MANIFEST.in
README
setup.cfg
setup.py
misopy/Gene.py
misopy/__init__.py
misopy/as_events.py
misopy/cluster_utils.py
misopy/compare_miso.py
misopy/credible_intervals.py
misopy/exon_utils.py
misopy/filter_events.py
misopy/gff_utils.py
misopy/hypothesis_test.py
misopy/index_gff.py
misopy/json_utils.py
misopy/kde_subclass.py
misopy/legacy_test_pysplicing.py
misopy/misc_utils.py
misopy/miso.py
misopy/miso_db.py
misopy/miso_pack.py
misopy/miso_sampler.py
misopy/miso_utils.py
misopy/miso_zip.py
misopy/module_availability.py
misopy/parse_csv.py
misopy/parse_gene.py
misopy/pe_utils.py
misopy/pickle_utils.py
misopy/py2c_gene.py
misopy/read_simulator.py
misopy/reads_utils.py
misopy/run_events_analysis.py
misopy/run_miso.py
misopy/sam_rpkm.py
misopy/sam_to_bam.py
misopy/sam_utils.py
misopy/samples_utils.py
misopy/settings.py
misopy/summarize_miso.py
misopy/test_cluster.py
misopy/test_miso.py
misopy.egg-info/PKG-INFO
misopy.egg-info/SOURCES.txt
misopy.egg-info/dependency_links.txt
misopy.egg-info/entry_points.txt
misopy.egg-info/pbr.json
misopy.egg-info/requires.txt
misopy.egg-info/top_level.txt
misopy/gff-events/mm9/SE.mm9.gff
misopy/gff-events/mm9/genes/Atp2b1.mm9.gff
misopy/sashimi_plot/Sashimi.py
misopy/sashimi_plot/__init__.py
misopy/sashimi_plot/plot.py
misopy/sashimi_plot/sashimi_plot.py
misopy/sashimi_plot/plot_utils/__init__.py
misopy/sashimi_plot/plot_utils/plot_gene.py
misopy/sashimi_plot/plot_utils/plot_settings.py
misopy/sashimi_plot/plot_utils/plotting.py
misopy/sashimi_plot/plot_utils/samples_plotter.py
misopy/sashimi_plot/settings/sashimi_plot_settings.txt
misopy/sashimi_plot/test-data/events.gff
misopy/sashimi_plot/test-data/bam-data/heartKOa.bam.bai
misopy/sashimi_plot/test-data/bam-data/heartKOa.sorted.bam
misopy/sashimi_plot/test-data/bam-data/heartKOa.sorted.bam.bai
misopy/sashimi_plot/test-data/bam-data/heartKOb.sorted.bam
misopy/sashimi_plot/test-data/bam-data/heartKOb.sorted.bam.bai
misopy/sashimi_plot/test-data/bam-data/heartWT1.sorted.bam
misopy/sashimi_plot/test-data/bam-data/heartWT1.sorted.bam.bai
misopy/sashimi_plot/test-data/bam-data/heartWT2.sorted.bam
misopy/sashimi_plot/test-data/bam-data/heartWT2.sorted.bam.bai
misopy/sashimi_plot/test-data/miso-data/heartKOa/chr17/chr17:45816186:45816265:-@chr17:45815912:45815950:-@chr17:45814875:45814965:-.miso
misopy/sashimi_plot/test-data/miso-data/heartKOb/chr17/chr17:45816186:45816265:-@chr17:45815912:45815950:-@chr17:45814875:45814965:-.miso
misopy/sashimi_plot/test-data/miso-data/heartWT1/chr17/chr17:45816186:45816265:-@chr17:45815912:45815950:-@chr17:45814875:45814965:-.miso
misopy/sashimi_plot/test-data/miso-data/heartWT2/chr17/chr17:45816186:45816265:-@chr17:45815912:45815950:-@chr17:45814875:45814965:-.miso
misopy/settings/miso_settings.txt
misopy/test-data/sam-data/c2c12.Atp2b1.sam
pysplicing/include/f2c.h
pysplicing/include/matrix.pmt
pysplicing/include/pyerror.h
pysplicing/include/pysplicing.h
