# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Sep  7 11:47:31 2021
# ------------------------------------------------

package:
  name: probeit
  version: v1.9
source:
  patches:
    - fix-setcover-from-path.patch
  sha256: 5d1148b7f2cd927865e755ff457d2aa705de6918131ecb04c51c45053cc473ee
  url: https://github.com/steineggerlab/probeit/archive/refs/tags/v1.9.tar.gz
build:
  number: '0'
  string: py39h8f06ca0_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_1
    - gcc_impl_linux-64 9.4.0 h03d3576_8
    - gcc_linux-64 9.4.0 h391b98a_1
    - gxx_impl_linux-64 9.4.0 h03d3576_8
    - gxx_linux-64 9.4.0 h0316aca_1
    - kernel-headers_linux-64 2.6.32 he073ed8_14
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 9.4.0 hd854feb_8
    - libgcc-ng 11.1.0 hc902ee8_8
    - libgomp 11.1.0 hc902ee8_8
    - libsanitizer 9.4.0 h79bfe98_8
    - libstdcxx-devel_linux-64 9.4.0 hd854feb_8
    - libstdcxx-ng 11.1.0 h56837e0_8
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_14
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - ca-certificates 2021.5.30 ha878542_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libffi 3.3 h58526e2_2
    - libgcc-ng 11.1.0 hc902ee8_8
    - libgomp 11.1.0 hc902ee8_8
    - libstdcxx-ng 11.1.0 h56837e0_8
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1l h7f98852_0
    - pip 21.2.4 pyhd8ed1ab_0
    - python 3.9.7 h49503c6_0_cpython
    - python_abi 3.9 2_cp39
    - readline 8.1 h46c0cb4_0
    - setuptools 57.4.0 py39hf3d152e_0
    - sqlite 3.36.0 h9cd32fc_0
    - tk 8.6.11 h27826a3_1
    - tzdata 2021a he74cb21_1
    - wheel 0.37.0 pyhd8ed1ab_1
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
  run:
    - bedtools
    - biopython
    - genmap
    - libgcc-ng >=9.4.0
    - libstdcxx-ng >=9.4.0
    - mmseqs2 >=13.45111
    - numpy
    - pandas
    - primer3-py
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - seqkit
test:
  commands:
    - setcover > /dev/null
    - probeit > /dev/null
  files:
    - bin/sample/negative.fasta
    - bin/sample/positive.fasta
    - bin/sample/ref.fasta
    - bin/sample/ref.gff
    - bin/sample/str.fasta
about:
  home: https://github.com/steineggerlab/probeit
  license: AGPL-3.0
  summary: 'Probeit: a probe designer for detecting and genotyping pathogen!'
extra:
  copy_test_source_files: true
  final: true
