fimo
fimo --parse-genomic-coord --verbosity 1 --oc xstreme_example_output_files/fimo_out_8 --bgfile xstreme_example_output_files/background --motif TTTTYTTTTYTTTYW xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
xstreme_example_output_files/meme_out/meme.xml
nrmix.nseqs.100.100bp.seed.1.fa
0.0001
CATTTTTCTCTTGTT
0.0707
TAAGTTTCATTGTTA
0.0698
TTTCCTTATCTGTAA
0.0618
TGACCTTACCTGTCA
0.0638
TTTGCTTTTTTTTCC
0.00105
CTTTGTTTTCTTTCA
0.00248
CTTCCTTATCTGTGA
0.0386
TTTGTACTTGTTTCA
0.0767
TGTGTTTGGCTTTCT
0.0405
TGTTGTTGTATGTCC
0.0478
CTATCTTCCCTTTTC
0.0289
CTTTCTTCCTTTTGA
0.0126
TTTTTTTCCCTGTCA
0.00339
TATCTTTTCTTGTTC
0.0238
CTATCTTTTCTTGTT
0.0369
AGTTTTTTTTTTTCC
0.0386
TTTTTATCTATCTTT
0.0612
TTTCTTTTTGTTTCT
0.00194
TGATTTTGCATGTGT
0.0575
TTAGTTTATCTTTCT
0.00229
TGTGCTTCCGTTTCT
0.0398
TTTCTTTCTGTTTGT
0.0124
CATCTTTTTCTTTCT
0.0141
TTATCTCTCATTTGT
0.0308
CTATCTTCCTTCTCA
0.0671
TGTTTTGTTTTTTCA
0.00709
TGTGTTTTGTTTTTT
0.0109
TTTATTTTATTTTCA
0.00462
ATTTATTTTATTTTC
0.059
CTATGTTATTTTTTT
0.00565
TTTGTTTATTTCTCT
0.00977
TTATTTCTCTTCTCT
0.0414
TTTTTTTATTTTGGT
0.0115
TTTTTTCATGTGTCT
0.017
CATTTTTTCATGTGT
0.0386
TTTGCATTTCTCTCA
0.0673
TGACCATATTTTTTT
0.0718
CTTCGTTTCGTTTTC
0.0599
TGTTCTGTTCTGTTT
0.0189
TTCTGTTCTGTTTCA
0.0733
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTGA
4.27e-05
TTTTTTTTTTTTTTG
0.0386
CAATCTTTTTTTTGA
0.0165
CATGTTTCCTTGTGT
0.0707
TTTGGATACCTTTTA
0.0546
TTTGCTTATTTCTTT
0.0126
CAAAGTTTTCTGTTT
0.0642
TTTTTTGAGATGTGT
0.0682
CTTATTTCTTTTGCA
0.0707
TTTATTTATCTTTCC
0.00371
TAAGTTTATCTTTCT
0.0104
TATCTTTCTCTCTCT
0.0572
TTTTTTGTATTTTTA
0.00977
ATTTTTTGTATTTTT
0.0344
TTTGTTGTCTTGTTT
0.0167
TGTTGTCTTGTTTTC
0.056
TTATCTCTCTTGTGT
0.0274
TGTTCTTTTTTGTTT
0.00127
CTTTTTTGTTTTTGA
0.00514
TTCTTTTTTGTTTTT
0.0173
CTTGTTGTTCTTTTT
0.0181
TTATCATTTCTTTGT
0.0146
CATTTTTGTTTTTGA
0.0183
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
ATTTTTTTTTTTTTT
0.00466
TTTTTTTTTTTTGGA
0.00793
AATTTTTTTTTTTTT
0.0175
AAATTTTTTTTTTTT
0.0319
TTTTTTTTTTTTTTG
0.0386
TTTTCTTTCATGGTA
0.0423
TTTTTTTTTTTTTGG
0.0575
TTTTTTTTTTTGGAA
0.0684
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTGA
4.27e-05
