wheel>=0.28.0
pyyaml
jsonschema
cython>=0.25
numpy
networkx>=1.10
sqlalchemy>=1
sqlalchemy_utils
biopython>=1.66
intervaltree
nose
pyfaidx
scikit-learn>=0.17.0
scipy>=0.15.0
frozendict
python-magic
drmaa
docutils!=0.13.1
tabulate
ujson
simplejson

[:python_version < "3.5"]
snakemake<4.0.0

[:python_version >= "3.5"]
snakemake

[bam]
pysam>=0.8

[mysql]
mysqlclient>=1.3.6

[postgresql]
psycopg2