pysplicing/include/random.h
pysplicing/include/splicing.h
pysplicing/include/splicing_error.h
pysplicing/include/splicing_lapack.h
pysplicing/include/splicing_matrix.h
pysplicing/include/splicing_matrix_pmt.h
pysplicing/include/splicing_memory.h
pysplicing/include/splicing_pmt.h
pysplicing/include/splicing_pmt_off.h
pysplicing/include/splicing_random.h
pysplicing/include/splicing_vector.h
pysplicing/include/splicing_vector_pmt.h
pysplicing/include/vector.pmt
pysplicing/pysplicing/__init__.py
pysplicing/src/assignment.c
pysplicing/src/blas.c
pysplicing/src/complexity.c
pysplicing/src/convert.c
pysplicing/src/error.c
pysplicing/src/fortran_stuff.c
pysplicing/src/gff.c
pysplicing/src/ident.c
pysplicing/src/lapack.c
pysplicing/src/lawson_hanson_nnls.c
pysplicing/src/matrix.c
pysplicing/src/memory.c
pysplicing/src/miso.c
pysplicing/src/miso_paired.c
pysplicing/src/nnls.c
pysplicing/src/pyconvert.c
pysplicing/src/pyerror.c
pysplicing/src/pyrandom.c
pysplicing/src/pysplicing.c
pysplicing/src/qsort.c
pysplicing/src/qsort_r.c
pysplicing/src/random.c
pysplicing/src/simulator.c
pysplicing/src/solve.c
pysplicing/src/strvector.c
pysplicing/src/util.c
pysplicing/src/vector.c
pysplicing/src/f2c/Notice
pysplicing/src/f2c/README
pysplicing/src/f2c/abort_.c
pysplicing/src/f2c/arith.h
pysplicing/src/f2c/backspac.c
pysplicing/src/f2c/c_abs.c
pysplicing/src/f2c/c_cos.c
pysplicing/src/f2c/c_div.c
pysplicing/src/f2c/c_exp.c
pysplicing/src/f2c/c_log.c
pysplicing/src/f2c/c_sin.c
pysplicing/src/f2c/c_sqrt.c
pysplicing/src/f2c/cabs.c
pysplicing/src/f2c/changes
pysplicing/src/f2c/close.c
pysplicing/src/f2c/comptry.bat
pysplicing/src/f2c/ctype.c
pysplicing/src/f2c/d_abs.c
pysplicing/src/f2c/d_acos.c
pysplicing/src/f2c/d_asin.c
pysplicing/src/f2c/d_atan.c
pysplicing/src/f2c/d_atn2.c
pysplicing/src/f2c/d_cnjg.c
pysplicing/src/f2c/d_cos.c
pysplicing/src/f2c/d_cosh.c
pysplicing/src/f2c/d_dim.c
pysplicing/src/f2c/d_exp.c
pysplicing/src/f2c/d_imag.c
pysplicing/src/f2c/d_int.c
pysplicing/src/f2c/d_lg10.c
pysplicing/src/f2c/d_log.c
pysplicing/src/f2c/d_mod.c
pysplicing/src/f2c/d_nint.c
pysplicing/src/f2c/d_prod.c
pysplicing/src/f2c/d_sin.c
pysplicing/src/f2c/d_sinh.c
pysplicing/src/f2c/d_sqrt.c
pysplicing/src/f2c/d_tan.c
pysplicing/src/f2c/d_tanh.c
pysplicing/src/f2c/derf_.c
pysplicing/src/f2c/derfc_.c
pysplicing/src/f2c/dfe.c
pysplicing/src/f2c/dolio.c
pysplicing/src/f2c/dtime_.c
pysplicing/src/f2c/due.c
pysplicing/src/f2c/dummy.c
pysplicing/src/f2c/ef1asc_.c
pysplicing/src/f2c/ef1cmc_.c
pysplicing/src/f2c/endfile.c
pysplicing/src/f2c/erf_.c
pysplicing/src/f2c/erfc_.c
pysplicing/src/f2c/err.c
pysplicing/src/f2c/etime_.c
pysplicing/src/f2c/exit_.c
pysplicing/src/f2c/f2c.h
pysplicing/src/f2c/f2c.h0
pysplicing/src/f2c/f2ch.add
pysplicing/src/f2c/f77_aloc.c
pysplicing/src/f2c/f77vers.c
pysplicing/src/f2c/fctype.h
pysplicing/src/f2c/fio.h
pysplicing/src/f2c/fmt.c
pysplicing/src/f2c/fmt.h
pysplicing/src/f2c/fmtlib.c