CAATTTTTTTTTTTT
0.00437
ATTTTTTTTTTTTTT
0.00466
TTTCATTTGTTTTTT
0.0143
AATTTTTTTTTTTTT
0.0175
TTTTTTTTTTTTTTG
0.0386
TTCATTTGTTTTTTT
0.0459
TTTAATTGTGTTTCA
0.0305
TTAAAATTTCTTTCA
0.0561
TTAGTTCTCCTGTGA
0.0612
TTTTTTTTTTTTTCT
3.18e-06
TTTCTTTTTTTTTTT
0.000177
TTTTGTTTCTTTTTT
0.000297
TTTTTTTTTCTGTGA
0.000565
TTTGTTTCTTTTTTT
0.000579
CTTTTTTTTTTTTTC
0.000789
TTTTTTTTTTTCTGT
0.00286
TTCTTTTTTTTTTTT
0.00513
TCTTTTTTTTTTTTT
0.0459
GTTTCTTTTTTTTTT
0.059
TTTTTGTTTCTTTTT
0.0612
TTTTTTTTTCTTTTA
1.49e-05
TTTTTTTTTTTCTTT
0.000948
TGAGTTTTTTTTTTT
0.00344
TTTTTTTTCTTTTAT
0.00593
AGTTTTTTTTTTTCT
0.0188
TTTTTTTTTTCTTTT
0.0519
TTTGCTTCACTTTTA
0.0173
CATTATTCTTTTTGC
0.0581
TTTTTTTTTTTTTGA
4.27e-05
TTTTTTTTTTTTTTG
0.0386
TGTGCTTTCTTGTGC
0.0405
CTTTCTTTTCTCTGC
0.0409
TGACCTTTCTTTTCA
0.02
TTAGTTTTGTTTTGT
0.0115
TTTTGTTTTGTCTCC
0.0306
TTTGTTTTTATGTAT
0.0344
TATGTATTTATTTTT
0.0369
CGTTCTTTGTTTTTA
0.0216
TTTGTTTTTATCTGC
0.0402
CTTCTTTCGCTTTTT
0.0398
TTTGTTTTACTTTAA
0.0517
TTAGTTTCTCTTTCT
0.0035
TTTAGTTCTGTTTGT
0.0237
TTTTGTTACTTTTCA
0.00166
CTTCTTTTTCTTTTT
0.00317
CTTTTTCTTTTTGTA
0.0592
TAATTTTGTATTTTT
0.011
CATTTTTACATGTCA
0.0437
TAATATTTAATTTCA
0.0527
CTTTATTATTTTTCT
0.00411
TTTTCTGTTCTCTGT
0.0386
TTATTATTTTTCTGT
0.0477
TGTTCTCTGTTTTGT
0.048
TTCTGTTCTCTGTTT
0.0586
TTCTCTGTTTTGTTT
0.0642
ATTATTTTTCTGTTC
0.0647
AATGTTTTTATTTCA
0.0767
CTTTTTCGTTTGTGT
0.0447
CTATCTTTTCTGTCC
0.0138
TTTTTTTTTTTTTTT
1.45e-06
CTTTTTTTTTTTTTT
0.000129
TTTACTTCCATTTCT
0.0132
TTTTTAGGTTTTTTC
0.0622
TATTCTTATCTTTGT
0.00405
CTTTTTTGTTTTTGT
0.00387
TTTTTTGTTTTTGTT
0.0215
TTTTTGTTTTTGTTT
0.0767
TTATCTTAACTGTCT
0.0162
TTTTATTATCTGTCC
0.00866
TTAGTTTGTCTTTCC
0.0126
TTTTGTTATCTCTTA
0.0138
TGTTGTTTGCTTTTA
0.0161
TTATCTCTTATCTCA
0.0618
TTATCTTTGGTCTCA
0.0642
TTTTTTTGGTTGGCA
0.0768
TTTTCTTTCCTTTTA
0.000296
TTTTCTTTTTTCTTT
0.00174
TTCTTTTTTCTTTCC
0.018
TTTCTTTCCTTTTAT
0.0455
AGTTTTCTTTTTTCT
0.0709
CTTATTTATCTGTTA
0.0156
TGTCTTTTTCTGTTA
0.0102
CTTTCTCTTCTTTCC
0.02
TGTTTTTTTCTGGGC
0.074
TTAACATCTGTTTTT
0.0767
CTTTCTTATCTGTGC
0.0197
TGTGGTTTTGTTTTT
0.0155
TTTTTTGTCTTGTCA
0.00838
AAATCTTTTTTGTCT
0.0636
CTTTTTTGTCTTGTC
0.0647
