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For the simple algorithm: fg_match
For the other algorithms: fg_match / fg_size

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For the simple algorithm: bg_match
For the other algorithms: bg_match / bg_size

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# MoMo

## Modification Motifs

For further information on how to interpret these results please access http://meme-suite.org/doc/momo-output-format.html.
To get a copy of the MEME software please access http://meme-suite.org.

If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of statistically significant post-translational modification motifs", Bioinformatics, 2018. [full text]

Discovered Motifs | Inputs & Settings | Program information | Results in TSV Format
| Results in MEME Format

## Discovered Motifs

Motif Logo | Mod | Motif | Regular Expression | Score | FG | BG | Fold Enrichment | Unadjusted p-value | Tests | Adjusted p-value | Motif Occurrences | MoDL Log
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---

## Inputs & Settings

#### Other Settings

filter foreground peptides? |
remove peptides if they contain 'X'? |
eliminate duplicate peptides? |
generate single motif per mass? |
random number seed |

##### MoMo version

(Release date: )

##### Command line summary