# Copyright (c) 2008-2025 the MRtrix3 contributors.
#
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
#
# Covered Software is provided under this License on an "as is"
# basis, without warranty of any kind, either expressed, implied, or
# statutory, including, without limitation, warranties that the
# Covered Software is free of defects, merchantable, fit for a
# particular purpose or non-infringing.
# See the Mozilla Public License v. 2.0 for more details.
#
# For more details, see http://www.mrtrix.org/.

# Lookup table for MRtrix command labelconvert
# Extracts the relevant grey matter parcellations from the default FreeSurfer segmentation (desikan_killiany), but segmentations are summarised into lobes and subcortical areas
# Cingulate nodes are included in the (approximately) relevant lobes
# This file is intended to be used for the label conversion process; the corresponding lookup table for interpreting the resulting labels is: fs2lobes_cinginc_labels.txt


0     Unknown

4     ctx-lh-bankssts
1     ctx-lh-caudalanteriorcingulate
1     ctx-lh-caudalmiddlefrontal
3     ctx-lh-cuneus
4     ctx-lh-entorhinal
4     ctx-lh-fusiform
2     ctx-lh-inferiorparietal
4     ctx-lh-inferiortemporal
2     ctx-lh-isthmuscingulate
3     ctx-lh-lateraloccipital
1     ctx-lh-lateralorbitofrontal
3     ctx-lh-lingual
1     ctx-lh-medialorbitofrontal
4     ctx-lh-middletemporal
4     ctx-lh-parahippocampal
1     ctx-lh-paracentral
1     ctx-lh-parsopercularis
1     ctx-lh-parsorbitalis
1     ctx-lh-parstriangularis
3     ctx-lh-pericalcarine
2     ctx-lh-postcentral
2     ctx-lh-posteriorcingulate
1     ctx-lh-precentral
2     ctx-lh-precuneus
1     ctx-lh-rostralanteriorcingulate
1     ctx-lh-rostralmiddlefrontal
1     ctx-lh-superiorfrontal
2     ctx-lh-superiorparietal
4     ctx-lh-superiortemporal
2     ctx-lh-supramarginal
1     ctx-lh-frontalpole
4     ctx-lh-temporalpole
4     ctx-lh-transversetemporal
#x    ctx-lh-insula

5     Left-Cerebellum-Cortex

6     Left-Thalamus
6     Left-Thalamus-Proper
6     Left-Caudate
6     Left-Putamen
6     Left-Pallidum
6     Left-Hippocampus
6     Left-Amygdala
6     Left-Accumbens-area

7     Right-Thalamus
7     Right-Thalamus-Proper
7     Right-Caudate
7     Right-Putamen
7     Right-Pallidum
7     Right-Hippocampus
7     Right-Amygdala
7     Right-Accumbens-area

8     Right-Cerebellum-Cortex

9     ctx-rh-bankssts
12    ctx-rh-caudalanteriorcingulate
12    ctx-rh-caudalmiddlefrontal
10    ctx-rh-cuneus
9     ctx-rh-entorhinal
9     ctx-rh-fusiform
11    ctx-rh-inferiorparietal
9     ctx-rh-inferiortemporal
11    ctx-rh-isthmuscingulate
10    ctx-rh-lateraloccipital
12    ctx-rh-lateralorbitofrontal
10    ctx-rh-lingual
12    ctx-rh-medialorbitofrontal
9     ctx-rh-middletemporal
9     ctx-rh-parahippocampal
12    ctx-rh-paracentral
12    ctx-rh-parsopercularis
12    ctx-rh-parsorbitalis
12    ctx-rh-parstriangularis
10    ctx-rh-pericalcarine
11    ctx-rh-postcentral
11    ctx-rh-posteriorcingulate
12    ctx-rh-precentral
11    ctx-rh-precuneus
12    ctx-rh-rostralanteriorcingulate
12    ctx-rh-rostralmiddlefrontal
12    ctx-rh-superiorfrontal
11    ctx-rh-superiorparietal
9     ctx-rh-superiortemporal
11    ctx-rh-supramarginal
12    ctx-rh-frontalpole
9     ctx-rh-temporalpole
9     ctx-rh-transversetemporal
#x    ctx-rh-insula

