Invoking:
  getsize nrmix.nseqs.100.100bp.seed.1.fa 1> $metrics
Finished invoke:
  name: count_primary_seqs  status: 0  time: 0.028731
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 -pseudo 1 nrmix.nseqs.100.100bp.seed.1.fa xstreme_example_output_files/background
Finished invoke:
  name: bg  status: 0  time: 0.015989
Invoking:
  streme --verbosity 1 --oc xstreme_example_output_files/streme_out -dna --minw 6 --maxw 15 --order 2 --bfile xstreme_example_output_files/background --seed 0 --align center --evalue --thresh 0.05 --p nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: streme  status: 0  time: 49.395275
Invoking:
  meme -oc xstreme_example_output_files/meme_out -mod zoops -minw 6 -maxw 15 -bfile xstreme_example_output_files/background -markov_order 2 -seed 0 -dna -revcomp -evt 0.05 -p 4 -nostatus nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: meme  status: 0  time: 1472.665249
Invoking:
  sea --verbosity 1 --oc xstreme_example_output_files/sea_disc_out --qvalue --thresh 1 --order 2 --bfile xstreme_example_output_files/background --seed 0 --align center --motif-pseudo 0.01 --noseqs --m xstreme_example_output_files/meme_out/meme.xml --m xstreme_example_output_files/streme_out/streme.xml --p nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: sea_disc  status: 0  time: 0.589109
Invoking:
  sea --verbosity 1 --oc xstreme_example_output_files/sea_out --thresh 0.05 --order 2 --bfile xstreme_example_output_files/background --seed 0 --align center --motif-pseudo 0.01 --m xstreme_example_output_files/meme_out/meme.xml --m xstreme_example_output_files/streme_out/streme.xml --m JASPAR2018_CORE_non-redundant.meme --p nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: sea  status: 0  time: 48.567707
Invoking:
  sea --verbosity 1 --oc xstreme_example_output_files/distr_out --pvalue --thresh 1 --hofract 0 --order 2 --bfile xstreme_example_output_files/background --seed 0 --motif-pseudo 0.01 --no-pgc --p nrmix.nseqs.100.100bp.seed.1.fa --m xstreme_example_output_files/combined.meme
Finished invoke:
  name: distr_sea  status: 0  time: 13.115946
Invoking:
  tomtom -verbosity 1 -oc xstreme_example_output_files/streme_tomtom_out -min-overlap 5 -dist ed -evalue -thresh 1 -no-ssc xstreme_example_output_files/streme_out/streme.xml JASPAR2018_CORE_non-redundant.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 5.120484
Invoking:
  tomtom -verbosity 1 -oc xstreme_example_output_files/meme_tomtom_out -min-overlap 5 -dist ed -evalue -thresh 1 -no-ssc xstreme_example_output_files/meme_out/meme.xml JASPAR2018_CORE_non-redundant.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 8.345274
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 xstreme_example_output_files/combined.meme xstreme_example_output_files/combined.meme 1> xstreme_example_output_files/motif_alignment.txt
Finished invoke:
  name: align_tomtom  status: 0  time: 20.274621
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_1 --bgfile xstreme_example_output_files/background --motif 2-GCTGAGTCATN xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.152339
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_2 --bgfile xstreme_example_output_files/background --motif CCASYAGRKGGCRSY xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.149639
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_3 --bgfile xstreme_example_output_files/background --motif 5-AGATAAGG xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.149107
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_4 --bgfile xstreme_example_output_files/background --motif SCCCCGCCCCC xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.154959
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_5 --bgfile xstreme_example_output_files/background --motif 3-GCGCATGCGCAC xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.149786
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_6 --bgfile xstreme_example_output_files/background --motif 4-CACTTCCTGKT xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.1519
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_7 --bgfile xstreme_example_output_files/background --motif GACTACAWYTCCCAG xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.15104
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_8 --bgfile xstreme_example_output_files/background --motif TTTTYTTTTYTTTYW xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.154845
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_9 --bgfile xstreme_example_output_files/background --motif 8-GGTCACGTGABBS xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.146378
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_10 --bgfile xstreme_example_output_files/background --motif 7-CAAGATGGC xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.148868
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_11 --bgfile xstreme_example_output_files/background --motif TGCACTCCAGCCTGG xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.151323
Invoking:
  fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_12 --bgfile xstreme_example_output_files/background --motif RGCTCACTGCAGCCT xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.148583
Writing output
Invoking:
  xstreme_html_to_tsv xstreme_example_output_files/xstreme.html xstreme_example_output_files/xstreme.tsv "xstreme -oc xstreme_example_output_files --meme-p 4 --p nrmix.nseqs.100.100bp.seed.1.fa --m JASPAR2018_CORE_non-redundant.meme" 5.5.5 "Thu Sep 14 08\:48\:04 2023 +1000"
Finished invoke:
  name: summary  status: 0  time: 0.172256
Done
