Subsystems	
Nudix-related transcriptional regulator NrtR	Guillaume_NAD	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1)	Guillaume_NAD	Experimental Subsystems	
Ribosylnicotinamide kinase (EC 2.7.1.22)	Guillaume_NAD	Experimental Subsystems	
Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)	Guillaume_NAD	Experimental Subsystems	
NadR transcriptional regulator	Guillaume_NAD	Experimental Subsystems	
NMN phosphatase (EC 3.1.3.5)	Guillaume_NAD	Experimental Subsystems	
Uncharacterized protein COG3236	Guillaume_NAD	Experimental Subsystems	
Anaerobic selenate reductase protein YnfG	Guillaume_NAD	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Guillaume_NAD	Experimental Subsystems	
POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR	Guillaume_NAD	Experimental Subsystems	
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)	Guillaume_NAD	Experimental Subsystems	
Ribosomal silencing factor RsfA (former Iojap)	Guillaume_NAD	Experimental Subsystems	
LSU m3Psi1915 methyltransferase RlmH	Guillaume_NAD	Experimental Subsystems	
C-terminal domain of CinA type S	Guillaume_NAD	Experimental Subsystems	
Amidases related to nicotinamidase	Guillaume_NAD	Experimental Subsystems	
Substrate-specific component NiaX of predicted niacin ECF transporter	Guillaume_NAD	Experimental Subsystems	
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Guillaume_NAD	Experimental Subsystems	
Kynurenine 3-monooxygenase (EC 1.14.13.9)	Guillaume_NAD	Experimental Subsystems	
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)	Guillaume_NAD	Experimental Subsystems	
Nicotine adenine dinucleotide glycohydrolase (NADGH) (EC 3.2.2.5)	Guillaume_NAD	Experimental Subsystems	
C-terminal domain of CinA type E	Guillaume_NAD	Experimental Subsystems	
Indoleamine 2,3-dioxygenase (EC 1.13.11.52)	Guillaume_NAD	Experimental Subsystems	
DNA ligase (EC 6.5.1.2), LigB	Guillaume_NAD	Experimental Subsystems	
C-terminal domain of CinA paralog, YdeJ	Guillaume_NAD	Experimental Subsystems	
NrtR-regulated hypothetical NrtY, PpnK-type ATP-NAD kinase domain	Guillaume_NAD	Experimental Subsystems	
NrtR-regulated hypothetical NrtX, Band 7 protein domain	Guillaume_NAD	Experimental Subsystems	
NMN 5'-nucleotidase, extracellular (EC 3.1.3.5)	Guillaume_NAD	Experimental Subsystems	
Mono(ADP-ribosyl)transferase SpvB (EC 2.4.2.31)	Guillaume_NAD	Experimental Subsystems	
Kynurenine formamidase (EC 3.5.1.9)	Guillaume_NAD	Experimental Subsystems	
NMN synthetase (EC 6.3.1.-)	Guillaume_NAD	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase, NadM family (EC 2.7.7.18)	Guillaume_NAD	Experimental Subsystems	
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22)	Guillaume_NAD	Experimental Subsystems	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family	Guillaume_NAD	Experimental Subsystems	
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), eukaryotic PNAT family	Guillaume_NAD	Experimental Subsystems	
Nicotinamide N-methyltransferase (EC 2.1.1.1)	Guillaume_NAD	Experimental Subsystems	
Kynurenine formamidase, yeast-type BNA7 (EC 3.5.1.9)	Guillaume_NAD	Experimental Subsystems	
Niacin transporter in yeast, DAL5 family	Guillaume_NAD	Experimental Subsystems	
C-terminal domain of CinA type S homolog	Guillaume_NAD	Experimental Subsystems	
Hydroxymethylpyrimidine synthesis protein THI5	NMT1/THI5_eubacteria		
Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	GB_Experimental_Test	Experimental Subsystems	
Nicotinamidase family protein YcaC	GB_Experimental_Test	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), iron-sulfur binding subunit	GB_Experimental_Test	Experimental Subsystems	
Fe-S-cluster-containing hydrogenase components 1	GB_Experimental_Test	Experimental Subsystems	
Sulfite reduction-associated complex DsrMKJOP iron-sulfur protein DsrO (=HmeA)	GB_Experimental_Test	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	GB_Experimental_Test	Experimental Subsystems	
Predicted anaerobic reductase, iron-sulfur binding	GB_Experimental_Test	Experimental Subsystems	
Anaerobic selenate reductase protein YnfG	GB_Experimental_Test	Experimental Subsystems	
Respiratory arsentate reductase, FeS subunit (ArrB)	GB_Experimental_Test	Experimental Subsystems	
Diguanylate cyclase	GNAT_nitrilase_fustion	Experimental Subsystems	
Agmatinase (EC 3.5.3.11)	GNAT_nitrilase_fustion	Experimental Subsystems	
nitrilase (GNAT associated)	GNAT_nitrilase_fustion	Experimental Subsystems	
GNAT (nitrilase associated)	GNAT_nitrilase_fustion	Experimental Subsystems	
GNAT 2 (nitrilase associated)	GNAT_nitrilase_fustion	Experimental Subsystems	
Isopropylmalate/homocitrate/citramalate synthases	GNAT_nitrilase_fustion	Experimental Subsystems	
NADP-dependent malic enzyme (EC 1.1.1.40)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Malate dehydrogenase (EC 1.1.1.37)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Pyruvate carboxylase (EC 6.4.1.1)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Citrate lyase beta chain (EC 4.1.3.6)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Citrate lyase alpha chain (EC 4.1.3.6)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Immune-responsive protein 1	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Similar to citrate lyase beta chain, 10	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Citrate_Metabolism_KE3	Carbohydrates	Organic acids
Catalase (EC 1.11.1.6)	Catalases	Stress Response	
Stress response diiron-containing protein YciF	Catalases	Stress Response	
Manganese catalase (EC 1.11.1.6)	Catalases	Stress Response	
Mn-containing catalase	Catalases	Stress Response	
NADP-dependent malic enzyme (EC 1.1.1.40)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Malate dehydrogenase (EC 1.1.1.37)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Citrate lyase beta chain (EC 4.1.3.6)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Citrate lyase alpha chain (EC 4.1.3.6)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.-), actinobacterial type	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.24)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
(3S)-malyl-CoA thioesterase (EC 3.1.2.n2)	Citrate_Metabolism_KE5	Carbohydrates	Organic acids
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component ThiW of predicted thiazole ECF transporter	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component ThiT of thiamin ECF transporter	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Sulfur carrier protein ThiS	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiazole synthase (EC 2.8.1.10)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiazole biosynthetic enzyme Thi4	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted thiamin transporter PnuT	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin-regulated outer membrane receptor Omr1	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine ABC transporter, ATPase component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted hydroxymethylpyrimidine transporter CytX	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted thiazole transporter ThiU	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted thiamin transporter ThiV, SSS family	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter, substrate-binding component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter, transmembrane component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter, ATPase component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter ThiZ, ATPase component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter ThiY, substrate-binding component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter ThiX, transmembrane component	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamine kinase (EC 2.7.1.89)	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin biosynthesis protein ThiC	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for Thiamin	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component YkoE of thiamin-regulated ECF transporter for Thiamin	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for Thiamin	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP_-_Bacteria	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rhodanese-like domain required for thiamine synthesis	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, substrate-binding component	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, transmembrane component	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, ATPase component	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, ATPase component	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiT of thiamin ECF transporter	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiW of predicted thiazole ECF transporter	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted hydroxymethylpyrimidine transporter CytX	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter PnuT	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiazole transporter ThiU	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-regulated outer membrane receptor Omr1	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiT	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin transport gene THI10	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
High-affinity proton/thiamine symporter Thi9	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiV, SSS family	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Extracytoplasmic thiamin (pyrophosphate?) binding lipoprotein p37, specific for Mycoplasma	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transport system permease protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ABC transporter ATP-binding protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Plasma membrane thiamine transporter (Vertebrata)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
YjbQ (alternate ThiE)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component HmpT of predicted hydroxymethylpyrimidine ECF transporter	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Peroxisomal membrane carrier for NAD(+)	Thiamin_biosynthesis_-_3_domains	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	Cytochrome_bo_ubiquinol_oxidase_		
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Cytochrome_bo_ubiquinol_oxidase_		
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Cytochrome_bo_ubiquinol_oxidase_		
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Cytochrome_bo_ubiquinol_oxidase_		
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Cytochrome_bo_ubiquinol_oxidase_		
Transmembrane heme transport protein MmpL3	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
FIG00820733: hypothetical protein, Rv0207c	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL4	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS4	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL5	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS5	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane heme transport protein MmpL11	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL13	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL8/MmpL10/MmpL12	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS3	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL1	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS1	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL2	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS2	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
MarR family transcriptional regulator associated with MmpL5/MmpS5 efflux system	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL6	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL7	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL9	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL family	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
