bin/addRNAoptions.pl
bin/pKiss
bin/pKiss_enforce
bin/pKiss_enforce_window
bin/pKiss_eval
bin/pKiss_local
bin/pKiss_local_window
bin/pKiss_mfe
bin/pKiss_mfe_window
bin/pKiss_probs
bin/pKiss_probs_window
bin/pKiss_shapes
bin/pKiss_shapes_window
bin/pKiss_subopt
bin/pKiss_subopt_window
lib/foldGrammars/CMs.pm
lib/foldGrammars/ClusterSettings.pm
lib/foldGrammars/IO.pm
lib/foldGrammars/NewCollection.pm
lib/foldGrammars/RNAcast.pm
lib/foldGrammars/RapidShapes.pm
lib/foldGrammars/References.pm
lib/foldGrammars/Settings.pm
lib/foldGrammars/Structure.pm
lib/foldGrammars/Testing.pm
lib/foldGrammars/Utils.pm