TAACCTTATATTTCT
0.0307
TGTCCTCTTGTTTTT
0.055
TTTGCTCATCTGTTC
0.0444
TTTGTTTTTTTTTTC
0.000486
TGTGTTTGTTTTTTT
0.0062
TTACCTTGTGTTTGT
0.0369
TTGTTTTTTTTTTCT
0.0476
TGTGGTTGACTTTTT
0.0642
TTATCTTGTCTGTTT
0.00466
CTTTGTTCTCTCTTC
0.0655
TTTGCTCCTTTCTCT
0.0674
TAAGCTTTCTTGTCT
0.0219
TTATTTTTTATTTTT
0.000254
TATTTTTTATTTTTT
0.00315
ATTTTTTATTTTTTT
0.00977
TTTTTATTTTTTTAA
0.0334
TTTTTTATTTTTTTA
0.0572
TTAGTTTCTCTTTCC
0.00977
TTACATTGGTTTTTA
0.0647
TTACTTTCCCTCTCT
0.062
CTTTTTTTTTTTTAA
0.0138
TGCTTTTTTTTTTTT
0.0187
CTTATTTCACTTTCA
0.0447
TTCACTTTCATTTTT
0.0684
TTTTTTTTTCTTTCT
1.15e-05
TTTTTTTTTTTCTTT
0.000948
TTTTTTTCTTTCTTT
0.00399
TTTCTTTCTTTCTTT
0.0173
GTTTTTTTTTTTTCT
0.0503
TTTTTTTTTTTTCTT
0.0516
TTTTTCTTTCTTTCT
0.0636
TTTTTTTTCTTTCTT
0.0768
TGATCTTTCTTGTTC
0.0186
TTATCTTTCCTTTTC
0.00313
TATCTTTCCTTTTCA
0.0181
TGAATTTGTTTTTTA
0.0194
TTTCTTCCTATGTTA
0.0527
TTATCTTGGGTTTGA
0.0509
CTTTGTTGTTTTTCT
0.0055
TTAAGTCCTCTTTCT
0.055
TGACCTTTCGTTTCT
0.0423
TTAGTTTCATTTTCA
0.0187
TGAGCTTCTGTTTTC
0.0612
TTTTCTTTATTTTCC
0.00315
TTTAGTTTCATTTTT
0.00816
TTTATTGGTTTTTCT
0.0175
TTTTATTGGTTTTTC
0.0246
TTTTTATTGGTTTTT
0.03
CATTTTTGCCTTTCC
0.0423
TTTCATTTAGTTTCA
0.0447
TGTACTTTCATTTTC
0.0343
CGTTTTTGGCTTTGT
0.0647
TTAGTTTCTCTTTCC
0.00977
TTTTTTTAGCTTGCA
0.0434
TGTGCTTAGCTGTTT
0.0507
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTGA
4.27e-05
CTTTTTTTTTTTTTT
0.000129
TATGCTTTTTTTTTT
0.00193
TGCTTTTTTTTTTTT
0.0187
TTTTTTTTTTTTTTG
0.0386
CTTGTATGCTTTTTT
0.0682
TGTTGTGGCTTTTCT
0.0581
TGTTTTCATTTCTCT
0.0555
TGTATTTCTCTGTGT
0.0308
CTTTGTGCTTTGTCA
0.0555
CTTTTTTGTATGTCA
0.0151
CTTCTTGCTTTTTCA
0.0476
TTTTTATAATTTTGC
0.0548
CTTTTTCAGTTGTCT
0.0601
TTTCTTTATCTGTAT
0.0447
TTTTCTTATTTTTAT
0.00779
CATTTTCTTATTTTT
0.0334
TTAACTTCCATGTCA
0.0469
TTTTGTTTTGTTTTT
0.000722
CATTTTGTTTTGTTT
0.0318
TTTTTTCATTTTGTT
0.0344
TTTGCTGAGTTGTCT
0.0647
TATAATTGTTTTTGC
0.0658
CAAATTTTTATTTTA
0.0398
TTTTTTCTTTTGTGA
0.00629
CATACTTTTTTCTTT
0.0618
TGTTTTCATTTTTTC
0.0188
TTTTCTTCCTTGTCA
0.00344
TATTTTTACCTTTCA
0.00427
TTAGCAGTTTTTTCT
0.0647
TTTTGTTTTTTTTCA
0.000113
TTTTTTTTTTTTTTT
1.45e-06
CTTTTTTTTTTTTTT
0.000129
TTTCCTTTTTTTTTT
0.000355