membrane protein, MmpS family	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS6	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Transmembrane transport protein MmpL14	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Membrane protein MmpS14	Mycobacterial_lipid_and_multidrug_efflux_system_proteins_MmpL,_MmpS	Virulence	Resistance to antibiotics and toxic compounds
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	DUF1537-pdxA2	Experimental Subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	DUF1537-pdxA2	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	DUF1537-pdxA2	Experimental Subsystems	
Gluconate permease	DUF1537-pdxA2	Experimental Subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	DUF1537-pdxA2	Experimental Subsystems	
DUF1537 ygbK type II	DUF1537-pdxA2	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	DUF1537-pdxA2	Experimental Subsystems	
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	DUF1537-pdxA2	Experimental Subsystems	
Hydroxypyruvate isomerase (EC 5.3.1.22)	DUF1537-pdxA2	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	DUF1537-pdxA2	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	DUF1537-pdxA2	Experimental Subsystems	
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	DUF1537-pdxA2	Experimental Subsystems	
Nucleoside-diphosphate-sugar epimerases	DUF1537-pdxA2	Experimental Subsystems	
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	DUF1537-pdxA2	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, periplasmic component	DUF1537-pdxA2	Experimental Subsystems	
Alcohol dehydrogenase (EC 1.1.1.1)	DUF1537-pdxA2	Experimental Subsystems	
Low-specificity L-threonine aldolase (EC 4.1.2.48)	DUF1537-pdxA2	Experimental Subsystems	
Homoserine kinase (EC 2.7.1.39)	DUF1537-pdxA2	Experimental Subsystems	
2-keto-3-deoxygluconate permease (KDG permease)	DUF1537-pdxA2	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	DUF1537-pdxA2	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	DUF1537-pdxA2	Experimental Subsystems	
transcriptional regulator, DeoR family	DUF1537-pdxA2	Experimental Subsystems	
Dihydrodipicolinate synthase family	DUF1537-pdxA2	Experimental Subsystems	
similar to ribulose-1,5-bisphosphate carboxylase, Type III	DUF1537-pdxA2	Experimental Subsystems	
DUF1537 LInked to Rubiscolike protein	DUF1537-pdxA2	Experimental Subsystems	
PdxA-like	DUF1537-pdxA2	Experimental Subsystems	
DUF1537 linked to pdxA	DUF1537-pdxA2	Experimental Subsystems	
Transporter, MFS superfamily	DUF1537-pdxA2	Experimental Subsystems	
FIG00513511: hypothetical protein	DUF1537-pdxA2	Experimental Subsystems	
TphB, terephthalate 1,2-cis-dihydrodiol dehydrogenase	DUF1537-pdxA2	Experimental Subsystems	
ketose-bisphosphate aldolase class-II family protein	DUF1537-pdxA2	Experimental Subsystems	
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	DUF1537-JJT	Experimental Subsystems	
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	DUF1537-JJT	Experimental Subsystems	
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	DUF1537-JJT	Experimental Subsystems	
Gluconate permease	DUF1537-JJT	Experimental Subsystems	
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	DUF1537-JJT	Experimental Subsystems	
DUF1537 ygbK type II	DUF1537-JJT	Experimental Subsystems	
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	DUF1537-JJT	Experimental Subsystems	
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	DUF1537-JJT	Experimental Subsystems	
Hydroxypyruvate isomerase (EC 5.3.1.22)	DUF1537-JJT	Experimental Subsystems	
Phosphoserine aminotransferase (EC 2.6.1.52)	DUF1537-JJT	Experimental Subsystems	
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	DUF1537-JJT	Experimental Subsystems	
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	DUF1537-JJT	Experimental Subsystems	
Nucleoside-diphosphate-sugar epimerases	DUF1537-JJT	Experimental Subsystems	
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	DUF1537-JJT	Experimental Subsystems	
TRAP-type C4-dicarboxylate transport system, periplasmic component	DUF1537-JJT	Experimental Subsystems	
Alcohol dehydrogenase (EC 1.1.1.1)	DUF1537-JJT	Experimental Subsystems	
Low-specificity L-threonine aldolase (EC 4.1.2.48)	DUF1537-JJT	Experimental Subsystems	
Homoserine kinase (EC 2.7.1.39)	DUF1537-JJT	Experimental Subsystems	
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	DUF1537-JJT	Experimental Subsystems	
Transcriptional regulator, GntR family	DUF1537-JJT	Experimental Subsystems	
2-keto-3-deoxygluconate permease (KDG permease)	DUF1537-JJT	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	DUF1537-JJT	Experimental Subsystems	
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	DUF1537-JJT	Experimental Subsystems	
D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2)	DUF1537-JJT	Experimental Subsystems	
transcriptional regulator, DeoR family	DUF1537-JJT	Experimental Subsystems	
Dihydrodipicolinate synthase family	DUF1537-JJT	Experimental Subsystems	
similar to ribulose-1,5-bisphosphate carboxylase, Type III	DUF1537-JJT	Experimental Subsystems	
DUF1537 LInked to Rubiscolike protein	DUF1537-JJT	Experimental Subsystems	
PdxA-like	DUF1537-JJT	Experimental Subsystems	
DUF1537 linked to pdxA	DUF1537-JJT	Experimental Subsystems	
Transporter, MFS superfamily	DUF1537-JJT	Experimental Subsystems	
KDO-hydrolase	DUF1537-JJT	Experimental Subsystems	
FIG00513511: hypothetical protein	DUF1537-JJT	Experimental Subsystems	
TphB, terephthalate 1,2-cis-dihydrodiol dehydrogenase	DUF1537-JJT	Experimental Subsystems	
ketose-bisphosphate aldolase class-II family protein	DUF1537-JJT	Experimental Subsystems	
Acetyl-CoA acetyltransferase (EC 2.3.1.9), FadA2	Mycobacterial_gene_cluster_associated_with_resistance_against_FAS-II_antibiotics	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), FabG4	Mycobacterial_gene_cluster_associated_with_resistance_against_FAS-II_antibiotics	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Probable (3R)-hydroxyacyl-CoA dehydratase HtdX	Mycobacterial_gene_cluster_associated_with_resistance_against_FAS-II_antibiotics	Fatty Acids, Lipids, and Isoprenoids	Fatty acids
Serine hydroxymethyltransferase (EC 2.1.2.1)	Glycine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
Low-specificity L-threonine aldolase (EC 4.1.2.48)	Glycine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Glycine_HMP	Amino Acids and Derivatives	Alanine, serine, and glycine
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	N-Acetylglucosamine_utilization_HGM	Experimental Subsystems	
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	N-Acetylglucosamine_utilization_HGM	Experimental Subsystems	
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	N-Acetylglucosamine_utilization_HGM	Experimental Subsystems	
Predicted N-acetyl-glucosamine kinase 2, ROK family (EC 2.7.1.59)	N-Acetylglucosamine_utilization_HGM	Experimental Subsystems	
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	N-Acetylglucosamine_utilization_HGM	Experimental Subsystems	
N-acetylmannosamine kinase (EC 2.7.1.60)	N-Acetylneuraminic_acid_utilization_HGM	Experimental Subsystems	
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	N-Acetylneuraminic_acid_utilization_HGM	Experimental Subsystems	
N-acetylneuraminate lyase (EC 4.1.3.3)	N-Acetylneuraminic_acid_utilization_HGM	Experimental Subsystems	
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Galactose_utilization_HGM	Experimental Subsystems	
UDP-glucose 4-epimerase (EC 5.1.3.2)	Galactose_utilization_HGM	Experimental Subsystems	
Aldose 1-epimerase (EC 5.1.3.3)	Galactose_utilization_HGM	Experimental Subsystems	
Galactokinase (EC 2.7.1.6)	Galactose_utilization_HGM	Experimental Subsystems	
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	Galactose_utilization_HGM	Experimental Subsystems	
UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7)	Galactose_utilization_HGM	Experimental Subsystems	
L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	Galactose_utilization_HGM	Experimental Subsystems	
L-galactono-1,5-lactone lactonase	Galactose_utilization_HGM	Experimental Subsystems	
Predicted L-galactose permease, FucP family	Galactose_utilization_HGM	Experimental Subsystems	
L-galactonate dehydrogenase	Galactose_utilization_HGM	Experimental Subsystems	
Alpha-L-fucosidase (EC 3.2.1.51)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fucose isomerase (EC 5.3.1.25)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fucose mutarotase (EC 5.1.3.29)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuculokinase (EC 2.7.1.51)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuculose phosphate aldolase (EC 4.1.2.17)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Fucose permease	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Predicted transcriptional regulator for fucose utilization, DeoR family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Predicted transcriptional regulator for fucose utilization, AraC family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Fucose ABC transport system, substrate-binding protein, predicted	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Fucose ABC transport system, permease protein, predicted	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Fucose ABC transport system, ATP-binding protein, predicted	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Alpha-L-fucosidase (EC 3.2.1.51), GH95 family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fucose mutarotase, type 2 (EC 5.1.3.n2)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fucose kinase (EC 2.7.1.52)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Transcriptional regulator of fucose utilization, GntR family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuculokinase (EC 2.7.1.51), predicted	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Predicted transcriptional regulator for fucose utilization, LacI family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuculose phosphate aldolase, type 2 (EC 4.1.2.17)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Alpha-L-fucosidase (EC 3.2.1.51), GH42 family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuco-beta-pyranose dehydrogenase, type 2 (EC 1.1.1.122)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuconate dehydratase (EC 4.2.1.68)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuconolactone hydrolase	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
2-keto-3-deoxy-L-fuconate dehydrogenase, type 2, putative	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Predicted 2,4-diketo-3-deoxy-L-fuconate hydrolase, DHDPS family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Predicted fucose-binding secreted protein	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuculose phosphate aldolase, type 3 (EC 4.1.2.17)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Fucose transporter, Sugar_tr family, predicted	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
Predicted transcriptional regulator for fucose utilization, IclR family	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122)	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
2-keto-3-deoxy-L-fuconate dehydrogenase	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
2,4-diketo-3-deoxy-L-fuconate hydrolase	L-fucose_utilization_HGM	Carbohydrates	Monosaccharides
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Biotin synthesis protein BioC	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Dethiobiotin synthetase (EC 6.3.3.3)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Biotin synthase (EC 2.8.1.6)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
L-threonine 3-dehydrogenase (EC 1.1.1.103)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Serine palmitoyltransferase (EC 2.3.1.50)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
