../pvacseq/__init__.py
../pvacseq/pvacseq.py
../pvacseq/lib/netmhc_stab.py
../pvacseq/lib/prediction_class.py
../pvacseq/lib/generate_fasta.py
../pvacseq/lib/install_vep_plugin.py
../pvacseq/lib/convert_vcf.py
../pvacseq/lib/binding_filter.py
../pvacseq/lib/__init__.py
../pvacseq/lib/pipeline.py
../pvacseq/lib/download_example_data.py
../pvacseq/lib/valid_alleles.py
../pvacseq/lib/main.py
../pvacseq/lib/call_iedb.py
../pvacseq/lib/parse_output.py
../pvacseq/lib/coverage_filter.py
../pvacseq/lib/combine_parsed_outputs.py
../pvacseq/lib/generate_protein_fasta.py
../pvacseq/lib/net_chop.py
../pvacseq/lib/config_files.py
../pvacseq/server/app.py
../pvacseq/server/__init__.py
../pvacseq/example_data/additional_input_file_list.yaml
../pvacseq/example_data/genes.fpkm_tracking
../pvacseq/example_data/isoforms.fpkm_tracking
../pvacseq/example_data/input.vcf
../pvacseq/example_data/snvs.bam_readcount
../pvacseq/example_data/indels.bam_readcount
../pvacseq/example_data/MHC_Class_I/Test.final.tsv
../pvacseq/example_data/MHC_Class_I/Test.chop.tsv
../pvacseq/example_data/MHC_Class_I/Test.tsv_1-24
../pvacseq/example_data/MHC_Class_I/Test.combined.parsed.tsv
../pvacseq/example_data/MHC_Class_I/Test.stab.tsv
../pvacseq/example_data/MHC_Class_I/Test.tsv
../pvacseq/example_data/MHC_Class_I/Test.filtered.coverage.tsv
../pvacseq/example_data/MHC_Class_I/Test.filtered.binding.tsv
../pvacseq/example_data/MHC_Class_I/tmp/Test_21.fa.split_1-48.key
../pvacseq/example_data/MHC_Class_I/tmp/Test.HLA-E*01:01.10.parsed.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.ann.HLA-E*01:01.9.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.pickpocket.HLA-G*01:09.9.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.pickpocket.HLA-E*01:01.9.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.pickpocket.HLA-E*01:01.10.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.HLA-G*01:09.10.parsed.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.HLA-E*01:01.9.parsed.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test_21.fa.split_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.HLA-G*01:09.9.parsed.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.pickpocket.HLA-G*01:09.10.tsv_1-48
../pvacseq/example_data/MHC_Class_I/tmp/Test.ann.HLA-E*01:01.10.tsv_1-48
../pvacseq/example_data/MHC_Class_I/log/inputs.yml
../pvacseq/example_data/MHC_Class_II/Test.final.tsv
../pvacseq/example_data/MHC_Class_II/Test.chop.tsv
../pvacseq/example_data/MHC_Class_II/Test.tsv_1-24
../pvacseq/example_data/MHC_Class_II/Test.combined.parsed.tsv
../pvacseq/example_data/MHC_Class_II/Test.tsv
../pvacseq/example_data/MHC_Class_II/Test.filtered.coverage.tsv
../pvacseq/example_data/MHC_Class_II/Test.filtered.binding.tsv
../pvacseq/example_data/MHC_Class_II/tmp/Test.H2-IAb.parsed.tsv_1-48
../pvacseq/example_data/MHC_Class_II/tmp/Test_31.fa.split_1-48
../pvacseq/example_data/MHC_Class_II/tmp/Test.nn_align.H2-IAb.tsv_1-48
../pvacseq/example_data/MHC_Class_II/tmp/Test_31.fa.split_1-48.key
../pvacseq/example_data/MHC_Class_II/log/inputs.yml
../pvacseq/VEP_plugins/Wildtype.pm
../pvacseq/iedb_alleles/class_i/netmhccons.tsv
../pvacseq/iedb_alleles/class_i/smm.tsv
../pvacseq/iedb_alleles/class_i/smmpmbec.tsv
../pvacseq/iedb_alleles/class_i/netmhcpan.tsv
../pvacseq/iedb_alleles/class_i/pickpocket.tsv
../pvacseq/iedb_alleles/class_i/ann.tsv
../pvacseq/iedb_alleles/class_ii/smm_align.tsv
../pvacseq/iedb_alleles/class_ii/nn_align.tsv
../pvacseq/iedb_alleles/class_ii/NetMHCIIpan.tsv
../pvacseq/__pycache__/__init__.cpython-36.pyc
../pvacseq/__pycache__/pvacseq.cpython-36.pyc
../pvacseq/lib/__pycache__/netmhc_stab.cpython-36.pyc
../pvacseq/lib/__pycache__/prediction_class.cpython-36.pyc
../pvacseq/lib/__pycache__/generate_fasta.cpython-36.pyc
../pvacseq/lib/__pycache__/install_vep_plugin.cpython-36.pyc
../pvacseq/lib/__pycache__/convert_vcf.cpython-36.pyc
../pvacseq/lib/__pycache__/binding_filter.cpython-36.pyc
../pvacseq/lib/__pycache__/__init__.cpython-36.pyc
../pvacseq/lib/__pycache__/pipeline.cpython-36.pyc
../pvacseq/lib/__pycache__/download_example_data.cpython-36.pyc
../pvacseq/lib/__pycache__/valid_alleles.cpython-36.pyc
../pvacseq/lib/__pycache__/main.cpython-36.pyc
../pvacseq/lib/__pycache__/call_iedb.cpython-36.pyc
../pvacseq/lib/__pycache__/parse_output.cpython-36.pyc
../pvacseq/lib/__pycache__/coverage_filter.cpython-36.pyc
../pvacseq/lib/__pycache__/combine_parsed_outputs.cpython-36.pyc
../pvacseq/lib/__pycache__/generate_protein_fasta.cpython-36.pyc
../pvacseq/lib/__pycache__/net_chop.cpython-36.pyc
../pvacseq/lib/__pycache__/config_files.cpython-36.pyc
../pvacseq/server/__pycache__/app.cpython-36.pyc
../pvacseq/server/__pycache__/__init__.cpython-36.pyc
SOURCES.txt
dependency_links.txt
requires.txt
entry_points.txt
top_level.txt
PKG-INFO
../../../../bin/pvacseq
../../../../bin/pvacseq-ui
