{
    "edges": [
        {
            "from": "ALT-1-1501-1697",
            "sequences": [
                "S1"
            ],
            "to": "REF-3-1698-1849"
        },
        {
            "from": "REF-1-1350-1501",
            "sequences": [
                "S1"
            ],
            "to": "ALT-1-1501-1697"
        },
        {
            "from": "REF-1-1350-1501",
            "sequences": [
                "REF"
            ],
            "to": "REF-2-1501-1698"
        },
        {
            "from": "REF-2-1501-1698",
            "sequences": [
                "REF"
            ],
            "to": "REF-3-1698-1849"
        },
        {
            "from": "REF-3-1698-1849",
            "to": "sink"
        },
        {
            "from": "source",
            "to": "REF-1-1350-1501"
        }
    ],
    "model_name": "Allele graph from /Users/pkrusche/workspace/grm.py/share/test-data/genotyping_test_2/chrC.vcf",
    "nodes": [
        {
            "name": "source",
            "sequence": "NNNNNNNNNN"
        },
        {
            "name": "REF-1-1350-1501",
            "reference": "chrC:1350-1500",
            "reference_sequence": "CTAACATACGGAAACGGTCCGCCTGGTCCACCATCATGCCTCCCGCCCATCGGTCAAAATGAATTTCCTCCTTTTAACCGGCAGGGTTGATAAGGTGCTCATAGAGAGCGTACCCTCTTAGTAGAGAACCAGGCACCGTTACCACTTTGTC",
            "sequences": [
                "REF",
                "S1"
            ]
        },
        {
            "name": "REF-2-1501-1698",
            "reference": "chrC:1501-1697",
            "reference_sequence": "GCGTTGTAAGCTACCATATTCAATCTGTGCCAGGGATCGAGCCACAGGCACCGCTCAATCTCGCGGGAGATTGTGCAAAGAGTCTTACCTTTCGTCGACCTCCGCCTCGCTCGTGAATCTTGCGATCGATTGAAAGTCACGGGTAGAGTGATGTTCGGGCGAATCAGACAGGCAGATGCAATGGAGGTTCCCGGATA",
            "sequences": [
                "REF"
            ]
        },
        {
            "name": "ALT-1-1501-1697",
            "sequence": "CGGAGATACCCTCTGTCTCCGCTAACATTTCCCCGCGGACAAAATTTGTCGGCTGGGAGGAATAGGTGCAAACGCATAATATACCCCTCTTACTTTTTGTTAGGGTCTAGTCCGAATCTAAAAAATGACTAAGGACTCTCAGAGTGATGGATATATGCCTCGCGACGCCGATCTGTGCTTATGTCGCAGCTTTGGCATCAAACCAGTTTCACATACCCTGCCTAAAAGATTCCCATACTGCGAAATCGCAAGATTGTACAAGTTGTAGTCTGTGCGCCAGCGTGAGCACGGCACTCG",
            "sequences": [
                "S1"
            ]
        },
        {
            "name": "REF-3-1698-1849",
            "reference": "chrC:1698-1848",
            "reference_sequence": "GTGTCAGCTATCTTTCTTTGAGCGCCTGGAATCGATCTTGGCTCCGTATGTACGGAAGGACGTGGGGAGCCCAGTCCGTTCCCTCAACGGATCAGATCGCTCTCGAAATTATCGCAGATGGGCGTGAGGAATTTGGGCCCCAACGTTTACC",
            "sequences": [
                "REF",
                "S1"
            ]
        },
        {
            "name": "sink",
            "sequence": "NNNNNNNNNN"
        }
    ],
    "paths": [
        {
            "nodes": [
                "source",
                "REF-1-1350-1501",
                "REF-2-1501-1698",
                "REF-3-1698-1849",
                "sink"
            ],
            "nucleotide_length": 499,
            "path_id": "REF|1",
            "sequence": "REF"
        },
        {
            "nodes": [
                "source",
                "REF-1-1350-1501",
                "ALT-1-1501-1697",
                "REF-3-1698-1849",
                "sink"
            ],
            "nucleotide_length": 599,
            "path_id": "S1|1",
            "sequence": "S1"
        }
    ],
    "sequencenames": [
        "REF",
        "S1"
    ],
    "target_regions": [
        "chrC:1350-1848"
    ],
    "vcf_records": [
        {
            "alts": [
                "CCGGAGATACCCTCTGTCTCCGCTAACATTTCCCCGCGGACAAAATTTGTCGGCTGGGAGGAATAGGTGCAAACGCATAATATACCCCTCTTACTTTTTGTTAGGGTCTAGTCCGAATCTAAAAAATGACTAAGGACTCTCAGAGTGATGGATATATGCCTCGCGACGCCGATCTGTGCTTATGTCGCAGCTTTGGCATCAAACCAGTTTCACATACCCTGCCTAAAAGATTCCCATACTGCGAAATCGCAAGATTGTACAAGTTGTAGTCTGTGCGCCAGCGTGAGCACGGCACTCGGT"
            ],
            "chrom": "chrC",
            "end": 1699,
            "id": "swap3",
            "pos": 1500,
            "ref": "CGCGTTGTAAGCTACCATATTCAATCTGTGCCAGGGATCGAGCCACAGGCACCGCTCAATCTCGCGGGAGATTGTGCAAAGAGTCTTACCTTTCGTCGACCTCCGCCTCGCTCGTGAATCTTGCGATCGATTGAAAGTCACGGGTAGAGTGATGTTCGGGCGAATCAGACAGGCAGATGCAATGGAGGTTCCCGGATAGT"
        }
    ]
}