AMP-binding enzyme, associated with serine palmitoyltransferase	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
FIG010505: hypothetical protein	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
3-dehydrosphinganine reductase (EC 1.1.1.102)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Acyl-CoA-dependent ceramide synthase (EC 2.3.1.24)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
Putative fatty acid desaturase (EC 1.14.-.-)	Bacterial_Sphingolipids_(mshpak)	Experimental Subsystems	
6-phosphofructokinase (EC 2.7.1.11)	Test_PPP_glycolysys	Experimental Subsystems	
Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90)	Test_PPP_glycolysys	Experimental Subsystems	
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Test_PPP_glycolysys	Experimental Subsystems	
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Test_PPP_glycolysys	Experimental Subsystems	
6-phosphofructokinase, fungal/animal type (EC 2.7.1.11)	Test_PPP_glycolysys	Experimental Subsystems	
6-phosphofructokinase class II (EC 2.7.1.11)	Test_PPP_glycolysys	Experimental Subsystems	
Serine palmitoyltransferase (EC 2.3.1.50)	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
FIG010773: NAD-dependent epimerase/dehydratase	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Hypothetical protein associated with Serine palmitoyltransferase	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Sphingolipid (R)-alpha-hydroxylase FAH1 (no EC)	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
AMP-binding enzyme, associated with serine palmitoyltransferase	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Acyl carrier protein associated with serine palmitoyltransferase	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Inner membrane protein YghQ, probably involved in polysaccharide biosynthesis	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Transposase InsH for insertion sequence element IS5	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Sphingolipid (S)-alpha-hydroxylase (no EC)	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Serine palmitoyltransferase, subunit LCB1 (EC 2.3.1.50)	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Serine palmitoyltransferase, subunit LCB2 (EC 2.3.1.50)	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Sphingoid long chain base kinase (EC 2.7.1.91)	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Acyl-CoA-dependent ceramide synthase (EC 2.3.1.24)	Bacterial_Sphingolipids	Fatty Acids, Lipids, and Isoprenoids	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	ThiD2_display	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	ThiD2_display	Experimental Subsystems	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD2_display	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	ThiD2_display	Experimental Subsystems	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	ThiD2_display	Experimental Subsystems	
Thiazole synthase (EC 2.8.1.10)	ThiD2_display	Experimental Subsystems	
Glycine oxidase ThiO (EC 1.4.3.19)	ThiD2_display	Experimental Subsystems	
Thiamine-monophosphate kinase (EC 2.7.4.16)	ThiD2_display	Experimental Subsystems	
Thiamin pyrophosphokinase (EC 2.7.6.2)	ThiD2_display	Experimental Subsystems	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	ThiD2_display	Experimental Subsystems	
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	ThiD2_display	Experimental Subsystems	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with conserved Glu in active site	ThiD2_display	Experimental Subsystems	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	ThiD2_display	Experimental Subsystems	
Substrate-specific component ThiW of predicted thiazole ECF transporter	ThiD2_display	Experimental Subsystems	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	ThiD2_display	Experimental Subsystems	
Pyridoxal kinase (EC 2.7.1.35)	ThiD2_display	Experimental Subsystems	
Predicted hydroxymethylpyrimidine transporter CytX	ThiD2_display	Experimental Subsystems	
Thiamin ABC transporter, substrate-binding component	ThiD2_display	Experimental Subsystems	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	ThiD2_display	Experimental Subsystems	
Thiamine kinase (EC 2.7.1.89)	ThiD2_display	Experimental Subsystems	
thiamine biosynthesis protein ThiS	ThiD2_display	Experimental Subsystems	
Thiamine biosynthesis protein ThiF	ThiD2_display	Experimental Subsystems	
Thiazole biosynthetic enzyme Thi4	ThiD2_display	Experimental Subsystems	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	ThiD2_display	Experimental Subsystems	
BcmC	ThiD2_display	Experimental Subsystems	
5-oxo-L-prolinase, putative	5-Oxoprolinase	Experimental Subsystems	
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	5-Oxoprolinase	Experimental Subsystems	
Lactam utilization protein LamB	5-Oxoprolinase	Experimental Subsystems	
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	5-Oxoprolinase	Experimental Subsystems	
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	5-Oxoprolinase	Experimental Subsystems	
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	5-Oxoprolinase	Experimental Subsystems	
Urea carboxylase (EC 6.3.4.6) without Allophanate hydrolase 2 domains	5-Oxoprolinase	Experimental Subsystems	
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	5-Oxoprolinase	Experimental Subsystems	
tRNA S(4)U 4-thiouridine synthase (former ThiI)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Rhodanese-like domain required for thiamine synthesis	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, substrate-binding component	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, transmembrane component	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin ABC transporter, ATPase component	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Pyridoxal kinase (EC 2.7.1.35)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein ThiS	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole synthase (EC 2.8.1.10)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with Cys in active site	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine ABC transporter, ATPase component	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiT of thiamin ECF transporter	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
5-Formyltetrahydrofolate cycloligase paralog implicated in thiamin metabolism	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
NUDIX hydrolase, associated with Thiamin pyrophosphokinase	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component ThiW of predicted thiazole ECF transporter	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine kinase (EC 2.7.1.89)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted hydroxymethylpyrimidine transporter CytX	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter PnuT	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiazole transporter ThiU	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-regulated outer membrane receptor Omr1	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety, TenA subgroup with conserved Glu in active site	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hypothetical alternative hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiazole biosynthetic enzyme Thi4	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiT	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Mitochondrial DNA damage tolerance	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Hydroxymethylpyrimidine synthesis protein THI5	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamin transport gene THI10	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
High-affinity proton/thiamine symporter Thi9	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Predicted thiamin transporter ThiV, SSS family	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Extracytoplasmic thiamin (pyrophosphate?) binding lipoprotein p37, specific for Mycoplasma	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ABC transporter ATP-binding protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Transport system permease protein, associated with thiamin (pyrophosphate?) binding lipoprotein p37	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiamine-triphosphatase (EC 3.6.1.28)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Plasma membrane thiamine transporter (Vertebrata)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Reduced folate carrier protein RFC1, also transports thiamine mono- and diphosphate	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2), putative	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
YjbQ (alternate ThiE)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiaminase 1 (EC 2.5.1.2)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Substrate-specific component HmpT of predicted hydroxymethylpyrimidine ECF transporter	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Peroxisomal membrane carrier for NAD(+)	Thiamin_biosynthesis_2	Cofactors, Vitamins, Prosthetic Groups, Pigments	
Thiol-activated cytolysin	Listeria_monocytogenes_virulome	Experimental Subsystems	
Internalin A (LPXTG motif)	Listeria_monocytogenes_virulome	Experimental Subsystems	
Internalin B (GW modules)	Listeria_monocytogenes_virulome	Experimental Subsystems	
N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.80)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Tagatose-6-phosphate kinase (EC 2.7.1.144)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIA component	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IIC component	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, N-acetylgalactosamine-specific IID component	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Beta-galactosidase (EC 3.2.1.23)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Polysaccharide deacetylase	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, galactosamine-specific IIA component	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, galactosamine-specific IIC component	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
PTS system, galactosamine-specific IID component	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Galactosamine-6-phosphate isomerase (galactosamine-6-phosphate deaminase) (EC 5.3.1.-)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Tagatose-6-phosphate kinase AgaZ (EC 2.7.1.144)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Predicted sodium-dependent N-acetylgalactosamine transporter	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
N-acetylgalactosamine-6-sulfatase (EC 3.1.6.4)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
Predicted N-acetylgalactosamine kinase, COG2971 (EC 2.7.1.157)	N-Acetylgalactosamine_utilization_HGM	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	dpd_copy_JJT	Experimental Subsystems	
tgtA5 cluster protein 1	dpd_copy_JJT	Experimental Subsystems	
tgtA5 cluster protein 2	dpd_copy_JJT	Experimental Subsystems	
tgtA5 cluster protein 3	dpd_copy_JJT	Experimental Subsystems	
COG0553: Superfamily II DNA/RNA helicases, SNF2 family	dpd_copy_JJT	Experimental Subsystems	
ATP-dependent DNA helicase RecQ	dpd_copy_JJT	Experimental Subsystems	
COG0419: ATPase involved in DNA repair	dpd_copy_JJT	Experimental Subsystems	
Lhr-like helicases	dpd_copy_JJT	Experimental Subsystems	
PLD-like domain	dpd_copy_JJT	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	dpd_copy_JJT	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	dpd_copy_JJT	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	dpd_copy_JJT	Experimental Subsystems	
Putative preQ0 transporter YhhQ	dpd_copy_JJT	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	dpd_copy_JJT	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	dpd_copy_JJT	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	dpd_copy_JJT	Experimental Subsystems	
