README.rst
setup.cfg
setup.py
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/samtabix/bgzf.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/samtabix/index.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/samtabix/kstring.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/aliType.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/asParse.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/bPlusTree.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/base64.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/basicBed.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/bbiRead.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/bbiWrite.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/bigBed.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/binRange.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/bits.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/bwgQuery.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/bwgValsOnChrom.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/cirTree.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/common.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/dlist.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/dnautil.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/dystring.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/errAbort.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/ffAli.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/hash.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/hmmstats.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/https.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/intExp.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/internet.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/kxTok.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/linefile.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/localmem.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/memalloc.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/obscure.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/osunix.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/pipeline.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/psl.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/rangeTree.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/rbTree.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/sqlList.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/sqlNum.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/tokenizer.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/udc.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/verbose.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/wildcmp.c
/opt/conda/conda-bld/plastid_1560362958350/work/kentUtils/src/lib/zlibFace.c
/opt/conda/conda-bld/plastid_1560362958350/work/plastid/genomics/c_common.c
/opt/conda/conda-bld/plastid_1560362958350/work/plastid/genomics/map_factories.c
/opt/conda/conda-bld/plastid_1560362958350/work/plastid/genomics/roitools.c
kentUtils/README.md
kentUtils/samtabix/AUTHORS
kentUtils/samtabix/COPYING
kentUtils/samtabix/README.md
kentUtils/samtabix/bam.h
kentUtils/samtabix/bam2bcf.h
kentUtils/samtabix/bam_endian.h
kentUtils/samtabix/bgzf.c
kentUtils/samtabix/bgzf.h
kentUtils/samtabix/errmod.h
kentUtils/samtabix/faidx.h
kentUtils/samtabix/index.c
kentUtils/samtabix/kaln.h
kentUtils/samtabix/khash.h
kentUtils/samtabix/klist.h
kentUtils/samtabix/knetfile.h
kentUtils/samtabix/kprobaln.h
kentUtils/samtabix/kseq.h
kentUtils/samtabix/ksort.h
kentUtils/samtabix/kstring.c
kentUtils/samtabix/kstring.h
kentUtils/samtabix/radix.h
kentUtils/samtabix/razf.h
kentUtils/samtabix/sam.h
kentUtils/samtabix/sam_header.h
kentUtils/samtabix/sample.h
kentUtils/samtabix/tabix.h
kentUtils/src/inc/ace.h
kentUtils/src/inc/aliType.h
kentUtils/src/inc/annoAssembly.h
kentUtils/src/inc/annoFilter.h
