package:
  name: misopy
  version: "0.5.4"

source:
  url: https://pypi.python.org/packages/1e/1c/1ee24b5ed82b1c3b673345ecfc5e7a505273cfe5b450d6fc05479f1ad641/misopy-0.5.4.tar.gz
  md5: fe0c9c2613304defbdead12ea99e4194
  patches:
    - patch

build:
  entry_points:
    - module_availability = misopy.module_availability:main
    - sam_to_bam = misopy.sam_to_bam:main
    - run_events_analysis.py = misopy.run_events_analysis:main
    - run_miso.py = misopy.run_miso:main
    - exon_utils = misopy.exon_utils:main
    - pe_utils = misopy.pe_utils:main
    - filter_events = misopy.filter_events:main
    - test_miso = misopy.test_miso:main
    - miso_zip = misopy.miso_zip:main
    - miso = misopy.miso:main
    - compare_miso = misopy.compare_miso:main
    - summarize_miso = misopy.summarize_miso:main
    - index_gff = misopy.index_gff:main
    - miso_pack = misopy.miso_pack:main
    - plot.py = misopy.sashimi_plot.plot:main
    - sashimi_plot = misopy.sashimi_plot.sashimi_plot:main
  number: 5
  skip: True  # [not py27]

requirements:
  build:
    - {{ compiler('c') }}
  host:
    - python
    - setuptools
    - matplotlib
    - numpy >=1.5.0
    - scipy >=0.9.0
    - pysam >=0.6.0
  run:
    - python
    - matplotlib
    - numpy >=1.5.0
    - scipy >=0.9.0
    - pysam >=0.6.0
    - samtools <=1.2
    - bedtools

test:
  imports:
    - misopy
    - misopy.sashimi_plot
    - misopy.sashimi_plot.plot_utils
    - pysplicing
  commands:
    - module_availability --help
    - sam_to_bam --help
    - run_events_analysis.py --help
    - run_miso.py --help
    - exon_utils --help
    - pe_utils --help
    - filter_events --help
    - miso_zip --help
    - miso --help
    - compare_miso --help
    - summarize_miso --help
    - index_gff --help
    - miso_pack --help
    - plot.py --help
    - sashimi_plot --help

about:
  home: http://genes.mit.edu/burgelab/miso/
  license: GPL2
  summary: 'Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq'
  license_family: GPL2
