mpi-scheduler --msa /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/parse_run/results/msa2_fasta/msa2_fasta.raxml.rba --model F81+G4 --prefix /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/mlsearch_run/results/msa2_fasta/msa2_fasta --threads 1 --tree rand{1} --seed 1 

RAxML-NG v. 0.9.0 released on 20.05.2019 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

RAxML-NG was called at 25-Dec-2020 10:13:36 as follows:

mpi-scheduler --msa /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/parse_run/results/msa2_fasta/msa2_fasta.raxml.rba --model F81+G4 --prefix /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/mlsearch_run/results/msa2_fasta/msa2_fasta --threads 1 --tree rand{1} --seed 1

Analysis options:
  run mode: ML tree search
  start tree(s): random (1)
  random seed: 1
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: NONE/sequential

WARNING: The model you specified on the command line (F81+G4) will be ignored 
         since the binary MSA file already contains a model definition.
         If you want to change the model, please re-run RAxML-NG 
         with the original PHYLIP/FASTA alignment and --redo option.

[00:00:00] Loading binary alignment from file: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/parse_run/results/msa2_fasta/msa2_fasta.raxml.rba
[00:00:00] Alignment comprises 10 taxa, 1 partitions and 50 patterns

Partition 0: noname
Model: F81+FO+G4m
Alignment sites / patterns: 50 / 50
Gaps: 32.00 %
Invariant sites: 0.00 %


[00:00:00] Generating 1 random starting tree(s) with 10 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 50 / 800

Starting ML tree search with 1 distinct starting trees

[00:00:00 -567.003588] Initial branch length optimization
[00:00:00 -467.513233] Model parameter optimization (eps = 10.000000)
[00:00:00 -463.125013] AUTODETECT spr round 1 (radius: 5)
[00:00:00 -462.570987] AUTODETECT spr round 2 (radius: 10)
[00:00:00 -462.562148] SPR radius for FAST iterations: 5 (autodetect)
[00:00:00 -462.562148] Model parameter optimization (eps = 3.000000)
[00:00:00 -462.543921] FAST spr round 1 (radius: 5)
[00:00:00 -461.504492] FAST spr round 2 (radius: 5)
[00:00:00 -460.520072] FAST spr round 3 (radius: 5)
[00:00:00 -460.488999] Model parameter optimization (eps = 1.000000)
[00:00:00 -460.463087] SLOW spr round 1 (radius: 5)
[00:00:00 -460.462656] SLOW spr round 2 (radius: 10)
[00:00:00 -460.462536] Model parameter optimization (eps = 0.100000)

[00:00:00] ML tree search #1, logLikelihood: -460.455754


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: GAMMA (4 cats, mean),  alpha: 0.901501 (ML),  weights&rates: (0.250000,0.116906) (0.250000,0.445003) (0.250000,0.981548) (0.250000,2.456543) 
   Base frequencies (ML): 0.235579 0.195819 0.267197 0.301405 
   Substitution rates (model): 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 


Final LogLikelihood: -460.455754

AIC score: 962.911507 / AICc score: 995.911507 / BIC score: 1003.063990
Free parameters (model + branch lengths): 21

Best ML tree saved to: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/mlsearch_run/results/msa2_fasta/msa2_fasta.raxml.bestTree
Optimized model saved to: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/mlsearch_run/results/msa2_fasta/msa2_fasta.raxml.bestModel

Execution log saved to: /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_modeltest/pargenes-hpc/mlsearch_run/results/msa2_fasta/msa2_fasta.raxml.log

Analysis started: 25-Dec-2020 10:13:36 / finished: 25-Dec-2020 10:13:37

Elapsed time: 0.328 seconds