pysplicing/src/f2c/fp.h
pysplicing/src/f2c/ftell_.c
pysplicing/src/f2c/getarg_.c
pysplicing/src/f2c/getenv_.c
pysplicing/src/f2c/h_abs.c
pysplicing/src/f2c/h_dim.c
pysplicing/src/f2c/h_dnnt.c
pysplicing/src/f2c/h_indx.c
pysplicing/src/f2c/h_len.c
pysplicing/src/f2c/h_mod.c
pysplicing/src/f2c/h_nint.c
pysplicing/src/f2c/h_sign.c
pysplicing/src/f2c/hl_ge.c
pysplicing/src/f2c/hl_gt.c
pysplicing/src/f2c/hl_le.c
pysplicing/src/f2c/hl_lt.c
pysplicing/src/f2c/i77vers.c
pysplicing/src/f2c/i_abs.c
pysplicing/src/f2c/i_dim.c
pysplicing/src/f2c/i_dnnt.c
pysplicing/src/f2c/i_indx.c
pysplicing/src/f2c/i_len.c
pysplicing/src/f2c/i_mod.c
pysplicing/src/f2c/i_nint.c
pysplicing/src/f2c/i_sign.c
pysplicing/src/f2c/iargc_.c
pysplicing/src/f2c/iio.c
pysplicing/src/f2c/ilnw.c
pysplicing/src/f2c/inquire.c
pysplicing/src/f2c/l_ge.c
pysplicing/src/f2c/l_gt.c
pysplicing/src/f2c/l_le.c
pysplicing/src/f2c/l_lt.c
pysplicing/src/f2c/lbitbits.c
pysplicing/src/f2c/lbitshft.c
pysplicing/src/f2c/libf2c.lbc
pysplicing/src/f2c/libf2c.sy
pysplicing/src/f2c/lio.h
pysplicing/src/f2c/lread.c
pysplicing/src/f2c/lwrite.c
pysplicing/src/f2c/main.c
pysplicing/src/f2c/makefile.sy
pysplicing/src/f2c/makefile.u
pysplicing/src/f2c/makefile.vc
pysplicing/src/f2c/makefile.wat
pysplicing/src/f2c/math.hvc
pysplicing/src/f2c/mkfile.plan9
pysplicing/src/f2c/open.c
pysplicing/src/f2c/pow_ci.c
pysplicing/src/f2c/pow_dd.c
pysplicing/src/f2c/pow_di.c
pysplicing/src/f2c/pow_hh.c
pysplicing/src/f2c/pow_ii.c
pysplicing/src/f2c/pow_ri.c
pysplicing/src/f2c/pow_zi.c
pysplicing/src/f2c/pow_zz.c
pysplicing/src/f2c/r_abs.c
pysplicing/src/f2c/r_acos.c
pysplicing/src/f2c/r_asin.c
pysplicing/src/f2c/r_atan.c
pysplicing/src/f2c/r_atn2.c
pysplicing/src/f2c/r_cnjg.c
pysplicing/src/f2c/r_cos.c
pysplicing/src/f2c/r_cosh.c
pysplicing/src/f2c/r_dim.c
pysplicing/src/f2c/r_exp.c
pysplicing/src/f2c/r_imag.c
pysplicing/src/f2c/r_int.c
pysplicing/src/f2c/r_lg10.c
pysplicing/src/f2c/r_log.c
pysplicing/src/f2c/r_mod.c
pysplicing/src/f2c/r_nint.c
pysplicing/src/f2c/r_sign.c
pysplicing/src/f2c/r_sin.c
pysplicing/src/f2c/r_sinh.c
pysplicing/src/f2c/r_sqrt.c
pysplicing/src/f2c/r_tan.c
pysplicing/src/f2c/r_tanh.c
pysplicing/src/f2c/rawio.h
pysplicing/src/f2c/rdfmt.c
pysplicing/src/f2c/rewind.c
pysplicing/src/f2c/rsfe.c
pysplicing/src/f2c/rsli.c
pysplicing/src/f2c/rsne.c
pysplicing/src/f2c/s_cat.c
pysplicing/src/f2c/s_cmp.c
pysplicing/src/f2c/s_copy.c
pysplicing/src/f2c/s_paus.c
pysplicing/src/f2c/s_rnge.c
pysplicing/src/f2c/s_stop.c
pysplicing/src/f2c/scomptry.bat
pysplicing/src/f2c/sfe.c
pysplicing/src/f2c/sig_die.c
pysplicing/src/f2c/signal1.h
pysplicing/src/f2c/signal1.h0
pysplicing/src/f2c/signal_.c
pysplicing/src/f2c/signbit.c
pysplicing/src/f2c/sue.c
pysplicing/src/f2c/sysdep1.h
pysplicing/src/f2c/sysdep1.h0
pysplicing/src/f2c/system_.c
pysplicing/src/f2c/typesize.c
pysplicing/src/f2c/uio.c
pysplicing/src/f2c/uninit.c
pysplicing/src/f2c/util.c
