bin/nextPolish
bin/seq_count
bin/seq_split
share/nextpolish-1.4.1/lib/__pycache__/config_parser.cpython-312.pyc
share/nextpolish-1.4.1/lib/__pycache__/kit.cpython-312.pyc
share/nextpolish-1.4.1/lib/__pycache__/nextpolish1.cpython-312.pyc
share/nextpolish-1.4.1/lib/__pycache__/nextpolish2.cpython-312.pyc
share/nextpolish-1.4.1/lib/calgs.so
share/nextpolish-1.4.1/lib/config_parser.py
share/nextpolish-1.4.1/lib/htslib/.appveyor.yml
share/nextpolish-1.4.1/lib/htslib/.gitattributes
share/nextpolish-1.4.1/lib/htslib/.gitignore
share/nextpolish-1.4.1/lib/htslib/.travis.yml
share/nextpolish-1.4.1/lib/htslib/INSTALL
share/nextpolish-1.4.1/lib/htslib/LICENSE
share/nextpolish-1.4.1/lib/htslib/Makefile
share/nextpolish-1.4.1/lib/htslib/NEWS
share/nextpolish-1.4.1/lib/htslib/README
share/nextpolish-1.4.1/lib/htslib/README.md
share/nextpolish-1.4.1/lib/htslib/bcf_sr_sort.c
share/nextpolish-1.4.1/lib/htslib/bcf_sr_sort.h
share/nextpolish-1.4.1/lib/htslib/bgzf.c
share/nextpolish-1.4.1/lib/htslib/bgzip.1
share/nextpolish-1.4.1/lib/htslib/bgzip.c
share/nextpolish-1.4.1/lib/htslib/config.mk.in
share/nextpolish-1.4.1/lib/htslib/configure.ac
share/nextpolish-1.4.1/lib/htslib/cram/cram.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_codecs.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_codecs.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_decode.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_decode.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_encode.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_encode.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_external.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_index.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_index.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_io.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_io.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_samtools.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_samtools.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_stats.c
share/nextpolish-1.4.1/lib/htslib/cram/cram_stats.h
share/nextpolish-1.4.1/lib/htslib/cram/cram_structs.h
share/nextpolish-1.4.1/lib/htslib/cram/files.c
share/nextpolish-1.4.1/lib/htslib/cram/mFILE.c
share/nextpolish-1.4.1/lib/htslib/cram/mFILE.h
share/nextpolish-1.4.1/lib/htslib/cram/misc.h
share/nextpolish-1.4.1/lib/htslib/cram/open_trace_file.c
share/nextpolish-1.4.1/lib/htslib/cram/open_trace_file.h
share/nextpolish-1.4.1/lib/htslib/cram/os.h
share/nextpolish-1.4.1/lib/htslib/cram/pooled_alloc.c
share/nextpolish-1.4.1/lib/htslib/cram/pooled_alloc.h
share/nextpolish-1.4.1/lib/htslib/cram/rANS_byte.h
share/nextpolish-1.4.1/lib/htslib/cram/rANS_static.c
share/nextpolish-1.4.1/lib/htslib/cram/rANS_static.h
share/nextpolish-1.4.1/lib/htslib/cram/sam_header.c
share/nextpolish-1.4.1/lib/htslib/cram/sam_header.h
share/nextpolish-1.4.1/lib/htslib/cram/string_alloc.c
share/nextpolish-1.4.1/lib/htslib/cram/string_alloc.h
share/nextpolish-1.4.1/lib/htslib/errmod.c
share/nextpolish-1.4.1/lib/htslib/faidx.5
share/nextpolish-1.4.1/lib/htslib/faidx.c
share/nextpolish-1.4.1/lib/htslib/hfile.c
share/nextpolish-1.4.1/lib/htslib/hfile_gcs.c
share/nextpolish-1.4.1/lib/htslib/hfile_internal.h
share/nextpolish-1.4.1/lib/htslib/hfile_libcurl.c
