MANIFEST.in
README.txt
requirements.txt
setup.cfg
setup.py
distutils.ext/obidistutils/__init__.py
distutils.ext/obidistutils/core.py
distutils.ext/obidistutils/dist.py
distutils.ext/obidistutils/command/__init__.py
distutils.ext/obidistutils/command/build.py
distutils.ext/obidistutils/command/build_cexe.py
distutils.ext/obidistutils/command/build_ctools.py
distutils.ext/obidistutils/command/build_exe.py
distutils.ext/obidistutils/command/build_ext.py
distutils.ext/obidistutils/command/build_files.py
distutils.ext/obidistutils/command/build_filters.py
distutils.ext/obidistutils/command/build_scripts.py
distutils.ext/obidistutils/command/install.py
distutils.ext/obidistutils/command/install_scripts.py
distutils.ext/obidistutils/command/littlebigman.py
distutils.ext/obidistutils/command/pidname.py
distutils.ext/obidistutils/serenity/__init__.py
distutils.ext/obidistutils/serenity/checkpackage.py
distutils.ext/obidistutils/serenity/checkpip.py
distutils.ext/obidistutils/serenity/checkpython.py
distutils.ext/obidistutils/serenity/checksystem.py
distutils.ext/obidistutils/serenity/globals.py
distutils.ext/obidistutils/serenity/rerun.py
distutils.ext/obidistutils/serenity/snake.py
distutils.ext/obidistutils/serenity/util.py
distutils.ext/obidistutils/serenity/virtual.py
distutils.ext/src/littlebigman.c
distutils.ext/src/pidname.c
doc/sphinx/Makefile
doc/sphinx/make.bat
doc/sphinx/source/annotations.rst
doc/sphinx/source/attributes.rst
doc/sphinx/source/barcodes.rst
doc/sphinx/source/conf.py
doc/sphinx/source/conversions.rst
doc/sphinx/source/embl.rst
doc/sphinx/source/fasta.rst
doc/sphinx/source/fastq.rst
doc/sphinx/source/filtering.rst
doc/sphinx/source/formats.rst
doc/sphinx/source/genbank.rst
doc/sphinx/source/index.rst
doc/sphinx/source/introduction.rst
doc/sphinx/source/iupac.rst
doc/sphinx/source/manipulations.rst
doc/sphinx/source/obitaxonomy.rst
doc/sphinx/source/scripts.rst
doc/sphinx/source/statistics.rst
doc/sphinx/source/taxdump.rst
doc/sphinx/source/tutorials.rst
doc/sphinx/source/utilities.rst
doc/sphinx/source/welcome.rst
doc/sphinx/source/wolves.rst
doc/sphinx/source/attributes/ali_dir.rst
doc/sphinx/source/attributes/ali_length.rst
doc/sphinx/source/attributes/avg_quality.rst
doc/sphinx/source/attributes/best_identity.rst
doc/sphinx/source/attributes/best_match.rst
doc/sphinx/source/attributes/class.rst
doc/sphinx/source/attributes/cluster.rst
doc/sphinx/source/attributes/complemented.rst
doc/sphinx/source/attributes/count.rst
doc/sphinx/source/attributes/cut.rst
doc/sphinx/source/attributes/direction.rst
doc/sphinx/source/attributes/distance.rst
doc/sphinx/source/attributes/error.rst
doc/sphinx/source/attributes/experiment.rst
doc/sphinx/source/attributes/family.rst
doc/sphinx/source/attributes/family_name.rst
doc/sphinx/source/attributes/forward_error.rst
doc/sphinx/source/attributes/forward_match.rst
doc/sphinx/source/attributes/forward_primer.rst
doc/sphinx/source/attributes/forward_score.rst
doc/sphinx/source/attributes/forward_tag.rst
doc/sphinx/source/attributes/forward_tm.rst
doc/sphinx/source/attributes/genus.rst
doc/sphinx/source/attributes/genus_name.rst
doc/sphinx/source/attributes/head_quality.rst
doc/sphinx/source/attributes/id_status.rst
doc/sphinx/source/attributes/merged.rst
doc/sphinx/source/attributes/merged_star.rst
doc/sphinx/source/attributes/mid_quality.rst
doc/sphinx/source/attributes/mode.rst
doc/sphinx/source/attributes/obiclean_cluster.rst
doc/sphinx/source/attributes/obiclean_count.rst
doc/sphinx/source/attributes/obiclean_head.rst