kentUtils/src/inc/annoFormatTab.h
kentUtils/src/inc/annoFormatter.h
kentUtils/src/inc/annoGrateWig.h
kentUtils/src/inc/annoGrator.h
kentUtils/src/inc/annoGratorQuery.h
kentUtils/src/inc/annoOption.h
kentUtils/src/inc/annoRow.h
kentUtils/src/inc/annoStreamBigBed.h
kentUtils/src/inc/annoStreamBigWig.h
kentUtils/src/inc/annoStreamTab.h
kentUtils/src/inc/annoStreamVcf.h
kentUtils/src/inc/annoStreamer.h
kentUtils/src/inc/apacheLog.h
kentUtils/src/inc/asParse.h
kentUtils/src/inc/axt.h
kentUtils/src/inc/bPlusTree.h
kentUtils/src/inc/bamFile.h
kentUtils/src/inc/bandExt.h
kentUtils/src/inc/base64.h
kentUtils/src/inc/basicBed.h
kentUtils/src/inc/bbiFile.h
kentUtils/src/inc/bigBed.h
kentUtils/src/inc/bigWig.h
kentUtils/src/inc/binRange.h
kentUtils/src/inc/bits.h
kentUtils/src/inc/blastParse.h
kentUtils/src/inc/boxClump.h
kentUtils/src/inc/boxLump.h
kentUtils/src/inc/bwgInternal.h
kentUtils/src/inc/cda.h
kentUtils/src/inc/chain.h
kentUtils/src/inc/chainBlock.h
kentUtils/src/inc/chainConnect.h
kentUtils/src/inc/chainToAxt.h
kentUtils/src/inc/chainToPsl.h
kentUtils/src/inc/cheapcgi.h
kentUtils/src/inc/cirTree.h
kentUtils/src/inc/codebias.h
kentUtils/src/inc/common.h
kentUtils/src/inc/correlate.h
kentUtils/src/inc/crTree.h
kentUtils/src/inc/crudeali.h
kentUtils/src/inc/diGraph.h
kentUtils/src/inc/dlist.h
kentUtils/src/inc/dnaLoad.h
kentUtils/src/inc/dnaMarkov.h
kentUtils/src/inc/dnaMotif.h
kentUtils/src/inc/dnaseq.h
kentUtils/src/inc/dnautil.h
kentUtils/src/inc/dtdParse.h
kentUtils/src/inc/dyOut.h
kentUtils/src/inc/dystring.h
kentUtils/src/inc/elmTree.h
kentUtils/src/inc/emblParse.h
kentUtils/src/inc/ens.h
kentUtils/src/inc/errAbort.h
kentUtils/src/inc/errCatch.h
kentUtils/src/inc/fa.h
kentUtils/src/inc/fieldedTable.h
kentUtils/src/inc/filePath.h
kentUtils/src/inc/flydna.h
kentUtils/src/inc/fof.h
kentUtils/src/inc/fq.h
kentUtils/src/inc/fuzzyFind.h
kentUtils/src/inc/gapCalc.h
kentUtils/src/inc/gdf.h
kentUtils/src/inc/genoFind.h
kentUtils/src/inc/genomeRangeTree.h
kentUtils/src/inc/gfClientLib.h
kentUtils/src/inc/gfPcrLib.h
kentUtils/src/inc/gfWebLib.h
kentUtils/src/inc/gff.h
kentUtils/src/inc/gff3.h
kentUtils/src/inc/gfxPoly.h
kentUtils/src/inc/gifLabel.h
kentUtils/src/inc/hacTree.h
kentUtils/src/inc/hash.h
kentUtils/src/inc/hex.h
kentUtils/src/inc/hgGene.h
kentUtils/src/inc/hgap.h
kentUtils/src/inc/hgdb.h
kentUtils/src/inc/histogram.h
kentUtils/src/inc/hmac.h
kentUtils/src/inc/hmmPfamParse.h
kentUtils/src/inc/hmmstats.h
kentUtils/src/inc/htmlPage.h
kentUtils/src/inc/htmshell.h
kentUtils/src/inc/https.h
kentUtils/src/inc/intValTree.h
kentUtils/src/inc/internet.h
kentUtils/src/inc/itsa.h
kentUtils/src/inc/iupac.h
kentUtils/src/inc/jointalign.h
kentUtils/src/inc/jpegSize.h
kentUtils/src/inc/jsonParse.h
kentUtils/src/inc/jsonWrite.h
kentUtils/src/inc/keys.h
kentUtils/src/inc/knetUdc.h
kentUtils/src/inc/kxTok.h
kentUtils/src/inc/linefile.h
kentUtils/src/inc/localmem.h
kentUtils/src/inc/log.h
kentUtils/src/inc/longToList.h
kentUtils/src/inc/maDbRep.h
kentUtils/src/inc/maToFf.h
kentUtils/src/inc/maf.h
kentUtils/src/inc/mailViaPipe.h
kentUtils/src/inc/md5.h
kentUtils/src/inc/memalloc.h
kentUtils/src/inc/memgfx.h
kentUtils/src/inc/meta.h
kentUtils/src/inc/metaWig.h
kentUtils/src/inc/mime.h
kentUtils/src/inc/net.h
kentUtils/src/inc/nib.h
kentUtils/src/inc/nibTwo.h
kentUtils/src/inc/nt4.h
kentUtils/src/inc/obscure.h
kentUtils/src/inc/oldGff.h
kentUtils/src/inc/oligoTm.h
kentUtils/src/inc/ooc.h
kentUtils/src/inc/options.h
kentUtils/src/inc/pairHmm.h
kentUtils/src/inc/paraFetch.h
kentUtils/src/inc/patSpace.h
kentUtils/src/inc/peakCluster.h
kentUtils/src/inc/phyloTree.h
kentUtils/src/inc/pipeline.h
kentUtils/src/inc/portable.h
kentUtils/src/inc/psGfx.h
kentUtils/src/inc/psPoly.h
kentUtils/src/inc/pscmGfx.h
kentUtils/src/inc/psl.h
kentUtils/src/inc/pslTbl.h
kentUtils/src/inc/pslTransMap.h
kentUtils/src/inc/pthreadWrap.h
