# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Mar 10 17:52:53 2023
# ------------------------------------------------

package:
  name: parascopy
  version: 1.9.7
source:
  sha256: 501284820658300df94f91daf7ec6131ed2521aff3a9e68811eb26056d9b1924
  url: https://github.com/tprodanov/parascopy/archive/v1.9.7.tar.gz
build:
  number: '1'
  string: py37h7321523_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_11
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2022.12.7 ha878542_0
    - gcc_impl_linux-64 10.4.0 h5231bdf_19
    - gcc_linux-64 10.4.0 h9215b83_11
    - gxx_impl_linux-64 10.4.0 h5231bdf_19
    - gxx_linux-64 10.4.0 h6e491c6_11
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 10.4.0 hd38fd1e_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libnsl 2.0.0 h7f98852_0
    - libsanitizer 10.4.0 h5246dfb_19
    - libsqlite 3.40.0 h753d276_0
    - libstdcxx-devel_linux-64 10.4.0 hd38fd1e_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libuuid 2.32.1 h7f98852_1000
    - libzlib 1.2.13 h166bdaf_4
    - meson 1.0.1 pyhd8ed1ab_0
    - ncurses 6.3 h27087fc_1
    - ninja 1.11.1 h924138e_0
    - openssl 3.0.8 h0b41bf4_0
    - pip 23.0.1 pyhd8ed1ab_0
    - pkg-config 0.29.2 h36c2ea0_1008
    - python 3.11.0 he550d4f_1_cpython
    - readline 8.1.2 h0f457ee_0
    - setuptools 67.6.0 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tzdata 2022g h191b570_0
    - wheel 0.38.4 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bc 1.07.1 h7f98852_0
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.12.7 ha878542_0
    - htslib 1.17 h6bc39ce_0
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.20.1 hf9c8cef_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - libcurl 7.87.0 h6312ad2_0
    - libdeflate 1.13 h166bdaf_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libnghttp2 1.51.0 hdcd2b5c_0
    - libnsl 2.0.0 h7f98852_0
    - libsqlite 3.40.0 h753d276_0
    - libssh2 1.10.0 haa6b8db_3
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libzlib 1.2.13 h166bdaf_4
    - ncurses 6.3 h27087fc_1
    - openssl 1.1.1t h0b41bf4_0
    - pip 23.0.1 pyhd8ed1ab_0
    - python 3.7.12 hb7a2778_100_cpython
    - readline 8.1.2 h0f457ee_0
    - samtools 1.16.1 h00cdaf9_2
    - setuptools 67.6.0 pyhd8ed1ab_0
    - sqlite 3.40.0 h4ff8645_0
    - tabixpp 1.1.0 h6448e42_12
    - tk 8.6.12 h27826a3_0
    - wheel 0.38.4 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 h166bdaf_4
  run:
    - biopython >=1.70
    - bwa >=0.7
    - bzip2 >=1.0.8,<2.0a0
    - htslib >=1.17,<1.18.0a0
    - intervaltree >=3.0
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - numpy >=1.15
    - parasail-python >=1.2
    - pysam >=0.17
    - python >=3.7,<3.8.0a0
    - python_abi 3.7.* *_cp37m
    - samtools >=1.11
    - scipy >=1.5
    - simpleeval >=0.9
    - tabixpp
test:
  commands:
    - parascopy help
    - parascopy pretable --version
    - parascopy table --version
    - parascopy depth --version
    - parascopy cn --version
    - parascopy cn-using --version
    - parascopy pool --version
    - parascopy view --version
    - parascopy psvs --version
    - parascopy msa --version
    - parascopy call --version
    - _parascopy_freebayes --version
about:
  home: https://github.com/tprodanov/parascopy
  license: MIT
  license_file: LICENSE
  summary: Calling paralog-specific copy number and sequence variants in duplicated
    genes using short-read whole-genome sequencing.
extra:
  copy_test_source_files: true
  final: true
