Bio::TreeIO::nexml(3)

NAME
Bio::TreeIO::nexml - A TreeIO driver module for parsing NeXML tree files

SYNOPSIS
  use Bio::TreeIO;
  my $in = Bio::TreeIO->new(-file => 'data.nexml' -format => 'Nexml');
  while( my $tree = $in->next_tree ) {
  }

DESCRIPTION
This is a driver module for parsing tree data in a NeXML format. For more information on NeXML, visit <http://www.nexml.org>.

FEEDBACK

  Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

  Support
Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Chase Miller
Email chmille4@gmail.com

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  next_tree
 Title   : next_tree
 Usage   : my $tree = $treeio->next_tree
 Function: Gets the next tree in the stream
 Returns : L<Bio::Tree::TreeI>
 Args    : none

  doc
 Title   : doc
 Usage   : $treeio->doc
 Function: Returns the biophylo nexml document object
 Returns : Bio::Phylo::Project
 Args    : none or Bio::Phylo::Project object

  rewind
 Title   : rewind
 Usage   : $treeio->rewind
 Function: Resets the stream
 Returns : none
 Args    : none

  write_tree
 Title   : write_tree
 Usage   : $treeio->write_tree($tree);
 Function: Writes a tree onto the stream
 Returns : none
 Args    : L<Bio::Tree::TreeI>