kentUtils/src/inc/qa.h
kentUtils/src/inc/quickHeap.h
kentUtils/src/inc/quotedP.h
kentUtils/src/inc/ra.h
kentUtils/src/inc/raToStruct.h
kentUtils/src/inc/rainbow.h
kentUtils/src/inc/rangeTree.h
kentUtils/src/inc/rbTree.h
kentUtils/src/inc/regexHelper.h
kentUtils/src/inc/repMask.h
kentUtils/src/inc/rle.h
kentUtils/src/inc/rnautil.h
kentUtils/src/inc/rql.h
kentUtils/src/inc/rudp.h
kentUtils/src/inc/scoreWindow.h
kentUtils/src/inc/seg.h
kentUtils/src/inc/seqOut.h
kentUtils/src/inc/seqStats.h
kentUtils/src/inc/shaRes.h
kentUtils/src/inc/sig.h
kentUtils/src/inc/slog.h
kentUtils/src/inc/snof.h
kentUtils/src/inc/snofmake.h
kentUtils/src/inc/spaceSaver.h
kentUtils/src/inc/spacedColumn.h
kentUtils/src/inc/spacedSeed.h
kentUtils/src/inc/splatAli.h
kentUtils/src/inc/splix.h
kentUtils/src/inc/sqlList.h
kentUtils/src/inc/sqlNum.h
kentUtils/src/inc/subText.h
kentUtils/src/inc/sufa.h
kentUtils/src/inc/sufx.h
kentUtils/src/inc/supStitch.h
kentUtils/src/inc/synQueue.h
kentUtils/src/inc/tabRow.h
kentUtils/src/inc/textOut.h
kentUtils/src/inc/tokenizer.h
kentUtils/src/inc/trans3.h
kentUtils/src/inc/trix.h
kentUtils/src/inc/twoBit.h
kentUtils/src/inc/udc.h
kentUtils/src/inc/unfin.h
kentUtils/src/inc/vGfx.h
kentUtils/src/inc/vcf.h
kentUtils/src/inc/vcfBits.h
kentUtils/src/inc/verbose.h
kentUtils/src/inc/wormdna.h
kentUtils/src/inc/xAli.h
kentUtils/src/inc/xa.h
kentUtils/src/inc/xap.h
kentUtils/src/inc/xenalign.h
kentUtils/src/inc/xmlEscape.h
kentUtils/src/inc/xp.h
kentUtils/src/inc/zlibFace.h
kentUtils/src/lib/README
kentUtils/src/lib/aliType.c
kentUtils/src/lib/asParse.c
kentUtils/src/lib/bPlusTree.c
kentUtils/src/lib/base64.c
kentUtils/src/lib/basicBed.c
kentUtils/src/lib/bbiRead.c
kentUtils/src/lib/bbiWrite.c
kentUtils/src/lib/bigBed.c
kentUtils/src/lib/binRange.c
kentUtils/src/lib/bits.c
kentUtils/src/lib/bwgQuery.c
kentUtils/src/lib/bwgValsOnChrom.c
kentUtils/src/lib/cirTree.c
kentUtils/src/lib/common.c
kentUtils/src/lib/dlist.c
kentUtils/src/lib/dnautil.c
kentUtils/src/lib/dystring.c
kentUtils/src/lib/errAbort.c
kentUtils/src/lib/ffAli.c
kentUtils/src/lib/hash.c
kentUtils/src/lib/hmmstats.c
kentUtils/src/lib/https.c
kentUtils/src/lib/intExp.c
kentUtils/src/lib/internet.c
kentUtils/src/lib/kxTok.c
kentUtils/src/lib/linefile.c
kentUtils/src/lib/localmem.c
kentUtils/src/lib/memalloc.c
kentUtils/src/lib/obscure.c
kentUtils/src/lib/osunix.c
kentUtils/src/lib/pipeline.c
kentUtils/src/lib/psl.c
kentUtils/src/lib/rangeTree.c
kentUtils/src/lib/rbTree.c
kentUtils/src/lib/sqlList.c
kentUtils/src/lib/sqlNum.c
kentUtils/src/lib/tokenizer.c
kentUtils/src/lib/udc.c
kentUtils/src/lib/verbose.c
kentUtils/src/lib/wildcmp.c
kentUtils/src/lib/zlibFace.c
plastid/__init__.py
plastid.egg-info/PKG-INFO
plastid.egg-info/SOURCES.txt
plastid.egg-info/dependency_links.txt
plastid.egg-info/entry_points.txt
plastid.egg-info/not-zip-safe
plastid.egg-info/requires.txt
plastid.egg-info/top_level.txt
plastid/bin/__init__.py
plastid/bin/counts_in_region.py
plastid/bin/crossmap.py
plastid/bin/cs.py
plastid/bin/findjuncs.py
plastid/bin/get_count_vectors.py
plastid/bin/gff_parent_types.py
plastid/bin/make_wiggle.py
plastid/bin/metagene.py
plastid/bin/phase_by_size.py
plastid/bin/psite.py
plastid/bin/reformat_transcripts.py
plastid/bin/slidejuncs.py
plastid/bin/test_table_equality.py
plastid/genomics/__init__.py
plastid/genomics/c_common.pxd
plastid/genomics/c_common.pyx
plastid/genomics/genome_array.py
plastid/genomics/genome_hash.py
plastid/genomics/map_factories.pxd
plastid/genomics/map_factories.pyx
plastid/genomics/roitools.pxd
plastid/genomics/roitools.pyx
plastid/genomics/seqtools.py
plastid/genomics/splicing.py
plastid/plotting/__init__.py
plastid/plotting/colors.py
plastid/plotting/plots.py
plastid/plotting/plotutils.py
plastid/readers/__init__.py
plastid/readers/autosql.py
plastid/readers/bbifile.c
plastid/readers/bbifile.pxd
plastid/readers/bbifile.pyx
