# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Feb 23 21:34:51 2022
# ------------------------------------------------

package:
  name: misopy
  version: 0.5.4
source:
  md5: fe0c9c2613304defbdead12ea99e4194
  patches:
    - patch
  url: https://pypi.python.org/packages/1e/1c/1ee24b5ed82b1c3b673345ecfc5e7a505273cfe5b450d6fc05479f1ad641/misopy-0.5.4.tar.gz
build:
  entry_points:
    - compare_miso = misopy.compare_miso:main
    - exon_utils = misopy.exon_utils:main
    - filter_events = misopy.filter_events:main
    - index_gff = misopy.index_gff:main
    - miso = misopy.miso:main
    - miso_pack = misopy.miso_pack:main
    - miso_zip = misopy.miso_zip:main
    - module_availability = misopy.module_availability:main
    - pe_utils = misopy.pe_utils:main
    - plot.py = misopy.sashimi_plot.plot:main
    - run_events_analysis.py = misopy.run_events_analysis:main
    - run_miso.py = misopy.run_miso:main
    - sam_to_bam = misopy.sam_to_bam:main
    - sashimi_plot = misopy.sashimi_plot.sashimi_plot:main
    - summarize_miso = misopy.summarize_miso:main
    - test_miso = misopy.test_miso:main
  number: '5'
  string: py27h9801fc8_5
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_5
    - gcc_impl_linux-64 10.3.0 hf2f2afa_12
    - gcc_linux-64 10.3.0 hc39de41_5
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 10.3.0 he6cfe16_12
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgomp 11.2.0 h1d223b6_12
    - libsanitizer 10.3.0 h26c7422_12
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - backports 1.0 py_2
    - backports.functools_lru_cache 1.6.1 py_0
    - backports_abc 0.5 py_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2021.10.8 ha878542_0
    - certifi 2019.11.28 py27h8c360ce_1
    - cycler 0.10.0 py_2
    - dbus 1.13.6 hfdff14a_1
    - expat 2.4.6 h27087fc_0
    - fontconfig 2.13.1 hba837de_1005
    - freetype 2.10.4 h0708190_1
    - functools32 3.2.3.2 py_3
    - futures 3.3.0 py27h8c360ce_1
    - gettext 0.19.8.1 hf34092f_1004
    - glib 2.66.3 h58526e2_0
    - gst-plugins-base 1.14.5 h0935bb2_2
    - gstreamer 1.14.5 h36ae1b5_2
    - icu 64.2 he1b5a44_1
    - jpeg 9e h7f98852_0
    - kiwisolver 1.1.0 py27h9e3301b_1
    - krb5 1.19.2 hcc1bbae_3
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libblas 3.9.0 8_openblas
    - libcblas 3.9.0 8_openblas
    - libcurl 7.81.0 h2574ce0_0
    - libdeflate 1.10 h7f98852_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.2.1 he1b5a44_1007
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgfortran-ng 7.5.0 h14aa051_20
    - libgfortran4 7.5.0 h14aa051_20
    - libglib 2.66.3 hbe7bbb4_0
    - libgomp 11.2.0 h1d223b6_12
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 8_openblas
    - libnghttp2 1.47.0 h727a467_0
    - libopenblas 0.3.12 pthreads_hb3c22a3_1
    - libpng 1.6.37 h21135ba_2
    - libssh2 1.10.0 ha56f1ee_2
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - libuuid 2.32.1 h7f98852_1000
    - libxcb 1.13 h7f98852_1004
    - libxml2 2.9.10 hee79883_0
    - libzlib 1.2.11 h36c2ea0_1013
    - matplotlib 2.2.5 ha770c72_3
    - matplotlib-base 2.2.5 py27h250f245_1
    - ncurses 6.3 h9c3ff4c_0
    - numpy 1.16.5 py27h95a1406_0
    - openssl 1.1.1l h7f98852_0
    - pcre 8.45 h9c3ff4c_0
    - pip 20.1.1 pyh9f0ad1d_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - pyparsing 2.4.7 pyh9f0ad1d_0
    - pyqt 5.9.2 py27hcca6a23_4
    - pysam 0.18.0 py27hc2126ed_1
    - python 2.7.15 h5a48372_1011_cpython
    - python-dateutil 2.8.1 py_0
    - python_abi 2.7 1_cp27mu
    - pytz 2020.1 pyh9f0ad1d_0
    - qt 5.9.7 h0c104cb_3
    - readline 8.1 h46c0cb4_0
    - scipy 1.2.1 py27h921218d_2
    - setuptools 44.0.0 py27_0
    - singledispatch 3.6.1 pyh44b312d_0
    - sip 4.19.8 py27hf484d3e_1000
    - six 1.16.0 pyh6c4a22f_0
    - sqlite 3.37.0 h9cd32fc_0
    - subprocess32 3.5.4 py27h516909a_0
    - tk 8.6.12 h27826a3_0
    - tornado 5.1.1 py27h14c3975_1000
    - wheel 0.37.1 pyhd8ed1ab_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
  run:
    - bedtools
    - libgcc-ng >=10.3.0
    - matplotlib
    - numpy >=1.5.0
    - pysam >=0.6.0
    - python >=2.7,<2.8.0a0
    - python_abi 2.7.* *_cp27mu
    - samtools <=1.2
    - scipy >=0.9.0
test:
  commands:
    - module_availability --help
    - sam_to_bam --help
    - run_events_analysis.py --help
    - run_miso.py --help
    - exon_utils --help
    - pe_utils --help
    - filter_events --help
    - miso_zip --help
    - miso --help
    - compare_miso --help
    - summarize_miso --help
    - index_gff --help
    - miso_pack --help
    - plot.py --help
    - sashimi_plot --help
  imports:
    - misopy
    - misopy.sashimi_plot
    - misopy.sashimi_plot.plot_utils
    - pysplicing
about:
  home: http://genes.mit.edu/burgelab/miso/
  license: GPL2
  license_family: GPL2
  summary: Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
extra:
  copy_test_source_files: true
  final: true
