ChangeLog
LICENSE
README.md
README.pftools.v2.3.md
bin/2ft
bin/6ft
bin/compare_2_profiles.pl
bin/fasta_to_fastq.pl
bin/gtop
bin/htop
bin/make_iupac_cmp.pl
bin/pfcalibrateV3
bin/pfdump
bin/pfemit
bin/pfindex
bin/pfmake
bin/pfpam
bin/pfscale
bin/pfscan
bin/pfscanV3
bin/pfsearch
bin/pfsearchV3
bin/pfw
bin/ps_scan.pl
bin/psa2msa
bin/ptof
bin/ptoh
bin/scramble_fasta.pl
bin/sort_fasta.pl
bin/split_profile_file.pl
share/data/calibration/reversed.seq
share/data/calibration/window20.seq
share/data/cmp/blosum100.cmp
share/data/cmp/blosum30.cmp
share/data/cmp/blosum45.cmp
share/data/cmp/blosum50.cmp
share/data/cmp/blosum62.cmp
share/data/cmp/blosum65.cmp
share/data/cmp/blosum80.cmp
share/data/cmp/dna_50_40.cmp
share/data/cmp/gonnet.cmp
share/data/cmp/iupac_50_40.cmp
share/data/cmp/pam120.cmp
share/data/cmp/pam160.cmp
share/data/cmp/pam200.cmp
share/data/cmp/pam220.cmp
share/data/cmp/pam250.cmp
share/data/cmp/pam30.cmp
share/data/cmp/pam40.cmp
share/data/cmp/pam400.cmp
share/data/cmp/pam80.cmp
share/data/familyProfile/DoubleProfile.prf
share/data/familyProfile/sequence.seq
share/data/familyProfile/sh2.prf
share/data/reverse/forward.msa
share/data/reverse/forward.prf
share/data/reverse/forward.seq
share/data/reverse/forward_dna.seq
share/data/reverse/forward_dna.seq_0.dat.orig
share/data/reverse/forward_dna_shift5.seq
share/data/reverse/reverse.msa
share/data/reverse/reverse.prf
share/data/reverse/reverse.seq
share/doc/btt129.pdf
share/doc/posterPfsearchV3SIBdays2013_v0.3.pdf
share/doc/profile.pdf
share/doc/profile.txt
share/examples/16S.prf
share/examples/CVPBR322.embl
share/examples/GTPA_HUMAN.dat
share/examples/MYSA_HUMAN
share/examples/PS00741_PS50010.dat
share/examples/R76849.seq
share/examples/RF00177.msa
share/examples/SRR9619541.sample.fastq
share/examples/Toolbox.pm
share/examples/VAV_HUMAN.seq
share/examples/VAV_RAT.seq
share/examples/all.prf
share/examples/all.seq
share/examples/coils.prf
share/examples/ecp.prf
share/examples/hiv.fastq
share/examples/hiv.prf
share/examples/htop_issue.hmm
share/examples/patterns/ambiguities.hit
share/examples/patterns/ambiguities_excluded.hit
share/examples/patterns/anchorC.hit
share/examples/patterns/anchorN.hit
share/examples/patterns/fully_defined.hit
share/examples/patterns/multiple_matches.hit
share/examples/patterns/repetition.hit
share/examples/patterns/repetition_range.hit
share/examples/patterns/undefined.hit
share/examples/pfam_sh3.hmm
share/examples/prosite13.prf
share/examples/rand_dna.prf
share/examples/rand_dna.seq
share/examples/sample.fastq
share/examples/score.lis
share/examples/sh2.prf
share/examples/sh3.gpr
share/examples/sh3.msf
share/examples/sh3.prf
share/examples/sh3.seq
share/examples/standard.random
share/examples/test_V2.sh
share/examples/test_V3.out
share/examples/test_V3.sh
share/examples/test_V3_output.sh.cmake
share/examples/test_pfsearchV3_iupac.pl
share/examples/test_pfsearchV3_pattern-regexp.sh.cmake
share/examples/test_scan_search.pl
share/man/man1/2ft.1
share/man/man1/6ft.1
share/man/man1/gtop.1
share/man/man1/htop.1
share/man/man1/pfmake.1
share/man/man1/pfscale.1
share/man/man1/pfscan.1
share/man/man1/pfsearch.1
share/man/man1/pfsearchV2.1
share/man/man1/pfw.1
share/man/man1/psa2msa.1
share/man/man1/ptof.1
share/man/man1/ptoh.1
share/man/man5/psa.5
share/man/man5/xpsa.5
