# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Aug  1 15:17:33 2022
# ------------------------------------------------

package:
  name: mindthegap
  version: 2.3.0
source:
  sha256: 588d1c0a7560a0fad657b9396c9cb85e4133ac2daa96fa9fe22866a0c0398ffc
  url: https://github.com/GATB/mindthegap/releases/download/v2.3.0/mindthegap-v2.3.0-Source.tar.gz
build:
  number: '1'
  string: hd03093a_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_10
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.6.15 ha878542_0
    - cmake 3.23.3 h5432695_0
    - expat 2.4.8 h27087fc_0
    - gcc_impl_linux-64 10.4.0 h7ee1905_16
    - gcc_linux-64 10.4.0 h9215b83_10
    - gxx_impl_linux-64 10.4.0 h7ee1905_16
    - gxx_linux-64 10.4.0 h6e491c6_10
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h08a2579_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libcurl 7.83.1 h2283fc2_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-devel_linux-64 10.4.0 h74af60c_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libnghttp2 1.47.0 he49606f_0
    - libsanitizer 10.4.0 hde28e3b_16
    - libssh2 1.10.0 ha35d2d1_2
    - libstdcxx-devel_linux-64 10.4.0 h74af60c_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libuv 1.44.2 h166bdaf_0
    - libzlib 1.2.12 h166bdaf_2
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.5 h166bdaf_0
    - rhash 1.4.3 h166bdaf_0
    - sysroot_linux-64 2.12 he073ed8_15
    - xz 5.2.5 h516909a_1
    - zlib 1.2.12 h166bdaf_2
    - zstd 1.5.2 h8a70e8d_2
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libzlib 1.2.12 h166bdaf_2
    - zlib 1.2.12 h166bdaf_2
  run:
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - libzlib >=1.2.12,<1.3.0a0
    - zlib >=1.2.12,<1.3.0a0
test:
  commands:
    - MindTheGap fill -help
about:
  home: https://github.com/GATB/mindthegap
  licence_family: GNU 3.0+
  license: AGPL-3.0-or-later
  license_file: LICENSE
  summary: MindTheGap performs detection and assembly of DNA insertion variants in
    NGS read datasets with respect to a reference genome. MindTheGap can also be used
    as a genome assembly finishing tool, it can fill the gaps between a set of input
    contigs without any a priori on their relative order and orientation.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:mindthegap
    - doi:10.1093/bioinformatics/btu545