share/nextpolish-1.4.1/lib/htslib/hfile_net.c
share/nextpolish-1.4.1/lib/htslib/hfile_s3.c
share/nextpolish-1.4.1/lib/htslib/hts.c
share/nextpolish-1.4.1/lib/htslib/hts_internal.h
share/nextpolish-1.4.1/lib/htslib/hts_os.c
share/nextpolish-1.4.1/lib/htslib/htsfile.1
share/nextpolish-1.4.1/lib/htslib/htsfile.c
share/nextpolish-1.4.1/lib/htslib/htslib.mk
share/nextpolish-1.4.1/lib/htslib/htslib.pc.in
share/nextpolish-1.4.1/lib/htslib/htslib/bgzf.h
share/nextpolish-1.4.1/lib/htslib/htslib/cram.h
share/nextpolish-1.4.1/lib/htslib/htslib/faidx.h
share/nextpolish-1.4.1/lib/htslib/htslib/hfile.h
share/nextpolish-1.4.1/lib/htslib/htslib/hts.h
share/nextpolish-1.4.1/lib/htslib/htslib/hts_defs.h
share/nextpolish-1.4.1/lib/htslib/htslib/hts_endian.h
share/nextpolish-1.4.1/lib/htslib/htslib/hts_log.h
share/nextpolish-1.4.1/lib/htslib/htslib/hts_os.h
share/nextpolish-1.4.1/lib/htslib/htslib/kbitset.h
share/nextpolish-1.4.1/lib/htslib/htslib/kfunc.h
share/nextpolish-1.4.1/lib/htslib/htslib/khash.h
share/nextpolish-1.4.1/lib/htslib/htslib/khash_str2int.h
share/nextpolish-1.4.1/lib/htslib/htslib/klist.h
share/nextpolish-1.4.1/lib/htslib/htslib/knetfile.h
share/nextpolish-1.4.1/lib/htslib/htslib/kseq.h
share/nextpolish-1.4.1/lib/htslib/htslib/ksort.h
share/nextpolish-1.4.1/lib/htslib/htslib/kstring.h
share/nextpolish-1.4.1/lib/htslib/htslib/regidx.h
share/nextpolish-1.4.1/lib/htslib/htslib/sam.h
share/nextpolish-1.4.1/lib/htslib/htslib/synced_bcf_reader.h
share/nextpolish-1.4.1/lib/htslib/htslib/tbx.h
share/nextpolish-1.4.1/lib/htslib/htslib/thread_pool.h
share/nextpolish-1.4.1/lib/htslib/htslib/vcf.h
share/nextpolish-1.4.1/lib/htslib/htslib/vcf_sweep.h
share/nextpolish-1.4.1/lib/htslib/htslib/vcfutils.h
share/nextpolish-1.4.1/lib/htslib/htslib_vars.mk
share/nextpolish-1.4.1/lib/htslib/kfunc.c
share/nextpolish-1.4.1/lib/htslib/knetfile.c
share/nextpolish-1.4.1/lib/htslib/kstring.c
share/nextpolish-1.4.1/lib/htslib/m4/hts_prog_cc_warnings.m4
share/nextpolish-1.4.1/lib/htslib/md5.c
share/nextpolish-1.4.1/lib/htslib/multipart.c
share/nextpolish-1.4.1/lib/htslib/os/lzma_stub.h
share/nextpolish-1.4.1/lib/htslib/os/rand.c
share/nextpolish-1.4.1/lib/htslib/plugin.c
share/nextpolish-1.4.1/lib/htslib/probaln.c
share/nextpolish-1.4.1/lib/htslib/realn.c
share/nextpolish-1.4.1/lib/htslib/regidx.c
share/nextpolish-1.4.1/lib/htslib/sam.5
share/nextpolish-1.4.1/lib/htslib/sam.c
share/nextpolish-1.4.1/lib/htslib/synced_bcf_reader.c
share/nextpolish-1.4.1/lib/htslib/tabix.1
share/nextpolish-1.4.1/lib/htslib/tabix.c
share/nextpolish-1.4.1/lib/htslib/tbx.c
share/nextpolish-1.4.1/lib/htslib/test/auxf#values.sam
share/nextpolish-1.4.1/lib/htslib/test/auxf#values_java.cram
share/nextpolish-1.4.1/lib/htslib/test/auxf.fa
share/nextpolish-1.4.1/lib/htslib/test/auxf.fa.fai
share/nextpolish-1.4.1/lib/htslib/test/bgziptest.txt
share/nextpolish-1.4.1/lib/htslib/test/bgziptest.txt.gz
share/nextpolish-1.4.1/lib/htslib/test/bgziptest.txt.gz.gzi
share/nextpolish-1.4.1/lib/htslib/test/c1#bounds.sam
share/nextpolish-1.4.1/lib/htslib/test/c1#clip.sam
share/nextpolish-1.4.1/lib/htslib/test/c1#noseq.sam
share/nextpolish-1.4.1/lib/htslib/test/c1#pad1.sam
share/nextpolish-1.4.1/lib/htslib/test/c1#pad2.sam
share/nextpolish-1.4.1/lib/htslib/test/c1#pad3.sam
