<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<mcast version="5.5.6" release="Wed Jun 19 13:59:04 2024 -0700">
<command-line>mcast --oc mcast_example_output_files Klf1.streme Klf1.fna</command-line>
<sequence-data num-sequences="904" num-residues="452000" />
<alphabet>nucleotide</alphabet>
<motif name="1-RGCCACACCCWNNBY" width="15" best-possible-match="AGCCACACCCAGACC" best-possible-rc-match="GGTCTGGGTGTGGCT"/>
<motif name="2-CTCCACCCAK" width="10" best-possible-match="CTCCACCCAT" best-possible-rc-match="ATGGGTGGAG"/>
<motif name="3-RGAGATAAGRVD" width="12" best-possible-match="GGAGATAAGGAT" best-possible-rc-match="ATCCTTATCTCC"/>
<motif name="4-CCCKCCCTYC" width="10" best-possible-match="CCCTCCCTCC" best-possible-rc-match="GGAGGGAGGG"/>
<motif name="5-AAAATRAAANMCA" width="13" best-possible-match="AAAATGAAATACA" best-possible-rc-match="TGTATTTCATTTT"/>
<motif name="6-CCCCACCCC" width="9" best-possible-match="CCCCACCCC" best-possible-rc-match="GGGGTGGGG"/>
<motif name="7-AAAACAAACCTAG" width="13" best-possible-match="AAAACAAACCTAG" best-possible-rc-match="CTAGGTTTGTTTT"/>
<background source="non-redundant database">
<value letter="A">0.275</value>
<value letter="C">0.225</value>
<value letter="G">0.225</value>
<value letter="T">0.275</value>
</background>
<cisml-file>cisml.xml</cisml-file>
<mcast-parameters>
<min-match-score>3.020</min-match-score>
<e-thresh>10.000</e-thresh>
<p-thresh>1.000</p-thresh>
<q-thresh>1.000</q-thresh>
<max-gap>50</max-gap>
<max-total-width>-1</max-total-width>
<cost-factor>1</cost-factor>
<gap-open-cost>0.0604</gap-open-cost>
<gap-extend-cost>0.0604</gap-extend-cost>
</mcast-parameters>
<e-value-parameters>
<distribution>exponential</distribution>
<status>Distribution estimated successfully.</status>
<mu1>7.41</mu1>
<mu2>51.2</mu2>
<sigma2>3.43</sigma2>
<c>1</c>
<num-scores-used>1000</num-scores-used>
<num-matches>1088</num-matches>
<db-length>452000</db-length>
</e-value-parameters>
</mcast>