ATP-dependent DNA helicase UvrD/PcrA	dpd_copy_JJT	Experimental Subsystems	
Adenylate cyclase (EC 4.6.1.1)	dpd_copy_JJT	Experimental Subsystems	
Putative preQ0 transporter	dpd_copy_JJT	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	dpd_copy_JJT	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	dpd_copy_JJT	Experimental Subsystems	
PD-(D/E)XK nuclease superfamily	dpd_copy_JJT	Experimental Subsystems	
COG2251, Predicted RecB family nuclease	dpd_copy_JJT	Experimental Subsystems	
NurA nuclease superfamily protein	dpd_copy_JJT	Experimental Subsystems	
yjgR-type ATPase	dpd_copy_JJT	Experimental Subsystems	
MUG-like Uracil-DNA glycosylase enzyme family	dpd_copy_JJT	Experimental Subsystems	
DEAD/DEAH box helicase-like protein	dpd_copy_JJT	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic sulfite reductase subunit A	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic sulfite reductase subunit B	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic sulfite reductase subunit C (EC 1.8.1.-)	Respiration_HGM	Respiration	Electron accepting reactions
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Respiration_HGM	Respiration	Electron accepting reactions
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Respiration_HGM	Respiration	Electron accepting reactions
Respiratory nitrate reductase delta chain (EC 1.7.99.4)	Respiration_HGM	Respiration	Electron accepting reactions
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrate/nitrite transporter NarK	Respiration_HGM	Respiration	Electron accepting reactions
Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)	Respiration_HGM	Respiration	Electron accepting reactions
Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)	Respiration_HGM	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)	Respiration_HGM	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)	Respiration_HGM	Respiration	Electron accepting reactions
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)	Respiration_HGM	Respiration	Electron accepting reactions
Predicted nitrite reductase [NAD(P)H] large subunit, associated with glutamine/glutamate metabolism	Respiration_HGM	Respiration	Electron accepting reactions
Predicted nitrite reductase [NAD(P)H] small subunit, associated with glutamine/glutamate metabolism	Respiration_HGM	Respiration	Electron accepting reactions
Succinate dehydrogenase cytochrome b subunit	Respiration_HGM	Respiration	Electron accepting reactions
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Respiration_HGM	Respiration	Electron accepting reactions
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c552 precursor (EC 1.7.2.2)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c nitrite reductase, small subunit NrfH	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c-type heme lyase subunit nrfI, nitrite reductase complex assembly	Respiration_HGM	Respiration	Electron accepting reactions
Hypothetical protein CyfX, associated with predicted extracellular microaerobic reductase	Respiration_HGM	Respiration	Electron accepting reactions
Predicted extracellular microaerobic reductase, FeS cluster membrane subunit	Respiration_HGM	Respiration	Electron accepting reactions
Predicted extracellular microaerobic reductase, catalytic and thiol-binding subunit	Respiration_HGM	Respiration	Electron accepting reactions
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	Respiration_HGM	Respiration	Electron accepting reactions
Fumarate reductase cytochrome b subunit	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome d ubiquinol oxidase subunit CydX (EC 1.10.3.-)	Respiration_HGM	Respiration	Electron accepting reactions
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Respiration_HGM	Respiration	Electron accepting reactions
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	Respiration_HGM	Respiration	Electron accepting reactions
FIG00639295: hypothetical protein	Respiration_HGM	Respiration	Electron accepting reactions
Uncharacterized cytochrome b-like protein YdhU	Respiration_HGM	Respiration	Electron accepting reactions
Uncharacterized ferredoxin-like protein YdhX	Respiration_HGM	Respiration	Electron accepting reactions
FIG00637966: hypothetical protein	Respiration_HGM	Respiration	Electron accepting reactions
Molybdopterin-containing protein YdhV, similar to aldehyde:ferredoxin oxidoreductase	Respiration_HGM	Respiration	Electron accepting reactions
Putative oxidoreductase, Fe-S subunit YdhY	Respiration_HGM	Respiration	Electron accepting reactions
Fumarate reductase subunit D	Respiration_HGM	Respiration	Electron accepting reactions
Fumarate reductase subunit C	Respiration_HGM	Respiration	Electron accepting reactions
Succinate dehydrogenase cytochrome b-556 subunit	Respiration_HGM	Respiration	Electron accepting reactions
Succinate dehydrogenase hydrophobic membrane anchor protein	Respiration_HGM	Respiration	Electron accepting reactions
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrate reductase cytochrome c550-type subunit	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c-type protein NapC	Respiration_HGM	Respiration	Electron accepting reactions
Polyferredoxin NapH (periplasmic nitrate reductase)	Respiration_HGM	Respiration	Electron accepting reactions
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Respiration_HGM	Respiration	Electron accepting reactions
Ferredoxin-type protein NapF (periplasmic nitrate reductase)	Respiration_HGM	Respiration	Electron accepting reactions
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrite transporter NirC	Respiration_HGM	Respiration	Electron accepting reactions
Nitrate ABC transporter, nitrate-binding protein	Respiration_HGM	Respiration	Electron accepting reactions
Nitrate ABC transporter, permease protein	Respiration_HGM	Respiration	Electron accepting reactions
Nitrate ABC transporter, ATP-binding protein	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c-type protein NrfB precursor	Respiration_HGM	Respiration	Electron accepting reactions
NrfC protein	Respiration_HGM	Respiration	Electron accepting reactions
NrfD protein	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c-type protein TorC	Respiration_HGM	Respiration	Electron accepting reactions
Trimethylamine-N-oxide reductase (EC 1.6.6.9), TorA	Respiration_HGM	Respiration	Electron accepting reactions
Functional role page for Chaperone protein TorD	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3)	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfE	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic selenate reductase protein YnfG	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic selenate reductase protein YnfH	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic selenate reductase chaperone YnfI	Respiration_HGM	Respiration	Electron accepting reactions
Tetrathionate reductase subunit A	Respiration_HGM	Respiration	Electron accepting reactions
Tetrathionate reductase subunit C	Respiration_HGM	Respiration	Electron accepting reactions
Tetrathionate reductase subunit B	Respiration_HGM	Respiration	Electron accepting reactions
Thiosulfate reductase precursor (EC 1.-.-.-)	Respiration_HGM	Respiration	Electron accepting reactions
Thiosulfate reductase electron transport protein phsB	Respiration_HGM	Respiration	Electron accepting reactions
Thiosulfate reductase cytochrome B subunit	Respiration_HGM	Respiration	Electron accepting reactions
Formate hydrogenlyase subunit 2	Respiration_HGM	Respiration	Electron accepting reactions
Formate hydrogenlyase subunit 3	Respiration_HGM	Respiration	Electron accepting reactions
Formate hydrogenlyase subunit 4	Respiration_HGM	Respiration	Electron accepting reactions
Formate hydrogenlyase subunit 5	Respiration_HGM	Respiration	Electron accepting reactions
Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit	Respiration_HGM	Respiration	Electron accepting reactions
Formate hydrogenlyase subunit 7	Respiration_HGM	Respiration	Electron accepting reactions
Formate hydrogenlyase maturation protein HycH	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase 3 maturation protease	Respiration_HGM	Respiration	Electron accepting reactions
Similar to carbon monoxide dehydrogenase CooS subunit, associated with nitrite assimilation	Respiration_HGM	Respiration	Electron accepting reactions
Predicted anaerobic reductase, FAD binding subunit	Respiration_HGM	Respiration	Electron accepting reactions
Predicted anaerobic reductase, molybdopterin-binding subunit	Respiration_HGM	Respiration	Electron accepting reactions
Predicted anaerobic reductase, iron-sulfur binding	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase chaperone DmsD	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase, integral membrane protein, NrfD-like	Respiration_HGM	Respiration	Electron accepting reactions
Energy-conserving hydrogenase (ferredoxin), subunit A	Respiration_HGM	Respiration	Electron accepting reactions
Energy-conserving hydrogenase (ferredoxin), subunit B	Respiration_HGM	Respiration	Electron accepting reactions
Energy-conserving hydrogenase (ferredoxin), subunit C	Respiration_HGM	Respiration	Electron accepting reactions
Energy-conserving hydrogenase (ferredoxin), subunit D	Respiration_HGM	Respiration	Electron accepting reactions
Energy-conserving hydrogenase (ferredoxin), subunit E	Respiration_HGM	Respiration	Electron accepting reactions
Energy-conserving hydrogenase (ferredoxin), subunit F	Respiration_HGM	Respiration	Electron accepting reactions
Predicted anaerobic reductase, anchor subunit	Respiration_HGM	Respiration	Electron accepting reactions
Predicted anaerobic reductase, chaperone	Respiration_HGM	Respiration	Electron accepting reactions
Predicted anaerobic reductase, polyferredoxin	Respiration_HGM	Respiration	Electron accepting reactions
Ferredoxin-type protein, NapF-like	Respiration_HGM	Respiration	Electron accepting reactions
Nitrate/nitrite transporter NasA	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Predicted extracellular microaerobic reductase, flavin-binding subunit	Respiration_HGM	Respiration	Electron accepting reactions
Predicted extracellular microaerobic reductase, anchor subunit	Respiration_HGM	Respiration	Electron accepting reactions
Hypothetical protein, associated with Ydh genes, FMN binding	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Periplasmic nitrate reductase component NapE	Respiration_HGM	Respiration	Electron accepting reactions
Copper-containing nitrite reductase (EC 1.7.2.1)	Respiration_HGM	Respiration	Electron accepting reactions
Nitric-oxide reductase subunit B (EC 1.7.99.7)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrous-oxide reductase (EC 1.7.99.6)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrous oxide reductase maturation protein NosR	Respiration_HGM	Respiration	Electron accepting reactions
Nitrous oxide reductase maturation protein NosD	Respiration_HGM	Respiration	Electron accepting reactions
Nitrous oxide reductase maturation protein NosF (ATPase)	Respiration_HGM	Respiration	Electron accepting reactions
Nitrous oxide reductase maturation transmembrane protein NosY	Respiration_HGM	Respiration	Electron accepting reactions
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Respiration_HGM	Respiration	Electron accepting reactions
Succinate dehydrogenase cytochrome b558 subunit	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase associated ferredoxin, NapF-like	Respiration_HGM	Respiration	Electron accepting reactions
Trimethylamine-N-oxide reductase (EC 1.6.6.9), iron-sulfur binding subunit	Respiration_HGM	Respiration	Electron accepting reactions
Dissimilatory sulfite reductase, alpha subunit (EC 1.8.99.3)	Respiration_HGM	Respiration	Electron accepting reactions