plastid/readers/bed.py
plastid/readers/bigbed.c
plastid/readers/bigbed.pxd
plastid/readers/bigbed.pyx
plastid/readers/bigwig.c
plastid/readers/bigwig.pxd
plastid/readers/bigwig.pyx
plastid/readers/bowtie.py
plastid/readers/common.py
plastid/readers/gff.py
plastid/readers/gff_tokens.py
plastid/readers/psl.py
plastid/readers/wiggle.py
plastid/test/__init__.py
plastid/test/ref_files.py
plastid/test/data/__init__.py
plastid/test/data/annotations/__init__.py
plastid/test/data/annotations/py100cds.py
plastid/test/data/annotations/py100transcripts.py
plastid/test/data/annotations/juncs/__init__.py
plastid/test/data/command_line/__init__.py
plastid/test/data/command_line/gen_count_vectors/__init__.py
plastid/test/data/ebwt/__init__.py
plastid/test/data/mini/__init__.py
plastid/test/data/mini/align/__init__.py
plastid/test/data/mini/bed/__init__.py
plastid/test/data/mini/count_vectors/__init__.py
plastid/test/data/mini/fasta/__init__.py
plastid/test/data/mini/juncs/__init__.py
plastid/test/data/mini/wig/__init__.py
plastid/test/functional/__init__.py
plastid/test/functional/base.py
plastid/test/functional/test_counts_in_region.py
plastid/test/functional/test_crossmap.py
plastid/test/functional/test_cs.py
plastid/test/functional/test_findjuncs.py
plastid/test/functional/test_get_count_vectors.py
plastid/test/functional/test_gff_parent_types.py
plastid/test/functional/test_make_wiggle.py
plastid/test/functional/test_metagene.py
plastid/test/functional/test_phase_by_size.py
plastid/test/functional/test_psite.py
plastid/test/functional/test_reformat_transcripts.py
plastid/test/functional/test_slidejuncs.py
plastid/test/functional/test_test_table_equality.py
plastid/test/unit/__init__.py
plastid/test/unit/bin/__init__.py
plastid/test/unit/bin/test_crossmap.py
plastid/test/unit/bin/test_metagene.py
plastid/test/unit/bin/test_slidejuncs.py
plastid/test/unit/bin/test_test_table_equality.py
plastid/test/unit/genomics/__init__.py
plastid/test/unit/genomics/test_genome_array.py
plastid/test/unit/genomics/test_genome_hash.py
plastid/test/unit/genomics/test_map_factories.py
plastid/test/unit/genomics/test_roitools.py
plastid/test/unit/genomics/test_seqtools.py
plastid/test/unit/genomics/test_splicing.py
plastid/test/unit/readers/__init__.py
plastid/test/unit/readers/test_autosql.py
plastid/test/unit/readers/test_bed.py
plastid/test/unit/readers/test_bigbed.py
plastid/test/unit/readers/test_bigwig.py
plastid/test/unit/readers/test_common.py
plastid/test/unit/readers/test_genbank.py
plastid/test/unit/readers/test_gff.py
plastid/test/unit/readers/test_gff_tokens.py
plastid/test/unit/readers/test_psl.py
plastid/test/unit/readers/test_wiggle.py
plastid/test/unit/util/__init__.py
plastid/test/unit/util/test_uniquefifo.py
plastid/test/unit/util/io/__init__.py
plastid/test/unit/util/io/test_binary.py
plastid/test/unit/util/io/test_filters.py
plastid/test/unit/util/io/test_openers.py
plastid/test/unit/util/scriptlib/__init__.py
plastid/test/unit/util/scriptlib/test_argparsers.py
plastid/test/unit/util/scriptlib/test_help_formatters.py
plastid/test/unit/util/services/__init__.py
plastid/test/unit/util/services/test_colors.py
plastid/test/unit/util/services/test_decorators.py
plastid/test/unit/util/services/test_lists.py
plastid/test/unit/util/services/test_misc.py
plastid/test/unit/util/services/test_sets.py
plastid/util/__init__.py
plastid/util/unique_fifo.py
plastid/util/io/__init__.py
plastid/util/io/binary.py
plastid/util/io/filters.py
plastid/util/io/openers.py
plastid/util/scriptlib/__init__.py
plastid/util/scriptlib/argparsers.py
plastid/util/scriptlib/help_formatters.py
plastid/util/scriptlib/template.py
plastid/util/services/__init__.py
plastid/util/services/decorators.py
plastid/util/services/exceptions.py
plastid/util/services/lists.py
plastid/util/services/mini2to3.py
plastid/util/services/misc.py
plastid/util/services/sets.py