########################
#    PARGENES v1.2.0   #
########################

ParGenes was called as follow:
/opt/conda/conda-bld/pargenes_1608889558035/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/pargenes.py -a /opt/conda/conda-bld/pargenes_1608889558035/work/tests/smalldata/fasta_files -o /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes -r /opt/conda/conda-bld/pargenes_1608889558035/work/tests/smalldata/raxml_global_options.txt -c 4 -s 3 -p 3 --scheduler fork

[0:00:00] end of MSAs initializations
Calling mpi-scheduler: /opt/conda/conda-bld/pargenes_1608889558035/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/pargenes_src/../pargenes_binaries/mpi-scheduler --fork-scheduler 4 /opt/conda/conda-bld/pargenes_1608889558035/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/pargenes_src/../pargenes_binaries/raxml-ng /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes/parse_run/parse_command.txt /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes/parse_run --threads-arg --threads
Logs will be redirected to /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes/parse_run/logs.txt
  Number of families: 5
  Average number of taxa: 4
  Max number of taxa: 10
  Average number of sites: 33
  Max number of sites: 50
  Recommended MAXIMUM number of cores: 1
[Warning] [0:00:00] Found 1 invalid MSAs (see /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes/invalid_msas.txt)
[0:00:00] end of parsing mpi-scheduler run
[0:00:00] end of anlysing parsing results
Calling mpi-scheduler: /opt/conda/conda-bld/pargenes_1608889558035/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/pargenes_src/../pargenes_binaries/mpi-scheduler --fork-scheduler 4 /opt/conda/conda-bld/pargenes_1608889558035/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/pargenes_src/../pargenes_binaries/raxml-ng /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes/mlsearch_run/mlsearch_command.txt /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes/mlsearch_run --threads-arg --threads
Logs will be redirected to /opt/conda/conda-bld/pargenes_1608889558035/work/tests/tests_outputs/test_ml_search/pargenes/mlsearch_run/logs.txt
[0:00:01] end of mlsearch mpi-scheduler run
[0:00:01] end of selecting the best ML tree
[0:00:01] END OF THE RUN OF pargenescore.pyc