Dissimilatory sulfite reductase, beta subunit (EC 1.8.99.3)	Respiration_HGM	Respiration	Electron accepting reactions
Sulfite reduction-associated complex DsrMKJOP iron-sulfur protein DsrO (=HmeA)	Respiration_HGM	Respiration	Electron accepting reactions
Sulfite reduction-associated complex DsrMKJOP protein DsrM (= HmeC)	Respiration_HGM	Respiration	Electron accepting reactions
Sulfite reduction-associated complex DsrMKJOP protein DsrK (=HmeD)	Respiration_HGM	Respiration	Electron accepting reactions
Sulfite reduction-associated complex DsrMKJOP multiheme protein DsrJ (=HmeF)	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component A	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component B	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component C	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component D	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component E	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component F	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component G	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component H	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component I	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly	Respiration_HGM	Respiration	Electron accepting reactions
polysulfide reductase, subunit A	Respiration_HGM	Respiration	Electron accepting reactions
polysulfide reductase, subunit B	Respiration_HGM	Respiration	Electron accepting reactions
polysulfide reductase, subunit C	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfF	Respiration_HGM	Respiration	Electron accepting reactions
Hypothetical protein YdhZ	Respiration_HGM	Respiration	Electron accepting reactions
NrfD-like protein, associated with Ydh genes	Respiration_HGM	Respiration	Electron accepting reactions
Anaerobic dimethyl sulfoxide reductase associated 4Fe-4S dicluster protein, NapG-like	Respiration_HGM	Respiration	Electron accepting reactions
Predicted cytochrome C, associated with Ydh genes	Respiration_HGM	Respiration	Electron accepting reactions
Putative succinate dehydrogenase cytochrome b subunit	Respiration_HGM	Respiration	Electron accepting reactions
Respiratory arsenate reductase, Mo binding subunit (ArrA)	Respiration_HGM	Respiration	Electron accepting reactions
Respiratory arsentate reductase, FeS subunit (ArrB)	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase maturation protein TsrH	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase maturation protein TsrI (ATPase)	Respiration_HGM	Respiration	Electron accepting reactions
Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ	Respiration_HGM	Respiration	Electron accepting reactions
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein ArxB	Respiration_HGM	Respiration	Electron accepting reactions
NrfD-family membrane protein ArxC	Respiration_HGM	Respiration	Electron accepting reactions
Predicted nitrate/nitrite antiporter	Respiration_HGM	Respiration	Electron accepting reactions
NapM protein	Respiration_HGM	Respiration	Electron accepting reactions
Sulfite reduction-associated complex DsrMKJOP protein DsrP (= HmeB)	Respiration_HGM	Respiration	Electron accepting reactions
Carbon monoxide-induced hydrogenase membrane protein CooM	Respiration_HGM	Respiration	Electron accepting reactions
Carbon monoxide-induced hydrogenase proton translocating subunit CooK	Respiration_HGM	Respiration	Electron accepting reactions
Carbon monoxide-induced hydrogenase small subunit CooL	Respiration_HGM	Respiration	Electron accepting reactions
Carbon monoxide-induced hydrogenase iron-sulfur protein CooX	Respiration_HGM	Respiration	Electron accepting reactions
Carbon monoxide-induced hydrogenase NuoC-like protein CooU	Respiration_HGM	Respiration	Electron accepting reactions
Carbon monoxide-induced hydrogenase large subunit CooH	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhA subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhB subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhC subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhD subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhE subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhF subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhG subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhH subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhI subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, NiFe-hydrogenase small subunit	Respiration_HGM	Respiration	Electron accepting reactions
Energy-conserving [NiFe] hydrogenase (ferredoxin) beta subunit	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, NiFe-hydrogenase large subunit (EC 1.12.7.2)	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, MbhM subunit (EC 1.12.7.2)	Respiration_HGM	Respiration	Electron accepting reactions
Membrane bound hydrogenase, 4Fe-4S cluster-binding subunit	Respiration_HGM	Respiration	Electron accepting reactions
Hydrogenase-4 component J	Respiration_HGM	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IIII	Respiration_HGM	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit IV	Respiration_HGM	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit I	Respiration_HGM	Respiration	Electron accepting reactions
AA3-600 quinol oxidase subunit II	Respiration_HGM	Respiration	Electron accepting reactions
Dissimilatory sulfite reductase D	Respiration_HGM	Respiration	Electron accepting reactions
Adenylylsulfate reductase-associated complex QmoABC, protein QmoA	Respiration_HGM	Respiration	Electron accepting reactions
Adenylylsulfate reductase-associated complex QmoABC, protein QmoB	Respiration_HGM	Respiration	Electron accepting reactions
Adenylylsulfate reductase-associated complex QmoABC, protein QmoC	Respiration_HGM	Respiration	Electron accepting reactions
Menaquinone-cytochrome C reductase iron-sulfur subunit	Respiration_HGM	Respiration	Electron accepting reactions
Menaquinone-cytochrome c reductase, cytochrome B subunit	Respiration_HGM	Respiration	Electron accepting reactions
Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit	Respiration_HGM	Respiration	Electron accepting reactions
Cytochrome c oxidase, subunit IV (EC 1.9.3.1)	Respiration_HGM	Respiration	Electron accepting reactions
Nitric oxide reductase activation protein NorQ	Respiration_HGM	Respiration	Electron accepting reactions
Nitric oxide reductase activation protein NorD	Respiration_HGM	Respiration	Electron accepting reactions
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	dpd_ghutinet	Experimental Subsystems	
tgtA5 cluster protein 1	dpd_ghutinet	Experimental Subsystems	
tgtA5 cluster protein 2	dpd_ghutinet	Experimental Subsystems	
tgtA5 cluster protein 3	dpd_ghutinet	Experimental Subsystems	
COG0553: Superfamily II DNA/RNA helicases, SNF2 family	dpd_ghutinet	Experimental Subsystems	
ATP-dependent DNA helicase RecQ	dpd_ghutinet	Experimental Subsystems	
COG0419: ATPase involved in DNA repair	dpd_ghutinet	Experimental Subsystems	
Lhr-like helicases	dpd_ghutinet	Experimental Subsystems	
PLD-like domain	dpd_ghutinet	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	dpd_ghutinet	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	dpd_ghutinet	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	dpd_ghutinet	Experimental Subsystems	
Putative preQ0 transporter YhhQ	dpd_ghutinet	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	dpd_ghutinet	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	dpd_ghutinet	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	dpd_ghutinet	Experimental Subsystems	
ATP-dependent DNA helicase UvrD/PcrA	dpd_ghutinet	Experimental Subsystems	
Adenylate cyclase (EC 4.6.1.1)	dpd_ghutinet	Experimental Subsystems	
hypothetical protein, dpdG	dpd_ghutinet	Experimental Subsystems	
RNA polymerase associated protein RapA (EC 3.6.1.-)	dpd_ghutinet	Experimental Subsystems	
Putative preQ0 transporter	dpd_ghutinet	Experimental Subsystems	
hypothetical protein, dpdI	dpd_ghutinet	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	dpd_ghutinet	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	dpd_ghutinet	Experimental Subsystems	
PD-(D/E)XK nuclease superfamily	dpd_ghutinet	Experimental Subsystems	
COG2251, Predicted RecB family nuclease	dpd_ghutinet	Experimental Subsystems	
NurA nuclease superfamily protein	dpd_ghutinet	Experimental Subsystems	
yjgR-type ATPase	dpd_ghutinet	Experimental Subsystems	
MUG-like Uracil-DNA glycosylase enzyme family	dpd_ghutinet	Experimental Subsystems	
DEAD/DEAH box helicase-like protein	dpd_ghutinet	Experimental Subsystems	
Isochorismate synthase (EC 5.4.4.2) @ Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoate synthase (EC 4.2.1.113)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Naphthoate synthase (EC 4.1.3.36)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Demethylmenaquinone methyltransferase (EC 2.1.1.163)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-Succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate dehydrogenase, HAD superfamily	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Chorismate dehydratase (EC 4.2.1.151)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Aminodeoxyfutalosine synthase (EC 2.5.1.120)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Cyclic dehypoxanthine futalosine synthase (EC 1.21.99.2)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-6-naphthoate synthase (EC 1.14.-.-)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Aminodeoxyfutalosine nucleosidase (EC 3.2.2.30)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-6-naphthoate carboxy-lyase, UbiD-like	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-naphthoquinone polyprenyltransferase	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Chorismate--pyruvate lyase (EC 4.1.3.40)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Ubiquinone biosynthesis monooxygenase UbiB	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-demethylubiquinol 3-O-methyltransferase (EC 2.1.1.64) @ 2-polyprenyl-6-hydroxyphenyl methylase (EC 2.1.1.222)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase (EC 2.1.1.201)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis, putative	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
3-polyprenyl-4-hydroxybenzoate carboxy-lyase in Moraxellaceae, putative	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-6-naphthoate carboxy-lyase, UbiX-like	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Aminodeoxyfutalosine deaminase (EC 3.5.4.40)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
Futalosine hydrolase (EC 3.2.2.26)	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
1,4-dihydroxy-6-naphthoate synthase (EC 1.14.-.-), alternative	Quinones_biosynthesis_HGM	Cofactors, Vitamins, Prosthetic Groups, Pigments	Quinone cofactors
GTP cyclohydrolase I (EC 3.5.4.16) type 1	PTPS_Clustering	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	PTPS_Clustering	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	PTPS_Clustering	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	PTPS_Clustering	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	PTPS_Clustering	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	PTPS_Clustering	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	PTPS_Clustering	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	PTPS_Clustering	Experimental Subsystems	
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	PTPS_Clustering	Experimental Subsystems	
Sepiapterin reductase (EC 1.1.1.153)	PTPS_Clustering	Experimental Subsystems	
COG1565: Uncharacterized conserved protein	PTPS_Clustering	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	PTPS_Clustering	Experimental Subsystems	
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	PTPS_Clustering	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	PTPS_Clustering	Experimental Subsystems	
