# All PlantTribes confiuration files should be placed in this loacation - "PlanTribes/config"

# Dependent software configuration file: 
plantTribes.config

# Targeted gene family assembly configuration files
22Gv1.0.gfam.targetOrthos.config (GFam angiosperms clusters, version 1.0) = 22Gv1.0
22Gv1.0.orthofinder.targetOrthos.config (OrthoFinder angiosperms clusters, version 1.0) = 22Gv1.0
22Gv1.0.orthomcl.targetOrthos.config (OrthoMCL angiosperms clusters, version 1.0) = 22Gv1.0
22Gv1.1.gfam.targetOrthos.config (GFam angiosperms clusters, version 1.1) = 22Gv1.1
22Gv1.1.orthofinder.targetOrthos.config (OrthoFinder angiospeCrms clusters, version 1.1) = 22Gv1.1
22Gv1.1.orthomcl.targetOrthos.config (OrthoMCL angiosperms clusters, version 1.1) = 22Gv1.1

# Single copy orthogroup custom selection configuration files
22Gv1.0.singleCopy.config (Angiosperms clusters, version 1.0) = 22Gv1.0
22Gv1.1.singleCopy.config (Angiosperms clusters, version 1.1) = 22Gv1.1

# Orthogroup phylogeny taxa rooting order
22Gv1.0.rootingOrder.config (Angiosperms clusters, version 1.0) = 22Gv1.0
22Gv1.1.rootingOrder.config (Angiosperms clusters, version 1.1) = 22Gv1.1

# codeml control file template to for the KaKsAnalysis pipeline
codeml.ctl.args - codeml control file template



