{
    "edges": [
        {
            "from": "ALT-1-1500-1506",
            "sequences": [
                "S1"
            ],
            "to": "REF-3-1507-1659"
        },
        {
            "from": "REF-1-1350-1500",
            "sequences": [
                "S1"
            ],
            "to": "ALT-1-1500-1506"
        },
        {
            "from": "REF-1-1350-1500",
            "sequences": [
                "REF"
            ],
            "to": "REF-2-1500-1507"
        },
        {
            "from": "REF-2-1500-1507",
            "sequences": [
                "REF"
            ],
            "to": "REF-3-1507-1659"
        },
        {
            "from": "REF-3-1507-1659",
            "to": "sink"
        },
        {
            "from": "source",
            "to": "REF-1-1350-1500"
        }
    ],
    "model_name": "Allele graph from /Users/pkrusche/workspace/grm.py/share/test-data/genotyping_test_2/chrA.vcf",
    "nodes": [
        {
            "name": "source",
            "sequence": "NNNNNNNNNN"
        },
        {
            "name": "REF-1-1350-1500",
            "reference": "chrA:1350-1499",
            "reference_sequence": "GAGCGTCAAAGGCCCGTCCTATAGACCTGAAGAGTGTTGAGAGTTCTATGGAAAAATTTATAGAGTACTTCCCAGTGTTTTAACTGTAACTGACTTCCATGATCATTTCAGTAATGCAGCCCACATGCATGTTCAAGACTAACACACCGT",
            "sequences": [
                "REF",
                "S1"
            ]
        },
        {
            "name": "REF-2-1500-1507",
            "reference": "chrA:1500-1506",
            "reference_sequence": "GCTGCCC",
            "sequences": [
                "REF"
            ]
        },
        {
            "name": "ALT-1-1500-1506",
            "sequence": "CTAGTAA",
            "sequences": [
                "S1"
            ]
        },
        {
            "name": "REF-3-1507-1659",
            "reference": "chrA:1507-1658",
            "reference_sequence": "CTTCGTTGACCCTGGTAGAAGTTAGCGGGGCTTGTTTAAGGTCGCGTCGGAATATATGATTTACATAACTGTCACTTTGGGACGCACCCGGCCTTATGGCCATGTGTATTGATAGACTGTCAACCTAACAAGAAAAATTAACGCTTTCCCGA",
            "sequences": [
                "REF",
                "S1"
            ]
        },
        {
            "name": "sink",
            "sequence": "NNNNNNNNNN"
        }
    ],
    "paths": [
        {
            "nodes": [
                "source",
                "REF-1-1350-1500",
                "REF-2-1500-1507",
                "REF-3-1507-1659",
                "sink"
            ],
            "nucleotide_length": 309,
            "path_id": "REF|1",
            "sequence": "REF"
        },
        {
            "nodes": [
                "source",
                "REF-1-1350-1500",
                "ALT-1-1500-1506",
                "REF-3-1507-1659",
                "sink"
            ],
            "nucleotide_length": 309,
            "path_id": "S1|1",
            "sequence": "S1"
        }
    ],
    "sequencenames": [
        "REF",
        "S1"
    ],
    "target_regions": [
        "chrA:1350-1658"
    ],
    "vcf_records": [
        {
            "alts": [
                "CTAGTAACTT"
            ],
            "chrom": "chrA",
            "end": 1509,
            "id": "swap1",
            "pos": 1500,
            "ref": "GCTGCCCCTT"
        }
    ]
}