PTPS-like type 4	PTPS_Clustering	Experimental Subsystems	
Dihydroneopterin triphosphate epimerase	PTPS_Clustering	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	PTPS_Clustering	Experimental Subsystems	
PTPS family	PTPS_Clustering	Experimental Subsystems	
6-pyruvoyl-tetrahydropterin synthase related protein	PTPS_Clustering	Experimental Subsystems	
PTPS-V	PTPS_Clustering	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization polyhedral-body-like protein EutL	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization protein EutA	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine permease	Dietary_Compounds_HGM	Experimental Subsystems	
Acetaldehyde dehydrogenase (EC 1.2.1.10), ethanolamine utilization cluster	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization polyhedral-body-like protein EutN	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization polyhedral-body-like protein EutM	Dietary_Compounds_HGM	Experimental Subsystems	
ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), ethanolamine utilization	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization protein EutQ	Dietary_Compounds_HGM	Experimental Subsystems	
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Respiratory nitrate reductase delta chain (EC 1.7.99.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted nitrite reductase [NAD(P)H] large subunit, associated with glutamine/glutamate metabolism	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted nitrite reductase [NAD(P)H] small subunit, associated with glutamine/glutamate metabolism	Dietary_Compounds_HGM	Experimental Subsystems	
Succinate dehydrogenase cytochrome b subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c552 precursor (EC 1.7.2.2)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c nitrite reductase, small subunit NrfH	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c-type heme lyase subunit nrfI, nitrite reductase complex assembly	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization protein EutJ	Dietary_Compounds_HGM	Experimental Subsystems	
Hypothetical protein CyfX, associated with predicted extracellular microaerobic reductase	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted extracellular microaerobic reductase, FeS cluster membrane subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted extracellular microaerobic reductase, catalytic and thiol-binding subunit	Dietary_Compounds_HGM	Experimental Subsystems	
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	Dietary_Compounds_HGM	Experimental Subsystems	
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)	Dietary_Compounds_HGM	Experimental Subsystems	
Fumarate reductase cytochrome b subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome d ubiquinol oxidase subunit CydX (EC 1.10.3.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Fumarate reductase subunit D	Dietary_Compounds_HGM	Experimental Subsystems	
Fumarate reductase subunit C	Dietary_Compounds_HGM	Experimental Subsystems	
Succinate dehydrogenase cytochrome b-556 subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Succinate dehydrogenase hydrophobic membrane anchor protein	Dietary_Compounds_HGM	Experimental Subsystems	
Periplasmic nitrate reductase precursor (EC 1.7.99.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrate reductase cytochrome c550-type subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c-type protein NapC	Dietary_Compounds_HGM	Experimental Subsystems	
Polyferredoxin NapH (periplasmic nitrate reductase)	Dietary_Compounds_HGM	Experimental Subsystems	
Ferredoxin-type protein NapG (periplasmic nitrate reductase)	Dietary_Compounds_HGM	Experimental Subsystems	
Ferredoxin-type protein NapF (periplasmic nitrate reductase)	Dietary_Compounds_HGM	Experimental Subsystems	
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c-type protein NrfB precursor	Dietary_Compounds_HGM	Experimental Subsystems	
NrfC protein	Dietary_Compounds_HGM	Experimental Subsystems	
NrfD protein	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c-type protein TorC	Dietary_Compounds_HGM	Experimental Subsystems	
Trimethylamine-N-oxide reductase (EC 1.6.6.9), TorA	Dietary_Compounds_HGM	Experimental Subsystems	
Functional role page for Chaperone protein TorD	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3)	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3)	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfE	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic selenate reductase protein YnfG	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic selenate reductase protein YnfH	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic selenate reductase chaperone YnfI	Dietary_Compounds_HGM	Experimental Subsystems	
Tetrathionate reductase subunit A	Dietary_Compounds_HGM	Experimental Subsystems	
Tetrathionate reductase subunit C	Dietary_Compounds_HGM	Experimental Subsystems	
Tetrathionate reductase subunit B	Dietary_Compounds_HGM	Experimental Subsystems	
Thiosulfate reductase precursor (EC 1.-.-.-)	Dietary_Compounds_HGM	Experimental Subsystems	
Thiosulfate reductase electron transport protein phsB	Dietary_Compounds_HGM	Experimental Subsystems	
Thiosulfate reductase cytochrome B subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization polyhedral-body-like protein EutK	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization protein EutG	Dietary_Compounds_HGM	Experimental Subsystems	
Phosphate acetyltransferase (EC 2.3.1.8), ethanolamine utilization-specific	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization protein EutP	Dietary_Compounds_HGM	Experimental Subsystems	
Ethanolamine utilization polyhedral-body-like protein EutS	Dietary_Compounds_HGM	Experimental Subsystems	
Choline trimethylamine-lyase	Dietary_Compounds_HGM	Experimental Subsystems	
Choline trimethylamine-lyase activating protein	Dietary_Compounds_HGM	Experimental Subsystems	
Acetaldehyde dehydrogenase, choline utilization cluster (EC 1.2.1.10)	Dietary_Compounds_HGM	Experimental Subsystems	
Aldehyde-alcohol dehydrogenase in choline utilization cluster	Dietary_Compounds_HGM	Experimental Subsystems	
Bacterial microcompartement structural protein, EutJ like	Dietary_Compounds_HGM	Experimental Subsystems	
Glycine reductase component B beta subunit (EC 1.21.4.2)	Dietary_Compounds_HGM	Experimental Subsystems	
Glycine reductase component B alpha subunit (EC 1.21.4.2)	Dietary_Compounds_HGM	Experimental Subsystems	
Glycine/sarcosine/betaine reductase protein A @ selenocysteine-containing	Dietary_Compounds_HGM	Experimental Subsystems	
Glycine reductase component B gamma subunit (EC 1.21.4.2) @ selenocysteine-containing	Dietary_Compounds_HGM	Experimental Subsystems	
Glycine/sarcosine/betaine reductase component C chain 1	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase chaperone DmsD	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase, integral membrane protein, NrfD-like	Dietary_Compounds_HGM	Experimental Subsystems	
Glycine/sarcosine/betaine reductase component C chain 2	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted extracellular microaerobic reductase, flavin-binding subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted extracellular microaerobic reductase, anchor subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Periplasmic nitrate reductase component NapE	Dietary_Compounds_HGM	Experimental Subsystems	
Copper-containing nitrite reductase (EC 1.7.2.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitric-oxide reductase subunit B (EC 1.7.99.7)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrous-oxide reductase (EC 1.7.99.6)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrous oxide reductase maturation protein NosR	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrous oxide reductase maturation protein NosD	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrous oxide reductase maturation protein NosF (ATPase)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrous oxide reductase maturation transmembrane protein NosY	Dietary_Compounds_HGM	Experimental Subsystems	
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Dietary_Compounds_HGM	Experimental Subsystems	
Succinate dehydrogenase cytochrome b558 subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase associated ferredoxin, NapF-like	Dietary_Compounds_HGM	Experimental Subsystems	
Trimethylamine-N-oxide reductase (EC 1.6.6.9), iron-sulfur binding subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Bacterial microcompartement structural protein, PduJ like	Dietary_Compounds_HGM	Experimental Subsystems	
Bacterial microcompartement structural protein, EutN like	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly	Dietary_Compounds_HGM	Experimental Subsystems	
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	Dietary_Compounds_HGM	Experimental Subsystems	
polysulfide reductase, subunit A	Dietary_Compounds_HGM	Experimental Subsystems	
polysulfide reductase, subunit B	Dietary_Compounds_HGM	Experimental Subsystems	
polysulfide reductase, subunit C	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein YnfF	Dietary_Compounds_HGM	Experimental Subsystems	
Anaerobic dimethyl sulfoxide reductase associated 4Fe-4S dicluster protein, NapG-like	Dietary_Compounds_HGM	Experimental Subsystems	
Putative succinate dehydrogenase cytochrome b subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase maturation protein TsrH	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase maturation protein TsrI (ATPase)	Dietary_Compounds_HGM	Experimental Subsystems	
Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ	Dietary_Compounds_HGM	Experimental Subsystems	
NapM protein	Dietary_Compounds_HGM	Experimental Subsystems	
Betaine reductase component B alpha subunit (EC 1.21.4.4)	Dietary_Compounds_HGM	Experimental Subsystems	
Betaine reductase component B beta subunit (EC 1.21.4.4) @ selenocysteine-containing	Dietary_Compounds_HGM	Experimental Subsystems	
Bacterial microcompartement structural protein, PduJ/EutM like	Dietary_Compounds_HGM	Experimental Subsystems	
Bacterial microcompartement structural protein, PduU like	Dietary_Compounds_HGM	Experimental Subsystems	
Bacterial microcompartement structural protein, PduV like	Dietary_Compounds_HGM	Experimental Subsystems	
AA3-600 quinol oxidase subunit IIII	Dietary_Compounds_HGM	Experimental Subsystems	
AA3-600 quinol oxidase subunit IV	Dietary_Compounds_HGM	Experimental Subsystems	
AA3-600 quinol oxidase subunit I	Dietary_Compounds_HGM	Experimental Subsystems	
AA3-600 quinol oxidase subunit II	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c oxidase, subunit IV (EC 1.9.3.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Menaquinone-cytochrome C reductase iron-sulfur subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Menaquinone-cytochrome c reductase, cytochrome B subunit	Dietary_Compounds_HGM	Experimental Subsystems	
Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit	Dietary_Compounds_HGM	Experimental Subsystems	
periplasmic diheme c-type cytochrome, NapB	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome cd1 nitrite reductase (EC:1.7.2.1)	Dietary_Compounds_HGM	Experimental Subsystems	
Cytochrome c551 NirM	Dietary_Compounds_HGM	Experimental Subsystems	
Nitric-oxide reductase subunit C (EC 1.7.99.7)	Dietary_Compounds_HGM	Experimental Subsystems	
Nitric oxide reductase activation protein NorQ	Dietary_Compounds_HGM	Experimental Subsystems	
Nitric oxide reductase activation protein NorD	Dietary_Compounds_HGM	Experimental Subsystems	
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	dpd_cluster	Experimental Subsystems	
tgtA5 cluster protein 1	dpd_cluster	Experimental Subsystems	
