# This file created by conda-build 2.1.16
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Oct 27 07:23:36 2017
# ------------------------------------------------

package:
    name: pindel
    version: 0.2.5b9
source:
    fn: pindel-b706fba.tar.gz
    patches:
        - htslib16.diff
    sha256: d626260986270efce5a947d03785781c8fddfc922f41279cf9d4bd504c4e3690
    url: https://github.com/genome/pindel/archive/b706fba.tar.gz
build:
    noarch: ''
    noarch_python: false
    number: '0'
    string: htslib1.6_0
requirements:
    build:
        - krb5 1.14.2 0
        - htslib 1.6 0
        - ca-certificates 2017.7.27.1 0
        - openssl 1.0.2l 0
        - isl 0.12.2 0
        - curl 7.54.1 0
        - mpc 1.0.3 4
        - zlib 1.2.11 0
        - libssh2 1.8.0 1
        - gmp 6.1.2 0
        - mpfr 3.1.5 0
        - gcc 4.8.5 7
        - cloog 0.18.0 0
        - bzip2 1.0.6 1
        - xz 5.2.3 0
    run:
        - htslib 1.6*
        - libgcc
test:
    commands:
        - pindel -h 2>&1 | grep "Pindel version"
        - 'pindel2vcf  --help | grep Example:'
about:
    home: http://gmt.genome.wustl.edu/packages/pindel/index.html
    license: GPLv3
    summary: Pindel can detect breakpoints of large deletions, medium sized insertions,
        inversions, tandem duplications and other structural variants at single-based
        resolution from next-gen sequence data
extra:
    final: true
