LICENSE.txt
README.rst
setup.cfg
setup.py
pybedtools/_Window.pyx
pybedtools/__init__.py
pybedtools/bedtool.py
pybedtools/cbedtools.cpp
pybedtools/cbedtools.pxd
pybedtools/cbedtools.pyx
pybedtools/featurefuncs.cpp
pybedtools/featurefuncs.pyx
pybedtools/filenames.py
pybedtools/genome_registry.py
pybedtools/helpers.py
pybedtools/logger.py
pybedtools/parallel.py
pybedtools/paths.py
pybedtools/settings.py
pybedtools/stats.py
pybedtools/version.py
pybedtools.egg-info/PKG-INFO
pybedtools.egg-info/SOURCES.txt
pybedtools.egg-info/dependency_links.txt
pybedtools.egg-info/not-zip-safe
pybedtools.egg-info/requires.txt
pybedtools.egg-info/top_level.txt
pybedtools/contrib/__init__.py
pybedtools/contrib/bigbed.py
pybedtools/contrib/bigwig.py
pybedtools/contrib/intersection_matrix.py
pybedtools/contrib/long_range_interaction.py
pybedtools/contrib/plotting.py
pybedtools/contrib/venn_maker.py
pybedtools/include/bedFile.cpp
pybedtools/include/fileType.cpp
pybedtools/include/gzstream.cpp
pybedtools/test/__init__.py
pybedtools/test/genomepy_integration.py
pybedtools/test/regression_tests.py
pybedtools/test/test_1.py
pybedtools/test/test_cbedtools.py
pybedtools/test/test_contrib.py
pybedtools/test/test_gzip_support.py
pybedtools/test/test_helpers.py
pybedtools/test/test_issues.py
pybedtools/test/test_iter.py
pybedtools/test/test_len_leak.py
pybedtools/test/test_pathlib.py
pybedtools/test/tfuncs.py
pybedtools/test/data/1000genomes-example.vcf
pybedtools/test/data/1000genomes-example.vcf.gz
pybedtools/test/data/164.gtf
pybedtools/test/data/BEAF_Kc_Bushey_2009.bed
pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed
pybedtools/test/data/CTCF_Kc_Bushey_2009.bed
pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed
pybedtools/test/data/Cp190_Kc_Bushey_2009.bed
pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed
pybedtools/test/data/SuHw_Kc_Bushey_2009.bed
pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed
pybedtools/test/data/__init__.py
pybedtools/test/data/a.bed
pybedtools/test/data/a.bed.gz
pybedtools/test/data/a.bed.gz.tbi
pybedtools/test/data/a.igv_script
pybedtools/test/data/a.links.html
pybedtools/test/data/b.bed
pybedtools/test/data/bedpe.bed
pybedtools/test/data/bedpe2.bed
pybedtools/test/data/c.gff
pybedtools/test/data/d.gff
pybedtools/test/data/democonfig.yaml
pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz
pybedtools/test/data/dm3-chr2L-5M.gff.gz
pybedtools/test/data/example.narrowPeak
pybedtools/test/data/exons.gff
pybedtools/test/data/expand_test.bed
pybedtools/test/data/gdc.1.100.bam
pybedtools/test/data/gdc.1.100.bam.bai
pybedtools/test/data/gdc.50.200.bam
pybedtools/test/data/gdc.50.200.bam.bai
pybedtools/test/data/gdc.bam
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pybedtools/test/data/gdc.cram
pybedtools/test/data/gdc.gff
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pybedtools/test/data/gdc.othersort.bam
pybedtools/test/data/gdc.sorted.bam
pybedtools/test/data/gdc.sorted.bam.bai
pybedtools/test/data/genome.fa
pybedtools/test/data/hg19.gff
pybedtools/test/data/hg38-base.bed
pybedtools/test/data/hg38-problem.bed
pybedtools/test/data/issue319.bed
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pybedtools/test/data/issue319.vcf.gz
pybedtools/test/data/issue_121.bam
pybedtools/test/data/m1.bed
pybedtools/test/data/mm9.bed12
pybedtools/test/data/multibamcov_test.bed
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pybedtools/test/data/small.bam
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pybedtools/test/data/test_bedpe.bed
pybedtools/test/data/test_peaks.bed
pybedtools/test/data/test_tsses.bed
pybedtools/test/data/v.vcf
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