tgtA5 cluster protein 2	dpd_cluster	Experimental Subsystems	
tgtA5 cluster protein 3	dpd_cluster	Experimental Subsystems	
DpdE, Superfamily II DNA/RNA helicases, SNF2 family	dpd_cluster	Experimental Subsystems	
DpdF, DNA helicase RecQ-like	dpd_cluster	Experimental Subsystems	
hypothetical protein, dpdG	dpd_cluster	Experimental Subsystems	
DpdH, predicted ATPase	dpd_cluster	Experimental Subsystems	
Lhr-like helicases	dpd_cluster	Experimental Subsystems	
PLD-like domain	dpd_cluster	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	dpd_cluster	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	dpd_cluster	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	dpd_cluster	Experimental Subsystems	
Putative preQ0 transporter YhhQ	dpd_cluster	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	dpd_cluster	Experimental Subsystems	
tRNA-guanine transglycosylase (EC 2.4.2.29)	dpd_cluster	Experimental Subsystems	
NADPH dependent preQ0 reductase (EC 1.7.1.13)	dpd_cluster	Experimental Subsystems	
ATP-dependent DNA helicase UvrD/PcrA	dpd_cluster	Experimental Subsystems	
Adenylate cyclase (EC 4.6.1.1)	dpd_cluster	Experimental Subsystems	
COG0553: Superfamily II DNA/RNA helicases, SNF2 family	dpd_cluster	Experimental Subsystems	
ATP-dependent DNA helicase RecQ	dpd_cluster	Experimental Subsystems	
COG0419: ATPase involved in DNA repair	dpd_cluster	Experimental Subsystems	
Putative preQ0 transporter	dpd_cluster	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	dpd_cluster	Experimental Subsystems	
PD-(D/E)XK nuclease superfamily	dpd_cluster	Experimental Subsystems	
putative DndB-like domain	dpd_cluster	Experimental Subsystems	
COG2251, Predicted RecB family nuclease	dpd_cluster	Experimental Subsystems	
NurA nuclease superfamily protein	dpd_cluster	Experimental Subsystems	
yjgR-type ATPase	dpd_cluster	Experimental Subsystems	
MUG-like Uracil-DNA glycosylase enzyme family	dpd_cluster	Experimental Subsystems	
DEAD/DEAH box helicase-like protein	dpd_cluster	Experimental Subsystems	
Lactam utilization protein LamB	pyroglutamate		
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	pyroglutamate		
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	pyroglutamate		
FIG015373: Membrane protein	pyroglutamate		
FIG001614: Membrane protein	pyroglutamate		
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	pyroglutamate		
Sepiapterin reductase (EC 1.1.1.153)	PTPS_exploration	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	PTPS_exploration	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	PTPS_exploration	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	PTPS_exploration	Experimental Subsystems	
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	PTPS_exploration	Experimental Subsystems	
PTPS family	PTPS_exploration	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	PTPS_exploration	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	PTPS_exploration	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	PTPS_exploration	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	PTPS_exploration	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	PTPS_exploration	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	PTPS_exploration	Experimental Subsystems	
COG1565: Uncharacterized conserved protein	PTPS_exploration	Experimental Subsystems	
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	PTPS_exploration	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	PTPS_exploration	Experimental Subsystems	
PTPS-like type 4	PTPS_exploration	Experimental Subsystems	
6-pyruvoyl-tetrahydropterin synthase related protein	PTPS_exploration	Experimental Subsystems	
Dihydroneopterin triphosphate epimerase	PTPS_exploration	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	PTPS_exploration	Experimental Subsystems	
PTPS-V	PTPS_exploration	Experimental Subsystems	
PTPS-VI	PTPS_exploration	Experimental Subsystems	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
FIG00031715: Predicted metal-dependent phosphoesterases (PHP family)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Substrate-specific component BioY of biotin ECF transporter	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Cysteine synthase B (EC 2.5.1.47)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Lipoyl synthase (EC 2.8.1.8)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Lipoate-protein ligase A	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
PhnP protein	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase, LipM (EC 2.3.1.181)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Metal-dependent hydrolase	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase (EC 2.3.1.181)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Proposed lipoate regulatory protein YbeD	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
COG0613, Predicted metal-dependent phosphoesterases (PHP family)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Dihydroneopterin triphosphate pyrophosphohydrolase type 2	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
NUDIX hydrolase	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Metal-dependent hydrolase (EC 3.-.-.-)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Transmembrane protein MT2276, clustered with lipoate gene	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
RDD domain containing protein	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Cysteine synthase, CysO-dependent	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Lipoate-protein ligase A type 2	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Lipoate-protein ligase A, C-terminal 70 percent	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Lipoate-protein ligase A, N-terminal 30 percent	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.55)	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
hydrolase, nudix family protein	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	LipB-Phosphatase_fusion_GB	Experimental Subsystems	
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Amidophosphoribosyltransferase (EC 2.4.2.14)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Adenylosuccinate lyase (EC 4.3.2.2)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
IMP cyclohydrolase (EC 3.5.4.10)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
IMP cyclohydrolase (EC 3.5.4.10) [alternate form]	Purine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Serine acetyltransferase (EC 2.3.1.30)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase (EC 2.5.1.47)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase B (EC 2.5.1.47)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Adenylylsulfate kinase (EC 2.7.1.25)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transport system permease protein CysT	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transport system permease protein CysW	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate and thiosulfate binding protein CysP	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate transporter, CysZ-type	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cys regulon transcriptional activator CysB	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate permease	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine gamma-lyase (EC 4.4.1.1)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cystathionine beta-synthase (EC 4.2.1.22)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Sulfate permease, Trk-type	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Cysteine synthase A (EC 2.5.1.47)	Cysteine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
ATP phosphoribosyltransferase (EC 2.4.2.17)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Adenylosuccinate synthetase (EC 6.3.4.4)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Histidyl-tRNA synthetase (EC 6.1.1.21)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
tRNA-His	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase (EC 3.1.3.15)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Histidinol dehydrogenase (EC 1.1.1.23)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
Histidinol-phosphatase [alternative form] (EC 3.1.3.15)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
ATP phosphoribosyltransferase regulatory subunit, divergent variant (EC 2.4.2.17)	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
tRNA-His-GUG	Histidine_biosynthesis_HGM	Amino Acids and Derivatives	Histidine Metabolism
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Proline_biosynthesis_HGM	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Glutamate 5-kinase (EC 2.7.2.11)	Proline_biosynthesis_HGM	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Proline_biosynthesis_HGM	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Proline_biosynthesis_HGM	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Late competence protein ComER, similarity with Pyrroline-5-carboxylate reductase	Proline_biosynthesis_HGM	Amino Acids and Derivatives	Proline and 4-hydroxyproline
Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like	Proline_biosynthesis_HGM	Amino Acids and Derivatives	Proline and 4-hydroxyproline
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Serine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Serine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase (EC 2.6.1.52)	Serine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine aminotransferase, putative (EC 2.6.1.52)	Serine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Serine hydroxymethyltransferase 1 (EC 2.1.2.1)	Serine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Phosphoserine phosphatase (EC 3.1.3.3)	Serine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Aspartokinase (EC 2.7.2.4)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine dehydrogenase (EC 1.1.1.3)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Homoserine kinase (EC 2.7.1.39)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Threonine synthase (EC 4.2.3.1)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Aspartate aminotransferase (EC 2.6.1.1)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Predicted functional analog of homoserine kinase (EC 2.7.1.-)	Threonine_and_Homoserine_biosynthesis_HGM	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine
Serine hydroxymethyltransferase (EC 2.1.2.1)	Glycine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
L-threonine 3-dehydrogenase (EC 1.1.1.103)	Glycine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	Glycine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Glycine riboswitch	Glycine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Low-specificity L-threonine aldolase (EC 4.1.2.48)	Glycine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Aspartate carbamoyltransferase (EC 2.1.3.2)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Dihydroorotase (EC 3.5.2.3)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Orotate phosphoribosyltransferase (EC 2.4.2.10)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
GTP pyrophosphokinase (EC 2.7.6.5)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Aspartate carbamoyltransferase regulatory chain (PyrI)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Dihydroorotate dehydrogenase (NAD(+)), electron transfer subunit (EC 1.3.1.14)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Dihydroorotate dehydrogenase (NAD(+)), catalytic subunit (EC 1.3.1.14)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Ornithine carbamoyltransferase (EC 2.1.3.3)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
GTP pyrophosphokinase	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Dihydroorotate dehydrogenase (EC 1.3.3.1)	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
