Bio::FastParsers::Blast::Xml::Parameters(3)

NAME
Bio::FastParsers::Blast::Xml::Parameters - NCBI BLAST DTD-derived internal class

VERSION
version 0.221230

SYNOPSIS
    # see Bio::FastParsers::Blast::Xml

DESCRIPTION
This class implements the "Parameters" level of the XML BLAST parser.

METHODS

  entrez_query
Returns the value of the element "<Parameters_entrez-query">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $entrez_query = $parameters->entrez_query;

This method does not accept any arguments.

  expect
Returns the value of the element "<Parameters_expect">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $expect = $parameters->expect;

This method does not accept any arguments.

  filter
Returns the value of the element "<Parameters_filter">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $filter = $parameters->filter;

This method does not accept any arguments.

  gap_extend
Returns the value of the element "<Parameters_gap-extend">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $gap_extend = $parameters->gap_extend;

This method does not accept any arguments.

  gap_open
Returns the value of the element "<Parameters_gap-open">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $gap_open = $parameters->gap_open;

This method does not accept any arguments.

  include
Returns the value of the element "<Parameters_include">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $include = $parameters->include;

This method does not accept any arguments.

  matrix
Returns the value of the element "<Parameters_matrix">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $matrix = $parameters->matrix;

This method does not accept any arguments.

  pattern
Returns the value of the element "<Parameters_pattern">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $pattern = $parameters->pattern;

This method does not accept any arguments.

  sc_match
Returns the value of the element "<Parameters_sc-match">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $sc_match = $parameters->sc_match;

This method does not accept any arguments.

  sc_mismatch
Returns the value of the element "<Parameters_sc-mismatch">.

    # $parameters is a Bio::FastParsers::Blast::Xml::Parameters
    my $sc_mismatch = $parameters->sc_mismatch;

This method does not accept any arguments.

ALIASES

  evalue
Alias for "expect" method. For API consistency.

AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>

COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.