setup.cfg
setup.py
ppanini/__init__.py
ppanini/annotate_genes.py
ppanini/config.py
ppanini/extract_mapping.py
ppanini/ppanini.py
ppanini/quantify_genes.py
ppanini/utilities.py
ppanini/write_ppanini_table.py
ppanini.egg-info/PKG-INFO
ppanini.egg-info/SOURCES.txt
ppanini.egg-info/dependency_links.txt
ppanini.egg-info/entry_points.txt
ppanini.egg-info/not-zip-safe
ppanini.egg-info/top_level.txt
ppanini/tests/__init__.py
ppanini/tests/basic_tests_annotate_genes.py
ppanini/tests/basic_tests_ppanini.py
ppanini/tests/basic_tests_preppanini.py
ppanini/tests/basic_tests_quantify_genes.py
ppanini/tests/basic_tests_utilities.py
ppanini/tests/ppanini_test.py
ppanini/tests/test_config.py
ppanini/tests/data/__init__.py
ppanini/tests/data/demo.faa
ppanini/tests/data/demo.fna
ppanini/tests/data/demo.gff3
ppanini/tests/data/demo3.fasta
ppanini/tests/data/demo3_ppanini.log
ppanini/tests/data/demo3_ppanini.txt
ppanini/tests/data/demo3_ppanini_centroid_prev_abund.txt
ppanini/tests/data/demo3_ppanini_centroid_prev_abund_dict_all.txt
ppanini/tests/data/demo3_ppanini_centroid_prev_abund_ppanini_score_all.txt
ppanini/tests/data/demo3_ppanini_centroids.fasta
ppanini/tests/data/demo3_ppanini_clusters.uc
ppanini/tests/data/demo3_ppanini_gene_centroids_table.txt
ppanini/tests/data/demo3_ppanini_imp_centroid_prev_abund.txt
ppanini/tests/data/demo_test.faa
ppanini/utils/__init__.py
ppanini/utils/attach_GO.py
ppanini/utils/attach_lineage.py
ppanini/utils/compute_metagenome_clusters.py
ppanini/utils/compute_metagenomic_priority.py
ppanini/utils/create_mapper.py
ppanini/utils/create_mapper_ppanini.py
ppanini/utils/extract_genes_from_fasta.py
ppanini/utils/extract_rows.py
ppanini/utils/graphlan_rings.py
ppanini/utils/imp_centroids_extracter.py
ppanini/utils/imp_centroids_prabXtract.py
ppanini/utils/join_tables.py
ppanini/utils/normalize_table.py
ppanini/utils/parse_chocophlan_table.py
ppanini/utils/plot2vals.py
ppanini/utils/plot_genome_hits.py
ppanini/utils/plot_metagenome_genome.py
ppanini/utils/plot_prevalence_abundance.py
ppanini/utils/plot_roc.py
ppanini/utils/ppanini_visualizer.py
ppanini/utils/ppanini_visualizer_v2.py
ppanini/utils/preppanini.py
ppanini/utils/process_length.py
ppanini/utils/stacked_barplot.py
ppanini/utils/tmp.py
ppanini/utils/write_dictionary.py
ppanini/utils/write_mapper.py