##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=END,Number=1,Type=Integer,Description="SV end position">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakends">
##INFO=<ID=PARID,Number=1,Type=String,Description="ID of partner breakend">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INV,Description="Inversion">
##reference=hg19
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	REF	ALT
chr4	1000	del-1	C	<DEL>	.	PASS	SVTYPE=DEL;END=8816	GT	0	1
chr4	1000	del-2	C	<DEL>	.	PASS	SVTYPE=DEL;END=8816	GT	0	1