pysplicing/src/f2c/wref.c
pysplicing/src/f2c/wrtfmt.c
pysplicing/src/f2c/wsfe.c
pysplicing/src/f2c/wsle.c
pysplicing/src/f2c/wsne.c
pysplicing/src/f2c/xsum0.out
pysplicing/src/f2c/xwsne.c
pysplicing/src/f2c/z_abs.c
pysplicing/src/f2c/z_cos.c
pysplicing/src/f2c/z_div.c
pysplicing/src/f2c/z_exp.c
pysplicing/src/f2c/z_log.c
pysplicing/src/f2c/z_sin.c
pysplicing/src/f2c/z_sqrt.c
pysplicing/src/lapack/blas.inc
pysplicing/src/lapack/dbdsdc.c
pysplicing/src/lapack/dbdsqr.c
pysplicing/src/lapack/dcopy.c
pysplicing/src/lapack/ddot.c
pysplicing/src/lapack/debug.h
pysplicing/src/lapack/dgebd2.c
pysplicing/src/lapack/dgebrd.c
pysplicing/src/lapack/dgelq2.c
pysplicing/src/lapack/dgelqf.c
pysplicing/src/lapack/dgemm.c
pysplicing/src/lapack/dgemv.c
pysplicing/src/lapack/dgeqr2.c
pysplicing/src/lapack/dgeqrf.c
pysplicing/src/lapack/dger.c
pysplicing/src/lapack/dgesdd.c
pysplicing/src/lapack/disnan.c
pysplicing/src/lapack/dlabrd.c
pysplicing/src/lapack/dlacpy.c
pysplicing/src/lapack/dlaed6.c
pysplicing/src/lapack/dlaisnan.c
pysplicing/src/lapack/dlamch.c
pysplicing/src/lapack/dlamrg.c
pysplicing/src/lapack/dlange.c
pysplicing/src/lapack/dlanst.c
pysplicing/src/lapack/dlapy2.c
pysplicing/src/lapack/dlarf.c
pysplicing/src/lapack/dlarfb.c
pysplicing/src/lapack/dlarfg.c
pysplicing/src/lapack/dlarft.c
pysplicing/src/lapack/dlartg.c
pysplicing/src/lapack/dlas2.c
pysplicing/src/lapack/dlascl.c
pysplicing/src/lapack/dlasd0.c
pysplicing/src/lapack/dlasd1.c
pysplicing/src/lapack/dlasd2.c
pysplicing/src/lapack/dlasd3.c
pysplicing/src/lapack/dlasd4.c
pysplicing/src/lapack/dlasd5.c
pysplicing/src/lapack/dlasd6.c
pysplicing/src/lapack/dlasd7.c
pysplicing/src/lapack/dlasd8.c
pysplicing/src/lapack/dlasda.c
pysplicing/src/lapack/dlasdq.c
pysplicing/src/lapack/dlasdt.c
pysplicing/src/lapack/dlaset.c
pysplicing/src/lapack/dlasq1.c
pysplicing/src/lapack/dlasq2.c
pysplicing/src/lapack/dlasq3.c
pysplicing/src/lapack/dlasq4.c
pysplicing/src/lapack/dlasq5.c
pysplicing/src/lapack/dlasq6.c
pysplicing/src/lapack/dlasr.c
pysplicing/src/lapack/dlasrt.c
pysplicing/src/lapack/dlassq.c
pysplicing/src/lapack/dlasv2.c
pysplicing/src/lapack/dnrm2.c
pysplicing/src/lapack/dorg2r.c
pysplicing/src/lapack/dorgbr.c
pysplicing/src/lapack/dorgl2.c
pysplicing/src/lapack/dorglq.c
pysplicing/src/lapack/dorgqr.c
pysplicing/src/lapack/dorm2r.c
pysplicing/src/lapack/dormbr.c
pysplicing/src/lapack/dorml2.c
pysplicing/src/lapack/dormlq.c
pysplicing/src/lapack/dormqr.c
pysplicing/src/lapack/drot.c
pysplicing/src/lapack/dscal.c
pysplicing/src/lapack/dswap.c
pysplicing/src/lapack/dtrmm.c
pysplicing/src/lapack/dtrmv.c
pysplicing/src/lapack/ieeeck.c
pysplicing/src/lapack/iladlc.c
pysplicing/src/lapack/iladlr.c
pysplicing/src/lapack/ilaenv.c
pysplicing/src/lapack/iparmq.c
pysplicing/src/lapack/lapack.inc
pysplicing/src/lapack/len_trim.c
pysplicing/src/lapack/lsame.c
pysplicing/src/lapack/stat.h
pysplicing/src/lapack/xerbla.c