share/nextpolish-1.4.1/lib/htslib/test/c1#unknown.sam
share/nextpolish-1.4.1/lib/htslib/test/c1.fa
share/nextpolish-1.4.1/lib/htslib/test/c1.fa.fai
share/nextpolish-1.4.1/lib/htslib/test/c2#pad.sam
share/nextpolish-1.4.1/lib/htslib/test/c2.fa
share/nextpolish-1.4.1/lib/htslib/test/c2.fa.fai
share/nextpolish-1.4.1/lib/htslib/test/ce#1.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#1000.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#2.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#5.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#5b.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#5b_java.cram
share/nextpolish-1.4.1/lib/htslib/test/ce#large_seq.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#supp.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#tag_depadded.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#tag_padded.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#unmap.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#unmap1.sam
share/nextpolish-1.4.1/lib/htslib/test/ce#unmap2.sam
share/nextpolish-1.4.1/lib/htslib/test/ce.fa
share/nextpolish-1.4.1/lib/htslib/test/ce.fa.fai
share/nextpolish-1.4.1/lib/htslib/test/compare_sam.pl
share/nextpolish-1.4.1/lib/htslib/test/cross_validate.sh
share/nextpolish-1.4.1/lib/htslib/test/faidx.fa
share/nextpolish-1.4.1/lib/htslib/test/fastqs.fq
share/nextpolish-1.4.1/lib/htslib/test/fastqs_README.txt
share/nextpolish-1.4.1/lib/htslib/test/fieldarith.c
share/nextpolish-1.4.1/lib/htslib/test/fieldarith.sam
share/nextpolish-1.4.1/lib/htslib/test/formatcols.vcf
share/nextpolish-1.4.1/lib/htslib/test/formatmissing-out.vcf
share/nextpolish-1.4.1/lib/htslib/test/formatmissing.vcf
share/nextpolish-1.4.1/lib/htslib/test/hfile.c
share/nextpolish-1.4.1/lib/htslib/test/hts_endian.c
share/nextpolish-1.4.1/lib/htslib/test/md#1.sam
share/nextpolish-1.4.1/lib/htslib/test/md.fa
share/nextpolish-1.4.1/lib/htslib/test/md.fa.fai
share/nextpolish-1.4.1/lib/htslib/test/noroundtrip-out.vcf
share/nextpolish-1.4.1/lib/htslib/test/noroundtrip.vcf
share/nextpolish-1.4.1/lib/htslib/test/range.bam
share/nextpolish-1.4.1/lib/htslib/test/range.bam.bai
share/nextpolish-1.4.1/lib/htslib/test/range.cram
share/nextpolish-1.4.1/lib/htslib/test/range.cram.crai
share/nextpolish-1.4.1/lib/htslib/test/range.out
share/nextpolish-1.4.1/lib/htslib/test/realn01.fa
share/nextpolish-1.4.1/lib/htslib/test/realn01.fa.fai
share/nextpolish-1.4.1/lib/htslib/test/realn01.sam
share/nextpolish-1.4.1/lib/htslib/test/realn01_exp-a.sam
share/nextpolish-1.4.1/lib/htslib/test/realn01_exp-e.sam
share/nextpolish-1.4.1/lib/htslib/test/realn01_exp.sam
share/nextpolish-1.4.1/lib/htslib/test/realn02-r.sam
share/nextpolish-1.4.1/lib/htslib/test/realn02.fa
share/nextpolish-1.4.1/lib/htslib/test/realn02.fa.fai
share/nextpolish-1.4.1/lib/htslib/test/realn02.sam
share/nextpolish-1.4.1/lib/htslib/test/realn02_exp-a.sam
share/nextpolish-1.4.1/lib/htslib/test/realn02_exp-e.sam
share/nextpolish-1.4.1/lib/htslib/test/realn02_exp.sam
share/nextpolish-1.4.1/lib/htslib/test/sam.c
share/nextpolish-1.4.1/lib/htslib/test/tabix/bed_file.Y.100200.out
share/nextpolish-1.4.1/lib/htslib/test/tabix/bed_file.bed
share/nextpolish-1.4.1/lib/htslib/test/tabix/gff_file.X.2934832.2935190.out