doc/sphinx/source/attributes/obiclean_headcount.rst
doc/sphinx/source/attributes/obiclean_internalcount.rst
doc/sphinx/source/attributes/obiclean_samplecount.rst
doc/sphinx/source/attributes/obiclean_singletoncount.rst
doc/sphinx/source/attributes/obiclean_status.rst
doc/sphinx/source/attributes/occurrence.rst
doc/sphinx/source/attributes/order.rst
doc/sphinx/source/attributes/order_name.rst
doc/sphinx/source/attributes/pairend_limit.rst
doc/sphinx/source/attributes/partial.rst
doc/sphinx/source/attributes/rank.rst
doc/sphinx/source/attributes/reverse_error.rst
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doc/sphinx/source/attributes/sample.rst
doc/sphinx/source/attributes/scientific_name.rst
doc/sphinx/source/attributes/score.rst
doc/sphinx/source/attributes/score_norm.rst
doc/sphinx/source/attributes/select.rst
doc/sphinx/source/attributes/seq_a_deletion.rst
doc/sphinx/source/attributes/seq_a_insertion.rst
doc/sphinx/source/attributes/seq_a_mismatch.rst
doc/sphinx/source/attributes/seq_a_single.rst
doc/sphinx/source/attributes/seq_ab_match.rst
doc/sphinx/source/attributes/seq_b_deletion.rst
doc/sphinx/source/attributes/seq_b_insertion.rst
doc/sphinx/source/attributes/seq_b_mismatch.rst
doc/sphinx/source/attributes/seq_b_single.rst
doc/sphinx/source/attributes/seq_length.rst
doc/sphinx/source/attributes/seq_length_ori.rst
doc/sphinx/source/attributes/seq_rank.rst
doc/sphinx/source/attributes/sminL.rst
doc/sphinx/source/attributes/sminR.rst
doc/sphinx/source/attributes/species.rst
doc/sphinx/source/attributes/species_list.rst
doc/sphinx/source/attributes/species_name.rst
doc/sphinx/source/attributes/status.rst
doc/sphinx/source/attributes/strand.rst
doc/sphinx/source/attributes/tail_quality.rst
doc/sphinx/source/attributes/taxid.rst
doc/sphinx/source/optionsSet/defaultoptions.txt
doc/sphinx/source/optionsSet/inputformat.txt
doc/sphinx/source/optionsSet/outputformat.txt
doc/sphinx/source/optionsSet/sequenceEdit.txt
doc/sphinx/source/optionsSet/sequenceFilter.txt
doc/sphinx/source/optionsSet/taxonomyDB.txt
doc/sphinx/source/optionsSet/taxonomyFilter.txt
doc/sphinx/source/scripts/ecoPCR.rst
doc/sphinx/source/scripts/ecoPrimers.rst
doc/sphinx/source/scripts/ecodbtaxstat.rst
doc/sphinx/source/scripts/ecofind.rst
doc/sphinx/source/scripts/ecotag.rst
doc/sphinx/source/scripts/ecotaxspecificity.rst
doc/sphinx/source/scripts/ecotaxstat.rst
doc/sphinx/source/scripts/illuminapairedend.rst
doc/sphinx/source/scripts/ngsfilter.rst
doc/sphinx/source/scripts/obiaddtaxids.rst
doc/sphinx/source/scripts/obiannotate.rst
doc/sphinx/source/scripts/obiclean.rst
doc/sphinx/source/scripts/obicomplement.rst
doc/sphinx/source/scripts/obiconvert.rst
doc/sphinx/source/scripts/obicount.rst
doc/sphinx/source/scripts/obicut.rst
doc/sphinx/source/scripts/obidistribute.rst
doc/sphinx/source/scripts/obigrep.rst
doc/sphinx/source/scripts/obihead.rst
doc/sphinx/source/scripts/obijoinpairedend.rst
doc/sphinx/source/scripts/obisample.rst
doc/sphinx/source/scripts/obiselect.rst
doc/sphinx/source/scripts/obisort.rst
doc/sphinx/source/scripts/obisplit.rst
doc/sphinx/source/scripts/obistat.rst
doc/sphinx/source/scripts/obitab.rst
doc/sphinx/source/scripts/obitail.rst
doc/sphinx/source/scripts/obitaxonomy.rst
doc/sphinx/source/scripts/obiuniq.rst
doc/sphinx/source/scripts/oligotag.rst
src/ali2consensus.py
src/ecodbtaxstat.py
src/ecotag.py
src/ecotaxspecificity.py
src/ecotaxstat.py
src/extractreads.py
src/extractreads2.py
src/illuminapairedend.py
src/ngsfilter.py
src/obiaddtaxids.py
src/obiannotate.py
