#!/usr/bin/env bash
#
# orthologer - Pipeline for deducing orthology from fasta files.
# Copyright (C) 2005-2023 E. Zdobnov lab: F. Tegenfeldt
# <fredrik.tegenfeldt@unige.ch> based on code by E. Kriventseva
#
# This file is part of orthologer.
#
# orthologer is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# orthologer is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with orthologer.  If not, see <http://www.gnu.org/licenses/>.
#
#
# Run given job scheduler
#

#--- check if environment is ok -----------------
[ "${LOADED_COMMON_PIPELINE_SH+1}" == "" ] && echo "ERROR $0 : common.sh has not been loaded" 1>&2 && exit 255
#------------------------------------------------

# check for scheduler script
if [ ! -x "$SCHEDULER_SCRIPT" ]; then
    error_msg "cannot find executable for job scheduler $SCHEDULER_LABEL"
    exit 253
fi

# run the script
args="$*"
source "${SCHEDULER_SCRIPT}" $args
ec=$?
if [[ $ec -ne 0 ]]; then
    error_msg "failed running scheduler script"
    cp -f "${SCHEDULER_SCRIPT}" "${SCHEDULER_SCRIPT}.saved"
    error_msg "look in script: ${SCHEDULER_SCRIPT}.saved"
    error_msg "args = $args"
fi
exit $ec