TTCCTTTTTTTTTTT
0.0195
CTTCCTTTTTTTTTA
0.00426
TGAACTTTTTTTTTA
0.0093
TGACTTCCTTTTTTT
0.0593
TTCTTTTGTGTTTTC
0.07
TTAATTTACTTTTTA
0.0062
TTTTGTTCTTTGTCA
0.00278
TTACCTTGCTTTTGT
0.0253
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTA
4.47e-06
CTAGTTTTTTTTTTT
0.00333
AGTTTTTTTTTTTTT
0.0181
GTTTTTTTTTTTTTT
0.0478
TTTGCTGATCTGTTA
0.0312
TTATGTTCCCTTTGT
0.0137
TGTTGTGTTGTTTCT
0.0369
TGAGGTTTTTTTTTT
0.00977
TTAATTTTTGTGTGT
0.0173
TTTTTTTTTTTTCCA
0.0612
TATGTTTAGCTTTTT
0.0228
TTTGCTTCCTTTTAC
0.0718
TTTCTATTCTTGTCT
0.0308
TAAATTTAACTTTTT
0.046
TTTTCATATGTTTTA
0.0186
TTTATTTCCCTCTCC
0.0635
ATATGTTTTATTTCC
0.0733
TGAGTATTTTTGTCT
0.0561
TTTTTTTTCCTTTGA
0.000565
TTATTTTTTGTTTTT
0.000491
TTTTATTTTTTGTTT
0.000579
TATTTTTTGTTTTTT
0.00315
TTTTGTTTTTTTGCT
0.00856
ATTTTTTGTTTTTTT
0.017
TGTTATTTCCTGTGT
0.0247
TTATTTCCTGTGTTA
0.0423
TTTCCTTTGTTGTTT
0.012
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTGA
4.27e-05
CTTTTTTTTTTTTTT
0.000129
CTCTTTTTTTTTTTT
0.0183
CTCTCTTTTTTTTTT
0.0243
TTTTTTTTTTTTTTG
0.0386
TTCTCTCTTTTTTTT
0.0405
TCTTTTTTTTTTTTT
0.0459
TTTTTTTTTTTGGCA
0.00933
TTTTCTGTGATGTCA
0.048
TTTTATCTTCTTTGA
0.0153
TATCCTTTCTTGTCC
0.0343
CTTTTTGTCGTTTTC
0.0516
TTTACATATATTTTT
0.0344
CTTCTTTCACTGTTT
0.0609
TGTGCTTTTTTTGTT
0.0385
TTATGTTTTCTGTTC
0.00578
TTTTCTTGTTTGTCA
0.00178
TTTTGTTCCATTTTC
0.0138
TTTGTTCCATTTTCA
0.0475
TAAAGTTCTATTTTT
0.048
CATCATTGTCTTTTT
0.0732
CTTTGTTTAGTGTTC
0.07
TTTTCTGACCTTTCT
0.0113
TTTGTTTTCATGTCT
0.00537
CTCTCTTATCTTTCA
0.0572
TAATCTTGCTTGTTC
0.0454
TTTTTTTTCTTTTGA
0.000297
TTATCAGTTTTTTTT
0.0344
TTTTTTTTTCTTTTG
0.0463
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTGA
4.27e-05
CTTTTTTTTTTTTTT
0.000129
TTTCCTTTTTTTTTT
0.000355
TTCCTTTTTTTTTTT
0.0195
TTTTTTTTTTTTTTG
0.0386
TTTTTTTTTTTTGAT
0.0398
TTAATTTTTTTGTCT
0.00248
TTTCTTTTAATTTTT
0.00977
TTTTAATTTTTTTGT
0.0133
TTCTTTTAATTTTTT
0.041
TGTGGTTATTTCTTT
0.052
TTTAATTTTTTTGTC
0.0572
TTTCCTCATCTGTTC
0.055
CTTTATTATCTCTTA
0.0471
CTATTTGCTCTGTGT
0.071
CTTTTTGACCTTTCC
0.046
CTATTTGACCTTTGA
0.0674
CTTTTTTTTTTTTTA
0.000222
TTTTTTTAACTTTTA
0.00271
TTTTTTTTTTTTTAA
0.00335
TTAACTTTTATTTTA
0.00532
