mpi-scheduler --bootstrap --msa /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_all/pargenes-hpc/parse_run/results/msa2_fasta/msa2_fasta.raxml.rba --model F81+G4 --prefix /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_all/pargenes-hpc/mlsearch_run/bootstraps/msa2_fasta/msa2_fasta_bs2 --threads 1 --seed 3 --bs-trees 1 

RAxML-NG v. 0.9.0 released on 20.05.2019 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

RAxML-NG was called at 25-Dec-2020 10:13:41 as follows:

mpi-scheduler --bootstrap --msa /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_all/pargenes-hpc/parse_run/results/msa2_fasta/msa2_fasta.raxml.rba --model F81+G4 --prefix /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_all/pargenes-hpc/mlsearch_run/bootstraps/msa2_fasta/msa2_fasta_bs2 --threads 1 --seed 3 --bs-trees 1

Analysis options:
  run mode: Bootstrapping
  start tree(s): 
  bootstrap replicates: 1
  random seed: 3
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: NONE/sequential

WARNING: The model you specified on the command line (F81+G4) will be ignored 
         since the binary MSA file already contains a model definition.
         If you want to change the model, please re-run RAxML-NG 
         with the original PHYLIP/FASTA alignment and --redo option.

[00:00:00] Loading binary alignment from file: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_all/pargenes-hpc/parse_run/results/msa2_fasta/msa2_fasta.raxml.rba
[00:00:00] Alignment comprises 10 taxa, 1 partitions and 50 patterns

Partition 0: noname
Model: F81+FO+G4m
Alignment sites / patterns: 50 / 50
Gaps: 32.00 %
Invariant sites: 0.00 %


[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 50 / 800
[00:00:00] Starting bootstrapping analysis with 1 replicates.

[00:00:00 -594.438816] Initial branch length optimization
[00:00:00 -478.087475] Model parameter optimization (eps = 10.000000)
[00:00:00 -474.684209] AUTODETECT spr round 1 (radius: 5)
[00:00:00 -470.982618] AUTODETECT spr round 2 (radius: 10)
[00:00:00 -470.892160] SPR radius for FAST iterations: 5 (autodetect)
[00:00:00 -470.892160] Model parameter optimization (eps = 3.000000)
[00:00:00 -470.605459] FAST spr round 1 (radius: 5)
[00:00:00 -467.830155] FAST spr round 2 (radius: 5)
[00:00:00 -467.814719] Model parameter optimization (eps = 1.000000)
[00:00:00 -467.624136] SLOW spr round 1 (radius: 5)
[00:00:00 -467.539283] SLOW spr round 2 (radius: 10)
[00:00:00 -467.538206] Model parameter optimization (eps = 0.100000)

[00:00:00] Bootstrap tree #1, logLikelihood: -467.512091


Bootstrap trees saved to: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_all/pargenes-hpc/mlsearch_run/bootstraps/msa2_fasta/msa2_fasta_bs2.raxml.bootstraps

Execution log saved to: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_all/pargenes-hpc/mlsearch_run/bootstraps/msa2_fasta/msa2_fasta_bs2.raxml.log

Analysis started: 25-Dec-2020 10:13:41 / finished: 25-Dec-2020 10:13:42

Elapsed time: 0.284 seconds

