----------------
TREE CLUSTERING
----------------

This test environment tests the tree mode for clustering.
It uses a subset of the Nematocera clade (7148) where each fasta file have
been randomly downsampled to max 200 sequences.
There is data for 7147 clade, but for speed the default clade in this test
is 7148.

The full tree is:

  7147
    |-- 7148 - 7157 - 7164
    |
    |-- 7203 -------- 7393
          |
          |-- 7214 -- 7215


Set up the environment by running ./setup.sh.
If it fails, it most likely fails on one of the tool directories in common.sh (see DIR_BRHCLUS etc).
Note that DIR_SWIPE is only needed if SWIPE is used as aligner.

Once the config is good, run the full test using:
./run_full_test.sh


The clusters can be tested running
./check_clusters.sh

All comparisons will be in files named cmp_*.log .