dihydroorotate dehydrogenase	Pyrimidine_de_novo_biosynthesis_HGM	Experimental Subsystems	
Alanine racemase (EC 5.1.1.1)	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7)	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Aspartate aminotransferase (EC 2.6.1.1)	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine transaminase (EC 2.6.1.2)	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine racemase, catabolic (EC 5.1.1.1)	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Alanine racemase, biosynthetic (EC 5.1.1.1)	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Alanine_biosynthesis_HGM	Amino Acids and Derivatives	Alanine, serine, and glycine
Fumarate hydratase class II (EC 4.2.1.2)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Citrate synthase (si) (EC 2.3.3.1)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Aconitate hydratase (EC 4.2.1.3)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Malate dehydrogenase (EC 1.1.1.37)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase cytochrome b subunit	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Fumarate hydratase class I (EC 4.2.1.2)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Aconitate hydratase 2 (EC 4.2.1.3)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Malate:quinone oxidoreductase (EC 1.1.5.4)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase cytochrome b-556 subunit	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase hydrophobic membrane anchor protein	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase iron-sulfur protein (EC 1.3.5.1)	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Putative succinate dehydrogenase cytochrome b subunit	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Succinate dehydrogenase cytochrome b558 subunit	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Aconitate hydratase X, predicted	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Putative succinate dehydrogenase subunit	Central_Carbon_Metabolism_HGM	Experimental Subsystems	
Acetylornithine deacetylase (EC 3.5.1.16)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate lyase (EC 4.3.2.1)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Argininosuccinate synthase (EC 6.3.4.5)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Adenylosuccinate lyase (EC 4.3.2.2)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylglutamate kinase (EC 2.7.2.8)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Acetylornithine aminotransferase (EC 2.6.1.11)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate N-acetyltransferase (EC 2.3.1.35)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylglutamate synthase (EC 2.3.1.1)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Ornithine carbamoyltransferase (EC 2.1.3.3)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Predicted amino-acid acetyltransferase (EC 2.3.1.1) complementing ArgA function in Arginine Biosynthesis pathway	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-acetylglutamate synthase, alternative (EC 2.3.1.1)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
N-succinylornithine carbamoyltransferase (EC 2.1.3.11)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein( EC:2.6.1.11 )	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Succinylornithine transaminase (EC 2.6.1.81)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein( EC:2.6.1.11,EC:2.6.1.17 )	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
COG4992: Ornithine/acetylornithine aminotransferase	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
acetylglutamate kinase	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
argininosuccinate synthase( EC:6.3.4.5 )	Arginine_biosynthesis_HGM	Amino Acids and Derivatives	Arginine; urea cycle, polyamines
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate aminotransferase (EC 2.6.1.1)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate ammonia-lyase (EC 4.3.1.1)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-asparaginase (EC 3.5.1.1)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type I (EC 6.3.1.2)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate racemase (EC 5.1.1.3)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Aspartate--ammonia ligase (EC 6.3.1.1)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
L-asparaginase I, cytoplasmic (EC 3.5.1.1)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnB	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) YisO	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutaminase (EC 3.5.1.2)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnH	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine synthetase, clostridia type (EC 6.3.1.2)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Glutamine amidotransferase protein GlxB (EC 2.4.2.-)	Glutamate,_Aspartate_and_Asparagine_biosynthesis_HGM	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation
Sepiapterin reductase (EC 1.1.1.153)	PTPS_paralogs	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1)	PTPS_paralogs	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 1	PTPS_paralogs	Experimental Subsystems	
Dihydroneopterin aldolase (EC 4.1.2.25)	PTPS_paralogs	Experimental Subsystems	
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)	PTPS_paralogs	Experimental Subsystems	
PTPS family	PTPS_paralogs	Experimental Subsystems	
GTP cyclohydrolase I (EC 3.5.4.16) type 2	PTPS_paralogs	Experimental Subsystems	
Queuosine Biosynthesis QueC ATPase	PTPS_paralogs	Experimental Subsystems	
Queuosine Biosynthesis QueE Radical SAM	PTPS_paralogs	Experimental Subsystems	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	PTPS_paralogs	Experimental Subsystems	
Dihydropteroate synthase (EC 2.5.1.15)	PTPS_paralogs	Experimental Subsystems	
Queuosine biosynthesis QueD, PTPS-I	PTPS_paralogs	Experimental Subsystems	
COG1565: Uncharacterized conserved protein	PTPS_paralogs	Experimental Subsystems	
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	PTPS_paralogs	Experimental Subsystems	
FolM Alternative dihydrofolate reductase 1	PTPS_paralogs	Experimental Subsystems	
PTPS-like type 4	PTPS_paralogs	Experimental Subsystems	
Dihydroneopterin triphosphate epimerase	PTPS_paralogs	Experimental Subsystems	
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	PTPS_paralogs	Experimental Subsystems	
PTPS-V	PTPS_paralogs	Experimental Subsystems	
PTPS-VI	PTPS_paralogs	Experimental Subsystems	
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	DUF89_Pfam01937	Experimental Subsystems	
Acyl carrier protein	DUF89_Pfam01937	Experimental Subsystems	
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	DUF89_Pfam01937	Experimental Subsystems	
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	DUF89_Pfam01937	Experimental Subsystems	
Amidophosphoribosyltransferase (EC 2.4.2.14)	DUF89_Pfam01937	Experimental Subsystems	
GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)	DUF89_Pfam01937	Experimental Subsystems	
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	DUF89_Pfam01937	Experimental Subsystems	
N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	DUF89_Pfam01937	Experimental Subsystems	
IMP cyclohydrolase (EC 3.5.4.10)	DUF89_Pfam01937	Experimental Subsystems	
Pantothenate kinase (EC 2.7.1.33)	DUF89_Pfam01937	Experimental Subsystems	
DUF89 protein CxxC subfamily	DUF89_Pfam01937	Experimental Subsystems	
AIR Synthase, TMP kinase, hydrogenase maturation protein HypE superfamily	DUF89_Pfam01937	Experimental Subsystems	
Pantothenate kinase type II, eukaryotic (EC 2.7.1.33)	DUF89_Pfam01937	Experimental Subsystems	
Acyl carrier protein phosphodiesterase (EC 3.1.4.14)	DUF89_Pfam01937	Experimental Subsystems	
DUF89 protein RTxK subfamily	DUF89_Pfam01937	Experimental Subsystems	
DUF89-clustered redox	DUF89_Pfam01937	Experimental Subsystems	
DUF89-clustered N-acetyltransferase	DUF89_Pfam01937	Experimental Subsystems	
DUF89-clustered Fe-S assembly-repair	DUF89_Pfam01937	Experimental Subsystems	
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t6A_DNA_ghutinet	Experimental Subsystems	
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	t6A_DNA_ghutinet	Experimental Subsystems	
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	t6A_DNA_ghutinet	Experimental Subsystems	
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	t6A_DNA_ghutinet	Experimental Subsystems	
SSU ribosomal protein S21p	t6A_DNA_ghutinet	Experimental Subsystems	
NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	t6A_DNA_ghutinet	Experimental Subsystems	
Putative deoxyribonuclease YcfH	t6A_DNA_ghutinet	Experimental Subsystems	
DNA primase (EC 2.7.7.-)	t6A_DNA_ghutinet	Experimental Subsystems	
Lipoprotein-releasing system ATP-binding protein LolD	t6A_DNA_ghutinet	Experimental Subsystems	
N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)	t6A_DNA_ghutinet	Experimental Subsystems	
Protein translocase subunit SecA	t6A_DNA_ghutinet	Experimental Subsystems	
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxyethylthiazole kinase (EC 2.7.1.50)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component ThiW of predicted thiazole ECF transporter	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component ThiT of thiamin ECF transporter	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Sulfur carrier protein ThiS	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Sulfur carrier protein adenylyltransferase ThiF	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiazole synthase (EC 2.8.1.10)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiazole biosynthetic enzyme Thi4	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted thiamin transporter PnuT	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin-regulated outer membrane receptor Omr1	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamine-monophosphate kinase (EC 2.7.4.16)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Glycine oxidase ThiO (EC 1.4.3.19)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine ABC transporter, transmembrane component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine ABC transporter, ATPase component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted hydroxymethylpyrimidine transporter CytX	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
thiamine biosynthesis protein ThiS	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
2-iminoacetate synthase (ThiH) (EC 4.1.99.19)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted thiazole transporter ThiU	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Predicted thiamin transporter ThiV, SSS family	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Hydroxymethylpyrimidine kinase (EC 2.7.1.49)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter, substrate-binding component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter, transmembrane component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter, ATPase component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter ThiZ, ATPase component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter ThiY, substrate-binding component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin ABC transporter ThiX, transmembrane component	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamine kinase (EC 2.7.1.89)	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Thiamin biosynthesis protein ThiC	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for Thiamin	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Substrate-specific component YkoE of thiamin-regulated ECF transporter for Thiamin	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for Thiamin	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	Thiamin_HMP	Cofactors, Vitamins, Prosthetic Groups, Pigments	Thiamin