src/obiclean.py
src/obicomplement.py
src/obiconvert.py
src/obicount.py
src/obicut.py
src/obidistribute.py
src/obigrep.py
src/obihead.py
src/obijoinpairedend.py
src/obisample.py
src/obiselect.py
src/obisort.py
src/obisplit.py
src/obistat.py
src/obitab.py
src/obitail.py
src/obitaxonomy.py
src/obiuniq.py
src/oligotag.py
src/OBITools.egg-info/PKG-INFO
src/OBITools.egg-info/SOURCES.txt
src/OBITools.egg-info/dependency_links.txt
src/OBITools.egg-info/not-zip-safe
src/OBITools.egg-info/requires.txt
src/OBITools.egg-info/top_level.txt
src/obitools/SVGdraw.py
src/obitools/__init__.py
src/obitools/_obitools.c
src/obitools/_obitools.h
src/obitools/_obitools.pxd
src/obitools/_obitools.pyx
src/obitools/collections.py
src/obitools/decorator.py
src/obitools/fast.py
src/obitools/gzip.py
src/obitools/sample.py
src/obitools/solexaPairEnd.py
src/obitools/svg.py
src/obitools/version.py
src/obitools/zipfile.py
src/obitools/align/__init__.py
src/obitools/align/_assemble.c
src/obitools/align/_assemble.pxd
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src/obitools/align/_codonnws.c
src/obitools/align/_codonnws.pxd
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src/obitools/align/_dynamic.c
src/obitools/align/_dynamic.pxd
src/obitools/align/_dynamic.pyx
src/obitools/align/_freeendgap.c
src/obitools/align/_freeendgap.pxd
src/obitools/align/_freeendgap.pyx
src/obitools/align/_freeendgapfm.c
src/obitools/align/_freeendgapfm.pxd
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src/obitools/align/_gprofilenws.c
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src/obitools/align/_gprofilenws.pyx
src/obitools/align/_lcs.c
src/obitools/align/_lcs.cfiles
src/obitools/align/_lcs.ext.1.c
src/obitools/align/_lcs.ext.2.c
src/obitools/align/_lcs.ext.3.c
src/obitools/align/_lcs.ext.4.c
src/obitools/align/_lcs.h
src/obitools/align/_lcs.pxd
src/obitools/align/_lcs.pyx
src/obitools/align/_lcs_fast.h
src/obitools/align/_nws.c
src/obitools/align/_nws.pxd
src/obitools/align/_nws.pyx
src/obitools/align/_nwsdnabyprot.c
src/obitools/align/_nwsdnabyprot.pxd
src/obitools/align/_nwsdnabyprot.pyx
src/obitools/align/_profilenws.c
src/obitools/align/_profilenws.pxd
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src/obitools/align/_qsassemble.c
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src/obitools/align/_qsrassemble.c
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src/obitools/align/_upperbond.c
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src/obitools/align/_upperbond.pxd
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src/obitools/align/array.pxd
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src/obitools/align/homopolymere.py
src/obitools/align/ssearch.py
src/obitools/alignment/__init__.py
src/obitools/alignment/ace.py
src/obitools/barcodecoverage/__init__.py
src/obitools/barcodecoverage/calcBc.py
src/obitools/barcodecoverage/drawBcTree.py
src/obitools/barcodecoverage/findErrors.py
src/obitools/barcodecoverage/readFiles.py
src/obitools/barcodecoverage/writeBcTree.py
src/obitools/blast/__init__.py
src/obitools/carto/__init__.py
src/obitools/distances/__init__.py
src/obitools/distances/observed.py
src/obitools/distances/phylip.py
src/obitools/distances/r.py
src/obitools/dnahash/__init__.py
src/obitools/ecobarcode/__init__.py
src/obitools/ecobarcode/databases.py
src/obitools/ecobarcode/ecotag.py
src/obitools/ecobarcode/options.py
src/obitools/ecobarcode/rawdata.py
src/obitools/ecobarcode/taxonomy.py
src/obitools/ecopcr/__init__.py
src/obitools/ecopcr/annotation.py
