
RAxML-NG v. 0.9.0 released on 20.05.2019 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

RAxML-NG was called at 25-Dec-2020 10:13:48 as follows:

/opt/conda/conda-bld/pargenes_1608889558035/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/pargenes_src/../pargenes_binaries/raxml-ng --bootstrap --msa /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_bootstraps/pargenes-hpc-debug/parse_run/results/msa4_fasta/msa4_fasta.raxml.rba --model GTR+G --prefix /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_bootstraps/pargenes-hpc-debug/mlsearch_run/bootstraps/msa4_fasta/msa4_fasta_bs1 --threads 1 --seed 2 --bs-trees 1

Analysis options:
  run mode: Bootstrapping
  start tree(s): 
  bootstrap replicates: 1
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: NONE/sequential

WARNING: The model you specified on the command line (GTR+G) will be ignored 
         since the binary MSA file already contains a model definition.
         If you want to change the model, please re-run RAxML-NG 
         with the original PHYLIP/FASTA alignment and --redo option.

[00:00:00] Loading binary alignment from file: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_bootstraps/pargenes-hpc-debug/parse_run/results/msa4_fasta/msa4_fasta.raxml.rba
[00:00:00] Alignment comprises 4 taxa, 1 partitions and 38 patterns

Partition 0: noname
Model: GTR+FO+G4m
Alignment sites / patterns: 47 / 38
Gaps: 31.38 %
Invariant sites: 44.68 %


[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 38 / 608
[00:00:00] Starting bootstrapping analysis with 1 replicates.

[00:00:00 -206.315142] Initial branch length optimization
[00:00:00 -181.052562] Model parameter optimization (eps = 10.000000)
[00:00:00 -129.825267] SPR radius for FAST iterations: 5 (autodetect)
[00:00:00 -129.825267] Model parameter optimization (eps = 3.000000)
[00:00:00 -129.742681] FAST spr round 1 (radius: 5)
[00:00:00 -128.269375] FAST spr round 2 (radius: 5)
[00:00:00 -128.269375] Model parameter optimization (eps = 1.000000)
[00:00:00 -126.962110] SLOW spr round 1 (radius: 5)
[00:00:00 -126.962100] Model parameter optimization (eps = 0.100000)

[00:00:00] Bootstrap tree #1, logLikelihood: -126.955726


Bootstrap trees saved to: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_bootstraps/pargenes-hpc-debug/mlsearch_run/bootstraps/msa4_fasta/msa4_fasta_bs1.raxml.bootstraps

Execution log saved to: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_bootstraps/pargenes-hpc-debug/mlsearch_run/bootstraps/msa4_fasta/msa4_fasta_bs1.raxml.log

Analysis started: 25-Dec-2020 10:13:48 / finished: 25-Dec-2020 10:13:48

Elapsed time: 0.098 seconds

