# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Jan  7 09:13:34 2025
# ------------------------------------------------

package:
  name: parascopy
  version: 1.17.2
source:
  sha256: 2673bb922c5d61b8054f8ea0cb4e213b028df6ea3bab9f7e844dc1420b05875f
  url: https://github.com/tprodanov/parascopy/archive/v1.17.2.tar.gz
build:
  entry_points:
    - parascopy=parascopy.entry_point:main
  number: '0'
  run_exports:
    - parascopy >=1.17.2,<2.0a0
  string: py39hf09c205_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - binutils_linux-64 2.43 h4852527_2
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.4 hb9d3cd8_0
    - ca-certificates 2024.12.14 hbcca054_0
    - cmake 3.31.2 h74e3db0_1
    - gcc_impl_linux-64 13.3.0 hfea6d02_1
    - gcc_linux-64 13.3.0 hc28eda2_7
    - gxx_impl_linux-64 13.3.0 hdbfa832_1
    - gxx_linux-64 13.3.0 h6834431_7
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libcurl 8.11.1 h332b0f4_0
    - libedit 3.1.20240808 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libexpat 2.6.4 h5888daf_0
    - libffi 3.4.2 h7f98852_5
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 13.3.0 h84ea5a7_101
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - liblzma 5.6.3 hb9d3cd8_1
    - libmpdec 4.0.0 h4bc722e_0
    - libnghttp2 1.64.0 h161d5f1_0
    - libsanitizer 13.3.0 heb74ff8_1
    - libsqlite 3.47.2 hee588c1_0
    - libssh2 1.11.1 hf672d98_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-devel_linux-64 13.3.0 h84ea5a7_101
    - libstdcxx-ng 14.2.0 h4852527_1
    - libuuid 2.38.1 h0b41bf4_0
    - libuv 1.49.2 hb9d3cd8_0
    - libzlib 1.3.1 hb9d3cd8_2
    - meson 1.6.1 pyhd8ed1ab_0
    - ncurses 6.5 he02047a_1
    - ninja 1.12.1 h297d8ca_0
    - openssl 3.4.0 h7b32b05_1
    - pip 24.3.1 pyh145f28c_2
    - pkg-config 0.29.2 h4bc722e_1009
    - python 3.13.1 ha99a958_102_cp313
    - python_abi 3.13 5_cp313
    - readline 8.2 h8228510_1
    - rhash 1.4.5 hb9d3cd8_0
    - setuptools 75.6.0 pyhff2d567_1
    - sysroot_linux-64 2.17 h0157908_18
    - tk 8.6.13 noxft_h4845f30_101
    - tzdata 2024b hc8b5060_0
    - zstd 1.5.6 ha6fb4c9_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.4 hb9d3cd8_0
    - ca-certificates 2024.12.14 hbcca054_0
    - htslib 1.21 h566b1c6_1
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libcurl 8.11.1 h332b0f4_0
    - libdeflate 1.23 h4ddbbb0_0
    - libedit 3.1.20240808 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libffi 3.4.2 h7f98852_5
    - libgcc 14.2.0 h77fa898_1
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - liblzma 5.6.3 hb9d3cd8_1
    - liblzma-devel 5.6.3 hb9d3cd8_1
    - libnghttp2 1.64.0 h161d5f1_0
    - libnsl 2.0.1 hd590300_0
    - libsqlite 3.47.2 hee588c1_0
    - libssh2 1.11.1 hf672d98_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-ng 14.2.0 h4852527_1
    - libuuid 2.38.1 h0b41bf4_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.3.1 hb9d3cd8_2
    - ncurses 6.5 he02047a_1
    - openssl 3.4.0 h7b32b05_1
    - pip 24.3.1 pyh8b19718_2
    - python 3.9.21 h9c0c6dc_1_cpython
    - readline 8.2 h8228510_1
    - samtools 1.21 h96c455f_1
    - setuptools 75.6.0 pyhff2d567_1
    - tabixpp 1.1.2 hbefcdb2_4
    - tk 8.6.13 noxft_h4845f30_101
    - tzdata 2024b hc8b5060_0
    - wheel 0.45.1 pyhd8ed1ab_1
    - xz 5.6.3 hbcc6ac9_1
    - xz-gpl-tools 5.6.3 hbcc6ac9_1
    - xz-tools 5.6.3 hb9d3cd8_1
    - zlib 1.3.1 hb9d3cd8_2
    - zstd 1.5.6 ha6fb4c9_0
  run:
    - biopython >=1.70
    - bwa >=0.7
    - bzip2 >=1.0.8,<2.0a0
    - construct
    - htslib >=1.21,<1.22.0a0
    - intervaltree >=3.0
    - libgcc >=13
    - liblzma >=5.6.3,<6.0a0
    - libstdcxx >=13
    - libzlib >=1.3.1,<2.0a0
    - numpy >=1.15
    - parasail-python >=1.2
    - pysam >=0.17
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - samtools >=1.11
    - scipy >=1.5
    - simpleeval >=0.9
    - tabixpp >=1.1.2,<1.1.3.0a0
test:
  commands:
    - parascopy help
    - parascopy pretable --version
    - parascopy table --version
    - parascopy depth --version
    - parascopy cn --version
    - parascopy cn-using --version
    - parascopy pool --version
    - parascopy view --version
    - parascopy psvs --version
    - parascopy msa --version
    - parascopy call --version
    - _parascopy_freebayes --version
about:
  dev_url: https://github.com/tprodanov/parascopy
  home: https://github.com/tprodanov/parascopy
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: Calling paralog-specific copy number and sequence variants in duplicated
    genes using short-read whole-genome sequencing.
extra:
  additional-platforms:
    - linux-aarch64
  copy_test_source_files: true
  final: true
