CHANGELOG.org
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MANIFEST.in
Makefile
README.md
circle.yml
setup.cfg
setup.py
bin/updateXSDs.py
doc/Makefile
doc/conf.py
doc/index.rst
doc/modules.rst
doc/pbcore.chemistry.rst
doc/pbcore.data.rst
doc/pbcore.io.dataset.rst
doc/pbcore.io.rst
doc/pbcore.model.rst
doc/pbcore.rst
doc/pbcore.util.rst
doc/pacbio-theme/theme.conf
doc/pacbio-theme/static/headerGradient.jpg
doc/pacbio-theme/static/pacbio.css
doc/pacbio-theme/static/pacbioLogo.png
doc/pacbio-theme/static/pygments.css
pbcore/__init__.py
pbcore/__init__.pyc
pbcore/sequence.py
pbcore/sequence.pyc
pbcore.egg-info/PKG-INFO
pbcore.egg-info/SOURCES.txt
pbcore.egg-info/dependency_links.txt
pbcore.egg-info/entry_points.txt
pbcore.egg-info/not-zip-safe
pbcore.egg-info/requires.txt
pbcore.egg-info/top_level.txt
pbcore/chemistry/__init__.py
pbcore/chemistry/__init__.pyc
pbcore/chemistry/chemistry.py
pbcore/chemistry/chemistry.pyc
pbcore/chemistry/resources/mapping.xml
pbcore/data/1.4_bas_files.fofn
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pbcore/data/2.1_ccs_files.fofn
pbcore/data/2.3_bax_files.fofn
pbcore/data/Fluidigm_human_amplicons.fasta
pbcore/data/Fluidigm_human_amplicons.fasta.fai
pbcore/data/Fluidigm_human_amplicons_tiny.fasta
pbcore/data/Makefile
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pbcore/data/aligned_reads_1.cmp.h5
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pbcore/data/bc_files.fofn
pbcore/data/blasr-output.m4
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pbcore/data/empty.aligned_subreads.bam
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pbcore/data/lambdaNEB.fa
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pbcore/data/datasets/CollectionMetadata.xml
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pbcore/data/datasets/alignment.dataset.xml
pbcore/data/datasets/barcode.dataset.xml
pbcore/data/datasets/ccsaligned.dataset.xml
pbcore/data/datasets/ccsread.dataset.xml
pbcore/data/datasets/contig.dataset.xml
pbcore/data/datasets/empty_lambda.aligned.bam
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pbcore/data/datasets/fofn.fofn
pbcore/data/datasets/hdfsubread_dataset.xml
pbcore/data/datasets/lambda.alignmentset.xml
pbcore/data/datasets/lambda.referenceset.xml
pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam
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pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml
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pbcore/data/datasets/pbalchemysim1.hdfsubreadset.xml
pbcore/data/datasets/pbalchemysim1.pbalign.bam
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pbcore/data/datasets/pbalchemysim1.subreads.bam
pbcore/data/datasets/pbalchemysim1.subreads.bam.bai
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pbcore/data/datasets/pbalchemysim1.subreadset.xml
pbcore/data/datasets/reference.dataset.xml
pbcore/data/datasets/subread.dataset.xml
pbcore/data/datasets/subreadSetWithStats.xml
pbcore/data/datasets/transformed_rs_subread.dataset.xml
pbcore/io/BarcodeH5Reader.py
pbcore/io/BarcodeH5Reader.pyc
pbcore/io/BasH5IO.py
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pbcore/io/FastaIO.py
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pbcore/io/FastqIO.py
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pbcore/io/FofnIO.py
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pbcore/io/GffIO.py
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pbcore/io/VcfIO.py
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pbcore/io/_utils.py
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pbcore/io/base.py
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pbcore/io/opener.py
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pbcore/io/rangeQueries.py
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pbcore/io/align/BamAlignment.py
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pbcore/io/align/BamIO.py
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pbcore/io/align/BlasrIO.py
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pbcore/io/align/CmpH5IO.py
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pbcore/io/align/PacBioBamIndex.py
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pbcore/io/align/_AlignmentMixin.py
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pbcore/io/align/_BamSupport.py
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pbcore/io/align/__init__.py
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pbcore/io/align/_bgzf.py
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pbcore/io/dataset/DataSetErrors.py
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pbcore/io/dataset/DataSetIO.py
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pbcore/io/dataset/DataSetMembers.py
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pbcore/io/dataset/DataSetMetaTypes.py
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pbcore/io/dataset/DataSetReader.py
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pbcore/io/dataset/DataSetValidator.py
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pbcore/io/dataset/DataSetWriter.py
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pbcore/io/dataset/__init__.py
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pbcore/io/dataset/utils.py
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pbcore/io/dataset/pyxb/DataSetXsd.py
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pbcore/io/dataset/pyxb/_pbsample.py
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pbcore/model/__init__.py
pbcore/model/__init__.pyc
pbcore/model/baseRegions.py
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pbcore/util/Process.py
pbcore/util/Process.pyc
pbcore/util/ToolRunner.py
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pbcore/util/__init__.pyc
pbcore/util/decorators.py
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pbcore/util/statistics.py
tests/test_pbcore_data.py
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tests/test_pbcore_io_AlnFileReaders.py
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