##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=chrA,length=3000>
##contig=<ID=chrB,length=3000>
##contig=<ID=chrC,length=3000>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	swaps
chrB	1500	swap2	AGGCCATACG	ATCAGGTTGTCTTATGCTTGGCATCGTTCTT	.	PASS	.	GT	1/1
