.. _more_data:

.. title:: Benchmarking data used in NextDenovo Paper

Benchmarking data used in NextDenovo Paper
-------------------------------------------

1. Data used in error correction

- simulated data
	- `ont.raw.fa.gz <http://obs.grandomics.com/public/error_correction/simulation_data/ont.raw.fa.gz>`__

	- `nextdenovo.cns.fa.gz <http://obs.grandomics.com/public/error_correction/simulation_data/nextdenovo.cns.fa.gz>`__

	- `necat.cns.fa.gz <http://obs.grandomics.com/public/error_correction/simulation_data/necat.cns.fa.gz>`__

	- `canu.cns.fa.gz <http://obs.grandomics.com/public/error_correction/simulation_data/canu.cns.fa.gz>`__

- actual biological data
	- `canu.cns.fa.gz <http://obs.grandomics.com/public/error_correction/actual_biological_data/canu.cns.fa.gz>`__

	- `necat.cns.fa.gz <http://obs.grandomics.com/public/error_correction/actual_biological_data/necat.cns.fa.gz>`__

	- `nextdenovo.cns.fa.gz <http://obs.grandomics.com/public/error_correction/actual_biological_data/nextdenovo.cns.fa.gz>`__
	
	- `ont.raw.fa.gz <http://obs.grandomics.com/public/error_correction/actual_biological_data/ont.raw.fa.gz>`__
	
2. Data used in assembly

- Arabidopsis thaliana
	- `canu.polished.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/canu.polished.fa>`__  
	- `canu.raw.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/canu.raw.fa>`__  
	- `flye.polished.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/flye.polished.fa>`__  
	- `flye.raw.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/flye.raw.fa>`__  
	- `necat.polished.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/necat.polished.fa>`__  
	- `necat.raw.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/necat.raw.fa>`__  
	- `nextdenovo.polished.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/nextdenovo.polished.fa>`__
	- `nextdenovo.raw.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/nextdenovo.raw.fa>`__  
	- `wtdbg.polished.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/wtdbg.polished.fa>`__  
	- `wtdbg.raw.fa <http://obs.grandomics.com/public/assembly/Arabidopsis_thaliana/wtdbg.raw.fa>`__

- Drosophila melanogaster
	- `canu.polished.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/canu.polished.fa>`__  
	- `canu.raw.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/canu.raw.fa>`__  
	- `flye.polished.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/flye.polished.fa>`__  
	- `flye.raw.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/flye.raw.fa>`__  
	- `necat.polished.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/necat.polished.fa>`__  
	- `necat.raw.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/necat.raw.fa>`__  
	- `nextdenovo.polished.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/nextdenovo.polished.fa>`__
	- `nextdenovo.raw.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/nextdenovo.raw.fa>`__  
	- `wtdbg.polished.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/wtdbg.polished.fa>`__  
	- `wtdbg.raw.fa <http://obs.grandomics.com/public/assembly/Drosophila_melanogaster/wtdbg.raw.fa>`__

- Oryza sativa
	- `canu.polished.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/canu.polished.fa>`__  
	- `canu.raw.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/canu.raw.fa>`__  
	- `flye.polished.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/flye.polished.fa>`__  
	- `flye.raw.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/flye.raw.fa>`__  
	- `necat.polished.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/necat.polished.fa>`__  
	- `necat.raw.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/necat.raw.fa>`__  
	- `nextdenovo.polished.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/nextdenovo.polished.fa>`__
	- `nextdenovo.raw.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/nextdenovo.raw.fa>`__  
	- `wtdbg.polished.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/wtdbg.polished.fa>`__  
	- `wtdbg.raw.fa <http://obs.grandomics.com/public/assembly/Oryza_sativa/wtdbg.raw.fa>`__

- Zea mays
	- `canu.polished.fa <http://obs.grandomics.com/public/assembly/Zea_mays/canu.polished.fa>`__  
	- `canu.raw.fa <http://obs.grandomics.com/public/assembly/Zea_mays/canu.raw.fa>`__  
	- `flye.polished.fa <http://obs.grandomics.com/public/assembly/Zea_mays/flye.polished.fa>`__  
	- `flye.raw.fa <http://obs.grandomics.com/public/assembly/Zea_mays/flye.raw.fa>`__  
	- `necat.polished.fa <http://obs.grandomics.com/public/assembly/Zea_mays/necat.polished.fa>`__  
	- `necat.raw.fa <http://obs.grandomics.com/public/assembly/Zea_mays/necat.raw.fa>`__  
	- `nextdenovo.polished.fa <http://obs.grandomics.com/public/assembly/Zea_mays/nextdenovo.polished.fa>`__
	- `nextdenovo.raw.fa <http://obs.grandomics.com/public/assembly/Zea_mays/nextdenovo.raw.fa>`__  
	- `wtdbg.polished.fa <http://obs.grandomics.com/public/assembly/Zea_mays/wtdbg.polished.fa>`__  
	- `wtdbg.raw.fa <http://obs.grandomics.com/public/assembly/Zea_mays/wtdbg.raw.fa>`__