share/nextpolish-1.4.1/lib/htslib/test/tabix/gff_file.gff
share/nextpolish-1.4.1/lib/htslib/test/tabix/large_chr.20.1.2147483647.out
share/nextpolish-1.4.1/lib/htslib/test/tabix/large_chr.vcf
share/nextpolish-1.4.1/lib/htslib/test/tabix/tabix.tst
share/nextpolish-1.4.1/lib/htslib/test/tabix/test-tabix.sh
share/nextpolish-1.4.1/lib/htslib/test/tabix/vcf_file.1.3000151.out
share/nextpolish-1.4.1/lib/htslib/test/tabix/vcf_file.2.3199812.out
share/nextpolish-1.4.1/lib/htslib/test/tabix/vcf_file.vcf
share/nextpolish-1.4.1/lib/htslib/test/test-bcf-sr.c
share/nextpolish-1.4.1/lib/htslib/test/test-bcf-sr.pl
share/nextpolish-1.4.1/lib/htslib/test/test-bcf-translate.c
share/nextpolish-1.4.1/lib/htslib/test/test-bcf-translate.out
share/nextpolish-1.4.1/lib/htslib/test/test-logging.pl
share/nextpolish-1.4.1/lib/htslib/test/test-regidx.c
share/nextpolish-1.4.1/lib/htslib/test/test-vcf-api.c
share/nextpolish-1.4.1/lib/htslib/test/test-vcf-api.out
share/nextpolish-1.4.1/lib/htslib/test/test-vcf-hdr-in.vcf
share/nextpolish-1.4.1/lib/htslib/test/test-vcf-hdr.out
share/nextpolish-1.4.1/lib/htslib/test/test-vcf-sweep.c
share/nextpolish-1.4.1/lib/htslib/test/test-vcf-sweep.out
share/nextpolish-1.4.1/lib/htslib/test/test.pl
share/nextpolish-1.4.1/lib/htslib/test/test_bgzf.c
share/nextpolish-1.4.1/lib/htslib/test/test_realn.c
share/nextpolish-1.4.1/lib/htslib/test/test_view.c
share/nextpolish-1.4.1/lib/htslib/test/thrash_threads1.c
share/nextpolish-1.4.1/lib/htslib/test/thrash_threads2.c
share/nextpolish-1.4.1/lib/htslib/test/thrash_threads3.c
share/nextpolish-1.4.1/lib/htslib/test/thrash_threads4.c
share/nextpolish-1.4.1/lib/htslib/test/thrash_threads5.c
share/nextpolish-1.4.1/lib/htslib/test/thrash_threads6.c
share/nextpolish-1.4.1/lib/htslib/test/thread_pool.md
share/nextpolish-1.4.1/lib/htslib/test/xx#blank.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#large_aux.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#large_aux2.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#large_aux_java.cram
share/nextpolish-1.4.1/lib/htslib/test/xx#minimal.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#pair.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#repeated.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#rg.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#tlen.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#tlen2.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#triplet.sam
share/nextpolish-1.4.1/lib/htslib/test/xx#unsorted.sam
share/nextpolish-1.4.1/lib/htslib/test/xx.fa
share/nextpolish-1.4.1/lib/htslib/test/xx.fa.fai
share/nextpolish-1.4.1/lib/htslib/textutils.c
share/nextpolish-1.4.1/lib/htslib/textutils_internal.h
share/nextpolish-1.4.1/lib/htslib/thread_pool.c
share/nextpolish-1.4.1/lib/htslib/thread_pool_internal.h
share/nextpolish-1.4.1/lib/htslib/vcf.5
share/nextpolish-1.4.1/lib/htslib/vcf.c
share/nextpolish-1.4.1/lib/htslib/vcf_sweep.c
share/nextpolish-1.4.1/lib/htslib/vcfutils.c
share/nextpolish-1.4.1/lib/htslib/version.sh
share/nextpolish-1.4.1/lib/kit.py
share/nextpolish-1.4.1/lib/kit.py.bak
share/nextpolish-1.4.1/lib/nextpolish1.py
share/nextpolish-1.4.1/lib/nextpolish1.so
share/nextpolish-1.4.1/lib/nextpolish2.py
share/nextpolish-1.4.1/lib/nextpolish2.so
