# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jun  5 21:36:44 2024
# ------------------------------------------------

package:
  name: nextpolish
  version: 1.4.1
source:
  patches:
    - fix_get_version.patch
    - fix_nextpolish_paths.patch
  sha256: 2a5f66f3db7f76e583a6b6e28f9c1f3c392258b8d755050d7abe129a2fbb48c4
  url: https://github.com/Nextomics/NextPolish/releases/download/v1.4.1/NextPolish.tgz
build:
  number: '3'
  run_exports:
    - nextpolish >=1.4.1,<2.0a0
  string: py312ha5a3fb2_3
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.40 ha1999f0_2
    - binutils_linux-64 2.40 hdade7a5_3
    - gcc_impl_linux-64 12.3.0 h58ffeeb_7
    - gcc_linux-64 12.3.0 h6477408_3
    - kernel-headers_linux-64 2.6.32 he073ed8_17
    - ld_impl_linux-64 2.40 hf3520f5_2
    - libgcc-devel_linux-64 12.3.0 h0223996_107
    - libgcc-ng 13.2.0 h77fa898_7
    - libgomp 13.2.0 h77fa898_7
    - libsanitizer 12.3.0 hb8811af_7
    - libstdcxx-ng 13.2.0 hc0a3c3a_7
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_17
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 hd590300_5
    - ca-certificates 2024.6.2 hbcca054_0
    - ld_impl_linux-64 2.40 hf3520f5_2
    - libexpat 2.6.2 h59595ed_0
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 13.2.0 h77fa898_7
    - libgomp 13.2.0 h77fa898_7
    - libnsl 2.0.1 hd590300_0
    - libsqlite 3.45.3 h2797004_0
    - libuuid 2.38.1 h0b41bf4_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.2.13 h4ab18f5_6
    - ncurses 6.5 h59595ed_0
    - openssl 3.3.1 h4ab18f5_0
    - paralleltask 0.1.1 pyhd8ed1ab_0
    - pip 24.0 pyhd8ed1ab_0
    - psutil 5.9.8 py312h98912ed_0
    - python 3.12.3 hab00c5b_0_cpython
    - python_abi 3.12 4_cp312
    - readline 8.2 h8228510_1
    - setuptools 70.0.0 pyhd8ed1ab_0
    - tk 8.6.13 noxft_h4845f30_101
    - tzdata 2024a h0c530f3_0
    - wheel 0.43.0 pyhd8ed1ab_1
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 h4ab18f5_6
  run:
    - bwa
    - bzip2 >=1.0.8,<2.0a0
    - libgcc-ng >=12
    - libzlib >=1.2.13,<2.0a0
    - minimap2
    - paralleltask
    - python >=3.12,<3.13.0a0
    - python_abi 3.12.* *_cp312
    - samtools
test:
  commands:
    - nextPolish --help
    - nextPolish --version
about:
  dev_url: https://github.com/Nextomics/NextPolish
  doc_url: https://nextpolish.readthedocs.io/en/latest
  home: https://github.com/Nextomics/NextPolish
  license: GPL-3.0-or-later
  license_family: GPL3
  license_file: LICENSE
  summary: Fast and accurately polish the genome generated by noisy long reads
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:NextPolish
    - doi:10.1093/bioinformatics/btz891
  recipe-maintainers:
    - rpetit3