src/obitools/ecopcr/options.py
src/obitools/ecopcr/sequence.py
src/obitools/ecopcr/taxonomy.py
src/obitools/ecotag/__init__.py
src/obitools/ecotag/parser.py
src/obitools/eutils/__init__.py
src/obitools/fasta/__init__.py
src/obitools/fasta/_fasta.c
src/obitools/fasta/_fasta.pxd
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src/obitools/fastq/__init__.py
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src/obitools/fnaqual/__init__.py
src/obitools/fnaqual/fasta.py
src/obitools/fnaqual/quality.py
src/obitools/format/__init__.py
src/obitools/format/_format.c
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src/obitools/format/genericparser/__init__.py
src/obitools/format/genericparser/_genericparser.c
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src/obitools/format/ontology/__init__.py
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src/obitools/goa/parser.py
src/obitools/graph/__init__.py
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src/obitools/graph/algorithms/component.py
src/obitools/graph/layout/__init__.py
src/obitools/graph/layout/radialtree.py
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src/obitools/location/__init__.py
src/obitools/location/feature.py
src/obitools/metabarcoding/__init__.py
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src/obitools/obischemas/__init__.py
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src/obitools/obischemas/kb/__init__.py
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src/obitools/options/__init__.py
src/obitools/options/_bioseqfilter.c
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src/obitools/options/bioseqcutter.py
src/obitools/options/bioseqedittag.py
src/obitools/options/bioseqfilter.py
src/obitools/options/taxonomyfilter.py
src/obitools/parallel/__init__.py
src/obitools/parallel/jobqueue.py
src/obitools/phylogeny/__init__.py
src/obitools/phylogeny/newick.py
src/obitools/profile/__init__.py
src/obitools/profile/_profile.c
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src/obitools/seqdb/__init__.py
src/obitools/seqdb/dnaparser.py
src/obitools/seqdb/blastdb/__init__.py
src/obitools/seqdb/embl/__init__.py
src/obitools/seqdb/embl/parser.py
src/obitools/seqdb/genbank/__init__.py
src/obitools/seqdb/genbank/ncbi.py
src/obitools/seqdb/genbank/parser.py
src/obitools/sequenceencoder/__init__.py
src/obitools/solexa/__init__.py
src/obitools/statistics/__init__.py
src/obitools/statistics/hypergeometric.py
src/obitools/statistics/noncentralhypergeo.py
src/obitools/table/__init__.py
src/obitools/table/csv.py
src/obitools/tagmatcher/__init__.py
src/obitools/tagmatcher/options.py
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src/obitools/thermo/__init__.py
src/obitools/tools/__init__.py
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src/obitools/tree/dot.py
src/obitools/tree/layout.py
src/obitools/tree/newick.py
src/obitools/tree/svg.py
src/obitools/tree/unrooted.py
src/obitools/unit/__init__.py
src/obitools/unit/obitools/__init__.py
src/obitools/utils/__init__.py
src/obitools/utils/_utils.c
src/obitools/utils/_utils.pxd
src/obitools/utils/_utils.pyx
src/obitools/utils/bioseq.py
src/obitools/utils/crc64.py
src/obitools/utils/iterator.py
src/obitools/word/__init__.py
src/obitools/word/_binary.c
src/obitools/word/_binary.pyx
src/obitools/word/_readindex.c
src/obitools/word/_readindex.cfiles
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src/obitools/word/_readindex.pyx
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src/obitools/word/predicate.py