TCTTTTTTTTTTTTT
0.0459
AGTCTTTTTTTTTTT
0.0503
TGTTCTTCCTTGTGC
0.0389
TAATCTGTTCTTTCA
0.0237
CTTTATGCCTTTTCA
0.0664
TTCTTTTTCCTTTCT
0.0167
TTTTATTATATTTCA
0.00335
TTATTTTTAGTTGCA
0.0749
TGTTTTTGTCTTTTC
0.00758
ATATTTTATATTTTC
0.0609
TTTGATTACATTTCC
0.0344
TTTTAATAATTTTTT
0.0461
ATTTCTTTCTTTTTA
0.018
TATATTTCTTTCTTT
0.0422
TTTCTTTCTTTTTAC
0.048
TTTAAATATATTTCT
0.0618
TTAAGTTCTGTGTTT
0.0423
TGAGCTTATTTTTGT
0.0183
TTTTTTTTCTTGTTA
0.000353
CTTTTTTTTCTTGTT
0.0156
ATAACTTTTTTTTCT
0.0421
TTATAACTTTTTTTT
0.0574
TATGTTCTTCTGTCA
0.0393
CTCCTTTTTTTTTCA
0.0609
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTGA
4.27e-05
TGAATTTTTTTTTTT
0.00466
ATTTTTTTTTTTTTT
0.00466
AATTTTTTTTTTTTT
0.0175
TTTGAATTTTTTTTT
0.0178
TTTTTTTTTTTTTTG
0.0386
TTTTTTTTTTTTGAT
0.0398
TTTTGATGCTTGTTT
0.0467
CTTGTTTTCTTGTAA
0.0767
CAAGGTTTTGTTTTA
0.0684
TTATTTGGGTTTTGT
0.0594
TATTGTTCCTTGTCA
0.0219
TTTCCTCTGTTTTCC
0.0592
CATTTTTCTATCTCT
0.071
TTTCCTTTTATGGCA
0.0642
CATCATTTCCTTTTA
0.0642
TGTTTTTTTTTTTCC
0.000969
AGTGTTTTTTTTTTT
0.0405
TGTTTTCATTTTTCT
0.00977
CATGTTTTCATTTTT
0.0289
TTTTCATTTTTCTCC
0.0447
CTTTTTTGGGTTTCC
0.0592
CTTCCTCTTTTTTTT
0.0232
TTTGTTTTCATTGCC
0.0618
TTTCCTTCCCTTTTA
0.00977
TGTTTTCCGCTTTTA
0.0642
TATGCTTATCTGTCT
0.0146
TTATCTGTCTTGTGA
0.0352
CTTGTTTCTTTCTTC
0.0603
TAAACTCTTGTTTCT
0.0767
TTTGGTTTCCTGTGA
0.0178
TTTTGTTGGTTGTTT
0.0171
CTTGCTTTGTTTTGT
0.0245
TTTGTTTTGTTGGTT
0.0593
TGTATTTTACTTTTT
0.0179
CTTTCTTATCTTTAA
0.0386
TTTCTTTCCCTTTCT
0.0055
TTTTCTCCTATCTCA
0.07
TTTTATTTTCTTTCC
0.00152
TTTTCTTTCCTGGTA
0.0296
CATGCTTTTATTTTC
0.0398
CTTTGTTCTCTCTTC
0.0655
CGTTCTTCGCTTTTC
0.0749
TGAGTTTTCCTTTGT
0.0197
TGAGCTTCCATTTTC
0.0767
CTTCCTTACATTTCT
0.0313
TTTTCTTCTCTTTGT
0.000999
TGTCTTTTCTTCTCT
0.0425
CTTTGTCTTGTGTCT
0.0527
CTTTCTTGCGTTTCC
0.0405
CTTTCTCATCTGTGA
0.0527
TTTTCTCTTCTTTGC
0.0115
TTTATTCAATTGTTA
0.0647
TATTCTTTGATTTCT
0.0133
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
TTTTTTTTTTTTTTT
1.45e-06
CTTTTTTTTTTTTTT
0.000129
CGCTTTTTTTTTTTT
0.0485
CTTGGTTTGCTGTCA
0.0581
CTATCTTTTGTCTTC
0.0684
TTTTGTTCTTTGTCA
0.00278
TGTTTTGTTCTTTGT
0.0141
TTTATTCTGATTTTT
0.0436
TGTGCTTTTTTCTCT
0.0243
yes